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Conserved domains on  [gi|1496288059|ref|XP_026734191|]
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UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1 [Trichoplusia ni]

Protein Classification

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase( domain architecture ID 13540367)

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, also called O-linked N-acetylglucosamine transferase (OGT), is a glycosyltransferase family 41 protein containing tetratricopeptide (TPR) repeats that catalyzes the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 504-1038 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


:

Pssm-ID: 404688  Cd Length: 543  Bit Score: 1146.37  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  504 VCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLCLEKVQVLHKLPFNFPRELQ---GR 580
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSlsgGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  581 LRIGYVSSDFGNHPTSHLMQSVPGLHDRTKVEIFCYALSPDDGTTFRSKIAREAEHFTDLSQMQCNGKAADKIYADGIHI 660
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  661 LVNMNGYTKGARNEIFALRPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFVGDHKQMFPHL 740
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  741 QERLILSDKvkshNNLGSVADNVAVINATDLSPLVENTDIKE-IKEIVRAA--------RPVEISLKVAELPTTTPIETM 811
Cdd:pfam13844  241 KERAIVTDK----SDGTKVRDNVAVVNATDLKPLLEKTEVKDkVKEVVVVEttgnsrdsSKVEVVLPVIELPTTEPIESM 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  812 IASGQVQTSVNGVILQNGLATTQTNNKAATGEEVPQSIVITTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVP 891
Cdd:pfam13844  317 IQSGQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVP 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  892 NSVLWLLRFPAVGEPNLQATAQQLGLPPGRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGE 971
Cdd:pfam13844  397 NSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGE 476

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  972 TLASRVAASQLNTLGCPELIARTRQEYQDIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGL 1038
Cdd:pfam13844  477 TLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 238-485 9.00e-47

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 169.14  E-value: 9.00e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 317
Cdd:COG2956     27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  318 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 397
Cdd:COG2956    107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAE 186

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  398 VLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAI 477
Cdd:COG2956    187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAAL 265


                   ....*...
gi 1496288059  478 QSYRTALK 485
Cdd:COG2956    266 ALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 87-349 2.87e-43

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 158.74  E-value: 2.87e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   87 LLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 166
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  167 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAV 246
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  247 ALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNfPDAYCN 326
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                          250       260
                   ....*....|....*....|...
gi 1496288059  327 LANALKEKGQVVDAEECYNTALR 349
Cdd:COG2956    251 LADLLERKEGLEAALALLERQLR 273
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 504-1038 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1146.37  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  504 VCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLCLEKVQVLHKLPFNFPRELQ---GR 580
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSlsgGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  581 LRIGYVSSDFGNHPTSHLMQSVPGLHDRTKVEIFCYALSPDDGTTFRSKIAREAEHFTDLSQMQCNGKAADKIYADGIHI 660
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  661 LVNMNGYTKGARNEIFALRPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFVGDHKQMFPHL 740
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  741 QERLILSDKvkshNNLGSVADNVAVINATDLSPLVENTDIKE-IKEIVRAA--------RPVEISLKVAELPTTTPIETM 811
Cdd:pfam13844  241 KERAIVTDK----SDGTKVRDNVAVVNATDLKPLLEKTEVKDkVKEVVVVEttgnsrdsSKVEVVLPVIELPTTEPIESM 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  812 IASGQVQTSVNGVILQNGLATTQTNNKAATGEEVPQSIVITTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVP 891
Cdd:pfam13844  317 IQSGQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVP 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  892 NSVLWLLRFPAVGEPNLQATAQQLGLPPGRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGE 971
Cdd:pfam13844  397 NSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGE 476

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  972 TLASRVAASQLNTLGCPELIARTRQEYQDIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGL 1038
Cdd:pfam13844  477 TLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 290-1049 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 570.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  290 HGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIK---- 365
Cdd:COG3914      4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAllel 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  366 -----REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVA 440
Cdd:COG3914     84 aalllQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  441 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLvsi 520
Cdd:COG3914    164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL--- 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  521 vaEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLClEKVQVLHKLPFNFPRELQGRLRIGYVSSDFGNHPTSHLMQ 600
Cdd:COG3914    241 --AALARGPSELSPFALLYLPDDDPAELLALARAWAQLV-AAAAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLE 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  601 SVPGLHDRTKVEIFCYALSPDDGTTfRSKIAREAEHFTDLSQMqCNGKAADKIYADGIHILVNMNGYTKGARNEIFALRP 680
Cdd:COG3914    318 PLLEHHDRSRFEIYAYSTGPDDDAL-TQRLRAAADHWRDIPGL-SDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRP 395

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  681 APVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFvgdhkqmfphlqerlilsdkvkshnnlgsva 760
Cdd:COG3914    396 APVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL------------------------------- 444

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  761 dnvavinatdlsplventdikeikeivrAARPVEISLKVAELPtttpietmiasgqvqtsvngvilqnglattqtnnkaa 840
Cdd:COG3914    445 ----------------------------CYQPNDRAPEVAPLP------------------------------------- 459

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  841 tgeevpqsivitTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVPNSVLWLLRFP-AVGEPNLQATAQQLGLPP 919
Cdd:COG3914    460 ------------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARERLRAAAAARGVDP 527

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  920 GRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGETLASRVAASQLNTLGCPELIARTRQEYQ 999
Cdd:COG3914    528 DRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSEEEYV 607

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|
gi 1496288059 1000 DIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGLEMLYNKMWQRY 1049
Cdd:COG3914    608 ALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 238-485 9.00e-47

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 169.14  E-value: 9.00e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 317
Cdd:COG2956     27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  318 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 397
Cdd:COG2956    107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAE 186

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  398 VLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAI 477
Cdd:COG2956    187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAAL 265


                   ....*...
gi 1496288059  478 QSYRTALK 485
Cdd:COG2956    266 ALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 87-349 2.87e-43

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 158.74  E-value: 2.87e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   87 LLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 166
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  167 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAV 246
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  247 ALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNfPDAYCN 326
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                          250       260
                   ....*....|....*....|...
gi 1496288059  327 LANALKEKGQVVDAEECYNTALR 349
Cdd:COG2956    251 LADLLERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 34-562 1.39e-39

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 159.09  E-value: 1.39e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   34 ANAVILKMSDIQQISSVGLLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQN 113
Cdd:TIGR02917  212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA 291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  114 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 193
Cdd:TIGR02917  292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGE 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  194 LLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAV 273
Cdd:TIGR02917  372 AYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  274 AAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPS 353
Cdd:TIGR02917  452 AAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  354 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTL 433
Cdd:TIGR02917  532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  434 KEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAhclQIVCDWTDYEAr 513
Cdd:TIGR02917  612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA---QLLLAAKRTES- 687

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*....
gi 1496288059  514 MKKLVSIVAEQldKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLCLEK 562
Cdd:TIGR02917  688 AKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 89-478 6.44e-32

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 134.83  E-value: 6.44e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   89 LSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 168
Cdd:TIGR02917  505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  169 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVAL 248
Cdd:TIGR02917  585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  249 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNfPDAYCNLA 328
Cdd:TIGR02917  665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLH 743

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  329 NALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQgKLTEA 408
Cdd:TIGR02917  744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRA 822

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  409 LMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQ 478
Cdd:TIGR02917  823 LEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 52-408 7.79e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 121.34  E-value: 7.79e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   52 LLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 131
Cdd:TIGR02917  536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  132 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKA 211
Cdd:TIGR02917  616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  212 IETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAyINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHG 291
Cdd:TIGR02917  696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  292 NLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVdAEECYNTALRLCPSHADSLNNLANIKREQGYI 371
Cdd:TIGR02917  775 ALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEA 853

                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 1496288059  372 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEA 408
Cdd:TIGR02917  854 DRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 242-540 1.07e-14

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 77.55  E-value: 1.07e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  242 FEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFP 321
Cdd:NF033758    75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPDDA 154

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  322 DAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 401
Cdd:NF033758   155 SSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTALKVMMRSYLDRKQLAMAKLVALRAVKIDQNDPELHHTVGLILLQ 234

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  402 QGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYR 481
Cdd:NF033758   235 EGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLRRILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYD 314

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288059  482 TALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKlvSIVAEQLDKNRLPSVHPHHSML 540
Cdd:NF033758   315 EAEKLDPELAAIYLNRAIILHRVKDAPERAVELYK--KYIAMAGGEVALNAEAPVFGLL 371
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 297-513 2.98e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 65.73  E-value: 2.98e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  297 YYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH-ADSLNNLANIkrEQGyiEEAT 375
Cdd:cd24142     10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  376 RLYLKALEVfpefaaahsnLASVLQQQGKLTEALMHYKEAIRIQPtfADAYSNMGntlkE--MQD---VAGA----LQCY 446
Cdd:cd24142     86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELKRKL--SSALCALA----EiyMTDlcdEPDAeqrcEELI 149

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288059  447 TRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYEAR 513
Cdd:cd24142    150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 321-420 3.95e-11

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 64.49  E-value: 3.95e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  321 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 400
Cdd:NF033920   156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                           90       100
                   ....*....|....*....|
gi 1496288059  401 QQGKLTEALMHYKEAIRIQP 420
Cdd:NF033920   236 AQGCTAQARAAAECALALAP 255
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 109-490 5.56e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 63.95  E-value: 5.56e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  109 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-----------Y---INLAAALVAAGDMEQAVQAY 174
Cdd:PRK11447   295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkwesllkvnrYwllIQQGDAALKANNLAQAERLY 374

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  175 VTALQYNP-DLYCVRSdLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEiwlaihhfEKAvaldpnfl 253
Cdd:PRK11447   375 QQARQVDNtDSYAVLG-LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP--------EKA-------- 437

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  254 DAYINlgnvlKEARIFDRAVAAYLRALNLSPNNAvvhgnLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKE 333
Cdd:PRK11447   438 LAFIA-----SLSASQRRSIDDIERSLQNDRLAQ-----QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  334 KGQvvdaeecyntalrlcPSHADSL-NNLANIKR---EQGYieeATRLYLKALEVfPEFAAAHSN--------------- 394
Cdd:PRK11447   508 AGQ---------------RSQADALmRRLAQQKPndpEQVY---AYGLYLSGSDR-DRAALAHLNtlpraqwnsniqela 568

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  395 ----------LASVLQQQGKLTEA--LMHYKEA-IRIQPTFADAYSNMGntlkemqDVAGALQCYTRAIQINPAFADAHS 461
Cdd:PRK11447   569 qrlqsdqvleTANRLRDSGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARL 641

                          410       420
                   ....*....|....*....|....*....
gi 1496288059  462 NLASIHKDSGNIPEAiqsyRTALKLKPDF 490
Cdd:PRK11447   642 GLIEVDIAQGDLAAA----RAQLAKLPAT 666
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 109-182 2.50e-09

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 59.10  E-value: 2.50e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  109 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 182
Cdd:NF033920   182 ATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
TPR_11 pfam13414
TPR repeat;
296-335 9.25e-09

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 52.09  E-value: 9.25e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1496288059  296 VYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKG 335
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
124-165 1.44e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 48.62  E-value: 1.44e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1496288059  124 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 165
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 131-264 1.89e-07

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 51.98  E-value: 1.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  131 GQLQEALENYRHAVRLKPDFID-GYI--NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKAc 207
Cdd:PRK02603    49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG- 127

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  208 ylkaietRPDFAVAWsnlgcvFNAQSEIWlaihhfEKAVALDPNfldAYINLGNVLK 264
Cdd:PRK02603   128 -------DQDEAEAL------FDKAAEYW------KQAIRLAPN---NYIEAQNWLK 162
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 117-150 2.10e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 45.13  E-value: 2.10e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   117 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 150
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 294-386 3.68e-06

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 49.47  E-value: 3.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  294 ACVYYEQ-GLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIE 372
Cdd:NF033920   162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                           90
                   ....*....|....
gi 1496288059  373 EATRLYLKALEVFP 386
Cdd:NF033920   242 QARAAAECALALAP 255
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 321-354 3.51e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.66  E-value: 3.51e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   321 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 354
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 105-213 8.57e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.70  E-value: 8.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  105 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-----------FIDG-----YIN------------ 156
Cdd:cd24142     22 FLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekylylgqLSGGeealqYYEkgieileeelqa 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  157 ------------------LAAALVAAG-----------DMEQAVQAYVT-ALQYNPDLYCVRSDLGNLLKALGRLDEAKA 206
Cdd:cd24142    102 lqaasaeaeeeaeelkrkLSSALCALAeiymtdlcdepDAEQRCEELITkALELDPTNPEALQTLASLRISQQRPDEAKE 181


                   ....*..
gi 1496288059  207 CYLKAIE 213
Cdd:cd24142    182 ALRRSLE 188
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 114-409 1.85e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.68  E-value: 1.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  114 PLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LKPDFIDGYI-----NLAAALVAAGDMEQAV-------QAYVT 176
Cdd:NF040586   431 RQTLRLRFHLANALRSLGRYEEARELDEDTLErqrrvLGLGEDHPHTlmtagGLGADLRALGRFREALeldeetlERHRR 510

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  177 AL-QYNPDLYCVRSDLGNLLKALGRLDEAKAcylkaIETRpdfavawsnlgcVFNAQSEIWlaihhfekaVALDPNFLDA 255
Cdd:NF040586   511 VFgEDHPRTLRAANNLAVSLRLLGDYREALE-----LDRE------------VLRRRRRVL---------GPDHPRTLLS 564

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  256 YINLGNVLKEARIFDRAVA------AYLRALNLSPNNAVVHG---NLACVYYEQGLID----LAVDTYRRAIELQ-PNFP 321
Cdd:NF040586   565 ANNLARDLRELGRYAEALDlleealERYREVLGGPDHPDTLRaakSLAVALRRAGRLEealeLAEDTYERYRRRFgPDHP 644

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  322 D---AYCNLANALKEKGQVVDA----EECYNT-ALRLCPSHADSL---NNLANIKREQGYIEEATRLYLKALEVF----- 385
Cdd:NF040586   645 DtlaAALSLANDLRALGDADEArelaREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAALEGLrerlg 724

                          330       340
                   ....*....|....*....|....*..
gi 1496288059  386 ---PEFAAAHSNLASVLQQQGKLTEAL 409
Cdd:NF040586   725 pdhPYTLAAAVNLANDLAALGDLDAAL 751
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 250-318 2.77e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 43.69  E-value: 2.77e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288059  250 PNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQP 318
Cdd:NF033920   187 PDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 265-536 1.18e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.98  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  265 EARIFDRAVAAYLRALnLSPNNA---VVHGNLACVY-----YEQGLiDLAVDTYRRAIELQ-PNFPD---AYCNLANALK 332
Cdd:NF040586   496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLgPDHPRtllSANNLARDLR 573

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  333 EKGQVVDA----EECYNTALRLC--PSHADSLN---NLANIKREQGYIEEA----TRLYLKALEVF----PEFAAAHSNL 395
Cdd:NF040586   574 ELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEAlelaEDTYERYRRRFgpdhPDTLAAALSL 653

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  396 ASVLQQQGKLTEALMHYKEAIRIQP---------TFAdAYSNMGNTLKEMQDVAGALQCYTRAI-QINPAFADAH----- 460
Cdd:NF040586   654 ANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpytla 732

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  461 --SNLASIHKDSGNIPEAIQS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYEARMKKLVSIVAEQLD 526
Cdd:NF040586   733 aaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLARLR 808

                          330
                   ....*....|
gi 1496288059  527 KnRLPSVHPH 536
Cdd:NF040586   809 R-VLGPDHPD 817
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 504-1038 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1146.37  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  504 VCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLCLEKVQVLHKLPFNFPRELQ---GR 580
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSlsgGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  581 LRIGYVSSDFGNHPTSHLMQSVPGLHDRTKVEIFCYALSPDDGTTFRSKIAREAEHFTDLSQMQCNGKAADKIYADGIHI 660
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  661 LVNMNGYTKGARNEIFALRPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFVGDHKQMFPHL 740
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  741 QERLILSDKvkshNNLGSVADNVAVINATDLSPLVENTDIKE-IKEIVRAA--------RPVEISLKVAELPTTTPIETM 811
Cdd:pfam13844  241 KERAIVTDK----SDGTKVRDNVAVVNATDLKPLLEKTEVKDkVKEVVVVEttgnsrdsSKVEVVLPVIELPTTEPIESM 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  812 IASGQVQTSVNGVILQNGLATTQTNNKAATGEEVPQSIVITTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVP 891
Cdd:pfam13844  317 IQSGQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVP 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  892 NSVLWLLRFPAVGEPNLQATAQQLGLPPGRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGE 971
Cdd:pfam13844  397 NSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGE 476

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  972 TLASRVAASQLNTLGCPELIARTRQEYQDIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGL 1038
Cdd:pfam13844  477 TLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 290-1049 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 570.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  290 HGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIK---- 365
Cdd:COG3914      4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAllel 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  366 -----REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVA 440
Cdd:COG3914     84 aalllQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  441 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLvsi 520
Cdd:COG3914    164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL--- 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  521 vaEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLClEKVQVLHKLPFNFPRELQGRLRIGYVSSDFGNHPTSHLMQ 600
Cdd:COG3914    241 --AALARGPSELSPFALLYLPDDDPAELLALARAWAQLV-AAAAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLE 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  601 SVPGLHDRTKVEIFCYALSPDDGTTfRSKIAREAEHFTDLSQMqCNGKAADKIYADGIHILVNMNGYTKGARNEIFALRP 680
Cdd:COG3914    318 PLLEHHDRSRFEIYAYSTGPDDDAL-TQRLRAAADHWRDIPGL-SDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRP 395

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  681 APVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFvgdhkqmfphlqerlilsdkvkshnnlgsva 760
Cdd:COG3914    396 APVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL------------------------------- 444

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  761 dnvavinatdlsplventdikeikeivrAARPVEISLKVAELPtttpietmiasgqvqtsvngvilqnglattqtnnkaa 840
Cdd:COG3914    445 ----------------------------CYQPNDRAPEVAPLP------------------------------------- 459

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  841 tgeevpqsivitTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVPNSVLWLLRFP-AVGEPNLQATAQQLGLPP 919
Cdd:COG3914    460 ------------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARERLRAAAAARGVDP 527

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  920 GRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGETLASRVAASQLNTLGCPELIARTRQEYQ 999
Cdd:COG3914    528 DRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSEEEYV 607

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|
gi 1496288059 1000 DIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGLEMLYNKMWQRY 1049
Cdd:COG3914    608 ALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 238-485 9.00e-47

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 169.14  E-value: 9.00e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 317
Cdd:COG2956     27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  318 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 397
Cdd:COG2956    107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAE 186

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  398 VLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAI 477
Cdd:COG2956    187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAAL 265


                   ....*...
gi 1496288059  478 QSYRTALK 485
Cdd:COG2956    266 ALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 191-453 4.01e-44

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 161.44  E-value: 4.01e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  191 LGNLLKAL-----GRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKE 265
Cdd:COG2956      9 LGWYFKGLnyllnGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  266 ARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYN 345
Cdd:COG2956     89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  346 TALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTfADA 425
Cdd:COG2956    169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDL 247

                          250       260
                   ....*....|....*....|....*...
gi 1496288059  426 YSNMGNTLKEMQDVAGALQCYTRAIQIN 453
Cdd:COG2956    248 LLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 269-502 4.12e-44

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 161.44  E-value: 4.12e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  269 FDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTAL 348
Cdd:COG2956     24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  349 RLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSN 428
Cdd:COG2956    104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL 183

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  429 MGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDfPDAYCNLAHCLQ 502
Cdd:COG2956    184 LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLE 256
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 87-349 2.87e-43

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 158.74  E-value: 2.87e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   87 LLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 166
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  167 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAV 246
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  247 ALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNfPDAYCN 326
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                          250       260
                   ....*....|....*....|...
gi 1496288059  327 LANALKEKGQVVDAEECYNTALR 349
Cdd:COG2956    251 LADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 123-383 7.29e-43

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 157.58  E-value: 7.29e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  123 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 202
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  203 EAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNL 282
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  283 SPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPShADSLNNLA 362
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALA 252

                          250       260
                   ....*....|....*....|.
gi 1496288059  363 NIKREQGYIEEATRLYLKALE 383
Cdd:COG2956    253 DLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
314-530 9.08e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 156.32  E-value: 9.08e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  314 IELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 393
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  394 NLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 473
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  474 PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 530
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
246-426 1.96e-42

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 155.55  E-value: 1.96e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  246 VALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYC 325
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  326 NLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 405
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180
                   ....*....|....*....|.
gi 1496288059  406 TEALMHYKEAIRIQPTFADAY 426
Cdd:COG0457    161 EEALELLEKLEAAALAALLAA 181
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
178-419 7.13e-42

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 154.01  E-value: 7.13e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  178 LQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYI 257
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  258 NLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQV 337
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  338 VDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIR 417
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                   ..
gi 1496288059  418 IQ 419
Cdd:COG0457    241 YQ 242
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
280-460 1.16e-41

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 153.24  E-value: 1.16e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  280 LNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLN 359
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  360 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDV 439
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180
                   ....*....|....*....|.
gi 1496288059  440 AGALQCYTRAIQINPAFADAH 460
Cdd:COG0457    161 EEALELLEKLEAAALAALLAA 181
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
212-426 1.18e-41

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 153.24  E-value: 1.18e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  212 IETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHG 291
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  292 NLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYI 371
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  372 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAY 426
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
110-342 1.30e-39

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 147.46  E-value: 1.30e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  110 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRS 189
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  190 DLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIF 269
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  270 DRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEE 342
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 34-562 1.39e-39

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 159.09  E-value: 1.39e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   34 ANAVILKMSDIQQISSVGLLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQN 113
Cdd:TIGR02917  212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA 291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  114 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 193
Cdd:TIGR02917  292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGE 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  194 LLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAV 273
Cdd:TIGR02917  372 AYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  274 AAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPS 353
Cdd:TIGR02917  452 AAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  354 HADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTL 433
Cdd:TIGR02917  532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  434 KEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAhclQIVCDWTDYEAr 513
Cdd:TIGR02917  612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA---QLLLAAKRTES- 687

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*....
gi 1496288059  514 MKKLVSIVAEQldKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLCLEK 562
Cdd:TIGR02917  688 AKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 297-530 7.43e-38

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 143.33  E-value: 7.43e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  297 YYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATR 376
Cdd:COG2956     18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  377 LYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAF 456
Cdd:COG2956     98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  457 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 530
Cdd:COG2956    178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
85-317 2.50e-34

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 132.05  E-value: 2.50e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   85 VLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 164
Cdd:COG0457     10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  165 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEK 244
Cdd:COG0457     90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  245 AVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 317
Cdd:COG0457    170 LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 49-317 2.73e-32

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 127.15  E-value: 2.73e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   49 SVGLLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 128
Cdd:COG2956      8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  129 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACY 208
Cdd:COG2956     88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  209 LKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAV 288
Cdd:COG2956    168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                          250       260
                   ....*....|....*....|....*....
gi 1496288059  289 VHgNLACVYYEQGLIDLAVDTYRRAIELQ 317
Cdd:COG2956    248 LL-ALADLLERKEGLEAALALLERQLRRH 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 89-478 6.44e-32

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 134.83  E-value: 6.44e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   89 LSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 168
Cdd:TIGR02917  505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  169 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVAL 248
Cdd:TIGR02917  585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  249 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNfPDAYCNLA 328
Cdd:TIGR02917  665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLH 743

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  329 NALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQgKLTEA 408
Cdd:TIGR02917  744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRA 822

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  409 LMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQ 478
Cdd:TIGR02917  823 LEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 52-287 1.33e-31

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 132.42  E-value: 1.33e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   52 LLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 131
Cdd:COG3914     47 LLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  132 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKA 211
Cdd:COG3914    127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  212 IETRPDFAVAWSNL------GCVFNAQSEIWLAIHHFEKAVALDPNFLDAYIN---LGNVLKEARIFDRAVAAYLRALNL 282
Cdd:COG3914    207 LELDPDNADAHSNLlfalrqACDWEVYDRFEELLAALARGPSELSPFALLYLPdddPAELLALARAWAQLVAAAAAPELP 286


                   ....*
gi 1496288059  283 SPNNA 287
Cdd:COG3914    287 PPPNP 291
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 327-553 2.82e-29

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 118.29  E-value: 2.82e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  327 LANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLT 406
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  407 EALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKL 486
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  487 KPDFPDAYCNLAHCLQIVCDWTDYEARMKKlvsivAEQLDKNRLPsVHPHHSMLYPLTHDYRKAIAA 553
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALER-----ALEQDPDYLP-ALPRLAELYEKLGDPEEALEL 234
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 109-488 2.41e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 123.27  E-value: 2.41e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  109 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------PDFIDGYI---------------------NLAAA 160
Cdd:TIGR02917   48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGypknqvlPLLARAYLlqgkfqqvldelpgktllddeGAAEL 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  161 LVAAGD-------MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQS 233
Cdd:TIGR02917  128 LALRGLaylglgqLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  234 EIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRA---------------VAAYLRA------------------- 279
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAekhadallkkapnspLAHYLKAlvdfqkknyedaretlqda 287

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  280 LNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLN 359
Cdd:TIGR02917  288 LKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALS 367

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  360 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRI--------------------- 418
Cdd:TIGR02917  368 LLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLdpelgradlllilsylrsgqf 447

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  419 -------------QPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALK 485
Cdd:TIGR02917  448 dkalaaakklekkQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527


                   ...
gi 1496288059  486 LKP 488
Cdd:TIGR02917  528 IDP 530
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 52-408 7.79e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 121.34  E-value: 7.79e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   52 LLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 131
Cdd:TIGR02917  536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  132 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKA 211
Cdd:TIGR02917  616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  212 IETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAyINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHG 291
Cdd:TIGR02917  696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  292 NLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVdAEECYNTALRLCPSHADSLNNLANIKREQGYI 371
Cdd:TIGR02917  775 ALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEA 853

                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 1496288059  372 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEA 408
Cdd:TIGR02917  854 DRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 355-490 6.42e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 104.12  E-value: 6.42e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  355 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLK 434
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288059  435 EMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDF 490
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
60-281 1.34e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 107.01  E-value: 1.34e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   60 YQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 139
Cdd:COG0457     19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALED 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  140 YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFA 219
Cdd:COG0457     99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAAL 178

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288059  220 VAWsnlgcvfNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALN 281
Cdd:COG0457    179 LAA-------ALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 117-561 8.80e-25

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 111.71  E-value: 8.80e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  117 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 196
Cdd:TIGR02917   22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  197 ALGR----LDEAKACYLKAietRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRA 272
Cdd:TIGR02917  102 LQGKfqqvLDELPGKTLLD---DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEA 178

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  273 VAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCP 352
Cdd:TIGR02917  179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  353 SH-----------------ADSLNNLANIKR-----------------EQGYIEEATRLYLKALEVFPEFAAAHSNLASV 398
Cdd:TIGR02917  259 NSplahylkalvdfqkknyEDARETLQDALKsapeylpalllagaseyQLGNLEQAYQYLNQILKYAPNSHQARRLLASI 338

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  399 LQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQ 478
Cdd:TIGR02917  339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  479 SYRTALKLKPDFPDAYCNLA-HCLQivcdwtdyEARMKKLVSIVAEQLDKNR-LPSVHPHHSMLYPLTHDYRKAIAARHA 556
Cdd:TIGR02917  419 DLETAAQLDPELGRADLLLIlSYLR--------SGQFDKALAAAKKLEKKQPdNASLHNLLGAIYLGKGDLAKAREAFEK 490


                   ....*
gi 1496288059  557 NLCLE 561
Cdd:TIGR02917  491 ALSIE 495
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 253-388 1.06e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 100.65  E-value: 1.06e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  253 LDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALK 332
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288059  333 EKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 388
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 190-320 3.25e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 99.50  E-value: 3.25e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  190 DLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIF 269
Cdd:COG4783      9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1496288059  270 DRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF 320
Cdd:COG4783     89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 293-420 5.93e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 98.73  E-value: 5.93e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  293 LACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIE 372
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1496288059  373 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQP 420
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 40-309 1.52e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 107.86  E-value: 1.52e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   40 KMSDIQQISSVGLLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEA 119
Cdd:TIGR02917  626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG 705

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  120 YSNLGNVYKERGQLQEALENYRHAVRLKPDfIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 199
Cdd:TIGR02917  706 FELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK 784

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  200 RLDEAKACYLKAIETRPDFAVAWSNLGCVFnAQSEIWLAIHHFEKAVAL---DPNFLDAYinlGNVLKEARIFDRAVAAY 276
Cdd:TIGR02917  785 DYDKAIKHYQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLL 860

                          250       260       270
                   ....*....|....*....|....*....|...
gi 1496288059  277 LRALNLSPNNAVVHGNLACVYYEQGLIDLAVDT 309
Cdd:TIGR02917  861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 117-252 5.35e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 96.03  E-value: 5.35e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  117 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 196
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288059  197 ALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNF 252
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 238-356 1.15e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 94.69  E-value: 1.15e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 317
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1496288059  318 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHAD 356
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 322-456 1.68e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 94.49  E-value: 1.68e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  322 DAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 401
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  402 QGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAF 456
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 238-354 4.55e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 93.33  E-value: 4.55e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 317
Cdd:COG4783     23 AEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLD 102

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1496288059  318 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 354
Cdd:COG4783    103 PEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
241-451 4.95e-22

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 95.75  E-value: 4.95e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  241 HFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLsPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF 320
Cdd:COG4785     28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL 106

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  321 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAsvlq 400
Cdd:COG4785    107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY---- 182

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1496288059  401 qqgkLTEALMHYKEAI-RIQPTFADAYSNMGNTlkemqdvAGALQCYTRAIQ 451
Cdd:COG4785    183 ----LAERKLDPEKALaLLLEDWATAYLLQGDT-------EEARELFKLALA 223
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
323-497 1.17e-21

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 94.60  E-value: 1.17e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  323 AYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVF------PEFAAAHSNLA 396
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdralalPDLAQLYYERG 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  397 SVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 476
Cdd:COG4785     81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                          170       180
                   ....*....|....*....|.
gi 1496288059  477 IQSYRTALKLKPDFPDAYCNL 497
Cdd:COG4785    161 IADLEKALELDPNDPERALWL 181
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 85-218 8.24e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 89.48  E-value: 8.24e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   85 VLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 164
Cdd:COG4783      6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  165 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDF 218
Cdd:COG4783     86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 271-391 9.44e-21

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 89.29  E-value: 9.44e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  271 RAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRL 350
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1496288059  351 CPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 391
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
154-383 1.16e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 91.90  E-value: 1.16e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  154 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIE------TRPDFAVAWSNLGC 227
Cdd:COG4785      2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGV 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  228 VFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAV 307
Cdd:COG4785     82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288059  308 DTYRRAIELQPNFPDAYCNLANALKEKGqvvdaeecYNTALRLCPSHADSLNNLanikreQGYIEEATRLYLKALE 383
Cdd:COG4785    162 ADLEKALELDPNDPERALWLYLAERKLD--------PEKALALLLEDWATAYLL------QGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 389-524 1.74e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 88.71  E-value: 1.74e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  389 AAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHK 468
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288059  469 DSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 524
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 306-426 2.94e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 87.75  E-value: 2.94e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  306 AVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVF 385
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1496288059  386 PEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAY 426
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 109-219 3.50e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 87.37  E-value: 3.50e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  109 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 188
Cdd:COG4235      9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1496288059  189 SDLGNLLKALGRLDEAKACYLKAIETRPDFA 219
Cdd:COG4235     89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 117-501 2.61e-19

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 93.51  E-value: 2.61e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  117 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIdGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 196
Cdd:TIGR00990  127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  197 ALGRLDEA---------------------------KACYLKA---IETRPDFAVAWSNLGCVFNA-QSEIWLAihHFEKA 245
Cdd:TIGR00990  206 GLGKYADAlldltasciidgfrneqsaqaverllkKFAESKAkeiLETKPENLPSVTFVGNYLQSfRPKPRPA--GLEDS 283

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  246 VALDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALN---LSPNNAVVH---GNLACVY--YEQGLIDLavdtyRRAI 314
Cdd:TIGR00990  284 NELDEETGNGQLQLGLKSPESKAdesYEEAARAFEKALDlgkLGEKEAIALnlrGTFKCLKgkHLEALADL-----SKSI 358

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  315 ELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSN 394
Cdd:TIGR00990  359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  395 LASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDS---- 470
Cdd:TIGR00990  439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAlalf 518

                          410       420       430
                   ....*....|....*....|....*....|....
gi 1496288059  471 ---GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 501
Cdd:TIGR00990  519 qwkQDFIEAENLCEKALIIDPECDIAVATMAQLL 552
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 373-494 2.92e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 84.67  E-value: 2.92e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  373 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQI 452
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1496288059  453 NPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAY 494
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
112-274 6.09e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 86.89  E-value: 6.09e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  112 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL 191
Cdd:COG4785     68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  192 GNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLgcvFNAQSEIwlaihHFEKAVA-LDPNFLDAYINLGNVLKEARIFD 270
Cdd:COG4785    148 GIALYYLGRYELAIADLEKALELDPNDPERALWL---YLAERKL-----DPEKALAlLLEDWATAYLLQGDTEEARELFK 219


                   ....
gi 1496288059  271 RAVA 274
Cdd:COG4785    220 LALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 339-466 9.17e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 83.52  E-value: 9.17e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  339 DAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRI 418
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1496288059  419 QPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASI 466
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 203-324 4.90e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 81.21  E-value: 4.90e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  203 EAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNL 282
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1496288059  283 SPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAY 324
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
296-387 5.29e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 79.83  E-value: 5.29e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  296 VYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEEcYNTALRLCPSHADSLNNLANIKREQGYIEEAT 375
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 1496288059  376 RLYLKALEVFPE 387
Cdd:COG3063     80 AYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 169-287 6.75e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 80.82  E-value: 6.75e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  169 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVAL 248
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1496288059  249 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNA 287
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 245-386 9.33e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 81.55  E-value: 9.33e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  245 AVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAY 324
Cdd:COG5010     12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288059  325 CNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFP 386
Cdd:COG5010     92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 138-436 1.34e-17

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 87.73  E-value: 1.34e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  138 ENYRHAVRLKPDFIDGYINL---AAALVAAGDMEQAVQAYVTALQYN---PDLYCVRSDLGNLLKALGRLDEAKACYLKA 211
Cdd:TIGR00990  278 AGLEDSNELDEETGNGQLQLglkSPESKADESYEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKS 357

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  212 IETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHG 291
Cdd:TIGR00990  358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  292 NLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRL-------CPSHADSLNN-LAN 363
Cdd:TIGR00990  438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketkpmYMNVLPLINKaLAL 517

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  364 IKREQGYIEeATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEAL-------------------MHYKEAIRIQPTFAD 424
Cdd:TIGR00990  518 FQWKQDFIE-AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALklferaaelartegelvqaISYAEATRTQIQVQE 596

                          330
                   ....*....|..
gi 1496288059  425 AYSNMGNTLKEM 436
Cdd:TIGR00990  597 DYPVLASKLQGM 608
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 132-284 3.68e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 79.62  E-value: 3.68e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  132 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKA 211
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  212 IETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSP 284
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 372-488 8.76e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 78.85  E-value: 8.76e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  372 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQ 451
Cdd:COG5010     37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1496288059  452 INPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKP 488
Cdd:COG5010    117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 194-318 1.08e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 78.46  E-value: 1.08e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  194 LLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAV 273
Cdd:COG5010     29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1496288059  274 AAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQP 318
Cdd:COG5010    109 EYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
364-455 1.16e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 76.36  E-value: 1.16e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  364 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMhYKEAIRIQPTFADAYSNMGNTLKEMQDVAGAL 443
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 1496288059  444 QCYTRAIQINPA 455
Cdd:COG3063     80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 269-420 2.82e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 77.31  E-value: 2.82e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  269 FDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTAL 348
Cdd:COG5010      2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288059  349 RLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQP 420
Cdd:COG5010     82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
228-319 5.23e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 74.44  E-value: 5.23e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  228 VFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAaYLRALNLSPNNAVVHGNLACVYYEQGLIDLAV 307
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 1496288059  308 DTYRRAIELQPN 319
Cdd:COG3063     80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 115-216 5.87e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 76.15  E-value: 5.87e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  115 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNL 194
Cdd:COG5010     52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131

                           90       100
                   ....*....|....*....|..
gi 1496288059  195 LKALGRLDEAKACYLKAIETRP 216
Cdd:COG5010    132 LLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 194-352 6.91e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 76.15  E-value: 6.91e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  194 LLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLD-AYINLGNvlkeariFDRA 272
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDnLYNKLGD-------FEES 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  273 VAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCP 352
Cdd:COG5010     74 LALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
126-217 7.01e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 74.05  E-value: 7.01e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  126 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQaYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 205
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 1496288059  206 ACYLKAIETRPD 217
Cdd:COG3063     80 AYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 407-498 1.19e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 74.66  E-value: 1.19e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  407 EALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKL 486
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90
                   ....*....|..
gi 1496288059  487 KPDFPDAYCNLA 498
Cdd:COG4235     81 DPDNPEALYLLG 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 305-454 1.25e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 75.38  E-value: 1.25e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  305 LAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEV 384
Cdd:COG5010      4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  385 FPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINP 454
Cdd:COG5010     84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
92-213 3.30e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 76.11  E-value: 3.30e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   92 IHFQCRRLDKS-AHFSTlAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 170
Cdd:COG4785     82 AYDSLGDYDLAiADFDQ-ALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  171 VQAYVTALQYNPD-------LYCVRSDL-------------GNLLKALGRLDEAKACYLKAIE 213
Cdd:COG4785    161 IADLEKALELDPNdperalwLYLAERKLdpekalallledwATAYLLQGDTEEARELFKLALA 223
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
194-285 6.64e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 71.35  E-value: 6.64e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  194 LLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIhHFEKAVALDPNFLDAYINLGNVLKEARIFDRAV 273
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 1496288059  274 AAYLRALNLSPN 285
Cdd:COG3063     80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 98-250 8.09e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 73.07  E-value: 8.09e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   98 RLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 177
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  178 LQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDP 250
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 242-540 1.07e-14

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 77.55  E-value: 1.07e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  242 FEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFP 321
Cdd:NF033758    75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPDDA 154

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  322 DAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 401
Cdd:NF033758   155 SSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTALKVMMRSYLDRKQLAMAKLVALRAVKIDQNDPELHHTVGLILLQ 234

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  402 QGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYR 481
Cdd:NF033758   235 EGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLRRILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYD 314

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288059  482 TALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKlvSIVAEQLDKNRLPSVHPHHSML 540
Cdd:NF033758   315 EAEKLDPELAAIYLNRAIILHRVKDAPERAVELYK--KYIAMAGGEVALNAEAPVFGLL 371
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 154-323 1.16e-14

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 74.68  E-value: 1.16e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  154 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQS 233
Cdd:TIGR02521   34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  234 EIWLAIHHFEKAVAlDPNF---LDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTY 310
Cdd:TIGR02521  114 KYEQAMQQFEQAIE-DPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192

                          170
                   ....*....|...
gi 1496288059  311 RRAIELQPNFPDA 323
Cdd:TIGR02521  193 ERYQQTYNQTAES 205
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 367-499 7.88e-14

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 71.98  E-value: 7.88e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  367 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCY 446
Cdd:TIGR02521   43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  447 TRAIQIN--PAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAH 499
Cdd:TIGR02521  123 EQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
92-185 8.86e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.89  E-value: 8.86e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   92 IHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEnYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 171
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|....
gi 1496288059  172 QAYVTALQYNPDLY 185
Cdd:COG3063     80 AYLERALELDPSAL 93
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 39-182 1.12e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.60  E-value: 1.12e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   39 LKMSDIQQISSVGLLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAE 118
Cdd:COG5010     10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  119 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 182
Cdd:COG5010     90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 376-501 5.56e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 67.68  E-value: 5.56e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  376 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPA 455
Cdd:COG5010      7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1496288059  456 FADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 501
Cdd:COG5010     87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 238-378 8.46e-13

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 69.29  E-value: 8.46e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIElQ 317
Cdd:TIGR02521   50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-D 128

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  318 PNFP---DAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLY 378
Cdd:TIGR02521  129 PLYPqpaRSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
435-526 9.09e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.19  E-value: 9.09e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  435 EMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQsYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM 514
Cdd:COG3063      4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82

                           90
                   ....*....|..
gi 1496288059  515 KKLVSIVAEQLD 526
Cdd:COG3063     83 ERALELDPSALR 94
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 77-183 1.15e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.18  E-value: 1.15e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   77 RQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 156
Cdd:COG4235     11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                           90       100
                   ....*....|....*....|....*..
gi 1496288059  157 LAAALVAAGDMEQAVQAYVTALQYNPD 183
Cdd:COG4235     91 LGLAAFQQGDYAEAIAAWQKLLALLPA 117
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
160-254 1.16e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.81  E-value: 1.16e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  160 ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKAcYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAI 239
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|....*
gi 1496288059  240 HHFEKAVALDPNFLD 254
Cdd:COG3063     80 AYLERALELDPSALR 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 34-179 1.47e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 69.37  E-value: 1.47e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   34 ANAVILKMSDIQQISSVGLLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQN 113
Cdd:COG2956    129 AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288059  114 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDfIDGYINLAAALVAAGDMEQAVQAYVTALQ 179
Cdd:COG2956    209 PDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
412-501 3.75e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.86  E-value: 3.75e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  412 YKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFP 491
Cdd:COG4785     62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA 141

                           90
                   ....*....|
gi 1496288059  492 DAYCNLAHCL 501
Cdd:COG4785    142 YAYLNRGIAL 151
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 297-513 2.98e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 65.73  E-value: 2.98e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  297 YYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH-ADSLNNLANIkrEQGyiEEAT 375
Cdd:cd24142     10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  376 RLYLKALEVfpefaaahsnLASVLQQQGKLTEALMHYKEAIRIQPtfADAYSNMGntlkE--MQD---VAGA----LQCY 446
Cdd:cd24142     86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELKRKL--SSALCALA----EiyMTDlcdEPDAeqrcEELI 149

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288059  447 TRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYEAR 513
Cdd:cd24142    150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 321-420 3.95e-11

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 64.49  E-value: 3.95e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  321 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 400
Cdd:NF033920   156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                           90       100
                   ....*....|....*....|
gi 1496288059  401 QQGKLTEALMHYKEAIRIQP 420
Cdd:NF033920   236 AQGCTAQARAAAECALALAP 255
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 109-490 5.56e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 63.95  E-value: 5.56e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  109 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-----------Y---INLAAALVAAGDMEQAVQAY 174
Cdd:PRK11447   295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkwesllkvnrYwllIQQGDAALKANNLAQAERLY 374

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  175 VTALQYNP-DLYCVRSdLGNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVFNAQSEiwlaihhfEKAvaldpnfl 253
Cdd:PRK11447   375 QQARQVDNtDSYAVLG-LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP--------EKA-------- 437

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  254 DAYINlgnvlKEARIFDRAVAAYLRALNLSPNNAvvhgnLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKE 333
Cdd:PRK11447   438 LAFIA-----SLSASQRRSIDDIERSLQNDRLAQ-----QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  334 KGQvvdaeecyntalrlcPSHADSL-NNLANIKR---EQGYieeATRLYLKALEVfPEFAAAHSN--------------- 394
Cdd:PRK11447   508 AGQ---------------RSQADALmRRLAQQKPndpEQVY---AYGLYLSGSDR-DRAALAHLNtlpraqwnsniqela 568

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  395 ----------LASVLQQQGKLTEA--LMHYKEA-IRIQPTFADAYSNMGntlkemqDVAGALQCYTRAIQINPAFADAHS 461
Cdd:PRK11447   569 qrlqsdqvleTANRLRDSGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARL 641

                          410       420
                   ....*....|....*....|....*....
gi 1496288059  462 NLASIHKDSGNIPEAiqsyRTALKLKPDF 490
Cdd:PRK11447   642 GLIEVDIAQGDLAAA----RAQLAKLPAT 666
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 109-182 2.50e-09

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 59.10  E-value: 2.50e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  109 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 182
Cdd:NF033920   182 ATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
60-149 3.64e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 3.64e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   60 YQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTlAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 139
Cdd:COG3063      3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                           90
                   ....*....|
gi 1496288059  140 YRHAVRLKPD 149
Cdd:COG3063     82 LERALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 52-150 7.77e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 7.77e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   52 LLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 131
Cdd:COG4783     41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120

                           90
                   ....*....|....*....
gi 1496288059  132 QLQEALENYRHAVRLKPDF 150
Cdd:COG4783    121 RPDEAIAALEKALELDPDD 139
TPR_11 pfam13414
TPR repeat;
296-335 9.25e-09

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 52.09  E-value: 9.25e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1496288059  296 VYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKG 335
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_12 pfam13424
Tetratricopeptide repeat;
355-418 2.65e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 2.65e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288059  355 ADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQGKLTEALMHYKEAIRI 418
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 442-501 2.90e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 2.90e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  442 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 501
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL 61
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 269-355 5.15e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.30  E-value: 5.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  269 FDRAVAAYLRALNLSPNNAV---VHGNLACVYYEQGLIDLAVDTYRRAIELQPN---FPDAYCNLANALKEKGQVVDAEE 342
Cdd:COG1729      9 YDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARA 88

                           90
                   ....*....|...
gi 1496288059  343 CYNTALRLCPSHA 355
Cdd:COG1729     89 TLEELIKKYPDSE 101
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 231-385 6.46e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 55.71  E-value: 6.46e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  231 AQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVV--------HGNLACV-YYEQG 301
Cdd:cd24142     12 DQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkylylgqlSGGEEALqYYEKG 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  302 ----------LIDLAVDTYRRAIELQPNFPDAYCNLA-----------NALKEkgqvvdAEECYNTALRLCPSHADSLNN 360
Cdd:cd24142     92 ieileeelqaLQAASAEAEEEAEELKRKLSSALCALAeiymtdlcdepDAEQR------CEELITKALELDPTNPEALQT 165

                          170       180
                   ....*....|....*....|....*
gi 1496288059  361 LANIKREQGYIEEATRLYLKALEVF 385
Cdd:cd24142    166 LASLRISQQRPDEAKEALRRSLELW 190
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 297-391 1.25e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.15  E-value: 1.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  297 YYEQGLIDLAVDTYRRAIELQPN---FPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH---ADSLNNLANIKREQGY 370
Cdd:COG1729      3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82

                           90       100
                   ....*....|....*....|.
gi 1496288059  371 IEEATRLYLKALEVFPEFAAA 391
Cdd:COG1729     83 YDKARATLEELIKKYPDSEAA 103
TPR_11 pfam13414
TPR repeat;
124-165 1.44e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 48.62  E-value: 1.44e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1496288059  124 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 165
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 242-494 1.48e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.38  E-value: 1.48e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  242 FEKAVALDPNFLDAYI----NLGNVLKEARIFDRAVAAYLRALNLSPnNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 317
Cdd:TIGR00990  112 ESSVANLSEEERKKYAaklkEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  318 PNFPDAYCNLANALKEKGQVVDA-----EECYNTALR---LCPSHADSLNNLANIKREQGYIEEATRL--------YLKA 381
Cdd:TIGR00990  191 PDYSKALNRRANAYDGLGKYADAlldltASCIIDGFRneqSAQAVERLLKKFAESKAKEILETKPENLpsvtfvgnYLQS 270

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  382 LEVFPEFAA------AHSNLASVLQQQGK----------LTEALMHYKEAI---RIQPTFADAYSNMGNTLKEMQDVAGA 442
Cdd:TIGR00990  271 FRPKPRPAGledsneLDEETGNGQLQLGLkspeskadesYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEA 350

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1496288059  443 LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAY 494
Cdd:TIGR00990  351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY 402
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 50-352 1.52e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 54.53  E-value: 1.52e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   50 VGLLElAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQC----------RRLDKSAHFSTLAIKQnpLLAEA 119
Cdd:COG3071     87 VLLTR-AELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLgdweellellPALRKHKALSAEEAQA--LERRA 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  120 YSNLgnvYKERGQLQEALENYRHAV----RLKPDFIDGYinlAAALVAAGDMEQAVQAYVTALQYNPDlycvrSDLGNLL 195
Cdd:COG3071    164 YLGL---LRQAARDAEALKALWKALpraeRRDPELAAAY---ARALIALGDHDEAERLLREALKRQWD-----PRLVRLY 232

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  196 KALGRLDEAKAcyLKAIETrpdfavawsnlgcvfnaqseiWLAIHhfekavaldpnfldayinlgnvlkearifdravaa 275
Cdd:COG3071    233 GRLQGGDPAKQ--LKRAEK---------------------WLKKH----------------------------------- 254

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  276 ylralnlsPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNfPDAYCNLANALKEKGQVVDAEECYNTALRLCP 352
Cdd:COG3071    255 --------PNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
TPR_12 pfam13424
Tetratricopeptide repeat;
387-455 1.62e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 49.69  E-value: 1.62e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  387 EFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQ--------PTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPA 455
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 131-264 1.89e-07

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 51.98  E-value: 1.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  131 GQLQEALENYRHAVRLKPDFID-GYI--NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKAc 207
Cdd:PRK02603    49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG- 127

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  208 ylkaietRPDFAVAWsnlgcvFNAQSEIWlaihhfEKAVALDPNfldAYINLGNVLK 264
Cdd:PRK02603   128 -------DQDEAEAL------FDKAAEYW------KQAIRLAPN---NYIEAQNWLK 162
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 356-498 2.59e-07

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 53.79  E-value: 2.59e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  356 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPT-FADAYSNMGntlk 434
Cdd:cd24142      1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLG---- 76

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288059  435 emQDVAG--ALQCYTRAIQInpafadAHSNLASIHKDSGNIPEAIQsyrtalKLKPDFPDAYCNLA 498
Cdd:cd24142     77 --QLSGGeeALQYYEKGIEI------LEEELQALQAASAEAEEEAE------ELKRKLSSALCALA 128
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
52-206 3.86e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.32  E-value: 3.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   52 LLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 131
Cdd:COG0457     79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  132 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKA 206
Cdd:COG0457    159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 269-409 5.59e-07

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 52.70  E-value: 5.59e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  269 FDRAVAAYLRALNLSPNN-----AVVHGNLACVYYEQGLIDLAVDTYRRAIEL--QPNFPD----AYCNLANALKEKGQV 337
Cdd:pfam17874   17 AERALELAEQALALLPEDdllarGLATFVLGEAYLCLGDLDAALQAMREAEALarRADSPHvtlwALLQQGEILRAQGRL 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  338 VDAEECYNTALRLC--------PSHADSLNNLANIKREQGYIEEATRLYLKALEV---FPEFAAAHSN--LASVLQQQGK 404
Cdd:pfam17874   97 HQALETYQQALQLArdhglqhlPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqWEPDAAVDAYvlLARIALAQGE 176


                   ....*
gi 1496288059  405 LTEAL 409
Cdd:pfam17874  177 LEEAL 181
TPR_1 pfam00515
Tetratricopeptide repeat;
117-150 5.98e-07

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 46.65  E-value: 5.98e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  117 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 150
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
466-499 7.03e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 46.70  E-value: 7.03e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  466 IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAH 499
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
TPR_11 pfam13414
TPR repeat;
401-437 7.75e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 46.70  E-value: 7.75e-07
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1496288059  401 QQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQ 437
Cdd:pfam13414    6 EQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 44-415 1.16e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 52.78  E-value: 1.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059   44 IQQISSVGLLELAHREYQAGDYESAELHCMQLWRQDGTNTGVLLLLSSIhFQCRRLDK-SAHFSTLAIKQ--------NP 114
Cdd:PRK11447   380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL-YRQQSPEKaLAFIASLSASQrrsiddieRS 458

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  115 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDfiDGYIN--LAAALVAAGDMEQAVQAYVTALQYNPdlycvrsdlg 192
Cdd:PRK11447   459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVWLTyrLAQDLRQAGQRSQADALMRRLAQQKP---------- 526

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  193 nllkALGRLDEAKACYLKAIEtRPDFAVAwsNLGCVFNAQseiWLA-IHHFEKAVALDpNFLDAYINLGNVLKEArifdr 271
Cdd:PRK11447   527 ----NDPEQVYAYGLYLSGSD-RDRAALA--HLNTLPRAQ---WNSnIQELAQRLQSD-QVLETANRLRDSGKEA----- 590

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  272 AVAAYLRALNLSPNNAVVhgnLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEEcyntALRLC 351
Cdd:PRK11447   591 EAEALLRQQPPSTRIDLT---LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA----QLAKL 663

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  352 PSHA-DSLN---NLANIKREQGYIEEATRLY--LKALEVFP----EFAAAHSNLASVLQQQGKLTEALMHYKEA 415
Cdd:PRK11447   664 PATAnDSLNtqrRVALAWAALGDTAAAQRTFnrLIPQAKSQppsmESALVLRDAARFEAQTGQPQQALETYKDA 737
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 117-150 2.10e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 45.13  E-value: 2.10e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   117 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 150
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
323-387 3.29e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 3.29e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  323 AYCNLANALKEKGQVVDAEECYNTALRLC--------PSHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 387
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 330-417 3.41e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.91  E-value: 3.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  330 ALKEKGQVVDAEECYNTALRLCPSH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPE---FAAAHSNLASVLQQQG 403
Cdd:COG1729      2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                           90
                   ....*....|....
gi 1496288059  404 KLTEALMHYKEAIR 417
Cdd:COG1729     82 DYDKARATLEELIK 95
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 294-386 3.68e-06

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 49.47  E-value: 3.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  294 ACVYYEQ-GLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIE 372
Cdd:NF033920   162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                           90
                   ....*....|....
gi 1496288059  373 EATRLYLKALEVFP 386
Cdd:NF033920   242 QARAAAECALALAP 255
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 112-183 3.94e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.91  E-value: 3.94e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  112 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQAVQAYVTALQYNPD 183
Cdd:COG1729     25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPD 99
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 129-221 4.88e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.52  E-value: 4.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  129 ERGQLQEALENYRHAVRLKPD---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD-------LYcvrsDLGNLLKAL 198
Cdd:COG1729      5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkapdaLL----KLGLSYLEL 80

                           90       100
                   ....*....|....*....|...
gi 1496288059  199 GRLDEAKACYLKAIETRPDFAVA 221
Cdd:COG1729     81 GDYDKARATLEELIKKYPDSEAA 103
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 401-493 5.93e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 5.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  401 QQGKLTEALMHYKEAIRIQPT---FADAYSNMGNTLKEMQDVAGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIP 474
Cdd:COG1729      5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84

                           90
                   ....*....|....*....
gi 1496288059  475 EAIQSYRTALKLKPDFPDA 493
Cdd:COG1729     85 KARATLEELIKKYPDSEAA 103
TPR_12 pfam13424
Tetratricopeptide repeat;
115-179 6.23e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 6.23e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  115 LLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 179
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
TPR_17 pfam13431
Tetratricopeptide repeat;
309-342 8.30e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 43.30  E-value: 8.30e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  309 TYRRAIELQPNFPDAYCNLANALKEKGQVVDAEE 342
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
Ycf37 COG5714
Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; ...
 209-288 8.64e-06

Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf37, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444424 [Multi-domain]  Cd Length: 176  Bit Score: 47.24  E-value: 8.64e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  209 LKAIETRPD--FAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNN 286
Cdd:COG5714     79 LKAAEEEEPenLALIYNALGFAYFAQEQYDLAIRQYKEALKLKPDYVTALNNLGHAYEKKKLTAQALETYEEALKLDPNN 158


                   ..
gi 1496288059  287 AV 288
Cdd:COG5714    159 KT 160
TPR_19 pfam14559
Tetratricopeptide repeat;
164-223 1.20e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 43.73  E-value: 1.20e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  164 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAVAWS 223
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 238-454 1.21e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 49.70  E-value: 1.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNN-----------------AVVHGNLAcvyYEQ 300
Cdd:PRK11447   288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSsnrdkwesllkvnrywlLIQQGDAA---LKA 364

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  301 GLIDLAVDTYRRAIELQPNfpDAYC--NLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGyieeatrly 378
Cdd:PRK11447   365 NNLAQAERLYQQARQVDNT--DSYAvlGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS--------- 433

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288059  379 lkalevfPEFAAAHSNLASVLQQQ--GKLTEALMHykeairiqptfaDAYSNMGNTLKEMQDVAGALQCYTRAIQINP 454
Cdd:PRK11447   434 -------PEKALAFIASLSASQRRsiDDIERSLQN------------DRLAQQAEALENQGKWAQAAELQRQRLALDP 492
TPR_1 pfam00515
Tetratricopeptide repeat;
321-354 1.27e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.79  E-value: 1.27e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  321 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 354
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
430-471 1.30e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 43.23  E-value: 1.30e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1496288059  430 GNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSG 471
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 367-451 1.56e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.98  E-value: 1.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  367 EQGYIEEATRLYLKALEVFPE---FAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPT---FADAYSNMGNTLKEMQDVA 440
Cdd:COG1729      5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84

                           90
                   ....*....|.
gi 1496288059  441 GALQCYTRAIQ 451
Cdd:COG1729     85 KARATLEELIK 95
TPR_1 pfam00515
Tetratricopeptide repeat;
423-454 1.61e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 1.61e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1496288059  423 ADAYSNMGNTLKEMQDVAGALQCYTRAIQINP 454
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 238-323 1.83e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.98  E-value: 1.83e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHG---NLACVYYEQGLIDLAVDTYR 311
Cdd:COG1729     12 AIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKARATLE 91

                           90
                   ....*....|..
gi 1496288059  312 RAIELQPNFPDA 323
Cdd:COG1729     92 ELIKKYPDSEAA 103
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 117-149 2.14e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 42.12  E-value: 2.14e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1496288059  117 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 149
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_11 pfam13414
TPR repeat;
192-229 2.50e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 42.46  E-value: 2.50e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1496288059  192 GNLLKALGRLDEAKACYLKAIETRPDFAVAWSNLGCVF 229
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAY 38
TPR_11 pfam13414
TPR repeat;
260-301 2.96e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 42.07  E-value: 2.96e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1496288059  260 GNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQG 301
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 321-354 3.51e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.66  E-value: 3.51e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   321 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 354
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
287-320 4.02e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.64  E-value: 4.02e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  287 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF 320
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 287-320 4.99e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 4.99e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   287 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF 320
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
208-378 5.15e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 46.03  E-value: 5.15e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  208 YLKAIETRPDFAVAWSNLGCVFNAQSEIWLAihhfEKAVALDPNFlDAYINLGNVLKEARIFDRAVAAYLRALN-LSPNN 286
Cdd:COG4700     49 VLPELRNSRDARRVQRAARNALDPGRELREL----EKALEFADTV-QNRVRLADALLELGRYDEAIELYEEALTgIFADD 123

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  287 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF--PDAYCNLANALKEKGQVVDAEECYNTALRlCPSHADSLNNLANI 364
Cdd:COG4700    124 PHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLEAAEAELEALAR-RYSGPEARYRYAKF 202

                          170
                   ....*....|....
gi 1496288059  365 KREQGYIEEATRLY 378
Cdd:COG4700    203 LARQGRTAEAKELL 216
TPR_1 pfam00515
Tetratricopeptide repeat;
389-422 5.39e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.25  E-value: 5.39e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  389 AAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTF 422
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
457-490 5.55e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.25  E-value: 5.55e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  457 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDF 490
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
362-403 6.82e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 40.92  E-value: 6.82e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1496288059  362 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 403
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_12 pfam13424
Tetratricopeptide repeat;
183-251 7.14e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.99  E-value: 7.14e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  183 DLYCVRSDLGNLLKALGRLDEAKACYLKAIE--------TRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPN 251
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 389-422 8.00e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 8.00e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   389 AAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTF 422
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
255-316 8.03e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.99  E-value: 8.03e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  255 AYINLGNVLKEARIFDRAVAAYLRALNL--------SPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIEL 316
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 105-213 8.57e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.70  E-value: 8.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  105 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-----------FIDG-----YIN------------ 156
Cdd:cd24142     22 FLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekylylgqLSGGeealqYYEkgieileeelqa 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  157 ------------------LAAALVAAG-----------DMEQAVQAYVT-ALQYNPDLYCVRSDLGNLLKALGRLDEAKA 206
Cdd:cd24142    102 lqaasaeaeeeaeelkrkLSSALCALAeiymtdlcdepDAEQRCEELITkALELDPTNPEALQTLASLRISQQRPDEAKE 181


                   ....*..
gi 1496288059  207 CYLKAIE 213
Cdd:cd24142    182 ALRRSLE 188
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 457-490 8.91e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 8.91e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   457 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDF 490
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
128-265 9.10e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 45.26  E-value: 9.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  128 KERGQLQEALENyrhavrlkPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ--YNPDLYcVRSDLGNLLKALGRLDEAK 205
Cdd:COG4700     74 RELRELEKALEF--------ADTVQNRVRLADALLELGRYDEAIELYEEALTgiFADDPH-ILLGLAQALFELGRYAEAL 144

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288059  206 ACYLKAIETRPDFAVAWSNL--GCVFNAQSEIWLAIHHFEKAVALDPNFlDAYINLGNVLKE 265
Cdd:COG4700    145 ETLEKLIAKNPDFKSSDAHLlyARALEALGDLEAAEAELEALARRYSGP-EARYRYAKFLAR 205
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 423-456 9.45e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 9.45e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   423 ADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAF 456
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
219-252 1.28e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.28e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  219 AVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNF 252
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_19 pfam14559
Tetratricopeptide repeat;
131-183 1.49e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 40.65  E-value: 1.49e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  131 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 183
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPD 54
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 114-409 1.85e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.68  E-value: 1.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  114 PLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LKPDFIDGYI-----NLAAALVAAGDMEQAV-------QAYVT 176
Cdd:NF040586   431 RQTLRLRFHLANALRSLGRYEEARELDEDTLErqrrvLGLGEDHPHTlmtagGLGADLRALGRFREALeldeetlERHRR 510

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  177 AL-QYNPDLYCVRSDLGNLLKALGRLDEAKAcylkaIETRpdfavawsnlgcVFNAQSEIWlaihhfekaVALDPNFLDA 255
Cdd:NF040586   511 VFgEDHPRTLRAANNLAVSLRLLGDYREALE-----LDRE------------VLRRRRRVL---------GPDHPRTLLS 564

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  256 YINLGNVLKEARIFDRAVA------AYLRALNLSPNNAVVHG---NLACVYYEQGLID----LAVDTYRRAIELQ-PNFP 321
Cdd:NF040586   565 ANNLARDLRELGRYAEALDlleealERYREVLGGPDHPDTLRaakSLAVALRRAGRLEealeLAEDTYERYRRRFgPDHP 644

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  322 D---AYCNLANALKEKGQVVDA----EECYNT-ALRLCPSHADSL---NNLANIKREQGYIEEATRLYLKALEVF----- 385
Cdd:NF040586   645 DtlaAALSLANDLRALGDADEArelaREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAALEGLrerlg 724

                          330       340
                   ....*....|....*....|....*..
gi 1496288059  386 ---PEFAAAHSNLASVLQQQGKLTEAL 409
Cdd:NF040586   725 pdhPYTLAAAVNLANDLAALGDLDAAL 751
TPR_12 pfam13424
Tetratricopeptide repeat;
85-149 2.29e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.83  E-value: 2.29e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059   85 VLLLLSSIHFQCRRLDKS--------AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 149
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEAlellekalEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 292-418 2.37e-04

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 44.26  E-value: 2.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  292 NLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLA-----NALKEKGQVvdaeecynTALRLCPSHADSLNNLANIKR 366
Cdd:cd24145    152 ELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHslvlmNNEAAELAL--------HALRKPLSSTLIEASRLPQKS 223

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  367 EQGYIEEATRLYLKALEVF---------PE----FAAAHSNLASVLQQQGKLTEALMHYKEAIRI 418
Cdd:cd24145    224 RDQLLEAALKWAQKALDVAksikpkdrdPEcdqaCALALYNLGVIAEMLGNLDEARKLYKEAISL 288
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 115-340 2.45e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.54  E-value: 2.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  115 LLAEAysnlgNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD------LYcvr 188
Cdd:cd24142      3 LLEKA-----EELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekyLY--- 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  189 sdLGNLLKALgrldEAKACYLKAIE-------TRPDFAVAWSNLGCVFNAQ--------SEIWLAIHHFE---------- 243
Cdd:cd24142     75 --LGQLSGGE----EALQYYEKGIEileeelqALQAASAEAEEEAEELKRKlssalcalAEIYMTDLCDEpdaeqrceel 148

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  244 --KAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNL--------SPNNAVVHGNLACVYYEQGLIDLA-----VD 308
Cdd:cd24142    149 itKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwkdlkeedEEEAEEDEAEEEDVPSYEFRISLAkllieLE 228

                          250       260       270
                   ....*....|....*....|....*....|..
gi 1496288059  309 TYRRAIELqpnfpdaycnLANALKEKGQVVDA 340
Cdd:cd24142    229 MYEEALEV----------LEQLLDEDDEDVEV 250
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 272-352 2.50e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 43.12  E-value: 2.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  272 AVAAYLRALNL--SPNN-AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLA-------NALKEKGQVVDAE 341
Cdd:PRK02603    54 ALENYEEALKLeeDPNDrSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAviyhkrgEKAEEAGDQDEAE 133

                           90
                   ....*....|....*...
gi 1496288059  342 ECYNT-------ALRLCP 352
Cdd:PRK02603   134 ALFDKaaeywkqAIRLAP 151
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 157-218 2.50e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 44.80  E-value: 2.50e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  157 LAAALVAAGDMEQAVQAYVTALQYNPDlyCVRS--DLGNLLKALGRLDEAKACYLKAIETRPDF 218
Cdd:PRK11788   186 LAQQALARGDLDAARALLKKALAADPQ--CVRAsiLLGDLALAQGDYAAAIEALERVEEQDPEY 247
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 250-318 2.77e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 43.69  E-value: 2.77e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288059  250 PNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQP 318
Cdd:NF033920   187 PDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
TPR_12 pfam13424
Tetratricopeptide repeat;
287-353 3.36e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.06  E-value: 3.36e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  287 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQ-----PNFPD---AYCNLANALKEKGQVVDAEECYNTALRLCPS 353
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHPLtatTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_8 pfam13181
Tetratricopeptide repeat;
117-149 3.99e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 38.53  E-value: 3.99e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1496288059  117 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 149
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 219-252 4.97e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 4.97e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1496288059   219 AVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNF 252
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
120-218 5.01e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.95  E-value: 5.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  120 YSNLGNVYKERGQLQEALENYRHAvrLKPDFIDGYI---NLAAALVAAGDMEQAVQAYVTALQYNPDLYcvRSD----LG 192
Cdd:COG4700     92 RVRLADALLELGRYDEAIELYEEA--LTGIFADDPHillGLAQALFELGRYAEALETLEKLIAKNPDFK--SSDahllYA 167

                           90       100
                   ....*....|....*....|....*.
gi 1496288059  193 NLLKALGRLDEAKACYLKAIETRPDF 218
Cdd:COG4700    168 RALEALGDLEAAEAELEALARRYSGP 193
TPR_1 pfam00515
Tetratricopeptide repeat;
191-218 5.21e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 5.21e-04
                           10        20
                   ....*....|....*....|....*...
gi 1496288059  191 LGNLLKALGRLDEAKACYLKAIETRPDF 218
Cdd:pfam00515    7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
StaR_like cd05804
StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member ...
 148-308 5.32e-04

StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.


Pssm-ID: 100115 [Multi-domain]  Cd Length: 355  Bit Score: 43.43  E-value: 5.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  148 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDlycvRSD---------LGNLLKalGRLDEAKACYLKAIETRPDF 218
Cdd:cd05804      3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA----RATererahveaLSAWIA--GDLPKALALLEQLLDDYPRD 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  219 AVAWSNLGCVFN--AQSEIWL----AIHHFEKAVALDPNFLDAYinlGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGN 292
Cdd:cd05804     77 LLALKLHLGAFGlgDFSGMRDhvarVLPLWAPENPDYWYLLGML---AFGLEEAGQYDRAEEAARRALELNPDDAWAVHA 153

                          170
                   ....*....|....*.
gi 1496288059  293 LACVYYEQGLIDLAVD 308
Cdd:cd05804    154 VAHVLEMQGRFKEGIA 169
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 292-355 6.08e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.24  E-value: 6.08e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  292 NLACVYYEQGLIDLAVDTYRRAIELQPNFPD---AYCNLANALKEKGQVVDAEECYNTALRLCPSHA 355
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 321-352 7.87e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.89  E-value: 7.87e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1496288059  321 PDAYCNLANALKEKGQVVDAEECYNTALRLCP 352
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
TPR_17 pfam13431
Tetratricopeptide repeat;
109-138 8.90e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.52  E-value: 8.90e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 1496288059  109 AIKQNPLLAEAYSNLGNVYKERGQLQEALE 138
Cdd:pfam13431    5 ALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_10 pfam13374
Tetratricopeptide repeat;
116-146 9.41e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 37.87  E-value: 9.41e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1496288059  116 LAEAYSNLGNVYKERGQLQEALENYRHAVRL 146
Cdd:pfam13374    1 TASSLNNLANALRAQGRYDEAEELLEEALAI 31
TPR_11 pfam13414
TPR repeat;
328-369 1.08e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 1.08e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1496288059  328 ANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQG 369
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 457-489 1.15e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 1.15e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1496288059  457 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPD 489
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 265-536 1.18e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.98  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  265 EARIFDRAVAAYLRALnLSPNNA---VVHGNLACVY-----YEQGLiDLAVDTYRRAIELQ-PNFPD---AYCNLANALK 332
Cdd:NF040586   496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLgPDHPRtllSANNLARDLR 573

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  333 EKGQVVDA----EECYNTALRLC--PSHADSLN---NLANIKREQGYIEEA----TRLYLKALEVF----PEFAAAHSNL 395
Cdd:NF040586   574 ELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEAlelaEDTYERYRRRFgpdhPDTLAAALSL 653

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  396 ASVLQQQGKLTEALMHYKEAIRIQP---------TFAdAYSNMGNTLKEMQDVAGALQCYTRAI-QINPAFADAH----- 460
Cdd:NF040586   654 ANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpytla 732

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  461 --SNLASIHKDSGNIPEAIQS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYEARMKKLVSIVAEQLD 526
Cdd:NF040586   733 aaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLARLR 808

                          330
                   ....*....|
gi 1496288059  527 KnRLPSVHPH 536
Cdd:NF040586   809 R-VLGPDHPD 817
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 238-335 1.20e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.81  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  238 AIHHFEKAVALDPNFLD-AYI--NLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQG------------- 301
Cdd:PRK02603    54 ALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGekaeeagdqdeae 133

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1496288059  302 -LIDLAVDTYRRAIELQPNfpdAYCNLANALKEKG 335
Cdd:PRK02603   134 aLFDKAAEYWKQAIRLAPN---NYIEAQNWLKTTG 165
TPR_8 pfam13181
Tetratricopeptide repeat;
191-217 1.21e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 37.38  E-value: 1.21e-03
                           10        20
                   ....*....|....*....|....*..
gi 1496288059  191 LGNLLKALGRLDEAKACYLKAIETRPD 217
Cdd:pfam13181    7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
466-553 1.27e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 1.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  466 IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLqivCDWTDYEA--RMKKlvsivAEQLDKNRlPSVHPHHSMLYPL 543
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL---LEQGRYDEaiALEK-----ALKLDPNN-AEALLNLAELLLE 71

                           90
                   ....*....|
gi 1496288059  544 THDYRKAIAA 553
Cdd:COG3063     72 LGDYDEALAY 81
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 437-491 1.39e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 42.98  E-value: 1.39e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  437 QDVAGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFP 491
Cdd:PRK09782   590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 360-420 1.49e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.09  E-value: 1.49e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288059  360 NLANIKREQGYIEEATRLYLKALEVF---PEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQP 420
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 423-454 1.87e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.73  E-value: 1.87e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1496288059  423 ADAYSNMGNTLKEMQDVAGALQCYTRAIQINP 454
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
254-286 2.07e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 2.07e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1496288059  254 DAYINLGNVLKEARIFDRAVAAYLRALNLSPNN 286
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_17 pfam13431
Tetratricopeptide repeat;
411-444 2.33e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 36.37  E-value: 2.33e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  411 HYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQ 444
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_17 pfam13431
Tetratricopeptide repeat;
377-409 2.38e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 36.37  E-value: 2.38e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1496288059  377 LYLKALEVFPEFAAAHSNLASVLQQQGKLTEAL 409
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 254-286 2.40e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 2.40e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 1496288059   254 DAYINLGNVLKEARIFDRAVAAYLRALNLSPNN 286
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_19 pfam14559
Tetratricopeptide repeat;
402-466 3.05e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 3.05e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  402 QGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASI 466
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 269-392 3.22e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 40.95  E-value: 3.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  269 FDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF-PDAYCNLANALKEKGQVVDAEECYNTA 347
Cdd:PRK11788   196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYlSEVLPKLMECYQALGDEAEGLEFLRRA 275

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1496288059  348 LRLCPShADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 392
Cdd:PRK11788   276 LEEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319
TPR_10 pfam13374
Tetratricopeptide repeat;
355-384 3.29e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 3.29e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1496288059  355 ADSLNNLANIKREQGYIEEATRLYLKALEV 384
Cdd:pfam13374    2 ASSLNNLANALRAQGRYDEAEELLEEALAI 31
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 119-248 3.38e-03

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 40.80  E-value: 3.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  119 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAagdmeQAVQAYVTALQYNPDLYCVRSDLGNLLKA- 197
Cdd:cd24145    149 FLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLM-----NNEAAELALHALRKPLSSTLIEASRLPQKs 223

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  198 -LGRLDEAKACYLKAIE----TRPD---------FAVAWSNLGCVFNAQSEIWLAIHHFEKAVAL 248
Cdd:cd24145    224 rDQLLEAALKWAQKALDvaksIKPKdrdpecdqaCALALYNLGVIAEMLGNLDEARKLYKEAISL 288
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
326-451 3.75e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.25  E-value: 3.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  326 NLANALKEKGQVVDAEECYNTALRLcpSHADS---LNNLANIKREQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQ 400
Cdd:COG4700     94 RLADALLELGRYDEAIELYEEALTG--IFADDphiLLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALE 171

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288059  401 QQGKLTEALMHYKEAIRIQPTF------ADAYSNMGNT------LKEMQDVAGALQCYTRAIQ 451
Cdd:COG4700    172 ALGDLEAAEAELEALARRYSGPearyryAKFLARQGRTaeakelLEEILDEAKHMPKHYRRLN 234
TPR_19 pfam14559
Tetratricopeptide repeat;
438-494 4.43e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.79  E-value: 4.43e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  438 DVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAY 494
Cdd:pfam14559    3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 335-434 4.87e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 39.27  E-value: 4.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  335 GQVVDAEECYNTALRLCPSHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL-------QQQGK 404
Cdd:PRK02603    49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYhkrgekaEEAGD 128

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1496288059  405 LTEALMHY-------KEAIRIQPtfaDAYSNMGNTLK 434
Cdd:PRK02603   129 QDEAEALFdkaaeywKQAIRLAP---NNYIEAQNWLK 162
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 258-319 5.09e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 5.09e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  258 NLGNVLKEARIFDRAVAAYLRAL---NLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPN 319
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 269-405 5.11e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 40.37  E-value: 5.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  269 FDRAVAAYLRALNL-----SPNNAVVH-GNLACVYYEQGLIDLAVDTYRRAIELQP-----NFP---DAYCNLANALKEK 334
Cdd:pfam17874   56 LDAALQAMREAEALarradSPHVTLWAlLQQGEILRAQGRLHQALETYQQALQLARdhglqHLPlhgFLLVGLADLLYEW 135

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  335 GQVVDAEECYNTALRLC---PSHA--DSLNNLANIKREQGYIEEATRLYLKALEV---FPEFAAAHSNLASV----LQQQ 402
Cdd:pfam17874  136 NDLEEAEQHAQQGIQLGrqwEPDAavDAYVLLARIALAQGELEEALTLLRRAELLarqSFFHVDWLANAERVrvrlWLAR 215


                   ...
gi 1496288059  403 GKL 405
Cdd:pfam17874  216 GDL 218
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 191-218 5.17e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 5.17e-03
                            10        20
                    ....*....|....*....|....*...
gi 1496288059   191 LGNLLKALGRLDEAKACYLKAIETRPDF 218
Cdd:smart00028    7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_19 pfam14559
Tetratricopeptide repeat;
238-294 5.62e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.41  E-value: 5.62e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288059  238 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLA 294
Cdd:pfam14559    7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
ycf3 CHL00033
photosystem I assembly protein Ycf3
 130-264 6.11e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 38.84  E-value: 6.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  130 RGQLQEALENYRHAVRLKPDFID-GYI--NLAAALVAAGDMEQAVQAYVTALQYNPdlycvrsdlgNLLKALGRLdeAKA 206
Cdd:CHL00033    48 EGEYAEALQNYYEAMRLEIDPYDrSYIlyNIGLIHTSNGEHTKALEYYFQALERNP----------FLPQALNNM--AVI 115

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288059  207 CY---LKAIET-RPDFAVAWsnlgcvFNAQSEIWlaihhfEKAVALDPNfldAYINLGNVLK 264
Cdd:CHL00033   116 CHyrgEQAIEQgDSEIAEAW------FDQAAEYW------KQAIALAPG---NYIEAQNWLK 162
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 428-489 6.64e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.16  E-value: 6.64e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288059  428 NMGNTLKEMQDVAGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPD 489
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 157-451 6.68e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.89  E-value: 6.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  157 LAAALVAA-----------GDMEQAVQAYVTALQYNPdlycvrSDLGNLLKA------LGRLDEAKACYLKAIETRPDFA 219
Cdd:COG3071     11 LAAAVLLAallegllalaeGRYARAEKLLSKAAEHSE------APLLAYLLAaraaqaLGDYERRDEYLAQALELAPEAE 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  220 VAwsnlgcVFNAQSEIWLAIHHFEKAVAL-------DPN-------FLDAYINLGNvlkearifDRAVAAYLRAL----N 281
Cdd:COG3071     85 LA------VLLTRAELLLDQGQAEQALATlealragAPRhpqvlrlLLQAYRQLGD--------WEELLELLPALrkhkA 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  282 LSPNNAVVHGNLAcvyyEQGLIDLAVDTYRRAIELQPNFPDAY-------CNLANALKEKGQVVDAEECYNTALRLCPsH 354
Cdd:COG3071    151 LSAEEAQALERRA----YLGLLRQAARDAEALKALWKALPRAErrdpelaAAYARALIALGDHDEAERLLREALKRQW-D 225

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  355 ADSLNNLANIKREQgyIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTfADAYSNMGNTLK 434
Cdd:COG3071    226 PRLVRLYGRLQGGD--PAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLE 302

                          330
                   ....*....|....*..
gi 1496288059  435 EMQDVAGALQCYTRAIQ 451
Cdd:COG3071    303 QLGDPEEAAEHYRKALA 319
TPR_17 pfam13431
Tetratricopeptide repeat;
445-478 6.96e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.21  E-value: 6.96e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288059  445 CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQ 478
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 115-214 6.98e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 39.07  E-value: 6.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288059  115 LLAEAYSNLGNVYKERGQLQEALEN-----YRHAVRLkpdfidgyiNLAAALVAAGDMEQAVQAY--VTALQYNPDLYCV 187
Cdd:COG2976     95 LLAKAAVDAGDLDKAAAQLQWVLDNakdpaLKALARL---------RLARVLLAQKKYDEALATLdaVKPEAFAALYAEL 165

                           90       100
                   ....*....|....*....|....*..
gi 1496288059  188 RSDLgnlLKALGRLDEAKACYLKAIET 214
Cdd:COG2976    166 RGDI---LLAQGDKAEARAAYQKALAA 189
TPR_1 pfam00515
Tetratricopeptide repeat;
151-183 8.53e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 8.53e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1496288059  151 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 183
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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