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Conserved domains on  [gi|1799935035|ref|XP_031948786|]
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MAM and LDL-receptor class A domain-containing protein 1 [Corvus moneduloides]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
816-971 7.76e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 168.71  E-value: 7.76e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  816 CNFENGLCNWEQDVEDDFDWIRIQGPTPTVNTGPlkDHTTGTARGHYLYLESSePRQFQDKAVLLSPLFNPSGNGTCvFR 895
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESS-SGREGQKARLLSPLLPPPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1799935035  896 FHYHMFGKEVYKLSVFQRTVNNTKGWLLWYKFGNQENRWIRQTLFISS-SKPFQILMKGTVGDGFTGDIGLDDVSFL 971
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLS 153
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1263-1418 8.10e-46

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 162.93  E-value: 8.10e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1263 CNFEFELCGWKQDEDDDFDWHLRTSSTTKLGTGPatDHTLQEPSGHYIFIKSSFFQlPGQKARISSPVLSR-RNKNCkII 1341
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPpRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799935035 1342 FYYHMYGADIGSLIIYQRTTL-KHEKILLNLTGNQGNFWQRKALTLSGDgDEDFQVVFEGIAGKGPKDGIALDDLTFS 1418
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGgGLGTLLWSASGGQGNQWQEAEVTLSAS-SKPFQVVFEGVRGSGSRGDIALDDISLS 153
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1041-1207 1.26e-36

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 136.35  E-value: 1.26e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1041 CDFEDkGLCGWHQPAleqmsrnysihiTNTFKWQLGRGAnlypeQEQHCPLTDHTTCTEEGWYIFADSSNGEFGHTADIA 1120
Cdd:cd06263      1 CDFED-GLCGWTQDS------------TDDFDWTRVSGS-----TPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLL 62
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1121 TPVISLT-GPRCkIIFWNHMNGSTVGSLEVLCKSSN--KTSKLWTQSGSQGPQWNRAEVFLGIRSN-FQVIFRAKRGVSY 1196
Cdd:cd06263     63 SPLLPPPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGS 141
                          170
                   ....*....|.
gi 1799935035 1197 MGDVAVDDITF 1207
Cdd:cd06263    142 RGDIALDDISL 152
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
605-766 1.40e-36

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


:

Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 136.34  E-value: 1.40e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  605 CDFERES-CGWIETvNADEFDWVRSSSSAlppafQKQAPPWDHTYNKPEGHFMFILKNSSSISQIARLRSPKFRQTGSNC 683
Cdd:pfam00629    1 CDFEDGNlCGWTQD-SSDDFDWERVSGPS-----VKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  684 TLSFWYYNYGQSVGAAELQLIVDGLKQPTVLWRTYYNEGNQWLKAVIQLGRLPHPFQFSLDKISLGFYEGVSAIDDIRF- 762
Cdd:pfam00629   75 CLRFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGGSRGGIALDDISLs 154

                   ....*
gi 1799935035  763 -ENCA 766
Cdd:pfam00629  155 sGPCP 159
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1686-1845 6.69e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 128.65  E-value: 6.69e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1686 CNFEIQDqewttvCGLIQDTTDDFDWSISNSAAQTS-PHTDHTPGKGQ-SFLYVNSSAQKEGDSARITTSKFFPASLGVC 1763
Cdd:cd06263      1 CDFEDGL------CGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSgHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1764 rVRFWFWMFaSRQTGVLKVYTVEE-HGMDILMWSSSRNEENKWMYGSVVLSSNS-PFRVAFEAEVGWSQPTEFALDDISF 1841
Cdd:cd06263     75 -LSFWYHMY-GSGVGTLNVYVREEgGGLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                   ....*
gi 1799935035 1842 TP-EC 1845
Cdd:cd06263    153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1479-1630 1.37e-31

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 122.10  E-value: 1.37e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1479 CTFENGKCGWQNSLADNFNWVLGVGSPQSLRPPGDHTLGNRTGHFLYLEATAtGLINEKAHVKSSIWKESSRTCVMSFWY 1558
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSPLLPPPRSSHCLSFWY 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799935035 1559 FKLSKAMGHIQVLIKTDDGIV--KIWSESGNHGDKWNNVKLHLGKLRN-FEIIFEGIRTRDLGGGAAIDDIEFNN 1630
Cdd:cd06263     80 HMYGSGVGTLNVYVREEGGGLgtLLWSASGGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
61-213 1.14e-21

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 93.60  E-value: 1.14e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   61 CDFETNLCKALPEFNLHPVWTRRNGQSGMGPPYSDHS-GNESAYFL--SLSSEMQSSSATLRTNVFLPTDEEHiCqIRFH 137
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHThGTGSGHYLyvESSSGREGQKARLLSPLLPPPRSSH-C-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799935035  138 YWVSQMS-GALMVGLQKHSEDTITNIWQVSGELRNQWNVNNITINST-EKYQVIFWGMVETQTKGEtVAIDDITFSEG 213
Cdd:cd06263     79 YHMYGSGvGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASsKPFQVVFEGVRGSGSRGD-IALDDISLSPG 155
MAM super family cl47572
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
425-585 1.45e-19

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


The actual alignment was detected with superfamily member pfam00629:

Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 87.80  E-value: 1.45e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  425 CDFETD-LCGWKPLSKGDADWniKKEQAPLDRKLPGRGHTNNMGHGTFIYFSGSHQMNTKTAmcHLESPfLVKLSPGLTC 503
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDW--ERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTA--RLLSP-LLPPSRSPQC 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  504 cqVRFWYWLSQDSQ--LSVFRRTALNGSLEKLRDISGLPEMNWTKVNIPVESAAEelPFQIVLQGTVLT-THAAVAIDDI 580
Cdd:pfam00629   76 --LRFWYHMSGSGVgtLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQ--PFQVVFEGIRGGgSRGGIALDDI 151

                   ....*
gi 1799935035  581 GISEE 585
Cdd:pfam00629  152 SLSSG 156
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1220-1251 4.78e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 4.78e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1799935035 1220 CTSEEFICANKYCIPKNNLCDFVNDCADNSDE 1251
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1001-1036 1.74e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 1.74e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1001 CTEKEFVCrASGHCIQMIQKCDFRPDCSDKSDESAC 1036
Cdd:cd00112      1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1641-1676 2.02e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 2.02e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1641 CPAlTDFVCGNGNCIESQFICDYKPDCEDLSDEADC 1676
Cdd:cd00112      1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
776-810 5.69e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.69e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035  776 GPNHFWCRDTKaCIDSLLVCDLVDDCGDGSDEDSC 810
Cdd:cd00112      2 PPNEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1906-1940 5.81e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.81e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035 1906 CKETEFLCPSQGCVPSLLRCDGVPDCHLSEDEVGC 1940
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
MAM super family cl47572
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
224-372 6.01e-07

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


The actual alignment was detected with superfamily member pfam00629:

Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 51.21  E-value: 6.01e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  224 SFELG-ICEWHSDLPAkPAQWAQLQaGHKIASCSFLKDWSNKTEGHFEWLEANDNALYESASLNSSMCHCSSKNCHFQFH 302
Cdd:pfam00629    2 DFEDGnLCGWTQDSSD-DFDWERVS-GPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQCLRFW 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799935035  303 YSMADSS--ALKAVLLMNQEEQ--VLWETNSMTKREWVKVNIQLPTGLENIKLMFKGTL-HSRAGFICLNSIQLL 372
Cdd:pfam00629   80 YHMSGSGvgTLRVYVRENGGTLdtLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRgGGSRGGIALDDISLS 154
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1441-1475 4.55e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 44.89  E-value: 4.55e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035 1441 CSHGHRQCQNGKCYRPEQSCDFEDNCGDNTDESKC 1475
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1858-1893 4.82e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 44.89  E-value: 4.82e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1858 CSGDKFTCAYvQQCLSLAARCNGVEECMDGSDEMNC 1893
Cdd:cd00112      1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1945-1981 2.92e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 39.88  E-value: 2.92e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1799935035 1945 CSNGSLLCAStNQCIAFSQRCDGIVDCIDSSlDESGC 1981
Cdd:cd00112      1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGS-DEENC 35
 
Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
816-971 7.76e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 168.71  E-value: 7.76e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  816 CNFENGLCNWEQDVEDDFDWIRIQGPTPTVNTGPlkDHTTGTARGHYLYLESSePRQFQDKAVLLSPLFNPSGNGTCvFR 895
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESS-SGREGQKARLLSPLLPPPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1799935035  896 FHYHMFGKEVYKLSVFQRTVNNTKGWLLWYKFGNQENRWIRQTLFISS-SKPFQILMKGTVGDGFTGDIGLDDVSFL 971
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLS 153
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1263-1418 8.10e-46

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 162.93  E-value: 8.10e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1263 CNFEFELCGWKQDEDDDFDWHLRTSSTTKLGTGPatDHTLQEPSGHYIFIKSSFFQlPGQKARISSPVLSR-RNKNCkII 1341
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPpRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799935035 1342 FYYHMYGADIGSLIIYQRTTL-KHEKILLNLTGNQGNFWQRKALTLSGDgDEDFQVVFEGIAGKGPKDGIALDDLTFS 1418
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGgGLGTLLWSASGGQGNQWQEAEVTLSAS-SKPFQVVFEGVRGSGSRGDIALDDISLS 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
816-974 9.27e-45

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 159.84  E-value: 9.27e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  816 CNFENG-LCNWEQDVEDDFDWIRIQGPTPtvNTGPLKDHTTGTARGHYLYLESSEPrQFQDKAVLLSPLFNPSGNGTCvF 894
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSV--KTGPSSDHTQGTGSGHFMYVDTSSG-APGQTARLLSPLLPPSRSPQC-L 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  895 RFHYHMFGKEVYKLSVFQRTVNNTKGWLLWYKFGNQENRWIRQTLFISS-SKPFQILMKGTVGDGFTGDIGLDDVSFLGC 973
Cdd:pfam00629   77 RFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSsTQPFQVVFEGIRGGGSRGGIALDDISLSSG 156

                   .
gi 1799935035  974 T 974
Cdd:pfam00629  157 P 157
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1263-1421 7.89e-43

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 154.44  E-value: 7.89e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1263 CNFEFE-LCGWKQDEDDDFDWHLRTSSTtkLGTGPATDHTLQEPSGHYIFIKSSFFQlPGQKARISSPVLSRRNKNCKII 1341
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPS--VKTGPSSDHTQGTGSGHFMYVDTSSGA-PGQTARLLSPLLPPSRSPQCLR 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1342 FYYHMYGADIGSLIIYQRTTLKHEKILL-NLTGNQGNFWQRKALTLSgDGDEDFQVVFEGIAGKGPKDGIALDDLTF-SR 1419
Cdd:pfam00629   78 FWYHMSGSGVGTLRVYVRENGGTLDTLLwSISGDQGPSWKEARVTLS-SSTQPFQVVFEGIRGGGSRGGIALDDISLsSG 156

                   ..
gi 1799935035 1420 EC 1421
Cdd:pfam00629  157 PC 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
811-971 8.18e-37

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 137.09  E-value: 8.18e-37
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   811 NPDLQCNFE-NGLCNWEQDVEDDFDWIRIQGPTPtvNTGPLKDHTTGTarGHYLYLESSEPRQFQdKAVLLSPLFNPSgN 889
Cdd:smart00137    1 TSPGNCDFEeGSTCGWHQDSNDDGHWERVSSATG--IPGPNRDHTTGN--GHFMFFETSSGAEGQ-TARLLSPPLYEN-R 74
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   890 GTCVFRFHYHMFGKEVYKLSVFQRTVNNTKGWLLWYKFGNQENRWIRQTLFISSS-KPFQILMKGTVGDGFTGDIGLDDV 968
Cdd:smart00137   75 STHCLTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWpQPFQVVFEGTRGKGHSGYIALDDI 154

                    ...
gi 1799935035   969 SFL 971
Cdd:smart00137  155 LLS 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1041-1207 1.26e-36

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 136.35  E-value: 1.26e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1041 CDFEDkGLCGWHQPAleqmsrnysihiTNTFKWQLGRGAnlypeQEQHCPLTDHTTCTEEGWYIFADSSNGEFGHTADIA 1120
Cdd:cd06263      1 CDFED-GLCGWTQDS------------TDDFDWTRVSGS-----TPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLL 62
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1121 TPVISLT-GPRCkIIFWNHMNGSTVGSLEVLCKSSN--KTSKLWTQSGSQGPQWNRAEVFLGIRSN-FQVIFRAKRGVSY 1196
Cdd:cd06263     63 SPLLPPPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGS 141
                          170
                   ....*....|.
gi 1799935035 1197 MGDVAVDDITF 1207
Cdd:cd06263    142 RGDIALDDISL 152
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
605-766 1.40e-36

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 136.34  E-value: 1.40e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  605 CDFERES-CGWIETvNADEFDWVRSSSSAlppafQKQAPPWDHTYNKPEGHFMFILKNSSSISQIARLRSPKFRQTGSNC 683
Cdd:pfam00629    1 CDFEDGNlCGWTQD-SSDDFDWERVSGPS-----VKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  684 TLSFWYYNYGQSVGAAELQLIVDGLKQPTVLWRTYYNEGNQWLKAVIQLGRLPHPFQFSLDKISLGFYEGVSAIDDIRF- 762
Cdd:pfam00629   75 CLRFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGGSRGGIALDDISLs 154

                   ....*
gi 1799935035  763 -ENCA 766
Cdd:pfam00629  155 sGPCP 159
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1041-1211 5.17e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 131.72  E-value: 5.17e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1041 CDFEDKGLCGWHQPaleqmsrnysihITNTFKWQLGRGANLYpeqeqHCPLTDHTTCTEEGWYIFADSSNGEFGHTADIA 1120
Cdd:pfam00629    1 CDFEDGNLCGWTQD------------SSDDFDWERVSGPSVK-----TGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLL 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1121 TPVISLTGPRCKIIFWNHMNGSTVGSLEVLCKSSNKT--SKLWTQSGSQGPQWNRAEVFLGIRSN-FQVIFRAKRGVSYM 1197
Cdd:pfam00629   64 SPLLPPSRSPQCLRFWYHMSGSGVGTLRVYVRENGGTldTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSR 143
                          170
                   ....*....|....*.
gi 1799935035 1198 GDVAVDDITF--EDCS 1211
Cdd:pfam00629  144 GGIALDDISLssGPCP 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1258-1418 2.50e-34

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 130.16  E-value: 2.50e-34
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1258 TSIGHCNFEFE-LCGWKQDEDDDFDWHlRTSSTTKlGTGPATDHTLqePSGHYIFIKSSFFQlPGQKARISSPVLSRRNK 1336
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHWE-RVSSATG-IPGPNRDHTT--GNGHFMFFETSSGA-EGQTARLLSPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1337 NCKIIFYYHMYGADIGSLIIYQRtTLKHE--KILLNLTGNQGNFWQRKALTLSGDgDEDFQVVFEGIAGKGPKDGIALDD 1414
Cdd:smart00137   76 THCLTFWYYMYGSGSGTLNVYVR-ENNGSqdTLLWSRSGTQGGQWLQAEVALSSW-PQPFQVVFEGTRGKGHSGYIALDD 153

                    ....
gi 1799935035  1415 LTFS 1418
Cdd:smart00137  154 ILLS 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1686-1845 6.69e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 128.65  E-value: 6.69e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1686 CNFEIQDqewttvCGLIQDTTDDFDWSISNSAAQTS-PHTDHTPGKGQ-SFLYVNSSAQKEGDSARITTSKFFPASLGVC 1763
Cdd:cd06263      1 CDFEDGL------CGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSgHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1764 rVRFWFWMFaSRQTGVLKVYTVEE-HGMDILMWSSSRNEENKWMYGSVVLSSNS-PFRVAFEAEVGWSQPTEFALDDISF 1841
Cdd:cd06263     75 -LSFWYHMY-GSGVGTLNVYVREEgGGLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                   ....*
gi 1799935035 1842 TP-EC 1845
Cdd:cd06263    153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
605-764 9.95e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 128.26  E-value: 9.95e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  605 CDFERESCGWIEtVNADEFDWVRSSSSALPPAfqkqaPPWDHTYNKPEGHFMFILKNSSSISQIARLRSPKFRQT-GSNC 683
Cdd:cd06263      1 CDFEDGLCGWTQ-DSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPrSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  684 tLSFWYYNYGQSVGAAELQLIVDGLKQPTVLWRTYYNEGNQWLKAVIQLGRLPHPFQFSLDKISLGFYEGVSAIDDIRFE 763
Cdd:cd06263     75 -LSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIALDDISLS 153

                   .
gi 1799935035  764 N 764
Cdd:cd06263    154 P 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1686-1844 1.26e-33

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 127.86  E-value: 1.26e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1686 CNFEiqdqeWTTVCGLIQDTTDDFDWSISNSAAQ-TSPHTDHTPGKGQ-SFLYVNSSAQKEGDSARITtSKFFPASLGVC 1763
Cdd:pfam00629    1 CDFE-----DGNLCGWTQDSSDDFDWERVSGPSVkTGPSSDHTQGTGSgHFMYVDTSSGAPGQTARLL-SPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1764 RVRFWFWMFASRQtGVLKVYTVEE-HGMDILMWSSSRNEENKWMYGSVVLSSNS-PFRVAFEAEVGWSQPTEFALDDISF 1841
Cdd:pfam00629   75 CLRFWYHMSGSGV-GTLRVYVRENgGTLDTLLWSISGDQGPSWKEARVTLSSSTqPFQVVFEGIRGGGSRGGIALDDISL 153

                   ...
gi 1799935035 1842 TPE 1844
Cdd:pfam00629  154 SSG 156
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1479-1630 1.37e-31

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 122.10  E-value: 1.37e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1479 CTFENGKCGWQNSLADNFNWVLGVGSPQSLRPPGDHTLGNRTGHFLYLEATAtGLINEKAHVKSSIWKESSRTCVMSFWY 1558
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSPLLPPPRSSHCLSFWY 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799935035 1559 FKLSKAMGHIQVLIKTDDGIV--KIWSESGNHGDKWNNVKLHLGKLRN-FEIIFEGIRTRDLGGGAAIDDIEFNN 1630
Cdd:cd06263     80 HMYGSGVGTLNVYVREEGGGLgtLLWSASGGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1041-1209 1.80e-28

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 113.21  E-value: 1.80e-28
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1041 CDFEDKGLCGWHQPaleqmsrnysihITNTFKWQLGRGANLYPEqeqhcPLTDHTTctEEGWYIFADSSNGEFGHTADIA 1120
Cdd:smart00137    6 CDFEEGSTCGWHQD------------SNDDGHWERVSSATGIPG-----PNRDHTT--GNGHFMFFETSSGAEGQTARLL 66
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1121 TPVISLTGPRCKIIFWNHMNGSTVGSLEVLCKSSN--KTSKLWTQSGSQGPQWNRAEVFLGIRSN-FQVIFRAKRGVSYM 1197
Cdd:smart00137   67 SPPLYENRSTHCLTFWYYMYGSGSGTLNVYVRENNgsQDTLLWSRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHS 146
                           170
                    ....*....|..
gi 1799935035  1198 GDVAVDDITFED 1209
Cdd:smart00137  147 GYIALDDILLSN 158
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1479-1632 5.94e-28

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 111.69  E-value: 5.94e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1479 CTFENGK-CGWQNSLADNFNWVLGVGSPQSLRPPGDHTLGNRTGHFLYLEATAtGLINEKAHVKSSIWKESSRTCVMSFW 1557
Cdd:pfam00629    1 CDFEDGNlCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSS-GAPGQTARLLSPLLPPSRSPQCLRFW 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1558 YFKLSKAMGHIQVLIKTDDGIV--KIWSESGNHGDKWNNVKLHLGKLRN-FEIIFEGIRTRDLGGGAAIDDIEFN--NCS 1632
Cdd:pfam00629   80 YHMSGSGVGTLRVYVRENGGTLdtLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIALDDISLSsgPCP 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1683-1843 1.44e-26

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 107.81  E-value: 1.44e-26
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1683 PGSCNFEiqdqeWTTVCGLIQDTTDDFDWSISNSA-AQTSPHTDHTPGKGqSFLYVNSSAQKEGDSARITtSKFFPASLG 1761
Cdd:smart00137    3 PGNCDFE-----EGSTCGWHQDSNDDGHWERVSSAtGIPGPNRDHTTGNG-HFMFFETSSGAEGQTARLL-SPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1762 VCRVRFWFWMFASrQTGVLKVYTVEEHGM-DILMWSSSRNEENKWMYGSVVLSSNS-PFRVAFEAEVGWSQPTEFALDDI 1839
Cdd:smart00137   76 THCLTFWYYMYGS-GSGTLNVYVRENNGSqDTLLWSRSGTQGGQWLQAEVALSSWPqPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 1799935035  1840 SFTP 1843
Cdd:smart00137  155 LLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1478-1630 2.52e-26

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 107.04  E-value: 2.52e-26
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1478 SCTFENGK-CGWQNSLADNFNWVLGVGSPQSLRPPGDHTLGNrtGHFLYLEATAtGLINEKAHVKSSIWKESSRTCVMSF 1556
Cdd:smart00137    5 NCDFEEGStCGWHQDSNDDGHWERVSSATGIPGPNRDHTTGN--GHFMFFETSS-GAEGQTARLLSPPLYENRSTHCLTF 81
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1799935035  1557 WYFKLSKAMGHIQVLIKTDDGIV--KIWSESGNHGDKWNNVKLHLGKLRN-FEIIFEGIRTRDLGGGAAIDDIEFNN 1630
Cdd:smart00137   82 WYYMYGSGSGTLNVYVRENNGSQdtLLWSRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGYIALDDILLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
605-764 2.90e-24

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 101.27  E-value: 2.90e-24
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   605 CDFERES-CGWIeTVNADEFDWVRSSSSALPPAfqkqaPPWDHTYnkPEGHFMFILKNSSSISQIARLRSPKFRQTGSNC 683
Cdd:smart00137    6 CDFEEGStCGWH-QDSNDDGHWERVSSATGIPG-----PNRDHTT--GNGHFMFFETSSGAEGQTARLLSPPLYENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   684 TLSFWYYNYGQSVGAAELQLIVDGLKQPTVLWRTYYNEGNQWLKAVIQLGRLPHPFQFSLDKISLGFYEGVSAIDDIRFE 763
Cdd:smart00137   78 CLTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQPFQVVFEGTRGKGHSGYIALDDILLS 157

                    .
gi 1799935035   764 N 764
Cdd:smart00137  158 N 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
61-213 1.14e-21

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 93.60  E-value: 1.14e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   61 CDFETNLCKALPEFNLHPVWTRRNGQSGMGPPYSDHS-GNESAYFL--SLSSEMQSSSATLRTNVFLPTDEEHiCqIRFH 137
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHThGTGSGHYLyvESSSGREGQKARLLSPLLPPPRSSH-C-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799935035  138 YWVSQMS-GALMVGLQKHSEDTITNIWQVSGELRNQWNVNNITINST-EKYQVIFWGMVETQTKGEtVAIDDITFSEG 213
Cdd:cd06263     79 YHMYGSGvGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASsKPFQVVFEGVRGSGSRGD-IALDDISLSPG 155
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
425-585 1.45e-19

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 87.80  E-value: 1.45e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  425 CDFETD-LCGWKPLSKGDADWniKKEQAPLDRKLPGRGHTNNMGHGTFIYFSGSHQMNTKTAmcHLESPfLVKLSPGLTC 503
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDW--ERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTA--RLLSP-LLPPSRSPQC 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  504 cqVRFWYWLSQDSQ--LSVFRRTALNGSLEKLRDISGLPEMNWTKVNIPVESAAEelPFQIVLQGTVLT-THAAVAIDDI 580
Cdd:pfam00629   76 --LRFWYHMSGSGVgtLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQ--PFQVVFEGIRGGgSRGGIALDDI 151

                   ....*
gi 1799935035  581 GISEE 585
Cdd:pfam00629  152 SLSSG 156
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
425-586 1.08e-18

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 85.12  E-value: 1.08e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  425 CDFETDLCGWKPLSKGDADWNIKKEQAPLDrkLPGRGHTNNMGHGTFIYFSGSHQMNTKTAmcHLESPfLVKLSPGLTCc 504
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSP--GTPPDHTHGTGSGHYLYVESSSGREGQKA--RLLSP-LLPPPRSSHC- 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  505 qVRFWYWLSQDS--QLSVFRRTALNGSLEKLRDISGLPEMNWTKVNIPVESAAEelPFQIVLQGTVLTTHAA-VAIDDIG 581
Cdd:cd06263     75 -LSFWYHMYGSGvgTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSK--PFQVVFEGVRGSGSRGdIALDDIS 151

                   ....*.
gi 1799935035  582 ISE-EC 586
Cdd:cd06263    152 LSPgPC 157
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
61-213 9.45e-17

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 79.71  E-value: 9.45e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   61 CDFET-NLC--KALPEFNLHpvWTRRNGQSGMGPPYSDHS-GNESAYFL--SLSSEMQSSSATLRTNVFLPTDEEHiCqI 134
Cdd:pfam00629    1 CDFEDgNLCgwTQDSSDDFD--WERVSGPSVKTGPSSDHTqGTGSGHFMyvDTSSGAPGQTARLLSPLLPPSRSPQ-C-L 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  135 RFHYwvsQMSG----ALMVGLQKHSEDTITNIWQVSGELRNQWNVNNITINS-TEKYQVIFWGMVETQTKGeTVAIDDIT 209
Cdd:pfam00629   77 RFWY---HMSGsgvgTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSsTQPFQVVFEGIRGGGSRG-GIALDDIS 152

                   ....
gi 1799935035  210 FSEG 213
Cdd:pfam00629  153 LSSG 156
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
59-213 5.78e-15

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 74.30  E-value: 5.78e-15
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035    59 DKCDFETN-LC--KALPEFNLHpvWTRRNGQSGMGPPYSDHSGNESAY-FLSLSSEMQSSSATLRTNVFLPTDEEHiCqI 134
Cdd:smart00137    4 GNCDFEEGsTCgwHQDSNDDGH--WERVSSATGIPGPNRDHTTGNGHFmFFETSSGAEGQTARLLSPPLYENRSTH-C-L 79
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   135 RFHYwvsQMSG----ALMVGLQKHSEDTITNIWQVSGELRNQWNVNNITINS-TEKYQVIFWGMVETQTKGEtVAIDDIT 209
Cdd:smart00137   80 TFWY---YMYGsgsgTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGY-IALDDIL 155

                    ....
gi 1799935035   210 FSEG 213
Cdd:smart00137  156 LSNG 159
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1220-1251 4.78e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 4.78e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1799935035 1220 CTSEEFICANKYCIPKNNLCDFVNDCADNSDE 1251
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1220-1251 7.15e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.94  E-value: 7.15e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1799935035  1220 CTSEEFICANKYCIPKNNLCDFVNDCADNSDE 1251
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1001-1036 1.74e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 1.74e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1001 CTEKEFVCrASGHCIQMIQKCDFRPDCSDKSDESAC 1036
Cdd:cd00112      1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1641-1676 2.02e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 2.02e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1641 CPAlTDFVCGNGNCIESQFICDYKPDCEDLSDEADC 1676
Cdd:cd00112      1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
776-810 5.69e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.69e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035  776 GPNHFWCRDTKaCIDSLLVCDLVDDCGDGSDEDSC 810
Cdd:cd00112      2 PPNEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1906-1940 5.81e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.81e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035 1906 CKETEFLCPSQGCVPSLLRCDGVPDCHLSEDEVGC 1940
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
224-372 6.01e-07

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 51.21  E-value: 6.01e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  224 SFELG-ICEWHSDLPAkPAQWAQLQaGHKIASCSFLKDWSNKTEGHFEWLEANDNALYESASLNSSMCHCSSKNCHFQFH 302
Cdd:pfam00629    2 DFEDGnLCGWTQDSSD-DFDWERVS-GPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQCLRFW 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799935035  303 YSMADSS--ALKAVLLMNQEEQ--VLWETNSMTKREWVKVNIQLPTGLENIKLMFKGTL-HSRAGFICLNSIQLL 372
Cdd:pfam00629   80 YHMSGSGvgTLRVYVRENGGTLdtLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRgGGSRGGIALDDISLS 154
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1001-1033 1.30e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.47  E-value: 1.30e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 1799935035  1001 CTEKEFVCrASGHCIQMIQKCDFRPDCSDKSDE 1033
Cdd:smart00192    2 CPPGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1640-1673 2.87e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 45.70  E-value: 2.87e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1799935035  1640 ECPAlTDFVCGNGNCIESQFICDYKPDCEDLSDE 1673
Cdd:smart00192    1 TCPP-GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1441-1475 4.55e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 44.89  E-value: 4.55e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035 1441 CSHGHRQCQNGKCYRPEQSCDFEDNCGDNTDESKC 1475
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1858-1893 4.82e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 44.89  E-value: 4.82e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1858 CSGDKFTCAYvQQCLSLAARCNGVEECMDGSDEMNC 1893
Cdd:cd00112      1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEENC 35
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
224-373 5.50e-06

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 48.49  E-value: 5.50e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   224 SFELG-ICEWHSDLpAKPAQWAQLQAGHKIAScSFLKDWSNktEGHFEWLEANDNALYESASLNSSMCHCSSKNCHFQFH 302
Cdd:smart00137    7 DFEEGsTCGWHQDS-NDDGHWERVSSATGIPG-PNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLYENRSTHCLTFW 82
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799935035   303 YSMADSSALKAVL----LMNQEEQVLWETNSMTKREWVKVNIQLPTGLENIKLMFKGTL-HSRAGFICLNSIQLLD 373
Cdd:smart00137   83 YYMYGSGSGTLNVyvreNNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQPFQVVFEGTRgKGHSGYIALDDILLSN 158
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1906-1937 6.48e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.55  E-value: 6.48e-06
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1799935035  1906 CKETEFLCPSQGCVPSLLRCDGVPDCHLSEDE 1937
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1646-1676 8.05e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.55  E-value: 8.05e-06
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1799935035 1646 DFVCGNGNCIESQFICDYKPDCEDLSDEADC 1676
Cdd:pfam00057    7 EFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
224-373 1.37e-05

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 47.37  E-value: 1.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  224 SFELGICEWHSDLPAKpAQWAQLQAGHKIASCSFLKDwSNKTEGHFEWLEANDNALYESASLNSSMCH-CSSKNChFQFH 302
Cdd:cd06263      2 DFEDGLCGWTQDSTDD-FDWTRVSGSTPSPGTPPDHT-HGTGSGHYLYVESSSGREGQKARLLSPLLPpPRSSHC-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799935035  303 YSMADSSALKAVLLMNQE----EQVLWETNSMTKREWVKVNIQLPTGLENIKLMFKGTLHSR-AGFICLNSIQLLD 373
Cdd:cd06263     79 YHMYGSGVGTLNVYVREEggglGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGsRGDIALDDISLSP 154
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
776-807 4.14e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 42.24  E-value: 4.14e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1799935035   776 GPNHFWCRDTKaCIDSLLVCDLVDDCGDGSDE 807
Cdd:smart00192    3 PPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1906-1940 4.76e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.24  E-value: 4.76e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035 1906 CKETEFLCPSQGCVPSLLRCDGVPDCHLSEDEVGC 1940
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
776-810 7.40e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.85  E-value: 7.40e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035  776 GPNHFWCRDTKaCIDSLLVCDLVDDCGDGSDEDSC 810
Cdd:pfam00057    4 SPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1857-1890 1.07e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.08  E-value: 1.07e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1799935035  1857 TCSGDKFTCAYvQQCLSLAARCNGVEECMDGSDE 1890
Cdd:smart00192    1 TCPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1441-1472 1.56e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 40.69  E-value: 1.56e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1799935035  1441 CSHGHRQCQNGKCYRPEQSCDFEDNCGDNTDE 1472
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1945-1981 2.92e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 39.88  E-value: 2.92e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1799935035 1945 CSNGSLLCAStNQCIAFSQRCDGIVDCIDSSlDESGC 1981
Cdd:cd00112      1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGS-DEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1001-1036 1.94e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 37.61  E-value: 1.94e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1001 CTEKEFVCRaSGHCIQMIQKCDFRPDCSDKSDESAC 1036
Cdd:pfam00057    3 CSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1218-1251 2.38e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 37.61  E-value: 2.38e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1799935035 1218 KPCTSEEFICANKYCIPKNNLCDFVNDCADNSDE 1251
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1857-1893 3.78e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 36.84  E-value: 3.78e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1799935035 1857 TCSGDKFTCAyVQQCLSLAARCNGVEECMDGSDEMNC 1893
Cdd:pfam00057    2 TCSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDEENC 37
 
Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
816-971 7.76e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 168.71  E-value: 7.76e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  816 CNFENGLCNWEQDVEDDFDWIRIQGPTPTVNTGPlkDHTTGTARGHYLYLESSePRQFQDKAVLLSPLFNPSGNGTCvFR 895
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESS-SGREGQKARLLSPLLPPPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1799935035  896 FHYHMFGKEVYKLSVFQRTVNNTKGWLLWYKFGNQENRWIRQTLFISS-SKPFQILMKGTVGDGFTGDIGLDDVSFL 971
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLS 153
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1263-1418 8.10e-46

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 162.93  E-value: 8.10e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1263 CNFEFELCGWKQDEDDDFDWHLRTSSTTKLGTGPatDHTLQEPSGHYIFIKSSFFQlPGQKARISSPVLSR-RNKNCkII 1341
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPpRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799935035 1342 FYYHMYGADIGSLIIYQRTTL-KHEKILLNLTGNQGNFWQRKALTLSGDgDEDFQVVFEGIAGKGPKDGIALDDLTFS 1418
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGgGLGTLLWSASGGQGNQWQEAEVTLSAS-SKPFQVVFEGVRGSGSRGDIALDDISLS 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
816-974 9.27e-45

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 159.84  E-value: 9.27e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  816 CNFENG-LCNWEQDVEDDFDWIRIQGPTPtvNTGPLKDHTTGTARGHYLYLESSEPrQFQDKAVLLSPLFNPSGNGTCvF 894
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSV--KTGPSSDHTQGTGSGHFMYVDTSSG-APGQTARLLSPLLPPSRSPQC-L 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  895 RFHYHMFGKEVYKLSVFQRTVNNTKGWLLWYKFGNQENRWIRQTLFISS-SKPFQILMKGTVGDGFTGDIGLDDVSFLGC 973
Cdd:pfam00629   77 RFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSsTQPFQVVFEGIRGGGSRGGIALDDISLSSG 156

                   .
gi 1799935035  974 T 974
Cdd:pfam00629  157 P 157
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1263-1421 7.89e-43

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 154.44  E-value: 7.89e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1263 CNFEFE-LCGWKQDEDDDFDWHLRTSSTtkLGTGPATDHTLQEPSGHYIFIKSSFFQlPGQKARISSPVLSRRNKNCKII 1341
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPS--VKTGPSSDHTQGTGSGHFMYVDTSSGA-PGQTARLLSPLLPPSRSPQCLR 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1342 FYYHMYGADIGSLIIYQRTTLKHEKILL-NLTGNQGNFWQRKALTLSgDGDEDFQVVFEGIAGKGPKDGIALDDLTF-SR 1419
Cdd:pfam00629   78 FWYHMSGSGVGTLRVYVRENGGTLDTLLwSISGDQGPSWKEARVTLS-SSTQPFQVVFEGIRGGGSRGGIALDDISLsSG 156

                   ..
gi 1799935035 1420 EC 1421
Cdd:pfam00629  157 PC 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
811-971 8.18e-37

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 137.09  E-value: 8.18e-37
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   811 NPDLQCNFE-NGLCNWEQDVEDDFDWIRIQGPTPtvNTGPLKDHTTGTarGHYLYLESSEPRQFQdKAVLLSPLFNPSgN 889
Cdd:smart00137    1 TSPGNCDFEeGSTCGWHQDSNDDGHWERVSSATG--IPGPNRDHTTGN--GHFMFFETSSGAEGQ-TARLLSPPLYEN-R 74
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   890 GTCVFRFHYHMFGKEVYKLSVFQRTVNNTKGWLLWYKFGNQENRWIRQTLFISSS-KPFQILMKGTVGDGFTGDIGLDDV 968
Cdd:smart00137   75 STHCLTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWpQPFQVVFEGTRGKGHSGYIALDDI 154

                    ...
gi 1799935035   969 SFL 971
Cdd:smart00137  155 LLS 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1041-1207 1.26e-36

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 136.35  E-value: 1.26e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1041 CDFEDkGLCGWHQPAleqmsrnysihiTNTFKWQLGRGAnlypeQEQHCPLTDHTTCTEEGWYIFADSSNGEFGHTADIA 1120
Cdd:cd06263      1 CDFED-GLCGWTQDS------------TDDFDWTRVSGS-----TPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLL 62
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1121 TPVISLT-GPRCkIIFWNHMNGSTVGSLEVLCKSSN--KTSKLWTQSGSQGPQWNRAEVFLGIRSN-FQVIFRAKRGVSY 1196
Cdd:cd06263     63 SPLLPPPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGS 141
                          170
                   ....*....|.
gi 1799935035 1197 MGDVAVDDITF 1207
Cdd:cd06263    142 RGDIALDDISL 152
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
605-766 1.40e-36

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 136.34  E-value: 1.40e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  605 CDFERES-CGWIETvNADEFDWVRSSSSAlppafQKQAPPWDHTYNKPEGHFMFILKNSSSISQIARLRSPKFRQTGSNC 683
Cdd:pfam00629    1 CDFEDGNlCGWTQD-SSDDFDWERVSGPS-----VKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  684 TLSFWYYNYGQSVGAAELQLIVDGLKQPTVLWRTYYNEGNQWLKAVIQLGRLPHPFQFSLDKISLGFYEGVSAIDDIRF- 762
Cdd:pfam00629   75 CLRFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGGSRGGIALDDISLs 154

                   ....*
gi 1799935035  763 -ENCA 766
Cdd:pfam00629  155 sGPCP 159
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1041-1211 5.17e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 131.72  E-value: 5.17e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1041 CDFEDKGLCGWHQPaleqmsrnysihITNTFKWQLGRGANLYpeqeqHCPLTDHTTCTEEGWYIFADSSNGEFGHTADIA 1120
Cdd:pfam00629    1 CDFEDGNLCGWTQD------------SSDDFDWERVSGPSVK-----TGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLL 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1121 TPVISLTGPRCKIIFWNHMNGSTVGSLEVLCKSSNKT--SKLWTQSGSQGPQWNRAEVFLGIRSN-FQVIFRAKRGVSYM 1197
Cdd:pfam00629   64 SPLLPPSRSPQCLRFWYHMSGSGVGTLRVYVRENGGTldTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSR 143
                          170
                   ....*....|....*.
gi 1799935035 1198 GDVAVDDITF--EDCS 1211
Cdd:pfam00629  144 GGIALDDISLssGPCP 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1258-1418 2.50e-34

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 130.16  E-value: 2.50e-34
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1258 TSIGHCNFEFE-LCGWKQDEDDDFDWHlRTSSTTKlGTGPATDHTLqePSGHYIFIKSSFFQlPGQKARISSPVLSRRNK 1336
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHWE-RVSSATG-IPGPNRDHTT--GNGHFMFFETSSGA-EGQTARLLSPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1337 NCKIIFYYHMYGADIGSLIIYQRtTLKHE--KILLNLTGNQGNFWQRKALTLSGDgDEDFQVVFEGIAGKGPKDGIALDD 1414
Cdd:smart00137   76 THCLTFWYYMYGSGSGTLNVYVR-ENNGSqdTLLWSRSGTQGGQWLQAEVALSSW-PQPFQVVFEGTRGKGHSGYIALDD 153

                    ....
gi 1799935035  1415 LTFS 1418
Cdd:smart00137  154 ILLS 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1686-1845 6.69e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 128.65  E-value: 6.69e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1686 CNFEIQDqewttvCGLIQDTTDDFDWSISNSAAQTS-PHTDHTPGKGQ-SFLYVNSSAQKEGDSARITTSKFFPASLGVC 1763
Cdd:cd06263      1 CDFEDGL------CGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSgHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1764 rVRFWFWMFaSRQTGVLKVYTVEE-HGMDILMWSSSRNEENKWMYGSVVLSSNS-PFRVAFEAEVGWSQPTEFALDDISF 1841
Cdd:cd06263     75 -LSFWYHMY-GSGVGTLNVYVREEgGGLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                   ....*
gi 1799935035 1842 TP-EC 1845
Cdd:cd06263    153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
605-764 9.95e-34

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 128.26  E-value: 9.95e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  605 CDFERESCGWIEtVNADEFDWVRSSSSALPPAfqkqaPPWDHTYNKPEGHFMFILKNSSSISQIARLRSPKFRQT-GSNC 683
Cdd:cd06263      1 CDFEDGLCGWTQ-DSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPrSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  684 tLSFWYYNYGQSVGAAELQLIVDGLKQPTVLWRTYYNEGNQWLKAVIQLGRLPHPFQFSLDKISLGFYEGVSAIDDIRFE 763
Cdd:cd06263     75 -LSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIALDDISLS 153

                   .
gi 1799935035  764 N 764
Cdd:cd06263    154 P 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1686-1844 1.26e-33

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 127.86  E-value: 1.26e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1686 CNFEiqdqeWTTVCGLIQDTTDDFDWSISNSAAQ-TSPHTDHTPGKGQ-SFLYVNSSAQKEGDSARITtSKFFPASLGVC 1763
Cdd:pfam00629    1 CDFE-----DGNLCGWTQDSSDDFDWERVSGPSVkTGPSSDHTQGTGSgHFMYVDTSSGAPGQTARLL-SPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1764 RVRFWFWMFASRQtGVLKVYTVEE-HGMDILMWSSSRNEENKWMYGSVVLSSNS-PFRVAFEAEVGWSQPTEFALDDISF 1841
Cdd:pfam00629   75 CLRFWYHMSGSGV-GTLRVYVRENgGTLDTLLWSISGDQGPSWKEARVTLSSSTqPFQVVFEGIRGGGSRGGIALDDISL 153

                   ...
gi 1799935035 1842 TPE 1844
Cdd:pfam00629  154 SSG 156
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1479-1630 1.37e-31

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 122.10  E-value: 1.37e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1479 CTFENGKCGWQNSLADNFNWVLGVGSPQSLRPPGDHTLGNRTGHFLYLEATAtGLINEKAHVKSSIWKESSRTCVMSFWY 1558
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSPLLPPPRSSHCLSFWY 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799935035 1559 FKLSKAMGHIQVLIKTDDGIV--KIWSESGNHGDKWNNVKLHLGKLRN-FEIIFEGIRTRDLGGGAAIDDIEFNN 1630
Cdd:cd06263     80 HMYGSGVGTLNVYVREEGGGLgtLLWSASGGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1041-1209 1.80e-28

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 113.21  E-value: 1.80e-28
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1041 CDFEDKGLCGWHQPaleqmsrnysihITNTFKWQLGRGANLYPEqeqhcPLTDHTTctEEGWYIFADSSNGEFGHTADIA 1120
Cdd:smart00137    6 CDFEEGSTCGWHQD------------SNDDGHWERVSSATGIPG-----PNRDHTT--GNGHFMFFETSSGAEGQTARLL 66
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1121 TPVISLTGPRCKIIFWNHMNGSTVGSLEVLCKSSN--KTSKLWTQSGSQGPQWNRAEVFLGIRSN-FQVIFRAKRGVSYM 1197
Cdd:smart00137   67 SPPLYENRSTHCLTFWYYMYGSGSGTLNVYVRENNgsQDTLLWSRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHS 146
                           170
                    ....*....|..
gi 1799935035  1198 GDVAVDDITFED 1209
Cdd:smart00137  147 GYIALDDILLSN 158
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1479-1632 5.94e-28

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 111.69  E-value: 5.94e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1479 CTFENGK-CGWQNSLADNFNWVLGVGSPQSLRPPGDHTLGNRTGHFLYLEATAtGLINEKAHVKSSIWKESSRTCVMSFW 1557
Cdd:pfam00629    1 CDFEDGNlCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSS-GAPGQTARLLSPLLPPSRSPQCLRFW 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035 1558 YFKLSKAMGHIQVLIKTDDGIV--KIWSESGNHGDKWNNVKLHLGKLRN-FEIIFEGIRTRDLGGGAAIDDIEFN--NCS 1632
Cdd:pfam00629   80 YHMSGSGVGTLRVYVRENGGTLdtLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIALDDISLSsgPCP 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1683-1843 1.44e-26

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 107.81  E-value: 1.44e-26
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1683 PGSCNFEiqdqeWTTVCGLIQDTTDDFDWSISNSA-AQTSPHTDHTPGKGqSFLYVNSSAQKEGDSARITtSKFFPASLG 1761
Cdd:smart00137    3 PGNCDFE-----EGSTCGWHQDSNDDGHWERVSSAtGIPGPNRDHTTGNG-HFMFFETSSGAEGQTARLL-SPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1762 VCRVRFWFWMFASrQTGVLKVYTVEEHGM-DILMWSSSRNEENKWMYGSVVLSSNS-PFRVAFEAEVGWSQPTEFALDDI 1839
Cdd:smart00137   76 THCLTFWYYMYGS-GSGTLNVYVRENNGSqDTLLWSRSGTQGGQWLQAEVALSSWPqPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 1799935035  1840 SFTP 1843
Cdd:smart00137  155 LLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1478-1630 2.52e-26

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 107.04  E-value: 2.52e-26
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  1478 SCTFENGK-CGWQNSLADNFNWVLGVGSPQSLRPPGDHTLGNrtGHFLYLEATAtGLINEKAHVKSSIWKESSRTCVMSF 1556
Cdd:smart00137    5 NCDFEEGStCGWHQDSNDDGHWERVSSATGIPGPNRDHTTGN--GHFMFFETSS-GAEGQTARLLSPPLYENRSTHCLTF 81
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1799935035  1557 WYFKLSKAMGHIQVLIKTDDGIV--KIWSESGNHGDKWNNVKLHLGKLRN-FEIIFEGIRTRDLGGGAAIDDIEFNN 1630
Cdd:smart00137   82 WYYMYGSGSGTLNVYVRENNGSQdtLLWSRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGYIALDDILLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
605-764 2.90e-24

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 101.27  E-value: 2.90e-24
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   605 CDFERES-CGWIeTVNADEFDWVRSSSSALPPAfqkqaPPWDHTYnkPEGHFMFILKNSSSISQIARLRSPKFRQTGSNC 683
Cdd:smart00137    6 CDFEEGStCGWH-QDSNDDGHWERVSSATGIPG-----PNRDHTT--GNGHFMFFETSSGAEGQTARLLSPPLYENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   684 TLSFWYYNYGQSVGAAELQLIVDGLKQPTVLWRTYYNEGNQWLKAVIQLGRLPHPFQFSLDKISLGFYEGVSAIDDIRFE 763
Cdd:smart00137   78 CLTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQPFQVVFEGTRGKGHSGYIALDDILLS 157

                    .
gi 1799935035   764 N 764
Cdd:smart00137  158 N 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
61-213 1.14e-21

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 93.60  E-value: 1.14e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   61 CDFETNLCKALPEFNLHPVWTRRNGQSGMGPPYSDHS-GNESAYFL--SLSSEMQSSSATLRTNVFLPTDEEHiCqIRFH 137
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHThGTGSGHYLyvESSSGREGQKARLLSPLLPPPRSSH-C-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799935035  138 YWVSQMS-GALMVGLQKHSEDTITNIWQVSGELRNQWNVNNITINST-EKYQVIFWGMVETQTKGEtVAIDDITFSEG 213
Cdd:cd06263     79 YHMYGSGvGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASsKPFQVVFEGVRGSGSRGD-IALDDISLSPG 155
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
425-585 1.45e-19

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 87.80  E-value: 1.45e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  425 CDFETD-LCGWKPLSKGDADWniKKEQAPLDRKLPGRGHTNNMGHGTFIYFSGSHQMNTKTAmcHLESPfLVKLSPGLTC 503
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDW--ERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTA--RLLSP-LLPPSRSPQC 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  504 cqVRFWYWLSQDSQ--LSVFRRTALNGSLEKLRDISGLPEMNWTKVNIPVESAAEelPFQIVLQGTVLT-THAAVAIDDI 580
Cdd:pfam00629   76 --LRFWYHMSGSGVgtLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQ--PFQVVFEGIRGGgSRGGIALDDI 151

                   ....*
gi 1799935035  581 GISEE 585
Cdd:pfam00629  152 SLSSG 156
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
425-586 1.08e-18

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 85.12  E-value: 1.08e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  425 CDFETDLCGWKPLSKGDADWNIKKEQAPLDrkLPGRGHTNNMGHGTFIYFSGSHQMNTKTAmcHLESPfLVKLSPGLTCc 504
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSP--GTPPDHTHGTGSGHYLYVESSSGREGQKA--RLLSP-LLPPPRSSHC- 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  505 qVRFWYWLSQDS--QLSVFRRTALNGSLEKLRDISGLPEMNWTKVNIPVESAAEelPFQIVLQGTVLTTHAA-VAIDDIG 581
Cdd:cd06263     75 -LSFWYHMYGSGvgTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSK--PFQVVFEGVRGSGSRGdIALDDIS 151

                   ....*.
gi 1799935035  582 ISE-EC 586
Cdd:cd06263    152 LSPgPC 157
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
61-213 9.45e-17

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 79.71  E-value: 9.45e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   61 CDFET-NLC--KALPEFNLHpvWTRRNGQSGMGPPYSDHS-GNESAYFL--SLSSEMQSSSATLRTNVFLPTDEEHiCqI 134
Cdd:pfam00629    1 CDFEDgNLCgwTQDSSDDFD--WERVSGPSVKTGPSSDHTqGTGSGHFMyvDTSSGAPGQTARLLSPLLPPSRSPQ-C-L 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  135 RFHYwvsQMSG----ALMVGLQKHSEDTITNIWQVSGELRNQWNVNNITINS-TEKYQVIFWGMVETQTKGeTVAIDDIT 209
Cdd:pfam00629   77 RFWY---HMSGsgvgTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSsTQPFQVVFEGIRGGGSRG-GIALDDIS 152

                   ....
gi 1799935035  210 FSEG 213
Cdd:pfam00629  153 LSSG 156
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
59-213 5.78e-15

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 74.30  E-value: 5.78e-15
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035    59 DKCDFETN-LC--KALPEFNLHpvWTRRNGQSGMGPPYSDHSGNESAY-FLSLSSEMQSSSATLRTNVFLPTDEEHiCqI 134
Cdd:smart00137    4 GNCDFEEGsTCgwHQDSNDDGH--WERVSSATGIPGPNRDHTTGNGHFmFFETSSGAEGQTARLLSPPLYENRSTH-C-L 79
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   135 RFHYwvsQMSG----ALMVGLQKHSEDTITNIWQVSGELRNQWNVNNITINS-TEKYQVIFWGMVETQTKGEtVAIDDIT 209
Cdd:smart00137   80 TFWY---YMYGsgsgTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGY-IALDDIL 155

                    ....
gi 1799935035   210 FSEG 213
Cdd:smart00137  156 LSNG 159
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1220-1251 4.78e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 4.78e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1799935035 1220 CTSEEFICANKYCIPKNNLCDFVNDCADNSDE 1251
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1220-1251 7.15e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.94  E-value: 7.15e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1799935035  1220 CTSEEFICANKYCIPKNNLCDFVNDCADNSDE 1251
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1001-1036 1.74e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 1.74e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1001 CTEKEFVCrASGHCIQMIQKCDFRPDCSDKSDESAC 1036
Cdd:cd00112      1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1641-1676 2.02e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 2.02e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1641 CPAlTDFVCGNGNCIESQFICDYKPDCEDLSDEADC 1676
Cdd:cd00112      1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
776-810 5.69e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.69e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035  776 GPNHFWCRDTKaCIDSLLVCDLVDDCGDGSDEDSC 810
Cdd:cd00112      2 PPNEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1906-1940 5.81e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.59  E-value: 5.81e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035 1906 CKETEFLCPSQGCVPSLLRCDGVPDCHLSEDEVGC 1940
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
224-372 6.01e-07

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 51.21  E-value: 6.01e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  224 SFELG-ICEWHSDLPAkPAQWAQLQaGHKIASCSFLKDWSNKTEGHFEWLEANDNALYESASLNSSMCHCSSKNCHFQFH 302
Cdd:pfam00629    2 DFEDGnLCGWTQDSSD-DFDWERVS-GPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQCLRFW 79
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799935035  303 YSMADSS--ALKAVLLMNQEEQ--VLWETNSMTKREWVKVNIQLPTGLENIKLMFKGTL-HSRAGFICLNSIQLL 372
Cdd:pfam00629   80 YHMSGSGvgTLRVYVRENGGTLdtLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRgGGSRGGIALDDISLS 154
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1001-1033 1.30e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.47  E-value: 1.30e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 1799935035  1001 CTEKEFVCrASGHCIQMIQKCDFRPDCSDKSDE 1033
Cdd:smart00192    2 CPPGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1640-1673 2.87e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 45.70  E-value: 2.87e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1799935035  1640 ECPAlTDFVCGNGNCIESQFICDYKPDCEDLSDE 1673
Cdd:smart00192    1 TCPP-GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1441-1475 4.55e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 44.89  E-value: 4.55e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035 1441 CSHGHRQCQNGKCYRPEQSCDFEDNCGDNTDESKC 1475
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1858-1893 4.82e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 44.89  E-value: 4.82e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1858 CSGDKFTCAYvQQCLSLAARCNGVEECMDGSDEMNC 1893
Cdd:cd00112      1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEENC 35
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
224-373 5.50e-06

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 48.49  E-value: 5.50e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035   224 SFELG-ICEWHSDLpAKPAQWAQLQAGHKIAScSFLKDWSNktEGHFEWLEANDNALYESASLNSSMCHCSSKNCHFQFH 302
Cdd:smart00137    7 DFEEGsTCGWHQDS-NDDGHWERVSSATGIPG-PNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLYENRSTHCLTFW 82
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799935035   303 YSMADSSALKAVL----LMNQEEQVLWETNSMTKREWVKVNIQLPTGLENIKLMFKGTL-HSRAGFICLNSIQLLD 373
Cdd:smart00137   83 YYMYGSGSGTLNVyvreNNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQPFQVVFEGTRgKGHSGYIALDDILLSN 158
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1906-1937 6.48e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.55  E-value: 6.48e-06
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1799935035  1906 CKETEFLCPSQGCVPSLLRCDGVPDCHLSEDE 1937
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1646-1676 8.05e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.55  E-value: 8.05e-06
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1799935035 1646 DFVCGNGNCIESQFICDYKPDCEDLSDEADC 1676
Cdd:pfam00057    7 EFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
224-373 1.37e-05

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 47.37  E-value: 1.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799935035  224 SFELGICEWHSDLPAKpAQWAQLQAGHKIASCSFLKDwSNKTEGHFEWLEANDNALYESASLNSSMCH-CSSKNChFQFH 302
Cdd:cd06263      2 DFEDGLCGWTQDSTDD-FDWTRVSGSTPSPGTPPDHT-HGTGSGHYLYVESSSGREGQKARLLSPLLPpPRSSHC-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799935035  303 YSMADSSALKAVLLMNQE----EQVLWETNSMTKREWVKVNIQLPTGLENIKLMFKGTLHSR-AGFICLNSIQLLD 373
Cdd:cd06263     79 YHMYGSGVGTLNVYVREEggglGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGsRGDIALDDISLSP 154
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
776-807 4.14e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 42.24  E-value: 4.14e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1799935035   776 GPNHFWCRDTKaCIDSLLVCDLVDDCGDGSDE 807
Cdd:smart00192    3 PPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1906-1940 4.76e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.24  E-value: 4.76e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035 1906 CKETEFLCPSQGCVPSLLRCDGVPDCHLSEDEVGC 1940
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
776-810 7.40e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.85  E-value: 7.40e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1799935035  776 GPNHFWCRDTKaCIDSLLVCDLVDDCGDGSDEDSC 810
Cdd:pfam00057    4 SPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1857-1890 1.07e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.08  E-value: 1.07e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1799935035  1857 TCSGDKFTCAYvQQCLSLAARCNGVEECMDGSDE 1890
Cdd:smart00192    1 TCPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1441-1472 1.56e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 40.69  E-value: 1.56e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1799935035  1441 CSHGHRQCQNGKCYRPEQSCDFEDNCGDNTDE 1472
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1945-1981 2.92e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 39.88  E-value: 2.92e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1799935035 1945 CSNGSLLCAStNQCIAFSQRCDGIVDCIDSSlDESGC 1981
Cdd:cd00112      1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGS-DEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1001-1036 1.94e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 37.61  E-value: 1.94e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1799935035 1001 CTEKEFVCRaSGHCIQMIQKCDFRPDCSDKSDESAC 1036
Cdd:pfam00057    3 CSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1218-1251 2.38e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 37.61  E-value: 2.38e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1799935035 1218 KPCTSEEFICANKYCIPKNNLCDFVNDCADNSDE 1251
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1857-1893 3.78e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 36.84  E-value: 3.78e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1799935035 1857 TCSGDKFTCAyVQQCLSLAARCNGVEECMDGSDEMNC 1893
Cdd:pfam00057    2 TCSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDEENC 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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