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Conserved domains on  [gi|1496288061|ref|XP_026734192|]
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UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2 [Trichoplusia ni]

Protein Classification

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase( domain architecture ID 20425175)

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, also called O-linked N-acetylglucosamine transferase (OGT), is a glycosyltransferase family 41 protein containing tetratricopeptide (TPR) repeats that catalyzes the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 306-840 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


:

Pssm-ID: 404688  Cd Length: 543  Bit Score: 1144.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 306 VCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLCLEKVQVLHKLPFNFPRELQ---GR 382
Cdd:pfam13844   1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSlsgGR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 383 LRIGYVSSDFGNHPTSHLMQSVPGLHDRTKVEIFCYALSPDDGTTFRSKIAREAEHFTDLSQMQCNGKAADKIYADGIHI 462
Cdd:pfam13844  81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 463 LVNMNGYTKGARNEIFALRPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFVGDHKQMFPHL 542
Cdd:pfam13844 161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 543 QERLILSDKvkshNNLGSVADNVAVINATDLSPLVENTDIKE-IKEIVRAA--------RPVEISLKVAELPTTTPIETM 613
Cdd:pfam13844 241 KERAIVTDK----SDGTKVRDNVAVVNATDLKPLLEKTEVKDkVKEVVVVEttgnsrdsSKVEVVLPVIELPTTEPIESM 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 614 IASGQVQTSVNGVILQNGLATTQTNNKAATGEEVPQSIVITTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVP 693
Cdd:pfam13844 317 IQSGQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVP 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 694 NSVLWLLRFPAVGEPNLQATAQQLGLPPGRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGE 773
Cdd:pfam13844 397 NSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGE 476

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061 774 TLASRVAASQLNTLGCPELIARTRQEYQDIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGL 840
Cdd:pfam13844 477 TLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 40-287 3.28e-48

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 172.61  E-value: 3.28e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 119
Cdd:COG2956    27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 120 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 199
Cdd:COG2956   107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAE 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 200 VLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAI 279
Cdd:COG2956   187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAAL 265


                  ....*...
gi 1496288061 280 QSYRTALK 287
Cdd:COG2956   266 ALLERQLR 273
TPR_1 pfam00515
Tetratricopeptide repeat;
21-54 8.56e-05

Tetratricopeptide repeat;


:

Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 8.56e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061  21 AVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNF 54
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 306-840 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1144.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 306 VCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLCLEKVQVLHKLPFNFPRELQ---GR 382
Cdd:pfam13844   1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSlsgGR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 383 LRIGYVSSDFGNHPTSHLMQSVPGLHDRTKVEIFCYALSPDDGTTFRSKIAREAEHFTDLSQMQCNGKAADKIYADGIHI 462
Cdd:pfam13844  81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 463 LVNMNGYTKGARNEIFALRPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFVGDHKQMFPHL 542
Cdd:pfam13844 161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 543 QERLILSDKvkshNNLGSVADNVAVINATDLSPLVENTDIKE-IKEIVRAA--------RPVEISLKVAELPTTTPIETM 613
Cdd:pfam13844 241 KERAIVTDK----SDGTKVRDNVAVVNATDLKPLLEKTEVKDkVKEVVVVEttgnsrdsSKVEVVLPVIELPTTEPIESM 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 614 IASGQVQTSVNGVILQNGLATTQTNNKAATGEEVPQSIVITTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVP 693
Cdd:pfam13844 317 IQSGQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVP 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 694 NSVLWLLRFPAVGEPNLQATAQQLGLPPGRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGE 773
Cdd:pfam13844 397 NSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGE 476

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061 774 TLASRVAASQLNTLGCPELIARTRQEYQDIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGL 840
Cdd:pfam13844 477 TLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 92-851 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 573.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  92 HGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIK---- 167
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAllel 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 168 -----REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVA 242
Cdd:COG3914    84 aalllQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 243 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLvsi 322
Cdd:COG3914   164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL--- 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 323 vaEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLClEKVQVLHKLPFNFPRELQGRLRIGYVSSDFGNHPTSHLMQ 402
Cdd:COG3914   241 --AALARGPSELSPFALLYLPDDDPAELLALARAWAQLV-AAAAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLE 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 403 SVPGLHDRTKVEIFCYALSPDDGTTfRSKIAREAEHFTDLSQMqCNGKAADKIYADGIHILVNMNGYTKGARNEIFALRP 482
Cdd:COG3914   318 PLLEHHDRSRFEIYAYSTGPDDDAL-TQRLRAAADHWRDIPGL-SDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRP 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 483 APVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFvgdhkqmfphlqerlilsdkvkshnnlgsva 562
Cdd:COG3914   396 APVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL------------------------------- 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 563 dnvavinatdlsplventdikeikeivrAARPVEISLKVAELPtttpietmiasgqvqtsvngvilqnglattqtnnkaa 642
Cdd:COG3914   445 ----------------------------CYQPNDRAPEVAPLP------------------------------------- 459

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 643 tgeevpqsivitTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVPNSVLWLLRFP-AVGEPNLQATAQQLGLPP 721
Cdd:COG3914   460 ------------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARERLRAAAAARGVDP 527

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 722 GRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGETLASRVAASQLNTLGCPELIARTRQEYQ 801
Cdd:COG3914   528 DRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSEEEYV 607

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|
gi 1496288061 802 DIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGLEMLYNKMWQRY 851
Cdd:COG3914   608 ALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 40-287 3.28e-48

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 172.61  E-value: 3.28e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 119
Cdd:COG2956    27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 120 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 199
Cdd:COG2956   107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAE 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 200 VLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAI 279
Cdd:COG2956   187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAAL 265


                  ....*...
gi 1496288061 280 QSYRTALK 287
Cdd:COG2956   266 ALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 12-364 5.57e-31

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 130.97  E-value: 5.57e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  12 KAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVV 91
Cdd:TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  92 HGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQG 171
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 172 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRA 251
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 252 IQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAhclQIVCDWTDYEArMKKLVSIVAEQldKNR 331
Cdd:TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA---QLLLAAKRTES-AKKIAKSLQKQ--HPK 701

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1496288061 332 LPSVHPHHSMLYPLTHDYRKAIAARHANLCLEK 364
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 44-342 4.19e-15

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 78.32  E-value: 4.19e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  44 FEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFP 123
Cdd:NF033758   75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPDDA 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 124 DAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 203
Cdd:NF033758  155 SSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTALKVMMRSYLDRKQLAMAKLVALRAVKIDQNDPELHHTVGLILLQ 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 204 QGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYR 283
Cdd:NF033758  235 EGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLRRILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYD 314

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288061 284 TALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKlvSIVAEQLDKNRLPSVHPHHSML 342
Cdd:NF033758  315 EAEKLDPELAAIYLNRAIILHRVKDAPERAVELYK--KYIAMAGGEVALNAEAPVFGLL 371
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 99-315 1.01e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 66.88  E-value: 1.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  99 YYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH-ADSLNNLANIkrEQGyiEEAT 177
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 178 RLYLKALEVfpefaaahsnLASVLQQQGKLTEALMHYKEAIRIQPtfADAYSNMGntlkE--MQD---VAGA----LQCY 248
Cdd:cd24142    86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELKRKL--SSALCALA----EiyMTDlcdEPDAeqrcEELI 149

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288061 249 TRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYEAR 315
Cdd:cd24142   150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 123-222 2.33e-11

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 64.88  E-value: 2.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 123 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 202
Cdd:NF033920  156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                          90       100
                  ....*....|....*....|
gi 1496288061 203 QQGKLTEALMHYKEAIRIQP 222
Cdd:NF033920  236 AQGCTAQARAAAECALALAP 255
TPR_11 pfam13414
TPR repeat;
98-137 4.57e-09

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 52.47  E-value: 4.57e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1496288061  98 VYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKG 137
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 38-292 4.94e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 53.93  E-value: 4.94e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   38 WLAIH----------------HFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSP-NNAVVHGnLACVYY 100
Cdd:PRK11447   352 WLLIQqgdaalkannlaqaerLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTNAVRG-LANLYR 430

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  101 EQG-------LIDL------AVDTYRRAIELqpnfpDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIK 167
Cdd:PRK11447   431 QQSpekalafIASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  168 REQGYIEEATRLYLKALEVFP-------------------EFAAAHSN-------------------------LASVLQQ 203
Cdd:PRK11447   506 RQAGQRSQADALMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsdqvleTANRLRD 585

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  204 QGKLTEA--LMHYKEA-IRIQPTFADAYSNMGntlkemqDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAiq 280
Cdd:PRK11447   586 SGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA-- 656

                          330
                   ....*....|..
gi 1496288061  281 syRTALKLKPDF 292
Cdd:PRK11447   657 --RAQLAKLPAT 666
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 96-188 2.38e-06

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 49.86  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  96 ACVYYEQ-GLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIE 174
Cdd:NF033920  162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                          90
                  ....*....|....
gi 1496288061 175 EATRLYLKALEVFP 188
Cdd:NF033920  242 QARAAAECALALAP 255
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 123-156 2.28e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 2.28e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288061  123 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 156
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
21-54 8.56e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 8.56e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061  21 AVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNF 54
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 52-120 1.82e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 44.08  E-value: 1.82e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288061  52 PNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQP 120
Cdd:NF033920  187 PDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 51-211 2.02e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.29  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  51 DPNFLDAYINLGNVLKEARIFDRAVA------AYLRALNLSPNNAVVHG---NLACVYYEQGLID----LAVDTYRRAIE 117
Cdd:NF040586  558 HPRTLLSANNLARDLRELGRYAEALDlleealERYREVLGGPDHPDTLRaakSLAVALRRAGRLEealeLAEDTYERYRR 637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 118 LQ-PNFPD---AYCNLANALKEKGQVVDA----EECYNT-ALRLCPSHADSL---NNLANIKREQGYIEEATRLYLKALE 185
Cdd:NF040586  638 RFgPDHPDtlaAALSLANDLRALGDADEArelaREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAALE 717

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1496288061 186 VFPE----------FAAAhsNLASVLQQQGKLTEAL 211
Cdd:NF040586  718 GLRErlgpdhpytlAAAV--NLANDLAALGDLDAAL 751
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 21-54 3.23e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 3.23e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288061   21 AVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNF 54
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 67-338 5.71e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 43.75  E-value: 5.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  67 EARIFDRAVAAYLRALnLSPNNA---VVHGNLACVY-----YEQGLiDLAVDTYRRAIELQ-PNFPD---AYCNLANALK 134
Cdd:NF040586  496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLgPDHPRtllSANNLARDLR 573

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 135 EKGQVVDA----EECYNTALRLC--PSHADSLN---NLANIKREQGYIEEA----TRLYLKALEVF----PEFAAAHSNL 197
Cdd:NF040586  574 ELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEAlelaEDTYERYRRRFgpdhPDTLAAALSL 653

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 198 ASVLQQQGKLTEALMHYKEAIRIQP---------TFAdAYSNMGNTLKEMQDVAGALQCYTRAI-QINPAFADAH----- 262
Cdd:NF040586  654 ANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpytla 732

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 263 --SNLASIHKDSGNIPEAIQS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYEARMKKLVSIVAEQLD 328
Cdd:NF040586  733 aaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLARLR 808

                         330
                  ....*....|
gi 1496288061 329 KnRLPSVHPH 338
Cdd:NF040586  809 R-VLGPDHPD 817
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 306-840 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1144.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 306 VCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLCLEKVQVLHKLPFNFPRELQ---GR 382
Cdd:pfam13844   1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSlsgGR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 383 LRIGYVSSDFGNHPTSHLMQSVPGLHDRTKVEIFCYALSPDDGTTFRSKIAREAEHFTDLSQMQCNGKAADKIYADGIHI 462
Cdd:pfam13844  81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 463 LVNMNGYTKGARNEIFALRPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFVGDHKQMFPHL 542
Cdd:pfam13844 161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 543 QERLILSDKvkshNNLGSVADNVAVINATDLSPLVENTDIKE-IKEIVRAA--------RPVEISLKVAELPTTTPIETM 613
Cdd:pfam13844 241 KERAIVTDK----SDGTKVRDNVAVVNATDLKPLLEKTEVKDkVKEVVVVEttgnsrdsSKVEVVLPVIELPTTEPIESM 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 614 IASGQVQTSVNGVILQNGLATTQTNNKAATGEEVPQSIVITTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVP 693
Cdd:pfam13844 317 IQSGQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVP 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 694 NSVLWLLRFPAVGEPNLQATAQQLGLPPGRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGE 773
Cdd:pfam13844 397 NSVLWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGE 476

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061 774 TLASRVAASQLNTLGCPELIARTRQEYQDIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGL 840
Cdd:pfam13844 477 TLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 92-851 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 573.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  92 HGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIK---- 167
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAllel 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 168 -----REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVA 242
Cdd:COG3914    84 aalllQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 243 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLvsi 322
Cdd:COG3914   164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL--- 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 323 vaEQLDKNRLPSVHPHHSMLYPLTHDYRKAIAARHANLClEKVQVLHKLPFNFPRELQGRLRIGYVSSDFGNHPTSHLMQ 402
Cdd:COG3914   241 --AALARGPSELSPFALLYLPDDDPAELLALARAWAQLV-AAAAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLE 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 403 SVPGLHDRTKVEIFCYALSPDDGTTfRSKIAREAEHFTDLSQMqCNGKAADKIYADGIHILVNMNGYTKGARNEIFALRP 482
Cdd:COG3914   318 PLLEHHDRSRFEIYAYSTGPDDDAL-TQRLRAAADHWRDIPGL-SDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRP 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 483 APVQVMWLGYPGTSGASYMDYLVTDAVTSPVELASQYSEKLAYMPHTYFvgdhkqmfphlqerlilsdkvkshnnlgsva 562
Cdd:COG3914   396 APVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL------------------------------- 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 563 dnvavinatdlsplventdikeikeivrAARPVEISLKVAELPtttpietmiasgqvqtsvngvilqnglattqtnnkaa 642
Cdd:COG3914   445 ----------------------------CYQPNDRAPEVAPLP------------------------------------- 459

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 643 tgeevpqsivitTRQQYGLPDDAVVYCNFNQLYKIDPLTLHMWVYILKHVPNSVLWLLRFP-AVGEPNLQATAQQLGLPP 721
Cdd:COG3914   460 ------------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARERLRAAAAARGVDP 527

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 722 GRIIFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDILWTGTPVVTLPGETLASRVAASQLNTLGCPELIARTRQEYQ 801
Cdd:COG3914   528 DRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSEEEYV 607

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|
gi 1496288061 802 DIAVRLGTDREYLKGIRAKVWTARTDSPLFDCKAYATGLEMLYNKMWQRY 851
Cdd:COG3914   608 ALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 40-287 3.28e-48

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 172.61  E-value: 3.28e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 119
Cdd:COG2956    27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 120 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 199
Cdd:COG2956   107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAE 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 200 VLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAI 279
Cdd:COG2956   187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAAL 265


                  ....*...
gi 1496288061 280 QSYRTALK 287
Cdd:COG2956   266 ALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-304 1.59e-45

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 164.90  E-value: 1.59e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  71 FDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTAL 150
Cdd:COG2956    24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 151 RLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSN 230
Cdd:COG2956   104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL 183

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288061 231 MGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDfPDAYCNLAHCLQ 304
Cdd:COG2956   184 LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLE 256
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
116-332 6.45e-44

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 159.40  E-value: 6.45e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 116 IELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHS 195
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 196 NLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 275
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061 276 PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 332
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
48-228 1.29e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 158.25  E-value: 1.29e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  48 VALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYC 127
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 128 NLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKL 207
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180
                  ....*....|....*....|.
gi 1496288061 208 TEALMHYKEAIRIQPTFADAY 228
Cdd:COG0457   161 EEALELLEKLEAAALAALLAA 181
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
82-262 8.34e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 155.94  E-value: 8.34e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  82 LNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLN 161
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 162 NLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDV 241
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180
                  ....*....|....*....|.
gi 1496288061 242 AGALQCYTRAIQINPAFADAH 262
Cdd:COG0457   161 EEALELLEKLEAAALAALLAA 181
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
14-228 8.67e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 155.94  E-value: 8.67e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  14 IETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHG 93
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  94 NLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYI 173
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061 174 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAY 228
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 10-255 1.92e-42

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 156.04  E-value: 1.92e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  10 YLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNA 89
Cdd:COG2956    31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDA 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  90 VVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKRE 169
Cdd:COG2956   111 EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 170 QGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTfADAYSNMGNTLKEMQDVAGALQCYT 249
Cdd:COG2956   191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLE 269


                  ....*.
gi 1496288061 250 RAIQIN 255
Cdd:COG2956   270 RQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 99-332 5.63e-39

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 146.03  E-value: 5.63e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  99 YYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATR 178
Cdd:COG2956    18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 179 LYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAF 258
Cdd:COG2956    98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288061 259 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 332
Cdd:COG2956   178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
8-221 4.74e-35

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 133.98  E-value: 4.74e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   8 ACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPN 87
Cdd:COG0457    29 EDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  88 NAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIK 167
Cdd:COG0457   109 DAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1496288061 168 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQ 221
Cdd:COG0457   189 ALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 12-364 5.57e-31

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 130.97  E-value: 5.57e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  12 KAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVV 91
Cdd:TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  92 HGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQG 171
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 172 YIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRA 251
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 252 IQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAhclQIVCDWTDYEArMKKLVSIVAEQldKNR 331
Cdd:TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA---QLLLAAKRTES-AKKIAKSLQKQ--HPK 701

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1496288061 332 LPSVHPHHSMLYPLTHDYRKAIAARHANLCLEK 364
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 129-355 2.92e-30

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 120.99  E-value: 2.92e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 129 LANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLT 208
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 209 EALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKL 288
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061 289 KPDFPDAYCNLAHCLQIVCDWTDYEARMKKlvsivAEQLDKNRLPsVHPHHSMLYPLTHDYRKAIAA 355
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALER-----ALEQDPDYLP-ALPRLAELYEKLGDPEEALEL 234
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 157-292 1.06e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 106.04  E-value: 1.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 157 ADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLK 236
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288061 237 EMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDF 292
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 55-190 1.76e-25

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 102.58  E-value: 1.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  55 LDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALK 134
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288061 135 EKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEF 190
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 8-185 2.20e-25

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 106.74  E-value: 2.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   8 ACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPN 87
Cdd:COG2956    97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  88 NAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPShADSLNNLANIK 167
Cdd:COG2956   177 CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLL 255

                         170
                  ....*....|....*...
gi 1496288061 168 REQGYIEEATRLYLKALE 185
Cdd:COG2956   256 ERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 95-222 1.04e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 100.65  E-value: 1.04e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  95 LACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIE 174
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1496288061 175 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQP 222
Cdd:COG4783    90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 40-158 2.57e-23

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 96.23  E-value: 2.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 119
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1496288061 120 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHAD 158
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 124-258 3.48e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 96.03  E-value: 3.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 124 DAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 203
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061 204 QGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAF 258
Cdd:COG4783    85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 8-280 7.52e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 104.78  E-value: 7.52e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   8 ACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPN 87
Cdd:TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  88 NAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNfPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIK 167
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 168 REQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQgKLTEALMHYKEAIRI---QPTFADAYsnmGNTLKEMQDVAGA 244
Cdd:TIGR02917 781 LAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRA 856

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1496288061 245 LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQ 280
Cdd:TIGR02917 857 LPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 40-156 9.09e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 94.87  E-value: 9.09e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 119
Cdd:COG4783    23 AEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLD 102

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1496288061 120 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 156
Cdd:COG4783   103 PEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
43-253 1.05e-22

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 97.29  E-value: 1.05e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  43 HFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLsPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF 122
Cdd:COG4785    28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 123 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAsvlq 202
Cdd:COG4785   107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY---- 182

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1496288061 203 qqgkLTEALMHYKEAI-RIQPTFADAYSNMGNTlkemqdvAGALQCYTRAIQ 253
Cdd:COG4785   183 ----LAERKLDPEKALaLLLEDWATAYLLQGDT-------EEARELFKLALA 223
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 40-295 1.27e-22

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 104.01  E-value: 1.27e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIEL- 118
Cdd:TIGR02917  41 AIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLd 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 119 QPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLA 198
Cdd:TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 199 SVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 278
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDA 280

                         250
                  ....*....|....*..
gi 1496288061 279 IQSYRTALKLKPDFPDA 295
Cdd:TIGR02917 281 RETLQDALKSAPEYLPA 297
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
125-299 3.14e-22

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 96.14  E-value: 3.14e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 125 AYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVF------PEFAAAHSNLA 198
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdralalPDLAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 199 SVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 278
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                         170       180
                  ....*....|....*....|.
gi 1496288061 279 IQSYRTALKLKPDFPDAYCNL 299
Cdd:COG4785   161 IADLEKALELDPNDPERALWL 181
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 73-193 2.21e-21

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 90.84  E-value: 2.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  73 RAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRL 152
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1496288061 153 CPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAA 193
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 191-326 3.64e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 90.25  E-value: 3.64e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 191 AAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHK 270
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288061 271 DSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 326
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-122 5.37e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 89.87  E-value: 5.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   7 QACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSP 86
Cdd:COG4783    24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1496288061  87 NNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF 122
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 108-228 7.34e-21

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 89.29  E-value: 7.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 108 AVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVF 187
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1496288061 188 PEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAY 228
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-300 9.95e-21

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 98.23  E-value: 9.95e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   7 QACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSP 86
Cdd:TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  87 NNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANI 166
Cdd:TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 167 KREQGYIEEATRLYLKALEVFPEF----------------------------------AAAHSNLASVLQQQGKLTEALM 212
Cdd:TIGR02917 645 YAVMKNYAKAITSLKRALELKPDNteaqiglaqlllaakrtesakkiakslqkqhpkaALGFELEGDLYLRQKDYPAAIQ 724

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 213 HYKEAIRIQPTfADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDF 292
Cdd:TIGR02917 725 AYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803


                  ....*...
gi 1496288061 293 PDAYCNLA 300
Cdd:TIGR02917 804 AVVLNNLA 811
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 12-290 4.11e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 95.92  E-value: 4.11e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  12 KAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRA---------------VA 76
Cdd:TIGR02917 184 EVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAekhadallkkapnspLA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  77 AYLRA-------------------LNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKG 137
Cdd:TIGR02917 264 HYLKAlvdfqkknyedaretlqdaLKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG 343

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 138 QVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEA 217
Cdd:TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA 423

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 218 IRI----------------------------------QPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHS 263
Cdd:TIGR02917 424 AQLdpelgradlllilsylrsgqfdkalaaakklekkQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAA 503

                         330       340
                  ....*....|....*....|....*..
gi 1496288061 264 NLASIHKDSGNIPEAIQSYRTALKLKP 290
Cdd:TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDP 530
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 175-296 7.74e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 86.21  E-value: 7.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 175 EATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQI 254
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1496288061 255 NPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAY 296
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-295 2.15e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 93.61  E-value: 2.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  13 AIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVaAYLRALNL--SPNNAV 90
Cdd:TIGR02917  48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVL-DELPGKTLldDEGAAE 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  91 VHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQ 170
Cdd:TIGR02917 127 LLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 171 GYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTfadaySNMGNTLKEM-----QDVAGAL 245
Cdd:TIGR02917 207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN-----SPLAHYLKALvdfqkKNYEDAR 281

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1496288061 246 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDA 295
Cdd:TIGR02917 282 ETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 5-363 2.29e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 93.61  E-value: 2.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   5 LLQACYLKAIET--------RPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVA 76
Cdd:TIGR02917 101 LLQGKFQQVLDElpgktlldDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  77 AYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 156
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 157 -----------------ADSLNNLANIKR-----------------EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 202
Cdd:TIGR02917 261 plahylkalvdfqkknyEDARETLQDALKsapeylpalllagaseyQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQL 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 203 QQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSY 282
Cdd:TIGR02917 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL 420

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 283 RTALKLKPDFPDAYCNLA-HCLQivcdwtdyEARMKKLVSIVAEQLDK---NrlPSVHPHHSMLYPLTHDYRKAIAARHA 358
Cdd:TIGR02917 421 ETAAQLDPELGRADLLLIlSYLR--------SGQFDKALAAAKKLEKKqpdN--ASLHNLLGAIYLGKGDLAKAREAFEK 490


                  ....*
gi 1496288061 359 NLCLE 363
Cdd:TIGR02917 491 ALSIE 495
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 141-268 2.34e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 84.67  E-value: 2.34e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 141 DAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRI 220
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1496288061 221 QPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASI 268
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
4-185 3.10e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 87.28  E-value: 3.10e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   4 CLLQACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALN 83
Cdd:COG4785    56 AALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALE 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  84 LSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGqvvdaeecYNTALRLCPSHADSLNNL 163
Cdd:COG4785   136 LDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD--------PEKALALLLEDWATAYLL 207

                         170       180
                  ....*....|....*....|..
gi 1496288061 164 anikreQGYIEEATRLYLKALE 185
Cdd:COG4785   208 ------QGDTEEARELFKLALA 223
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
98-189 1.24e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 81.37  E-value: 1.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  98 VYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEEcYNTALRLCPSHADSLNNLANIKREQGYIEEAT 177
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1496288061 178 RLYLKALEVFPE 189
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 47-188 1.28e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 83.47  E-value: 1.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  47 AVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAY 126
Cdd:COG5010    12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288061 127 CNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFP 188
Cdd:COG5010    92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 6-126 4.32e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 81.21  E-value: 4.32e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   6 LQACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLS 85
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1496288061  86 PNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAY 126
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 174-290 1.25e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 80.77  E-value: 1.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 174 EEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQ 253
Cdd:COG5010    37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1496288061 254 INPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKP 290
Cdd:COG5010   117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
166-257 2.93e-17

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 77.52  E-value: 2.93e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 166 IKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMhYKEAIRIQPTFADAYSNMGNTLKEMQDVAGAL 245
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1496288061 246 QCYTRAIQINPA 257
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 71-222 4.43e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 79.23  E-value: 4.43e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  71 FDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTAL 150
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288061 151 RLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQP 222
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 5-120 5.69e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 78.85  E-value: 5.69e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   5 LLQACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNL 84
Cdd:COG5010    38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1496288061  85 SPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQP 120
Cdd:COG5010   118 SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
30-121 1.34e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 75.59  E-value: 1.34e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  30 VFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAaYLRALNLSPNNAVVHGNLACVYYEQGLIDLAV 109
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1496288061 110 DTYRRAIELQPN 121
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 5-154 1.37e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 77.69  E-value: 1.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   5 LLQACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNL 84
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  85 SPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCP 154
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 107-256 1.98e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 77.31  E-value: 1.98e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 107 LAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEV 186
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 187 FPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINP 256
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 209-300 3.32e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 75.81  E-value: 3.32e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 209 EALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKL 288
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90
                  ....*....|..
gi 1496288061 289 KPDFPDAYCNLA 300
Cdd:COG4235    81 DPDNPEALYLLG 92
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 96-300 5.93e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 82.44  E-value: 5.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  96 ACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQG---- 171
Cdd:TIGR02917  29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGkfqq 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 172 YIEEATRLYLKALEvfpEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRA 251
Cdd:TIGR02917 109 VLDELPGKTLLDDE---GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1496288061 252 IQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLA 300
Cdd:TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA 234
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 44-342 4.19e-15

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 78.32  E-value: 4.19e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  44 FEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFP 123
Cdd:NF033758   75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPDDA 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 124 DAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQ 203
Cdd:NF033758  155 SSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTALKVMMRSYLDRKQLAMAKLVALRAVKIDQNDPELHHTVGLILLQ 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 204 QGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYR 283
Cdd:NF033758  235 EGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLRRILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYD 314

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288061 284 TALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKlvSIVAEQLDKNRLPSVHPHHSML 342
Cdd:NF033758  315 EAEKLDPELAAIYLNRAIILHRVKDAPERAVELYK--KYIAMAGGEVALNAEAPVFGLL 371
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 169-301 2.87e-14

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 73.14  E-value: 2.87e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 169 EQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCY 248
Cdd:TIGR02521  43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061 249 TRAIQIN--PAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAH 301
Cdd:TIGR02521 123 EQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 178-303 1.05e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.60  E-value: 1.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 178 RLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPA 257
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1496288061 258 FADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 303
Cdd:COG5010    87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
237-328 2.77e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.35  E-value: 2.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 237 EMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQsYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM 316
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82

                          90
                  ....*....|..
gi 1496288061 317 KKLVSIVAEQLD 328
Cdd:COG3063    83 ERALELDPSALR 94
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 40-180 3.33e-13

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 70.06  E-value: 3.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIElQ 119
Cdd:TIGR02521  50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-D 128

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288061 120 PNFP---DAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLY 180
Cdd:TIGR02521 129 PLYPqpaRSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 44-303 8.41e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.94  E-value: 8.41e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  44 FEKAVALDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALN---LSPNNAVVH---GNLACVY--YEQGLIDLavdty 112
Cdd:TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKAdesYEEAARAFEKALDlgkLGEKEAIALnlrGTFKCLKgkHLEALADL----- 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 113 RRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAA 192
Cdd:TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 193 AHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDS 272
Cdd:TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1496288061 273 -------GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 303
Cdd:TIGR00990 515 lalfqwkQDFIEAENLCEKALIIDPECDIAVATMAQLL 552
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
214-303 1.55e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 1.55e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 214 YKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFP 293
Cdd:COG4785    62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA 141

                          90
                  ....*....|
gi 1496288061 294 DAYCNLAHCL 303
Cdd:COG4785   142 YAYLNRGIAL 151
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 99-315 1.01e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 66.88  E-value: 1.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  99 YYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH-ADSLNNLANIkrEQGyiEEAT 177
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 178 RLYLKALEVfpefaaahsnLASVLQQQGKLTEALMHYKEAIRIQPtfADAYSNMGntlkE--MQD---VAGA----LQCY 248
Cdd:cd24142    86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELKRKL--SSALCALA----EiyMTDlcdEPDAeqrcEELI 149

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288061 249 TRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYEAR 315
Cdd:cd24142   150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
8-87 1.13e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 61.72  E-value: 1.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   8 ACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIhHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPN 87
Cdd:COG3063    13 EYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 123-222 2.33e-11

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 64.88  E-value: 2.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 123 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQ 202
Cdd:NF033920  156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                          90       100
                  ....*....|....*....|
gi 1496288061 203 QQGKLTEALMHYKEAIRIQP 222
Cdd:NF033920  236 AQGCTAQARAAAECALALAP 255
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 40-294 2.73e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 67.32  E-value: 2.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 119
Cdd:TIGR00990 350 ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 120 PNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLAS 199
Cdd:TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 200 VLQQQGKLTEALMHYKE-------AIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAiqinpafadahsnlASIHKDS 272
Cdd:TIGR00990 510 LINKALALFQWKQDFIEaenlcekALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA--------------AELARTE 575

                         250       260
                  ....*....|....*....|....*
gi 1496288061 273 GNIPEAI---QSYRTALKLKPDFPD 294
Cdd:TIGR00990 576 GELVQAIsyaEATRTQIQVQEDYPV 600
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-119 6.31e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.90  E-value: 6.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   7 QACYLKAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSP 86
Cdd:COG2956   164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1496288061  87 NNAVVHgNLACVYYEQGLIDLAVDTYRRAIELQ 119
Cdd:COG2956   244 SDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
TPR_11 pfam13414
TPR repeat;
98-137 4.57e-09

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 52.47  E-value: 4.57e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1496288061  98 VYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKG 137
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_12 pfam13424
Tetratricopeptide repeat;
157-220 9.98e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.77  E-value: 9.98e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288061 157 ADSLNNLANIKREQGYIEEATRLYLKALEVF--------PEFAAAHSNLASVLQQQGKLTEALMHYKEAIRI 220
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 244-303 1.13e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 1.13e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 244 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 303
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL 61
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 71-157 2.14e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 53.07  E-value: 2.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  71 FDRAVAAYLRALNLSPNNAV---VHGNLACVYYEQGLIDLAVDTYRRAIELQPN---FPDAYCNLANALKEKGQVVDAEE 144
Cdd:COG1729     9 YDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARA 88

                          90
                  ....*....|...
gi 1496288061 145 CYNTALRLCPSHA 157
Cdd:COG1729    89 TLEELIKKYPDSE 101
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 33-187 2.67e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 56.48  E-value: 2.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  33 AQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVV--------HGNLACV-YYEQG 103
Cdd:cd24142    12 DQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkylylgqlSGGEEALqYYEKG 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 104 ----------LIDLAVDTYRRAIELQPNFPDAYCNLA-----------NALKEkgqvvdAEECYNTALRLCPSHADSLNN 162
Cdd:cd24142    92 ieileeelqaLQAASAEAEEEAEELKRKLSSALCALAeiymtdlcdepDAEQR------CEELITKALELDPTNPEALQT 165

                         170       180
                  ....*....|....*....|....*
gi 1496288061 163 LANIKREQGYIEEATRLYLKALEVF 187
Cdd:cd24142   166 LASLRISQQRPDEAKEALRRSLELW 190
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 99-193 5.43e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.92  E-value: 5.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  99 YYEQGLIDLAVDTYRRAIELQPN---FPDAYCNLANALKEKGQVVDAEECYNTALRLCPSH---ADSLNNLANIKREQGY 172
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82

                          90       100
                  ....*....|....*....|.
gi 1496288061 173 IEEATRLYLKALEVFPEFAAA 193
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAA 103
TPR_12 pfam13424
Tetratricopeptide repeat;
189-257 5.98e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.46  E-value: 5.98e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061 189 EFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQ--------PTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPA 257
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 44-296 1.01e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.76  E-value: 1.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  44 FEKAVALDPNFLDAYI----NLGNVLKEARIFDRAVAAYLRALNLSPNnAVVHGNLACVYYEQGLIDLAVDTYRRAIELQ 119
Cdd:TIGR00990 112 ESSVANLSEEERKKYAaklkEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 120 PNFPDAYCNLANALKEKGQVVDA-----EECYNTALR---LCPSHADSLNNLANIKREQGYIEEATRL--------YLKA 183
Cdd:TIGR00990 191 PDYSKALNRRANAYDGLGKYADAlldltASCIIDGFRneqSAQAVERLLKKFAESKAKEILETKPENLpsvtfvgnYLQS 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 184 LEVFPEFAA------AHSNLASVLQQQGK----------LTEALMHYKEAI---RIQPTFADAYSNMGNTLKEMQDVAGA 244
Cdd:TIGR00990 271 FRPKPRPAGledsneLDEETGNGQLQLGLkspeskadesYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEA 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1496288061 245 LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAY 296
Cdd:TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY 402
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 158-300 1.13e-07

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 54.56  E-value: 1.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 158 DSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPT-FADAYSNMGntlk 236
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLG---- 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288061 237 emQDVAG--ALQCYTRAIQInpafadAHSNLASIHKDSGNIPEAIQsyrtalKLKPDFPDAYCNLA 300
Cdd:cd24142    77 --QLSGGeeALQYYEKGIEI------LEEELQALQAASAEAEEEAE------ELKRKLSSALCALA 128
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 71-211 1.50e-07

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 54.24  E-value: 1.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  71 FDRAVAAYLRALNLSPNN-----AVVHGNLACVYYEQGLIDLAVDTYRRAIEL--QPNFPD----AYCNLANALKEKGQV 139
Cdd:pfam17874  17 AERALELAEQALALLPEDdllarGLATFVLGEAYLCLGDLDAALQAMREAEALarRADSPHvtlwALLQQGEILRAQGRL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 140 VDAEECYNTALRLC--------PSHADSLNNLANIKREQGYIEEATRLYLKALEV---FPEFAAAHSN--LASVLQQQGK 206
Cdd:pfam17874  97 HQALETYQQALQLArdhglqhlPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqWEPDAAVDAYvlLARIALAQGE 176


                  ....*
gi 1496288061 207 LTEAL 211
Cdd:pfam17874 177 LEEAL 181
TPR_11 pfam13414
TPR repeat;
268-301 3.57e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.08  E-value: 3.57e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061 268 IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAH 301
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
TPR_11 pfam13414
TPR repeat;
203-239 4.02e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.08  E-value: 4.02e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1496288061 203 QQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQ 239
Cdd:pfam13414   6 EQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 38-292 4.94e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 53.93  E-value: 4.94e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   38 WLAIH----------------HFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSP-NNAVVHGnLACVYY 100
Cdd:PRK11447   352 WLLIQqgdaalkannlaqaerLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTNAVRG-LANLYR 430

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  101 EQG-------LIDL------AVDTYRRAIELqpnfpDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIK 167
Cdd:PRK11447   431 QQSpekalafIASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  168 REQGYIEEATRLYLKALEVFP-------------------EFAAAHSN-------------------------LASVLQQ 203
Cdd:PRK11447   506 RQAGQRSQADALMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsdqvleTANRLRD 585

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  204 QGKLTEA--LMHYKEA-IRIQPTFADAYSNMGntlkemqDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAiq 280
Cdd:PRK11447   586 SGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA-- 656

                          330
                   ....*....|..
gi 1496288061  281 syRTALKLKPDF 292
Cdd:PRK11447   657 --RAQLAKLPAT 666
TPR_12 pfam13424
Tetratricopeptide repeat;
125-189 1.37e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 1.37e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288061 125 AYCNLANALKEKGQVVDAEECYNTALRLC--------PSHADSLNNLANIKREQGYIEEATRLYLKALEVFPE 189
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 132-219 1.50e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 132 ALKEKGQVVDAEECYNTALRLCPSH---ADSLNNLANIKREQGYIEEATRLYLKALEVFPE---FAAAHSNLASVLQQQG 205
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                          90
                  ....*....|....
gi 1496288061 206 KLTEALMHYKEAIR 219
Cdd:COG1729    82 DYDKARATLEELIK 95
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 96-188 2.38e-06

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 49.86  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  96 ACVYYEQ-GLIDLAVDTYRRAIELQPNFPDAYCNLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGYIE 174
Cdd:NF033920  162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                          90
                  ....*....|....
gi 1496288061 175 EATRLYLKALEVFP 188
Cdd:NF033920  242 QARAAAECALALAP 255
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 203-295 2.53e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.91  E-value: 2.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 203 QQGKLTEALMHYKEAIRIQPT---FADAYSNMGNTLKEMQDVAGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIP 276
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84

                          90
                  ....*....|....*....
gi 1496288061 277 EAIQSYRTALKLKPDFPDA 295
Cdd:COG1729    85 KARATLEELIKKYPDSEAA 103
Ycf37 COG5714
Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; ...
 11-90 4.40e-06

Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf37, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444424 [Multi-domain]  Cd Length: 176  Bit Score: 48.01  E-value: 4.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  11 LKAIETRPD--FAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNN 88
Cdd:COG5714    79 LKAAEEEEPenLALIYNALGFAYFAQEQYDLAIRQYKEALKLKPDYVTALNNLGHAYEKKKLTAQALETYEEALKLDPNN 158


                  ..
gi 1496288061  89 AV 90
Cdd:COG5714   159 KT 160
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 40-256 4.42e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 50.47  E-value: 4.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNN-----------------AVVHGNLAcvyYEQ 102
Cdd:PRK11447   288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSsnrdkwesllkvnrywlLIQQGDAA---LKA 364

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  103 GLIDLAVDTYRRAIELQPNfpDAYC--NLANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQGyieeatrly 180
Cdd:PRK11447   365 NNLAQAERLYQQARQVDNT--DSYAvlGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS--------- 433

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288061  181 lkalevfPEFAAAHSNLASVLQQQ--GKLTEALMHykeairiqptfaDAYSNMGNTLKEMQDVAGALQCYTRAIQINP 256
Cdd:PRK11447   434 -------PEKALAFIASLSASQRRsiDDIERSLQN------------DRLAQQAEALENQGKWAQAAELQRQRLALDP 492
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 10-111 4.72e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.47  E-value: 4.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  10 YLKAIETRPDFAVAWSNLGCVFnAQSEIWLAIHHFEKAVAL---DPNFLDAYinlGNVLKEARIFDRAVAAYLRALNLSP 86
Cdd:TIGR02917 793 YQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAP 868

                          90       100
                  ....*....|....*....|....*
gi 1496288061  87 NNAVVHGNLACVYYEQGLIDLAVDT 111
Cdd:TIGR02917 869 EAAAIRYHLALALLATGRKAEARKE 893
TPR_17 pfam13431
Tetratricopeptide repeat;
111-144 4.99e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 43.69  E-value: 4.99e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061 111 TYRRAIELQPNFPDAYCNLANALKEKGQVVDAEE 144
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_11 pfam13414
TPR repeat;
232-273 6.91e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 43.61  E-value: 6.91e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1496288061 232 GNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSG 273
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 169-253 6.95e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.75  E-value: 6.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 169 EQGYIEEATRLYLKALEVFP--EFAA-AHSNLASVLQQQGKLTEALMHYKEAIRIQPT---FADAYSNMGNTLKEMQDVA 242
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPnsPLAPdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84

                          90
                  ....*....|.
gi 1496288061 243 GALQCYTRAIQ 253
Cdd:COG1729    85 KARATLEELIK 95
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 40-125 7.96e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.75  E-value: 7.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVV---HGNLACVYYEQGLIDLAVDTYR 113
Cdd:COG1729    12 AIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKARATLE 91

                          90
                  ....*....|..
gi 1496288061 114 RAIELQPNFPDA 125
Cdd:COG1729    92 ELIKKYPDSEAA 103
TPR_1 pfam00515
Tetratricopeptide repeat;
123-156 8.37e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.18  E-value: 8.37e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061 123 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 156
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
225-256 1.09e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.79  E-value: 1.09e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1496288061 225 ADAYSNMGNTLKEMQDVAGALQCYTRAIQINP 256
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR_11 pfam13414
TPR repeat;
62-103 1.67e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 42.46  E-value: 1.67e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1496288061  62 GNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQG 103
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 123-156 2.28e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 2.28e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288061  123 PDAYCNLANALKEKGQVVDAEECYNTALRLCPSH 156
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
89-122 2.66e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.64  E-value: 2.66e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061  89 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF 122
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
10-180 2.95e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 46.41  E-value: 2.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  10 YLKAIETRPDFAVAWSNLGCVFNAQSEIWLAihhfEKAVALDPNFlDAYINLGNVLKEARIFDRAVAAYLRALN-LSPNN 88
Cdd:COG4700    49 VLPELRNSRDARRVQRAARNALDPGRELREL----EKALEFADTV-QNRVRLADALLELGRYDEAIELYEEALTgIFADD 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  89 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF--PDAYCNLANALKEKGQVVDAEECYNTALRlCPSHADSLNNLANI 166
Cdd:COG4700   124 PHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLEAAEAELEALAR-RYSGPEARYRYAKF 202

                         170
                  ....*....|....
gi 1496288061 167 KREQGYIEEATRLY 180
Cdd:COG4700   203 LARQGRTAEAKELL 216
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 80-154 3.19e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.83  E-value: 3.19e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061  80 RALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNfPDAYCNLANALKEKGQVVDAEECYNTALRLCP 154
Cdd:COG3071   249 KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 89-122 3.28e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.66  E-value: 3.28e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288061   89 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF 122
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
57-118 3.43e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 3.43e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  57 AYINLGNVLKEARIFDRAVAAYLRALNL--------SPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIEL 118
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_1 pfam00515
Tetratricopeptide repeat;
191-224 3.68e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.25  E-value: 3.68e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061 191 AAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTF 224
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
259-292 3.68e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.25  E-value: 3.68e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061 259 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDF 292
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
164-205 3.71e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 3.71e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1496288061 164 ANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVLQQQG 205
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 191-224 5.10e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 5.10e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288061  191 AAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTF 224
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 259-292 5.74e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 5.74e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288061  259 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDF 292
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 225-258 6.33e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 6.33e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288061  225 ADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAF 258
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
21-54 8.56e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 8.56e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061  21 AVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNF 54
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 94-220 1.29e-04

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 45.03  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  94 NLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLA-----NALKEKGQVvdaeecynTALRLCPSHADSLNNLANIKR 168
Cdd:cd24145   152 ELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHslvlmNNEAAELAL--------HALRKPLSSTLIEASRLPQKS 223

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061 169 EQGYIEEATRLYLKALEVF---------PE----FAAAHSNLASVLQQQGKLTEALMHYKEAIRI 220
Cdd:cd24145   224 RDQLLEAALKWAQKALDVAksikpkdrdPEcdqaCALALYNLGVIAEMLGNLDEARKLYKEAISL 288
TPR_12 pfam13424
Tetratricopeptide repeat;
89-155 1.40e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 1.40e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061  89 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQ-----PNFPD---AYCNLANALKEKGQVVDAEECYNTALRLCPS 155
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHPLtatTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
42-261 1.51e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 45.62  E-value: 1.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061   42 HHFEKAVALDPnFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNN------AVVHGNLACVYYEQGLIDLAVDTYRRA 115
Cdd:COG3899    693 HHLNRAGERDR-AARLLLRAARRALARGAYAEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERA 771

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  116 IELQ-------------PNFPDAYCNLANALkeKGQVVDAEECYNTALRLCPSH------ADSLNNLANIKREQGYIEEA 176
Cdd:COG3899    772 LAARalaalaalrhgnpPASARAYANLGLLL--LGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREA 849

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  177 TRLYLKALEVFPEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINP 256
Cdd:COG3899    850 LELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAA 929


                   ....*
gi 1496288061  257 AFADA 261
Cdd:COG3899    930 ALALA 934
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 12-125 1.61e-04

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 44.25  E-value: 1.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  12 KAIETRPDFAVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPN----------FL-------------------------- 55
Cdd:TIGR02521  56 KALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNngdvlnnygtFLcqqgkyeqamqqfeqaiedplypqpa 135

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  56 DAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDA 125
Cdd:TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 74-154 1.61e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 43.12  E-value: 1.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  74 AVAAYLRALNL--SPNN-AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAYCNLA-------NALKEKGQVVDAE 143
Cdd:PRK02603   54 ALENYEEALKLeeDPNDrSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAviyhkrgEKAEEAGDQDEAE 133

                          90
                  ....*....|....*...
gi 1496288061 144 ECYNT-------ALRLCP 154
Cdd:PRK02603  134 ALFDKaaeywkqAIRLAP 151
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 52-120 1.82e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 44.08  E-value: 1.82e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288061  52 PNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQP 120
Cdd:NF033920  187 PDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 51-211 2.02e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.29  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  51 DPNFLDAYINLGNVLKEARIFDRAVA------AYLRALNLSPNNAVVHG---NLACVYYEQGLID----LAVDTYRRAIE 117
Cdd:NF040586  558 HPRTLLSANNLARDLRELGRYAEALDlleealERYREVLGGPDHPDTLRaakSLAVALRRAGRLEealeLAEDTYERYRR 637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 118 LQ-PNFPD---AYCNLANALKEKGQVVDA----EECYNT-ALRLCPSHADSL---NNLANIKREQGYIEEATRLYLKALE 185
Cdd:NF040586  638 RFgPDHPDtlaAALSLANDLRALGDADEArelaREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAALE 717

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1496288061 186 VFPE----------FAAAhsNLASVLQQQGKLTEAL 211
Cdd:NF040586  718 GLRErlgpdhpytlAAAV--NLANDLAALGDLDAAL 751
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 94-157 2.76e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.01  E-value: 2.76e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061  94 NLACVYYEQGLIDLAVDTYRRAIELQPNFPD---AYCNLANALKEKGQVVDAEECYNTALRLCPSHA 157
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 21-54 3.23e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 3.23e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1496288061   21 AVAWSNLGCVFNAQSEIWLAIHHFEKAVALDPNF 54
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 198-356 3.88e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 3.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 198 ASVLQQQGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASI--------- 268
Cdd:TIGR02917  29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAyllqgkfqq 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 269 --------------------------HKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAhclQIVCDWTDYEARMKklvsI 322
Cdd:TIGR02917 109 vldelpgktllddegaaellalrglaYLGLGQLELAQKSYEQALAIDPRSLYAKLGLA---QLALAENRFDEARA----L 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1496288061 323 VAEQLDKNrlPSVHPHHSMLYPL----------THDYRKAIAAR 356
Cdd:TIGR02917 182 IDEVLTAD--PGNVDALLLKGDLllslgnielaLAAYRKAIALR 223
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
268-355 4.54e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 4.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 268 IHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLqivCDWTDYEA--RMKKlvsivAEQLDKNRlPSVHPHHSMLYPL 345
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL---LEQGRYDEaiALEK-----ALKLDPNN-AEALLNLAELLLE 71

                          90
                  ....*....|
gi 1496288061 346 THDYRKAIAA 355
Cdd:COG3063    72 LGDYDEALAY 81
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 123-154 4.92e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.27  E-value: 4.92e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1496288061 123 PDAYCNLANALKEKGQVVDAEECYNTALRLCP 154
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 67-338 5.71e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 43.75  E-value: 5.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  67 EARIFDRAVAAYLRALnLSPNNA---VVHGNLACVY-----YEQGLiDLAVDTYRRAIELQ-PNFPD---AYCNLANALK 134
Cdd:NF040586  496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLgPDHPRtllSANNLARDLR 573

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 135 EKGQVVDA----EECYNTALRLC--PSHADSLN---NLANIKREQGYIEEA----TRLYLKALEVF----PEFAAAHSNL 197
Cdd:NF040586  574 ELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEAlelaEDTYERYRRRFgpdhPDTLAAALSL 653

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 198 ASVLQQQGKLTEALMHYKEAIRIQP---------TFAdAYSNMGNTLKEMQDVAGALQCYTRAI-QINPAFADAH----- 262
Cdd:NF040586  654 ANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpytla 732

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 263 --SNLASIHKDSGNIPEAIQS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYEARMKKLVSIVAEQLD 328
Cdd:NF040586  733 aaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLARLR 808

                         330
                  ....*....|
gi 1496288061 329 KnRLPSVHPH 338
Cdd:NF040586  809 R-VLGPDHPD 817
TPR_11 pfam13414
TPR repeat;
130-171 6.17e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 6.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1496288061 130 ANALKEKGQVVDAEECYNTALRLCPSHADSLNNLANIKREQG 171
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 162-222 6.88e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.86  E-value: 6.88e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288061 162 NLANIKREQGYIEEATRLYLKALEVF---PEFAAAHSNLASVLQQQGKLTEALMHYKEAIRIQP 222
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 259-291 7.14e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 7.14e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1496288061 259 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPD 291
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 40-137 7.89e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.20  E-value: 7.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  40 AIHHFEKAVALDPNFLD-AYI--NLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQG------------- 103
Cdd:PRK02603   54 ALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGekaeeagdqdeae 133

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1496288061 104 -LIDLAVDTYRRAIELQPNfpdAYCNLANALKEKG 137
Cdd:PRK02603  134 aLFDKAAEYWKQAIRLAPN---NYIEAQNWLKTTG 165
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 239-293 8.04e-04

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 43.36  E-value: 8.04e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061 239 QDVAGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFP 293
Cdd:PRK09782  590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 225-256 1.17e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.17e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1496288061 225 ADAYSNMGNTLKEMQDVAGALQCYTRAIQINP 256
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 71-207 1.42e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 41.91  E-value: 1.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  71 FDRAVAAYLRALNL-----SPNNAVVH-GNLACVYYEQGLIDLAVDTYRRAIELQP-----NFP---DAYCNLANALKEK 136
Cdd:pfam17874  56 LDAALQAMREAEALarradSPHVTLWAlLQQGEILRAQGRLHQALETYQQALQLARdhglqHLPlhgFLLVGLADLLYEW 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 137 GQVVDAEECYNTALRLC---PSHA--DSLNNLANIKREQGYIEEATRLYLKALEV---FPEFAAAHSNLASV----LQQQ 204
Cdd:pfam17874 136 NDLEEAEQHAQQGIQLGrqwEPDAavDAYVLLARIALAQGELEEALTLLRRAELLarqSFFHVDWLANAERVrvrlWLAR 215


                  ...
gi 1496288061 205 GKL 207
Cdd:pfam17874 216 GDL 218
TPR_1 pfam00515
Tetratricopeptide repeat;
56-88 1.42e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.42e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1496288061  56 DAYINLGNVLKEARIFDRAVAAYLRALNLSPNN 88
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_19 pfam14559
Tetratricopeptide repeat;
204-268 1.44e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.44e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061 204 QGKLTEALMHYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASI 268
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_17 pfam13431
Tetratricopeptide repeat;
213-246 1.49e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 36.75  E-value: 1.49e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061 213 HYKEAIRIQPTFADAYSNMGNTLKEMQDVAGALQ 246
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_17 pfam13431
Tetratricopeptide repeat;
179-211 1.53e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 36.75  E-value: 1.53e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1496288061 179 LYLKALEVFPEFAAAHSNLASVLQQQGKLTEAL 211
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 56-88 1.61e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 1.61e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1496288061   56 DAYINLGNVLKEARIFDRAVAAYLRALNLSPNN 88
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 71-194 1.98e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 41.33  E-value: 1.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  71 FDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNF-PDAYCNLANALKEKGQVVDAEECYNTA 149
Cdd:PRK11788  196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYlSEVLPKLMECYQALGDEAEGLEFLRRA 275

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1496288061 150 LRLCPShADSLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAH 194
Cdd:PRK11788  276 LEEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319
TPR_19 pfam14559
Tetratricopeptide repeat;
240-296 2.07e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.07e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061 240 DVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAY 296
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
TPR_10 pfam13374
Tetratricopeptide repeat;
157-186 2.09e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.71  E-value: 2.09e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1496288061 157 ADSLNNLANIKREQGYIEEATRLYLKALEV 186
Cdd:pfam13374   2 ASSLNNLANALRAQGRYDEAEELLEEALAI 31
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
128-253 2.10e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.64  E-value: 2.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 128 NLANALKEKGQVVDAEECYNTALRLcpSHADS---LNNLANIKREQGYIEEATRLYLKALEVFPEF--AAAHSNLASVLQ 202
Cdd:COG4700    94 RLADALLELGRYDEAIELYEEALTG--IFADDphiLLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALE 171

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288061 203 QQGKLTEALMHYKEAIRIQPTF------ADAYSNMGNT------LKEMQDVAGALQCYTRAIQ 253
Cdd:COG4700   172 ALGDLEAAEAELEALARRYSGPearyryAKFLARQGRTaeakelLEEILDEAKHMPKHYRRLN 234
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 60-121 2.35e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.32  E-value: 2.35e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061  60 NLGNVLKEARIFDRAVAAYLRAL---NLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPN 121
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
TPR_19 pfam14559
Tetratricopeptide repeat;
40-96 2.62e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.62e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061  40 AIHHFEKAVALDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLA 96
Cdd:pfam14559   7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 230-291 3.19e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.93  E-value: 3.19e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288061 230 NMGNTLKEMQDVAGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPD 291
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 137-236 3.50e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 39.27  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 137 GQVVDAEECYNTALRLCPSHAD---SLNNLANIKREQGYIEEATRLYLKALEVFPEFAAAHSNLASVL-------QQQGK 206
Cdd:PRK02603   49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYhkrgekaEEAGD 128

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1496288061 207 LTEALMHY-------KEAIRIQPtfaDAYSNMGNTLK 236
Cdd:PRK02603  129 QDEAEALFdkaaeywKQAIRLAP---NNYIEAQNWLK 162
TPR_17 pfam13431
Tetratricopeptide repeat;
247-280 4.34e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.60  E-value: 4.34e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1496288061 247 CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQ 280
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
COG3899 COG3899
Predicted ATPase [General function prediction only];
174-295 4.68e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 40.61  E-value: 4.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061  174 EEATRLYLKALEVFPEF------AAAHSNLASVLQQQGKLTEALMHYKEAIRIQ-------------PTFADAYSNMGNT 234
Cdd:COG3899    722 AEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERALAARalaalaalrhgnpPASARAYANLGLL 801

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288061  235 LkeMQDVAGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDA 295
Cdd:COG3899    802 L--LGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDA 866
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 237-304 5.36e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.66  E-value: 5.36e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288061 237 EMQDVAGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIPEAIQSYRTALKLKPD---FPDAYCNLAHCLQ 304
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYL 78
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 197-278 5.41e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 39.99  E-value: 5.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288061 197 LASVLQQQGKLTEALMHYKEAIR--------IQPTFADAYSNMGNTLKEMQDVAGALQCYTRAIQI-----NPAFADAHS 263
Cdd:pfam17874  86 QGEILRAQGRLHQALETYQQALQlardhglqHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqwePDAAVDAYV 165

                          90
                  ....*....|....*
gi 1496288061 264 NLASIHKDSGNIPEA 278
Cdd:pfam17874 166 LLARIALAQGELEEA 180
TPR_19 pfam14559
Tetratricopeptide repeat;
71-126 7.02e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 7.02e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288061  71 FDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAVDTYRRAIELQPNFPDAY 126
Cdd:pfam14559   4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
TPR_17 pfam13431
Tetratricopeptide repeat;
77-109 7.32e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.83  E-value: 7.32e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1496288061  77 AYLRALNLSPNNAVVHGNLACVYYEQGLIDLAV 109
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 225-285 7.72e-03

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 39.10  E-value: 7.72e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288061 225 ADAYSNMGNTLKEMqDVAGALQCYTRAIQI-------NPAfADAHSNLASIH-KDSGNIPEAIQSYRTA 285
Cdd:cd15832    72 ANAYVEAAKCYKKV-DPQEAVNCLEKAIEIytemgrfRQA-AKHLKEIAELYeNELGDLDKAIEAYEQA 138
TPR_7 pfam13176
Tetratricopeptide repeat;
261-296 7.96e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 34.82  E-value: 7.96e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1496288061 261 AHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAY 296
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 89-121 8.28e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 8.28e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1496288061  89 AVVHGNLACVYYEQGLIDLAVDTYRRAIELQPN 121
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 56-87 8.52e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 8.52e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1496288061  56 DAYINLGNVLKEARIFDRAVAAYLRALNLSPN 87
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_8 pfam13181
Tetratricopeptide repeat;
259-291 9.68e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.29  E-value: 9.68e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1496288061 259 ADAHSNLASIHKDSGNIPEAIQSYRTALKLKPD 291
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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