|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
236-939 |
6.64e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 6.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 236 KERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTK 315
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 316 KLRT-------TEITLESLKQQLVELH-HSESLQRAREQHESVVAGLTQKYEE-QVSCLQKNLDTTITALQEQVTwfpms 386
Cdd:TIGR02168 380 QLETlrskvaqLELQIASLNNEIERLEaRLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQE----- 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 387 ncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTEL---------INRLTRSLEDSQKQCAHLLQSGS----VH 453
Cdd:TIGR02168 455 ------------ELERLEEALEELREELEEAEQALDAAERELaqlqarldsLERLQENLEGFSEGVKALLKNQSglsgIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 454 EVTQLQLQLQQAQKAHI---LSESMNKALQEELTGLKEEISLYESAA-------ELGVLPG---DVEGDLSVELTESCVG 520
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIeaaLGGRLQAVVVENLNAAKKAIAFLKQNElgrvtflPLDSIKGteiQGNDREILKNIEGFLG 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 521 LGIKNVSWKQS-------------------KANSVAQQEPPNEKL-SKDEVILklkTQVQRLLSSNSMKRHLVSELQRDL 580
Cdd:TIGR02168 603 VAKDLVKFDPKlrkalsyllggvlvvddldNALELAKKLRPGYRIvTLDGDLV---RPGGVITGGSAKTNSSILERRREI 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 581 RDCRETMEALQqskdsdrgmetktetsekttnqlwldspeainrEDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCN 660
Cdd:TIGR02168 680 EELEEKIEELE---------------------------------EKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 661 QMRQMVQEFDHDKQEAVDRCERTYQQHHE-AMKAQIRESLLAKHAAEKQHLSEVyEGTQSQLRSDLDKLNKEVAAVQEcy 739
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKElTELEAEIEELEERLEEAEEELAEA-EAEIEELEAQIEQLKEELKALRE-- 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 740 levcrEKDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQsKLNHSLPARRKATSDcgsqtDQAAYpaampnaeALVLAEE 819
Cdd:TIGR02168 804 -----ALDELRAELTLLNEEAANLRERLESLERRIAATE-RRLEDLEEQIEELSE-----DIESL--------AAEIEEL 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 820 QAHQVQQEKELTVKEALRKSeVELELKYCESIAQKVETAVQNARSRwilelpMLAEYKALLRAQQQEWAKQQEVAVAH-R 898
Cdd:TIGR02168 865 EELIEELESELEALLNERAS-LEEALALLRSELEELSEELRELESK------RSELRRELEELREKLAQLELRLEGLEvR 937
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1958766046 899 LSLALSEAKEKWKSELQNMKPNVA----SVQELEEKIHSLQKELE 939
Cdd:TIGR02168 938 IDNLQERLSEEYSLTLEEAEALENkiedDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
625-1315 |
8.20e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 8.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 625 EDILR-LKNEVEVLQQQnqelKEAEEKLRstnqdlcnqmRQMVQEFDHDKQEAVDRCERtYQQHHEAMKAQIRE--SLLA 701
Cdd:TIGR02168 192 EDILNeLERQLKSLERQ----AEKAERYK----------ELKAELRELELALLVLRLEE-LREELEELQEELKEaeEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 702 KHAAEKQhlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQSKL 781
Cdd:TIGR02168 257 ELTAELQ----ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 782 NHSlparrkatsdcgsqtdqaaypaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELkycESIAQKVETAVQN 861
Cdd:TIGR02168 333 DEL--------------------------AEELAELEEKLEELKEELESLEAELEELEAELEEL---ESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 862 ARSRWILELpmlaEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELK 941
Cdd:TIGR02168 384 LRSKVAQLE----LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 942 DEEVPvAVRAELAKARNEWNKEKQEEIHKIQ--------EQNEEDYRQ---FLEDHRNKINEVLTAAKEdfvkqktelLL 1010
Cdd:TIGR02168 460 EEALE-ELREELEEAEQALDAAERELAQLQArldslerlQENLEGFSEgvkALLKNQSGLSGILGVLSE---------LI 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1011 QKETEFQACLdqsrkEWTLQEaqRTQLEVHRYEEDILTVLDFL---------------LRDTQLEYDGDSQGKQLLEVMS 1075
Cdd:TIGR02168 530 SVDEGYEAAI-----EAALGG--RLQAVVVENLNAAKKAIAFLkqnelgrvtflpldsIKGTEIQGNDREILKNIEGFLG 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1076 VCSSkwtsvqyFEKVKACIHKALQDTLS--LLIDNIASEREKRNVVKTSADAVswnTGQGD----SGVPAPLPVST-SGP 1148
Cdd:TIGR02168 603 VAKD-------LVKFDPKLRKALSYLLGgvLVVDDLDNALELAKKLRPGYRIV---TLDGDlvrpGGVITGGSAKTnSSI 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1149 CAQSSALLEAEAETDKKIFEMKDLCcghcfQELEKEKQECQDLRRKLEKSRRHLQHLER----------THKATVEKLGE 1218
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELE-----KALAELRKELEELEEELEQLRKELEELSRqisalrkdlaRLEAEVEQLEE 747
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1219 ENSRVVEEL------IEENHDMKNKLETLRALCRTPPQSLSAGAAE-SARLLCSGQALEELRGQY--------------- 1276
Cdd:TIGR02168 748 RIAQLSKELteleaeIEELEERLEEAEEELAEAEAEIEELEAQIEQlKEELKALREALDELRAELtllneeaanlrerle 827
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1958766046 1277 -IKAVKKIKRDMLRYIQESKERATE-MVKAEVLRERQDTAR 1315
Cdd:TIGR02168 828 sLERRIAATERRLEDLEEQIEELSEdIESLAAEIEELEELI 868
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
639-1044 |
5.11e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 5.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 639 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTYQQHHEAMKAQI---RESLLAKHAAEKQHLSEVYE 715
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEE-KKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKK 1438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 716 GTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTME--KAQEQTSRQKLIQQLEEEWQSKLNHSLPARRKATS 793
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 794 DCGSQTDQAAYPAAMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRWILELP 871
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEkkKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 872 MLAEYKALLRAQQQEWAKQQEVavahrlslalsEAKEKWKSELQNMKPNVASVQELEEKihslQKELELKDEEVPVAVRA 951
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKI-----------KAEELKKAEEEKKKVEQLKKKEAEEK----KKAEELKKAEEENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 952 ELAKARNEWNKEKQEEIHKiqeqNEEDYRQFLEDHRNKINEvltaakedfvKQKTELLLQKETEFQACLDQSRKEWTLQE 1031
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKK----AEEDEKKAAEALKKEAEE----------AKKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
410
....*....|...
gi 1958766046 1032 AQRTQLEVHRYEE 1044
Cdd:PTZ00121 1730 IKAEEAKKEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
645-1259 |
1.80e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 645 KEAEEKLRSTNQ------DLCNQMRQMV------------------QEFDHDKQEAVDRcERTYQQHHEAMKAQIRESLL 700
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQLeplerqaekaeryrelkeELKELEAELLLLK-LRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 701 AKHAAEKQHlsEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQSK 780
Cdd:COG1196 254 ELEELEAEL--AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 781 LNHsLPARRKATsdcgsQTDQAAYpaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELkycESIAQKVETAVQ 860
Cdd:COG1196 332 LEE-LEEELEEL-----EEELEEA------EEELEEAEAELAEAEEALLEAEAELAEAEEELEEL---AEELLEALRAAA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 861 NARSRwiLELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELEL 940
Cdd:COG1196 397 ELAAQ--LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 941 KDEEVPVAVRAELAKARNEWnkekqeeihkIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACL 1020
Cdd:COG1196 475 LEAALAELLEELAEAAARLL----------LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1021 DQSRKEWTLQEAQRTQLEVHRYEEDILTVLDFLLRDTQLEYDGDSQGKQLLEVMSVCSskwtSVQYFEKVKACIHKALQD 1100
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD----LVASDLREADARYYVLGD 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1101 TLSLLIDNIASEREKRNVVKTSADAVSWNTGQGDSGVPAPLpvSTSGPCAQSSALLEAEAETDKKIFEmkdlccghcfQE 1180
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS--LTGGSRRELLAALLEAEAELEELAE----------RL 688
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958766046 1181 LEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTPPQSLSAGAAES 1259
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
624-905 |
7.63e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 7.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 624 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKH 703
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 704 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEvcrEKDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQSKLNh 783
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE---AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE- 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 784 slpARRKATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNAR 863
Cdd:COG1196 415 ---RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1958766046 864 SRWilelpMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSE 905
Cdd:COG1196 492 RLL-----LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
811-1312 |
1.42e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 811 AEALVLAEE--QAHQVQQEKELTVKEALRKSEvelELKYCESI-----AQKVETAVQNARSRWILELPMLAEYKALLRAQ 883
Cdd:PTZ00121 1094 EEAFGKAEEakKTETGKAEEARKAEEAKKKAE---DARKAEEArkaedARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 884 QQEWAKQQEVAvahRLSLALSEAKEKWKSElQNMKPNVASVQELEEKIHSLQKELELKdeevpvavRAELAKARNEWNKE 963
Cdd:PTZ00121 1171 KAEDAKKAEAA---RKAEEVRKAEELRKAE-DARKAEAARKAEEERKAEEARKAEDAK--------KAEAVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 964 KQEEIHKIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYE 1043
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1044 EdiltvldfllrdtqLEYDGDSQGKQLLEVmsvcSSKWTSVQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKTSA 1123
Cdd:PTZ00121 1319 E--------------AKKKAEEAKKKADAA----KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1124 DAVSWNTGQGDSGVPAPLPVSTSGPCAQSSALLEAEA----ETDKKIFEMKDLccghcfQELEK---EKQECQDLRRKLE 1196
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKkkadEAKKKAEEKKKA------DEAKKkaeEAKKADEAKKKAE 1454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1197 KSRRH---LQHLERTHKATVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTPPQSLSAGAAESARllcsgqALEELR 1273
Cdd:PTZ00121 1455 EAKKAeeaKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK------KADEAK 1528
|
490 500 510
....*....|....*....|....*....|....*....
gi 1958766046 1274 gqyiKAVKKIKRDMLRYIQEsKERATEMVKAEVLRERQD 1312
Cdd:PTZ00121 1529 ----KAEEAKKADEAKKAEE-KKKADELKKAEELKKAEE 1562
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
625-1043 |
1.67e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 625 EDILRLKNEVEVLQQQNQELKEAEEKLRStnqdLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMkAQIRESLLAKHA 704
Cdd:pfam12128 337 ADIETAAADQEQLPSWQSELENLEERLKA----LTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKL-AKIREARDRQLA 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 705 AEKQHlsevYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEEEwqsklnhs 784
Cdd:pfam12128 412 VAEDD----LQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREE-------- 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 785 LPARRKATSDcgSQTDQAAYPAAMPNA-EALVLAEEQAHQVQQEKEltvkealrksEVELELkycesiaqkvetavqnar 863
Cdd:pfam12128 480 QEAANAEVER--LQSELRQARKRRDQAsEALRQASRRLEERQSALD----------ELELQL------------------ 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 864 srwileLPMLAEYKALLRAQQQEW----AKQQEVAVAHRLSLALSEAKEKWKSELQ-----------NMKPNVASVQELE 928
Cdd:pfam12128 530 ------FPQAGTLLHFLRKEAPDWeqsiGKVISPELLHRTDLDPEVWDGSVGGELNlygvkldlkriDVPEWAASEEELR 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 929 EKIHSLQKELElKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQ--EQNEEDYRQFLEDHRN---KINEVLTAAKEDFVK 1003
Cdd:pfam12128 604 ERLDKAEEALQ-SAREKQAAAEEQLVQANGELEKASREETFARTalKNARLDLRRLFDEKQSekdKKNKALAERKDSANE 682
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1958766046 1004 QKTELLLQKETefqacLDQSRKEWTlqEAQRTQLEVHRYE 1043
Cdd:pfam12128 683 RLNSLEAQLKQ-----LDKKHQAWL--EEQKEQKREARTE 715
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
744-1331 |
3.83e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 744 REKDELESTLRKTMEKAQEQTSRQKLI-----QQLEEEWQSKLNHSLPARRKATSDCgsqtdqaaypaampnAEALVLAE 818
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLeelklQELKLKEQAKKALEYYQLKEKLELE---------------EEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 819 EQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVET--AVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVA 896
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQvlKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 897 HRLS-LALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEihkiQEQN 975
Cdd:pfam02463 311 DDEEkLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE----SERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 976 EEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEfqaclDQSRKEWTLQEAQRTQLEVHRYEEDILTVLDfllr 1055
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK-----EELEILEEEEESIELKQGKLTEEKEELEKQE---- 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1056 dtqleydgdsQGKQLLEVMSVCSSKWTsvQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKT----SADAVSWNTG 1131
Cdd:pfam02463 458 ----------LKLLKDELELKKSEDLL--KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVllalIKDGVGGRII 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1132 QGDSGVPAPLPVSTSGPCAQSSAllEAEAETDKKIFEMKDLCCGHCFQELEKEKQECQDLRRKLEKSRRHLQHLERTHKA 1211
Cdd:pfam02463 526 SAHGRLGDLGVAVENYKVAISTA--VIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPIL 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1212 TVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTppqslSAGAAESARLLCSGQALEELRGQYIKAVKKIKRDMLRYI 1291
Cdd:pfam02463 604 NLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE-----SAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEI 678
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1958766046 1292 QESKERATEMVKAEVLRERQDTARKMHKYYLSCLQQILED 1331
Cdd:pfam02463 679 QELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
236-939 |
6.64e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 6.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 236 KERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTK 315
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 316 KLRT-------TEITLESLKQQLVELH-HSESLQRAREQHESVVAGLTQKYEE-QVSCLQKNLDTTITALQEQVTwfpms 386
Cdd:TIGR02168 380 QLETlrskvaqLELQIASLNNEIERLEaRLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQE----- 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 387 ncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTEL---------INRLTRSLEDSQKQCAHLLQSGS----VH 453
Cdd:TIGR02168 455 ------------ELERLEEALEELREELEEAEQALDAAERELaqlqarldsLERLQENLEGFSEGVKALLKNQSglsgIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 454 EVTQLQLQLQQAQKAHI---LSESMNKALQEELTGLKEEISLYESAA-------ELGVLPG---DVEGDLSVELTESCVG 520
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIeaaLGGRLQAVVVENLNAAKKAIAFLKQNElgrvtflPLDSIKGteiQGNDREILKNIEGFLG 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 521 LGIKNVSWKQS-------------------KANSVAQQEPPNEKL-SKDEVILklkTQVQRLLSSNSMKRHLVSELQRDL 580
Cdd:TIGR02168 603 VAKDLVKFDPKlrkalsyllggvlvvddldNALELAKKLRPGYRIvTLDGDLV---RPGGVITGGSAKTNSSILERRREI 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 581 RDCRETMEALQqskdsdrgmetktetsekttnqlwldspeainrEDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCN 660
Cdd:TIGR02168 680 EELEEKIEELE---------------------------------EKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 661 QMRQMVQEFDHDKQEAVDRCERTYQQHHE-AMKAQIRESLLAKHAAEKQHLSEVyEGTQSQLRSDLDKLNKEVAAVQEcy 739
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKElTELEAEIEELEERLEEAEEELAEA-EAEIEELEAQIEQLKEELKALRE-- 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 740 levcrEKDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQsKLNHSLPARRKATSDcgsqtDQAAYpaampnaeALVLAEE 819
Cdd:TIGR02168 804 -----ALDELRAELTLLNEEAANLRERLESLERRIAATE-RRLEDLEEQIEELSE-----DIESL--------AAEIEEL 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 820 QAHQVQQEKELTVKEALRKSeVELELKYCESIAQKVETAVQNARSRwilelpMLAEYKALLRAQQQEWAKQQEVAVAH-R 898
Cdd:TIGR02168 865 EELIEELESELEALLNERAS-LEEALALLRSELEELSEELRELESK------RSELRRELEELREKLAQLELRLEGLEvR 937
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1958766046 899 LSLALSEAKEKWKSELQNMKPNVA----SVQELEEKIHSLQKELE 939
Cdd:TIGR02168 938 IDNLQERLSEEYSLTLEEAEALENkiedDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
625-1315 |
8.20e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 8.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 625 EDILR-LKNEVEVLQQQnqelKEAEEKLRstnqdlcnqmRQMVQEFDHDKQEAVDRCERtYQQHHEAMKAQIRE--SLLA 701
Cdd:TIGR02168 192 EDILNeLERQLKSLERQ----AEKAERYK----------ELKAELRELELALLVLRLEE-LREELEELQEELKEaeEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 702 KHAAEKQhlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQSKL 781
Cdd:TIGR02168 257 ELTAELQ----ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 782 NHSlparrkatsdcgsqtdqaaypaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELkycESIAQKVETAVQN 861
Cdd:TIGR02168 333 DEL--------------------------AEELAELEEKLEELKEELESLEAELEELEAELEEL---ESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 862 ARSRWILELpmlaEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELK 941
Cdd:TIGR02168 384 LRSKVAQLE----LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 942 DEEVPvAVRAELAKARNEWNKEKQEEIHKIQ--------EQNEEDYRQ---FLEDHRNKINEVLTAAKEdfvkqktelLL 1010
Cdd:TIGR02168 460 EEALE-ELREELEEAEQALDAAERELAQLQArldslerlQENLEGFSEgvkALLKNQSGLSGILGVLSE---------LI 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1011 QKETEFQACLdqsrkEWTLQEaqRTQLEVHRYEEDILTVLDFL---------------LRDTQLEYDGDSQGKQLLEVMS 1075
Cdd:TIGR02168 530 SVDEGYEAAI-----EAALGG--RLQAVVVENLNAAKKAIAFLkqnelgrvtflpldsIKGTEIQGNDREILKNIEGFLG 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1076 VCSSkwtsvqyFEKVKACIHKALQDTLS--LLIDNIASEREKRNVVKTSADAVswnTGQGD----SGVPAPLPVST-SGP 1148
Cdd:TIGR02168 603 VAKD-------LVKFDPKLRKALSYLLGgvLVVDDLDNALELAKKLRPGYRIV---TLDGDlvrpGGVITGGSAKTnSSI 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1149 CAQSSALLEAEAETDKKIFEMKDLCcghcfQELEKEKQECQDLRRKLEKSRRHLQHLER----------THKATVEKLGE 1218
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELE-----KALAELRKELEELEEELEQLRKELEELSRqisalrkdlaRLEAEVEQLEE 747
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1219 ENSRVVEEL------IEENHDMKNKLETLRALCRTPPQSLSAGAAE-SARLLCSGQALEELRGQY--------------- 1276
Cdd:TIGR02168 748 RIAQLSKELteleaeIEELEERLEEAEEELAEAEAEIEELEAQIEQlKEELKALREALDELRAELtllneeaanlrerle 827
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1958766046 1277 -IKAVKKIKRDMLRYIQESKERATE-MVKAEVLRERQDTAR 1315
Cdd:TIGR02168 828 sLERRIAATERRLEDLEEQIEELSEdIESLAAEIEELEELI 868
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
639-1044 |
5.11e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 5.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 639 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTYQQHHEAMKAQI---RESLLAKHAAEKQHLSEVYE 715
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEE-KKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKK 1438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 716 GTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTME--KAQEQTSRQKLIQQLEEEWQSKLNHSLPARRKATS 793
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 794 DCGSQTDQAAYPAAMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRWILELP 871
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEkkKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 872 MLAEYKALLRAQQQEWAKQQEVavahrlslalsEAKEKWKSELQNMKPNVASVQELEEKihslQKELELKDEEVPVAVRA 951
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKI-----------KAEELKKAEEEKKKVEQLKKKEAEEK----KKAEELKKAEEENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 952 ELAKARNEWNKEKQEEIHKiqeqNEEDYRQFLEDHRNKINEvltaakedfvKQKTELLLQKETEFQACLDQSRKEWTLQE 1031
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKK----AEEDEKKAAEALKKEAEE----------AKKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
410
....*....|...
gi 1958766046 1032 AQRTQLEVHRYEE 1044
Cdd:PTZ00121 1730 IKAEEAKKEAEED 1742
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
234-1046 |
1.47e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 234 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 314 TKKLRTTEITLESLKQQLVELhhSESLQRAREQHESV---VAGLTQKYEEQVScLQKNLDTTITALQEQVtwfpmsncqw 390
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDEL--AEELAELEEKLEELkeeLESLEAELEELEA-ELEELESRLEELEEQL---------- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 391 skvgyfvlseEDVCTRLKDHVQQLERNQEAVRLEKTELiNRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHI 470
Cdd:TIGR02168 382 ----------ETLRSKVAQLELQIASLNNEIERLEARL-ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 471 LSESMNKALQEELTGLKEEI-----SLYESAAELGVLPGDVEGDLSVELTESCVGLGIKNVSWKQSKANSVAQqePPNEK 545
Cdd:TIGR02168 451 ELQEELERLEEALEELREELeeaeqALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILG--VLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 546 LSKDEvilKLKTQVQRLLSSNSmkRHLVSElqrDLRDCRETMEALQQSKDSDRGMETktetsekttnqLWLDSPEAINRE 625
Cdd:TIGR02168 529 ISVDE---GYEAAIEAALGGRL--QAVVVE---NLNAAKKAIAFLKQNELGRVTFLP-----------LDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 626 DILRLKNEVEVLQQQNqELKEAEEKLRSTNQDLCNQMRqMVQEFDhdkqEAVDRCERTYQQHHEAMKA--QIRESLLAKH 703
Cdd:TIGR02168 590 DREILKNIEGFLGVAK-DLVKFDPKLRKALSYLLGGVL-VVDDLD----NALELAKKLRPGYRIVTLDgdLVRPGGVITG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 704 AAEKQHLSEVYegtqsqLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRktmEKAQEQTSRQKLIQQLEEEwQSKLNH 783
Cdd:TIGR02168 664 GSAKTNSSILE------RRREIEELEEKIEELEEKIAELEKALAELRKELE---ELEEELEQLRKELEELSRQ-ISALRK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 784 SLPARRKATSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQEKEltvKEALRKSEVELELKYCESIAQKVETAVQNAR 863
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQL--------SKELTELEAEIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 864 SRwILELPmlAEYKAL-LRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKD 942
Cdd:TIGR02168 803 EA-LDELR--AELTLLnEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 943 EEvpvavRAELAKARNEWNKEKQEEIHKIQEQNE-----EDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQ 1017
Cdd:TIGR02168 880 NE-----RASLEEALALLRSELEELSEELRELESkrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
810 820
....*....|....*....|....*....
gi 1958766046 1018 AclDQSRKEWTLQEAQRTQLEVHRYEEDI 1046
Cdd:TIGR02168 955 E--AEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
645-1259 |
1.80e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 645 KEAEEKLRSTNQ------DLCNQMRQMV------------------QEFDHDKQEAVDRcERTYQQHHEAMKAQIRESLL 700
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQLeplerqaekaeryrelkeELKELEAELLLLK-LRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 701 AKHAAEKQHlsEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQSK 780
Cdd:COG1196 254 ELEELEAEL--AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 781 LNHsLPARRKATsdcgsQTDQAAYpaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELkycESIAQKVETAVQ 860
Cdd:COG1196 332 LEE-LEEELEEL-----EEELEEA------EEELEEAEAELAEAEEALLEAEAELAEAEEELEEL---AEELLEALRAAA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 861 NARSRwiLELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELEL 940
Cdd:COG1196 397 ELAAQ--LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 941 KDEEVPVAVRAELAKARNEWnkekqeeihkIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACL 1020
Cdd:COG1196 475 LEAALAELLEELAEAAARLL----------LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1021 DQSRKEWTLQEAQRTQLEVHRYEEDILTVLDFLLRDTQLEYDGDSQGKQLLEVMSVCSskwtSVQYFEKVKACIHKALQD 1100
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD----LVASDLREADARYYVLGD 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1101 TLSLLIDNIASEREKRNVVKTSADAVSWNTGQGDSGVPAPLpvSTSGPCAQSSALLEAEAETDKKIFEmkdlccghcfQE 1180
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS--LTGGSRRELLAALLEAEAELEELAE----------RL 688
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958766046 1181 LEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTPPQSLSAGAAES 1259
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
631-1045 |
2.04e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 631 KNEVEVLQQQNQELKEAEEKLRSTNQDlcnqmRQMVQEFDhDKQEAVDRCERTYQQHHEAMKAQiresLLAKHAAEKQHL 710
Cdd:PTZ00121 1377 KKKADAAKKKAEEKKKADEAKKKAEED-----KKKADELK-KAAAAKKKADEAKKKAEEKKKAD----EAKKKAEEAKKA 1446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 711 SEVYEGTQSQLRSD-LDKLNKEVAAVQECY--LEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEE----EWQSKLNH 783
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEeAKKKAEEAKKADEAKkkAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEakkaEEAKKADE 1526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 784 SLPARRKATSDCGSQTDQAAYPAAMPNAEALVLAEE-----QAHQVQQEKELTVKEA--LRKSE----VELELKYCESIA 852
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEkkkaeEAKKAEEDKNMALRKAeeAKKAEeariEEVMKLYEEEKK 1606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 853 QKVETAVQNARSRWILELPMLAE-----YKALLRAQQQEWAKQQEVAVAHRLSlALSEAKEKWKSELQNMKPNVASVQEL 927
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEeekkkVEQLKKKEAEEKKKAEELKKAEEEN-KIKAAEEAKKAEEDKKKAEEAKKAEE 1685
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 928 EEKihSLQKELELKDEEvpvAVRAELAKARNEWNKEKQEEIHKIQEQNE---EDYRQFLEDHRNKINEvltAAKEDFVKQ 1004
Cdd:PTZ00121 1686 DEK--KAAEALKKEAEE---AKKAEELKKKEAEEKKKAEELKKAEEENKikaEEAKKEAEEDKKKAEE---AKKDEEEKK 1757
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1958766046 1005 KTElLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 1045
Cdd:PTZ00121 1758 KIA-HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
624-905 |
7.63e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 7.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 624 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKH 703
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 704 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEvcrEKDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQSKLNh 783
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE---AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE- 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 784 slpARRKATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNAR 863
Cdd:COG1196 415 ---RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1958766046 864 SRWilelpMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSE 905
Cdd:COG1196 492 RLL-----LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
623-1242 |
2.70e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 623 NREDILRLKNEVEVLQQQNQELKEAEEKLRStnqDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAqirESLLAK 702
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKA---DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA---DEAKKK 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 703 HAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQEcyLEVCREKDELEStLRKTMEKAQEQTSRQKLIQQLEEEwqskln 782
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE--AEAAEEKAEAAE-KKKEEAKKKADAAKKKAEEKKKAD------ 1394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 783 hslPARRKATSDCGSQTDQAAYPAAMPNAEAlvlAEEQAHQVQQEKELTVK-EALRKSEvelELKYCESIAQKVETAVQN 861
Cdd:PTZ00121 1395 ---EAKKKAEEDKKKADELKKAAAAKKKADE---AKKKAEEKKKADEAKKKaEEAKKAD---EAKKKAEEAKKAEEAKKK 1465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 862 ARSRWILElpmLAEYKALLRAQQQEWAKQQEVAVahrlslalSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELK 941
Cdd:PTZ00121 1466 AEEAKKAD---EAKKKAEEAKKADEAKKKAEEAK--------KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 942 DEEvpVAVRAELAKARNEWnkEKQEEIHKIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLD 1021
Cdd:PTZ00121 1535 KAD--EAKKAEEKKKADEL--KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1022 QSRKEwtlqEAQRTQLEVHRYEEDILTVLDFLLRDTQLEYDGDSQGKQLLEVMSVCSSKWTSVQYFEKVKA-CIHKALQD 1100
Cdd:PTZ00121 1611 EAKKA----EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAeEAKKAEED 1686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1101 TLSLLIDNIASEREKR---NVVKTSADAVSwntgqgdsgvpaplpvstsgpcaQSSALLEAEAETDKKIFEMKdlccghc 1177
Cdd:PTZ00121 1687 EKKAAEALKKEAEEAKkaeELKKKEAEEKK-----------------------KAEELKKAEEENKIKAEEAK------- 1736
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958766046 1178 fQELEKEKQECQDLRRKlEKSRRHLQHLERTHKATVEKLGEENSRVVEELIEENhDMKNKLETLR 1242
Cdd:PTZ00121 1737 -KEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE-DEKRRMEVDK 1798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
234-499 |
1.21e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 234 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 314 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQvtwfpmsncqwsk 392
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEElEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL------------- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 393 vgyfvLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLtRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILS 472
Cdd:COG1196 389 -----LEALRAAAELAAQLEELEEAEEALLERLERLEEEL-EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260
....*....|....*....|....*..
gi 1958766046 473 ESMNKALQEELTGLKEEISLYESAAEL 499
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEA 489
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
746-1044 |
3.58e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 746 KDELESTLRKTMEKAQ-----EQTSRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAmpNAEALVLAEE- 819
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEdarkaEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK--KAEAARKAEEv 1187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 820 -QAHQVQQEKELTVKEALRKSEVEL---------------ELKYCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQ 883
Cdd:PTZ00121 1188 rKAEELRKAEDARKAEAARKAEEERkaeearkaedakkaeAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFAR 1267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 884 QQEWAKQQEVavahRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKE 963
Cdd:PTZ00121 1268 RQAAIKAEEA----RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 964 KQE-----------EIHKIQEQNEEDYRQfLEDHRNKINEVLTAAKE----DFVKQKTELLLQKETEFQACLDQSRKEwt 1028
Cdd:PTZ00121 1344 AAEaakaeaeaaadEAEAAEEKAEAAEKK-KEEAKKKADAAKKKAEEkkkaDEAKKKAEEDKKKADELKKAAAAKKKA-- 1420
|
330
....*....|....*.
gi 1958766046 1029 lQEAQRTQLEVHRYEE 1044
Cdd:PTZ00121 1421 -DEAKKKAEEKKKADE 1435
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
206-776 |
7.53e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 206 EGLQQQFLGANETDSAENIHIIQLQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSG 285
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 286 KEREMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTQKYEEQVSCL 365
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA--EEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 366 QK--NLDTTITALQEQVTwfpmsncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQC 443
Cdd:COG1196 393 RAaaELAAQLEELEEAEE-----------------ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 444 AHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALQEELtgLKEEISLYESAAE-----------------LGVLPGD- 505
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL--LLEAEADYEGFLEgvkaalllaglrglagaVAVLIGVe 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 506 --VEGDLSVELTESCVGLGIKNVS--------WKQSKA-------NSVAQQEPPNEKLSKDEVILKLKTQVQRLLSSNSM 568
Cdd:COG1196 534 aaYEAALEAALAAALQNIVVEDDEvaaaaieyLKAAKAgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 569 KRHLVSE--LQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKE 646
Cdd:COG1196 614 RYYVLGDtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 647 AEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEgtqSQLRSDLD 726
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL---EELERELE 770
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958766046 727 KLNKEV--------AAVQEcYLEVCREKDELeSTLRKTMEKAQEQTsrQKLIQQLEEE 776
Cdd:COG1196 771 RLEREIealgpvnlLAIEE-YEELEERYDFL-SEQREDLEEARETL--EEAIEEIDRE 824
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
205-778 |
7.64e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 7.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 205 FEGLQQQFLGANETDSAENIHIIQLQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLresQKLFQS 284
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR---ERLQQE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 285 GKEREMQL-EAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLT--QKYEEQ 361
Cdd:TIGR02168 423 IEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA--EQALDAAERELAQLQARLDslERLQEN 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 362 VSCLQKNLdttITALQEQVTWFPMSNCQWSKV----GYfvlsEEDVCTRLKDHVQQLE-RNQEAVRLE----KTELINRL 432
Cdd:TIGR02168 501 LEGFSEGV---KALLKNQSGLSGILGVLSELIsvdeGY----EAAIEAALGGRLQAVVvENLNAAKKAiaflKQNELGRV 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 433 T----RSLEDSQKQCAHLLQSGSVHE-VTQLQLQLQQAQKAHILSESM--NKALQEELTGLKEEISLYESAAELGVLPGD 505
Cdd:TIGR02168 574 TflplDSIKGTEIQGNDREILKNIEGfLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNALELAKKLRPGYRIVTLDGD 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 506 V--------EGDLSVELTESCVGLGIKNVSwkqskaNSVAQQEPPNEKLSKdeVILKLKTQVQRLLSSNSMKRHLVSELQ 577
Cdd:TIGR02168 654 LvrpggvitGGSAKTNSSILERRREIEELE------EKIEELEEKIAELEK--ALAELRKELEELEEELEQLRKELEELS 725
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 578 RDLRDCRETMEALQQS--KDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRSTN 655
Cdd:TIGR02168 726 RQISALRKDLARLEAEveQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 656 QDLCNQMRQMVQEFdHDKQEAVDRCER----------TYQQHHEAMKAQIR---------ESLLAKHAAEKQHLSEVYEG 716
Cdd:TIGR02168 806 DELRAELTLLNEEA-ANLRERLESLERriaaterrleDLEEQIEELSEDIEslaaeieelEELIEELESELEALLNERAS 884
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958766046 717 TQ---SQLRSDLDKLNKEVAAVQECYLEVCREKDELE---STLRKTMEKAQEQtsRQKLIQQLEEEWQ 778
Cdd:TIGR02168 885 LEealALLRSELEELSEELRELESKRSELRRELEELReklAQLELRLEGLEVR--IDNLQERLSEEYS 950
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
315-1015 |
1.35e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 315 KKLRTTEITLESLKQQLVELHHSESLQRAREQHESVVAGLTQKYEEQVSCLQKNLD------TTITALQEQVTWFPMSNC 388
Cdd:TIGR00606 200 QKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKeiehnlSKIMKLDNEIKALKSRKK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 389 QWSKV-GYFVLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQ-LQQAQ 466
Cdd:TIGR00606 280 QMEKDnSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQlQADRH 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 467 KAHIL---SESMNKALQEELTGLKEeislyesaaelgvlpgdveGDLSVELTESCVGLGIKNVSWKQSKANSVAQQEPPN 543
Cdd:TIGR00606 360 QEHIRardSLIQSLATRLELDGFER-------------------GPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSK 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 544 EKLsKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAIN 623
Cdd:TIGR00606 421 ERL-KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETL 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 624 REDILRLKNE-VEVLQQQNQELKEAEEKLRSTnqdlcnQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQ-------- 694
Cdd:TIGR00606 500 KKEVKSLQNEkADLDRKLRKLDQEMEQLNHHT------TTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnkk 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 695 IRESLLAKHAAEKQHLSE----------VYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELE--STLRKTMEKAQE 762
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRDrlaklnkelaSLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESdlERLKEEIEKSSK 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 763 QTSR--------QKLIQQLEEEWQS----------------KLNHSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLAE 818
Cdd:TIGR00606 654 QRAMlagatavySQFITQLTDENQSccpvcqrvfqteaelqEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAP 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 819 EQAHQVQ-QEKEL-TVKEALR---------KSEVELELKYCESIAQKVETAVQNARSRWILElPMLAEYKALLRAQQQEW 887
Cdd:TIGR00606 734 GRQSIIDlKEKEIpELRNKLQkvnrdiqrlKNDIEEQETLLGTIMPEEESAKVCLTDVTIME-RFQMELKDVERKIAQQA 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 888 AKQQEVAVA---HRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKEL-ELKDEEVPVAVRAELAKARNEWNKE 963
Cdd:TIGR00606 813 AKLQGSDLDrtvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTnELKSEKLQIGTNLQRRQQFEEQLVE 892
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 1958766046 964 KQEEIhkiQEQNEEdyrqfLEDHRNKINEvLTAAKEDFVKQKTELLLQKETE 1015
Cdd:TIGR00606 893 LSTEV---QSLIRE-----IKDAKEQDSP-LETFLEKDQQEKEELISSKETS 935
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
811-1312 |
1.42e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 811 AEALVLAEE--QAHQVQQEKELTVKEALRKSEvelELKYCESI-----AQKVETAVQNARSRWILELPMLAEYKALLRAQ 883
Cdd:PTZ00121 1094 EEAFGKAEEakKTETGKAEEARKAEEAKKKAE---DARKAEEArkaedARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 884 QQEWAKQQEVAvahRLSLALSEAKEKWKSElQNMKPNVASVQELEEKIHSLQKELELKdeevpvavRAELAKARNEWNKE 963
Cdd:PTZ00121 1171 KAEDAKKAEAA---RKAEEVRKAEELRKAE-DARKAEAARKAEEERKAEEARKAEDAK--------KAEAVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 964 KQEEIHKIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYE 1043
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1044 EdiltvldfllrdtqLEYDGDSQGKQLLEVmsvcSSKWTSVQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKTSA 1123
Cdd:PTZ00121 1319 E--------------AKKKAEEAKKKADAA----KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1124 DAVSWNTGQGDSGVPAPLPVSTSGPCAQSSALLEAEA----ETDKKIFEMKDLccghcfQELEK---EKQECQDLRRKLE 1196
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKkkadEAKKKAEEKKKA------DEAKKkaeEAKKADEAKKKAE 1454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1197 KSRRH---LQHLERTHKATVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTPPQSLSAGAAESARllcsgqALEELR 1273
Cdd:PTZ00121 1455 EAKKAeeaKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK------KADEAK 1528
|
490 500 510
....*....|....*....|....*....|....*....
gi 1958766046 1274 gqyiKAVKKIKRDMLRYIQEsKERATEMVKAEVLRERQD 1312
Cdd:PTZ00121 1529 ----KAEEAKKADEAKKAEE-KKKADELKKAEELKKAEE 1562
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
625-1043 |
1.67e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 625 EDILRLKNEVEVLQQQNQELKEAEEKLRStnqdLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMkAQIRESLLAKHA 704
Cdd:pfam12128 337 ADIETAAADQEQLPSWQSELENLEERLKA----LTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKL-AKIREARDRQLA 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 705 AEKQHlsevYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEEEwqsklnhs 784
Cdd:pfam12128 412 VAEDD----LQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREE-------- 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 785 LPARRKATSDcgSQTDQAAYPAAMPNA-EALVLAEEQAHQVQQEKEltvkealrksEVELELkycesiaqkvetavqnar 863
Cdd:pfam12128 480 QEAANAEVER--LQSELRQARKRRDQAsEALRQASRRLEERQSALD----------ELELQL------------------ 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 864 srwileLPMLAEYKALLRAQQQEW----AKQQEVAVAHRLSLALSEAKEKWKSELQ-----------NMKPNVASVQELE 928
Cdd:pfam12128 530 ------FPQAGTLLHFLRKEAPDWeqsiGKVISPELLHRTDLDPEVWDGSVGGELNlygvkldlkriDVPEWAASEEELR 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 929 EKIHSLQKELElKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQ--EQNEEDYRQFLEDHRN---KINEVLTAAKEDFVK 1003
Cdd:pfam12128 604 ERLDKAEEALQ-SAREKQAAAEEQLVQANGELEKASREETFARTalKNARLDLRRLFDEKQSekdKKNKALAERKDSANE 682
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1958766046 1004 QKTELLLQKETefqacLDQSRKEWTlqEAQRTQLEVHRYE 1043
Cdd:pfam12128 683 RLNSLEAQLKQ-----LDKKHQAWL--EEQKEQKREARTE 715
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
572-1243 |
2.25e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 572 LVSELQRDLRDCRETMEALQQSKDSdrgmetKTETSEKTTNQLWLDSPE-AINREDILRLKNEVEVLQQQNQELKEAEEK 650
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEE------LEAQLEELESKLDELAEElAELEEKLEELKEELESLEAELEELEAELEE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 651 LRSTNQDLCNQMRQMVQE-FDHDKQEAVDRCERTY--------QQHHEAMKAQIRESLLAKHAAEKQHLSEvyegTQSQL 721
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKvAQLELQIASLNNEIERlearlerlEDRRERLQQEIEELLKKLEEAELKELQA----ELEEL 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 722 RSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQ 801
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN-LEGFSEGVKALLKNQSGLSGILGV 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 802 AAypaampnaealvlaeeQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRW-ILELPMLAEYKalL 880
Cdd:TIGR02168 525 LS----------------ELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVtFLPLDSIKGTE--I 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 881 RAQQQEWAKQQE--------------------------VAVAHRLSLALSEAKEKWKSEL-------------------- 914
Cdd:TIGR02168 587 QGNDREILKNIEgflgvakdlvkfdpklrkalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsa 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 915 ----------QNMKPNVASVQELEEKIHSLQKEL-------ELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEE 977
Cdd:TIGR02168 667 ktnssilerrREIEELEEKIEELEEKIAELEKALaelrkelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 978 DYRQFLEDHRNKINEVLTAAKEDFVKQKTEL--LLQKETEFQACLDQSRKEWTLQEAQRTQLevhryeEDILTVLDFLLR 1055
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELaeAEAEIEELEAQIEQLKEELKALREALDEL------RAELTLLNEEAA 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1056 DTQLEYDGDSQGKQLLEVMSVCSSKwtsvqyfekvkacIHKALQDTLSLLIDNIASEREKRNVVKTSADAVSwntgqgds 1135
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEE-------------QIEELSEDIESLAAEIEELEELIEELESELEALL-------- 879
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1136 gvpaplpVSTSGPCAQSSALLEAEAETDKKIFEMKdlccghcfQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEK 1215
Cdd:TIGR02168 880 -------NERASLEEALALLRSELEELSEELRELE--------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
730 740
....*....|....*....|....*...
gi 1958766046 1216 LGEENSRVVEELIEENHDMKNKLETLRA 1243
Cdd:TIGR02168 945 LSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
228-343 |
3.55e-04 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 45.39 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 228 QLQVLNKAKERQLDSLVEKLND----RERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKeremqleaQIHALETqi 303
Cdd:pfam09798 5 KLELLQQEKEKELEKLKNSYEElkssHEEELEKLKQEVQKLEDEKKFLLNELRSLSATSPASS--------QSHETDT-- 74
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1958766046 304 eafKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRA 343
Cdd:pfam09798 75 ---DDSSSVSLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
744-1331 |
3.83e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 744 REKDELESTLRKTMEKAQEQTSRQKLI-----QQLEEEWQSKLNHSLPARRKATSDCgsqtdqaaypaampnAEALVLAE 818
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLeelklQELKLKEQAKKALEYYQLKEKLELE---------------EEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 819 EQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVET--AVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVA 896
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQvlKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 897 HRLS-LALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEihkiQEQN 975
Cdd:pfam02463 311 DDEEkLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE----SERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 976 EEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEfqaclDQSRKEWTLQEAQRTQLEVHRYEEDILTVLDfllr 1055
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK-----EELEILEEEEESIELKQGKLTEEKEELEKQE---- 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1056 dtqleydgdsQGKQLLEVMSVCSSKWTsvQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKT----SADAVSWNTG 1131
Cdd:pfam02463 458 ----------LKLLKDELELKKSEDLL--KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVllalIKDGVGGRII 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1132 QGDSGVPAPLPVSTSGPCAQSSAllEAEAETDKKIFEMKDLCCGHCFQELEKEKQECQDLRRKLEKSRRHLQHLERTHKA 1211
Cdd:pfam02463 526 SAHGRLGDLGVAVENYKVAISTA--VIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPIL 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1212 TVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTppqslSAGAAESARLLCSGQALEELRGQYIKAVKKIKRDMLRYI 1291
Cdd:pfam02463 604 NLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE-----SAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEI 678
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1958766046 1292 QESKERATEMVKAEVLRERQDTARKMHKYYLSCLQQILED 1331
Cdd:pfam02463 679 QELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
234-499 |
7.45e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 7.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 234 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 314 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKY---EEQVSCLQKNLDTTITALQEQVTwfpmsncq 389
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEElAELEEELEELEEELEELEEELeeaEEELEEAEAELAEAEEALLEAEA-------- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 390 wskvgyfvlSEEDVCTRLKDHVQQLERNQEAvRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAH 469
Cdd:COG1196 373 ---------ELAEAEEELEELAEELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270
....*....|....*....|....*....|
gi 1958766046 470 ILSESMNKALQEELTGLKEEISLYESAAEL 499
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
754-1045 |
1.44e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 754 RKTMEKAQEQTSRQKLIQQ-LEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLAEE-QAHQVQQEKELT 831
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQErLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERErELERIRQEERKR 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 832 VKEALRKSEVELELKYCESIAQ-KVETAVQNARSRWILELpmlAEYKALLRAQQQEWAKQQEVAVaHRLSLALSEAKEKW 910
Cdd:pfam17380 361 ELERIRQEEIAMEISRMRELERlQMERQQKNERVRQELEA---ARKVKILEEERQRKIQQQKVEM-EQIRAEQEEARQRE 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 911 KSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEwNKEKQEEIHKIQEQN-EEDYRQFLEDHRNK 989
Cdd:pfam17380 437 VRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRD-RKRAEEQRRKILEKElEERKQAMIEEERKR 515
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958766046 990 inEVLTAAKEDFVKQKTELLLQKETEfqaclDQSRKEWTLQEAQRTQLEVHRYEED 1045
Cdd:pfam17380 516 --KLLEKEMEERQKAIYEEERRREAE-----EERRKQQEMEERRRIQEQMRKATEE 564
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
235-379 |
1.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 235 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRE-SQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 313
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958766046 314 TKKLRTTEITLESLKQQLVELHhsESLQRAREQHESVVAGLTQKYEEqvsclqknLDTTITALQEQ 379
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE--------AEAALRDLRRE 420
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1154-1341 |
1.67e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1154 ALLEAEAETDKKIFEMKDlccghcfqELEKEKQEC-QDLRRKleksRRHLQHLERT---HKATVEKLGEENSRVVEELIE 1229
Cdd:PRK12704 47 AKKEAEAIKKEALLEAKE--------EIHKLRNEFeKELRER----RNELQKLEKRllqKEENLDRKLELLEKREEELEK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1230 ENHDMKNKLETLralcrtppqslsagaaesarllcsgqalEELRGQYIKAVKKIKRDMLRYIQESKERATEMVKAEVLRE 1309
Cdd:PRK12704 115 KEKELEQKQQEL----------------------------EKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEE 166
|
170 180 190
....*....|....*....|....*....|...
gi 1958766046 1310 -RQDTARKMHKYylsclqqilEDNGKEEgAEKK 1341
Cdd:PRK12704 167 aRHEAAVLIKEI---------EEEAKEE-ADKK 189
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
532-652 |
1.69e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 532 KANSVAQQEPPNEKLSKDEVILKLKTQVQRLlssnsmkRHLVSELQRDLRDCRETMEALQQSKDSDRgmetktetseKTT 611
Cdd:COG2433 395 PEAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEEKDERIERLERELSEAR----------SEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958766046 612 NQLWLDSPEAINRE-DILRLKNEVEVLQQQNQELKEAEEKLR 652
Cdd:COG2433 458 RREIRKDREISRLDrEIERLERELEEERERIEELKRKLERLK 499
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
237-346 |
1.78e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 41.73 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 237 ERQLDSLVEKLNDRERQIRylnhqlLIVQDEKDGLALSLresqklfqsgKEREMQLEAQIHALETQIEAFKVSEEKLTKK 316
Cdd:COG1842 57 ERQLEELEAEAEKWEEKAR------LALEKGREDLAREA----------LERKAELEAQAEALEAQLAQLEEQVEKLKEA 120
|
90 100 110
....*....|....*....|....*....|
gi 1958766046 317 LRTTEITLESLKQQLVELHHSESLQRAREQ 346
Cdd:COG1842 121 LRQLESKLEELKAKKDTLKARAKAAKAQEK 150
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
235-449 |
2.64e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 235 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLT 314
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 315 KKLRTTEitlESLKQQLVELH------------HSESLQRArEQHESVVAGLTQKYEEQVSCLQKNLDtTITALQEQVTw 382
Cdd:COG4942 97 AELEAQK---EELAELLRALYrlgrqpplalllSPEDFLDA-VRRLQYLKYLAPARREQAEELRADLA-ELAALRAELE- 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766046 383 fpmsncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQS 449
Cdd:COG4942 171 ----------------AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
276-769 |
3.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 276 RESQKLF-QSGKEREMQLEaQIHALETQIEAFKVSEE---KLTKKLRTTEITLESLKQQLVEL-HHSESLQRA------- 343
Cdd:COG4717 53 KEADELFkPQGRKPELNLK-ELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELrEELEKLEKLlqllply 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 344 --REQHESVVAGLTQKYEEQVSCLQ--KNLDTTITALQEQVTwfpmsNCQWSKVGYFVLSEEDVCTRLKDHVQQLERNQE 419
Cdd:COG4717 132 qeLEALEAELAELPERLEELEERLEelRELEEELEELEAELA-----ELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 420 AVRLEKTELiNRLTRSLEDSQKQCAHLlqsgsvhevtqlqlqlqqaqkahilseSMNKALQEELTGLKEEISLYESAAEL 499
Cdd:COG4717 207 RLAELEEEL-EEAQEELEELEEELEQL---------------------------ENELEAAALEERLKEARLLLLIAAAL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 500 GVLPGDVEGDLSVELTE-----SCVGLGIKNVSWKQSKANSVAQQEPPNEKLSKDEVI--LKLKTQVQRLLSSNSMKRHL 572
Cdd:COG4717 259 LALLGLGGSLLSLILTIagvlfLVLGLLALLFLLLAREKASLGKEAEELQALPALEELeeEELEELLAALGLPPDLSPEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 573 VSELQRDLRDCRETMEALQQSKDSdrgmeTKTETSEKTTNQLwLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLR 652
Cdd:COG4717 339 LLELLDRIEELQELLREAEELEEE-----LQLEELEQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 653 STNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEV 732
Cdd:COG4717 413 ELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEW 492
|
490 500 510
....*....|....*....|....*....|....*..
gi 1958766046 733 AAVQecylevcrekdelesTLRKTMEKAQEQTSRQKL 769
Cdd:COG4717 493 AALK---------------LALELLEEAREEYREERL 514
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
200-379 |
3.22e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 200 AGSDMFEGLQQQFLGANETDSAENIHIIQLQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQ 279
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 280 K---------------LFQSGKE-----------------REMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESL 327
Cdd:COG4942 97 AeleaqkeelaellraLYRLGRQpplalllspedfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958766046 328 KQQLVEL-HHSESLQRAREQHESVVAGLTQK---YEEQVSCLQKN---LDTTITALQEQ 379
Cdd:COG4942 177 EALLAELeEERAALEALKAERQKLLARLEKElaeLAAELAELQQEaeeLEALIARLEAE 235
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
642-1046 |
4.34e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 642 QELKEAEEKLRstnqdlcnQMRQMVQEFdHDKQEAVDRCERTYQQhheamkAQIRESLLAKHAAEKQHLSEVYEgtqsqL 721
Cdd:COG4717 71 KELKELEEELK--------EAEEKEEEY-AELQEELEELEEELEE------LEAELEELREELEKLEKLLQLLP-----L 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 722 RSDLDKLNKEVAAVQECYlevcrekDELESTLRKTMEKAQEQTSRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQ 801
Cdd:COG4717 131 YQELEALEAELAELPERL-------EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 802 AaypaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNA--------------RSRWI 867
Cdd:COG4717 204 L--------QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAallallglggsllsLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 868 LEL------PMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQ-NMKPNVASVQELEEKIHSLQKELEL 940
Cdd:COG4717 276 AGVlflvlgLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 941 KDEEvpvavRAELAKARNEwnKEKQEEIHKIQEQNEEDYRQFLEDHRNKINevltaaKEDFVKQKTELLLQKETEFQACL 1020
Cdd:COG4717 356 AEEL-----EEELQLEELE--QEIAALLAEAGVEDEEELRAALEQAEEYQE------LKEELEELEEQLEELLGELEELL 422
|
410 420
....*....|....*....|....*.
gi 1958766046 1021 DQSRKEWTLQEAQRTQLEVHRYEEDI 1046
Cdd:COG4717 423 EALDEEELEEELEELEEELEELEEEL 448
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
198-591 |
4.46e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 198 EIAGSDMFEGLQQQFLGANETDSaENIHIIQLQVlnKAKERQLDSLVEklnDRERQIRYLnhqllIVQDEKDGLALSLRE 277
Cdd:TIGR02169 161 EIAGVAEFDRKKEKALEELEEVE-ENIERLDLII--DEKRQQLERLRR---EREKAERYQ-----ALLKEKREYEGYELL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 278 SQKlfQSGKEREMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRAREQHEsvvagltqk 357
Cdd:TIGR02169 230 KEK--EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE--------- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 358 yeeqVSCLQKNLDTTITALQEQvtwfpMSNCQWSKVGYFVLSEedvctRLKDHVQQLERNQEAVRLEKTELINRLtrsle 437
Cdd:TIGR02169 299 ----LEAEIASLERSIAEKERE-----LEDAEERLAKLEAEID-----KLLAEIEELEREIEEERKRRDKLTEEY----- 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 438 DSQKQCAHLLQSgsvhevtqlqlQLQQAQKAHILSESMNKALQEELTGLKEEIslYESAAELGVLpgdveGDLSVELTES 517
Cdd:TIGR02169 360 AELKEELEDLRA-----------ELEEVDKEFAETRDELKDYREKLEKLKREI--NELKRELDRL-----QEELQRLSEE 421
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958766046 518 cvGLGIKNvswkqskANSVAQQEPPNEKLSKDEVILKLKTQVQRLLSSNSMKrhlvSELQRDLRDCRETMEALQ 591
Cdd:TIGR02169 422 --LADLNA-------AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL----SKYEQELYDLKEEYDRVE 482
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
636-994 |
4.59e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 636 VLQQQNQE-LKEAEEKLRSTNQDLcNQMRQMVQEFDhDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQhlsevy 714
Cdd:COG4913 603 VLGFDNRAkLAALEAELAELEEEL-AEAEERLEALE-AELDALQERREALQRLAEYSWDEIDVASAEREIAELE------ 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 715 egtqsQLRSDLDKLNKEVAAVQECYLEVCREKDELEstlrktmekaQEQTSRQKLIQQLEEEWQSklnhslparrkatsd 794
Cdd:COG4913 675 -----AELERLDASSDDLAALEEQLEELEAELEELE----------EELDELKGEIGRLEKELEQ--------------- 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 795 cgsqtdqaaypaampnaealvlAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNArsrwilelpmla 874
Cdd:COG4913 725 ----------------------AEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN------------ 770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 875 eykalLRAQQQEWAKQQEVAvAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHslqkelELKDEEVPvAVRAELA 954
Cdd:COG4913 771 -----LEERIDALRARLNRA-EEELERAMRAFNREWPAETADLDADLESLPEYLALLD------RLEEDGLP-EYEERFK 837
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958766046 955 KARNEWNKEKQEEI-HKIQEQNEEDYRQFledhrNKINEVL 994
Cdd:COG4913 838 ELLNENSIEFVADLlSKLRRAIREIKERI-----DPLNDSL 873
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
229-776 |
4.89e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 229 LQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEremqleaQIHALETQIEAFKV 308
Cdd:TIGR04523 59 LDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE-------QKNKLEVELNKLEK 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 309 SEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTqKYEEQVSCLQKNLDTtiTALQEQVTWFPMSNC 388
Cdd:TIGR04523 132 QKKENKKNIDKFLTEIKKKEKELEKL--NNKYNDLKKQKEELENELN-LLEKEKLNIQKNIDK--IKNKLLKLELLLSNL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 389 QWSKVGYFVLSEEdvCTRLKDHVQQLERNQEavrlEKTELINRLTRSLEDSQKQCAHLLQSgSVHEVTQLQLQLQQAQKA 468
Cdd:TIGR04523 207 KKKIQKNKSLESQ--ISELKKQNNQLKDNIE----KKQQEINEKTTEISNTQTQLNQLKDE-QNKIKKQLSEKQKELEQN 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 469 HILSESMNKALQEeltgLKEEISlyesaaelgVLPGDVEGDLSVELTEScvglgIKNVswKQSKANSVAQQEPPNEKLSK 548
Cdd:TIGR04523 280 NKKIKELEKQLNQ----LKSEIS---------DLNNQKEQDWNKELKSE-----LKNQ--EKKLEEIQNQISQNNKIISQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 549 -DEVILKLKTQVQRLLSSNsmkrhlvSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLwLDSPEAINREdi 627
Cdd:TIGR04523 340 lNEQISQLKKELTNSESEN-------SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK-IQNQEKLNQQ-- 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 628 lrLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTyqqhHEAMKAQIresllakhaaek 707
Cdd:TIGR04523 410 --KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNT----RESLETQL------------ 470
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958766046 708 qhlsEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELEstlRKTMEKAQEQTSRQKLIQQLEEE 776
Cdd:TIGR04523 471 ----KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELE---EKVKDLTKKISSLKEKIEKLESE 532
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
627-948 |
5.11e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 627 ILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQM--RQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHA 704
Cdd:pfam17380 277 IVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 705 AEKQHLSEV--------------YEGTQSQLRSDLDKLNKEV-AAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKL 769
Cdd:pfam17380 357 ERKRELERIrqeeiameisrmreLERLQMERQQKNERVRQELeAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 770 IQQLEEEWQSKLNHSlparRKATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQEKEltvkealRKSEVELELKyce 849
Cdd:pfam17380 437 VRRLEEERAREMERV----RLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQ-------RRKILEKELE--- 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 850 siaQKVETAVQNARSRWILELPMLAEYKALLRAQQ-----QEWAKQQEVAVAHRLSLALSEAKEKwKSELQNMkpnvasv 924
Cdd:pfam17380 503 ---ERKQAMIEEERKRKLLEKEMEERQKAIYEEERrreaeEERRKQQEMEERRRIQEQMRKATEE-RSRLEAM------- 571
|
330 340
....*....|....*....|....
gi 1958766046 925 qELEEKIHSLQKELELKDEEVPVA 948
Cdd:pfam17380 572 -EREREMMRQIVESEKARAEYEAT 594
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
543-1345 |
5.38e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 543 NEKLSKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDspeai 622
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERID----- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 623 NREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFD--HDKQEAVDRCERT---YQQHHEAMKAQIRE 697
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELklLAKEEEELKSELLkleRRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 698 SLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTSRQKLIQQLEEEW 777
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 778 QSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQEKELtVKEALRKSEVELELKYCESIAQKVET 857
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEEL-EKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 858 AVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKE 937
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADE 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 938 LELKDEEVPVAVRAELAKARNEWNKEKQEEI---HKIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKET 1014
Cdd:pfam02463 560 VEERQKLVRALTELPLGARKLRLLIPKLKLPlksIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1015 EFQACLDQSRKEWTLQEAQRTQLEVHRYEEDILTVLDFLLRDTQLEYDGDSQGKQLLEVMSVCSSKWTSVQYFEKVKACI 1094
Cdd:pfam02463 640 SAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEA 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1095 HKALQDTLSLLIDNIASEREKRNVVKTSADAVSWNTGQGDSGVPAPLPvstsgpcAQSSALLEAEAETDKKIFEMKDLCC 1174
Cdd:pfam02463 720 EELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS-------ELSLKEKELAEEREKTEKLKVEEEK 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1175 GHCFQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTppqslsa 1254
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITK------- 865
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 1255 gAAESARLLCSGQALEELRGQYIKAVKKIKRDMLRYIQESKERATEMVKAEVLRERQDTARKMHKYYLSCLQQI---LED 1331
Cdd:pfam02463 866 -EELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEellLEE 944
|
810
....*....|....
gi 1958766046 1332 NGKEEGAEKKIMSA 1345
Cdd:pfam02463 945 ADEKEKEENNKEEE 958
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
825-1044 |
5.90e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 825 QQEKELTVKEalRKSEVELELKYCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSL-AL 903
Cdd:TIGR02169 672 EPAELQRLRE--RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLsSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 904 SEAKEKWKSElqnMKPNVASVQELEEKIHSLQKELE-----LKDEEVPvAVRAELakarnewnkEKQEEIHKIQEQNEED 978
Cdd:TIGR02169 750 EQEIENVKSE---LKELEARIEELEEDLHKLEEALNdlearLSHSRIP-EIQAEL---------SKLEEEVSRIEARLRE 816
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766046 979 YRQFLEDhRNKINEVLTAAKEDFVKQKTELLLQKETEFQAC-LDQSRKEWTLQEAQRTQLEVHRYEE 1044
Cdd:TIGR02169 817 IEQKLNR-LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIeNLNGKKEELEEELEELEAALRDLES 882
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
289-1074 |
6.94e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 289 EMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRAreqhesvvAGLTQKYEEQVSCLQKN 368
Cdd:TIGR00618 207 TLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQL--------LKQLRARIEELRAQEAV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 369 LDTTITALQEQVTWFPMSNCQwSKVGYFVLSEEDVCTRLKDHVQQLE--RNQEAVRLEKTELINRLTRSLEDSQKQCAHL 446
Cdd:TIGR00618 279 LEETQERINRARKAAPLAAHI-KAVTQIEQQAQRIHTELQSKMRSRAklLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHI 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 447 LQSGSVHEVTQLQLQLQQAQKAHIlsesmnKALQEELTGLKEEISLyeSAAELGVLPGDVEGDLSVELTESCVglgiknv 526
Cdd:TIGR00618 358 RDAHEVATSIREISCQQHTLTQHI------HTLQQQKTTLTQKLQS--LCKELDILQREQATIDTRTSAFRDL------- 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 527 swKQSKANSVAQQEPPNEKLSKDEVILKLKTQVQRllssnsMKRHLVSELQRDLRDCRETMEALQQ--SKDSDRGMETKT 604
Cdd:TIGR00618 423 --QGQLAHAKKQQELQQRYAELCAAAITCTAQCEK------LEKIHLQESAQSLKEREQQLQTKEQihLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 605 ETSEKTTNQLWLDSPE---AINREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDlCNQMRQMVQEFDHDKQEAvdrce 681
Cdd:TIGR00618 495 RLLELQEEPCPLCGSCihpNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQ-LTSERKQRASLKEQMQEI----- 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 682 rtyqQHHEAMKAQIRESllakhaaekqhlsevyegtqsqLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQ 761
Cdd:TIGR00618 569 ----QQSFSILTQCDNR----------------------SKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 762 EQTSRQKLI---QQLEEEWQSKLNH------SLPARRKATSDCGSQTDQAAYPAAmpnaealVLAEEQAHQVQQEKELTV 832
Cdd:TIGR00618 623 PEQDLQDVRlhlQQCSQELALKLTAlhalqlTLTQERVREHALSIRVLPKELLAS-------RQLALQKMQSEKEQLTYW 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 833 KEalrksevelELKYCESIAQKVETAVQNARsrwilelPMLAEYKALLRAQQQEWAkQQEVAVAHRLSLALSEAKEKWKs 912
Cdd:TIGR00618 696 KE---------MLAQCQTLLRELETHIEEYD-------REFNEIENASSSLGSDLA-AREDALNQSLKELMHQARTVLK- 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 913 elqnmkpnvASVQELEEKIHSLQKELELKDEEvpvavrAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHRNKINE 992
Cdd:TIGR00618 758 ---------ARTEAHFNNNEEVTAALQTGAEL------SHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQ 822
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 993 VLTAAKEdfvKQKTELLLQKETEFQACLDQSRKEW-----TLQEAQRTQLEVHRYEEDIltvldFLLRDTQLEYDGDSQG 1067
Cdd:TIGR00618 823 CETLVQE---EEQFLSRLEEKSATLGEITHQLLKYeecskQLAQLTQEQAKIIQLSDKL-----NGINQIKIQFDGDALI 894
|
....*..
gi 1958766046 1068 KQLLEVM 1074
Cdd:TIGR00618 895 KFLHEIT 901
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
624-1038 |
7.88e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 624 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQ---------HHEAMKAQ 694
Cdd:pfam15921 109 RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQieqlrkmmlSHEGVLQE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 695 IRESLL------AKHAAEKQHLSEV-YEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTME--KAQEQTS 765
Cdd:pfam15921 189 IRSILVdfeeasGKKIYEHDSMSTMhFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIEllLQQHQDR 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 766 RQKLIQQLEEEWQSKLNHSLPARRKATSdCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQEKElTVKEALRKSEVEL-E 844
Cdd:pfam15921 269 IEQLISEHEVEITGLTEKASSARSQANS-IQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRS-ELREAKRMYEDKIeE 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 845 LKYCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQqevavahrLSLALSEAKEKWKSELQNmkpnvasv 924
Cdd:pfam15921 347 LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKE--------LSLEKEQNKRLWDRDTGN-------- 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766046 925 qelEEKIHSLQKELELKDEEVPvAVRAELAKARNEWNKEKQEEIHKIQEQNE------------EDYRQFLEdhrnKINE 992
Cdd:pfam15921 411 ---SITIDHLRRELDDRNMEVQ-RLEALLKAMKSECQGQMERQMAAIQGKNEslekvssltaqlESTKEMLR----KVVE 482
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766046 993 VLTAAK------EDFVKQKTELLLQKETEFQACLDQ-----SRKEWTLQEAQRTQLE 1038
Cdd:pfam15921 483 ELTAKKmtlessERTVSDLTASLQEKERAIEATNAEitklrSRVDLKLQELQHLKNE 539
|
|
| |
