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Conserved domains on  [gi|1958809771|ref|XP_038956455|]
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zinc finger protein 280C isoform X2 [Rattus norvegicus]

Protein Classification

zinc finger protein 280A/B/C/D( domain architecture ID 10619755)

zinc finger protein 280A/B/C/D may function as a transcription factor

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4195 pfam13836
Domain of unknown function (DUF4195); This family is found at the N-terminus of metazoan ...
50-226 9.14e-69

Domain of unknown function (DUF4195); This family is found at the N-terminus of metazoan proteins that carry PHD-like zinc-finger domains. The function is not known.


:

Pssm-ID: 463993 [Multi-domain]  Cd Length: 184  Bit Score: 223.86  E-value: 9.14e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958809771  50 IFVGEISSSKPAISNILNRCSPGSSSKGLKNGSFSPALSNIFKPTNQHYRNPPSHPLIALP-SFYPAPKSSESSD-VQTV 127
Cdd:pfam13836   1 IFVGEISSSKPAISNILNRVNPGSSSRRIKNGHLSPGIAHIFKPTSQHYVTPTSNPVAALPvSFHPESRSSDSSViVQPL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958809771 128 SKPTFLKTSPQDDSGASSASLLDSTKDI---PSSNVLQKSTGVNQTLR-LKHPSSSKVNSVNPKKPKTNASISETGRGSA 203
Cdd:pfam13836  81 SKPDYKKNSPQVVSDNSSDLLFDLTQDTvpqSQVGPALSVEGMNESSFvSKRPSTSEVNSVNPKKPKLSEGISGTNSSAS 160
                         170       180
                  ....*....|....*....|....
gi 1958809771 204 SSLNMSPSEASSQVVLSN-MNTSS 226
Cdd:pfam13836 161 SPSIKSPSVTSSQVTPSKgTNTSS 184
 
Name Accession Description Interval E-value
DUF4195 pfam13836
Domain of unknown function (DUF4195); This family is found at the N-terminus of metazoan ...
50-226 9.14e-69

Domain of unknown function (DUF4195); This family is found at the N-terminus of metazoan proteins that carry PHD-like zinc-finger domains. The function is not known.


Pssm-ID: 463993 [Multi-domain]  Cd Length: 184  Bit Score: 223.86  E-value: 9.14e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958809771  50 IFVGEISSSKPAISNILNRCSPGSSSKGLKNGSFSPALSNIFKPTNQHYRNPPSHPLIALP-SFYPAPKSSESSD-VQTV 127
Cdd:pfam13836   1 IFVGEISSSKPAISNILNRVNPGSSSRRIKNGHLSPGIAHIFKPTSQHYVTPTSNPVAALPvSFHPESRSSDSSViVQPL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958809771 128 SKPTFLKTSPQDDSGASSASLLDSTKDI---PSSNVLQKSTGVNQTLR-LKHPSSSKVNSVNPKKPKTNASISETGRGSA 203
Cdd:pfam13836  81 SKPDYKKNSPQVVSDNSSDLLFDLTQDTvpqSQVGPALSVEGMNESSFvSKRPSTSEVNSVNPKKPKLSEGISGTNSSAS 160
                         170       180
                  ....*....|....*....|....
gi 1958809771 204 SSLNMSPSEASSQVVLSN-MNTSS 226
Cdd:pfam13836 161 SPSIKSPSVTSSQVTPSKgTNTSS 184
 
Name Accession Description Interval E-value
DUF4195 pfam13836
Domain of unknown function (DUF4195); This family is found at the N-terminus of metazoan ...
50-226 9.14e-69

Domain of unknown function (DUF4195); This family is found at the N-terminus of metazoan proteins that carry PHD-like zinc-finger domains. The function is not known.


Pssm-ID: 463993 [Multi-domain]  Cd Length: 184  Bit Score: 223.86  E-value: 9.14e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958809771  50 IFVGEISSSKPAISNILNRCSPGSSSKGLKNGSFSPALSNIFKPTNQHYRNPPSHPLIALP-SFYPAPKSSESSD-VQTV 127
Cdd:pfam13836   1 IFVGEISSSKPAISNILNRVNPGSSSRRIKNGHLSPGIAHIFKPTSQHYVTPTSNPVAALPvSFHPESRSSDSSViVQPL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958809771 128 SKPTFLKTSPQDDSGASSASLLDSTKDI---PSSNVLQKSTGVNQTLR-LKHPSSSKVNSVNPKKPKTNASISETGRGSA 203
Cdd:pfam13836  81 SKPDYKKNSPQVVSDNSSDLLFDLTQDTvpqSQVGPALSVEGMNESSFvSKRPSTSEVNSVNPKKPKLSEGISGTNSSAS 160
                         170       180
                  ....*....|....*....|....
gi 1958809771 204 SSLNMSPSEASSQVVLSN-MNTSS 226
Cdd:pfam13836 161 SPSIKSPSVTSSQVTPSKgTNTSS 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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