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Conserved domains on  [gi|2082406317|ref|XP_042974297|]
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early nodulin-like protein 1 [Carya illinoinensis]

Protein Classification

early nodulin-like family protein( domain architecture ID 10181143)

early nodulin-like family protein belongs to the phytocyanin-like group of blue copper proteins from the cupredoxin superfamily, and may be involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 31-134 4.37e-48

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


:

Pssm-ID: 259905  Cd Length: 103  Bit Score: 151.65  E-value: 4.37e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  31 FEFQVGGTQtqGWVVPPvNDSKIYNDWASETRFRVGDTVRFKY--EKDSVMEVNETDYKRCNSSHPNFFSNTGNTVFGLD 108
Cdd:cd11019     1 REFKVGGKD--GWKVPP-SASESYNQWAERNRFQVGDSLVFKYdkGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLD 77

                          90       100
                  ....*....|....*....|....*.
gi 2082406317 109 YPGPFYFISGVSGHCKKGQRLIVKVM 134
Cdd:cd11019    78 RSGPFYFISGAPGHCEKGQKLIVVVM 103
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 31-134 4.37e-48

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 151.65  E-value: 4.37e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  31 FEFQVGGTQtqGWVVPPvNDSKIYNDWASETRFRVGDTVRFKY--EKDSVMEVNETDYKRCNSSHPNFFSNTGNTVFGLD 108
Cdd:cd11019     1 REFKVGGKD--GWKVPP-SASESYNQWAERNRFQVGDSLVFKYdkGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLD 77

                          90       100
                  ....*....|....*....|....*.
gi 2082406317 109 YPGPFYFISGVSGHCKKGQRLIVKVM 134
Cdd:cd11019    78 RSGPFYFISGAPGHCEKGQKLIVVVM 103
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 48-127 9.74e-26

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 94.34  E-value: 9.74e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  48 VNDSKIYNDWASETRFRVGDTVRFKYEKD--SVMEVNETDYKRCNSSHPNFFSNTGNTVFGLDYPGPFYFISGVSGHCKK 125
Cdd:pfam02298   3 VNAESDYTTWAQGKTFRVGDTLVFKYDSDfhNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPGHCKF 82


                  ..
gi 2082406317 126 GQ 127
Cdd:pfam02298  83 GM 84
PLN03148 PLN03148
Blue copper-like protein; Provisional
 16-171 5.68e-09

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 52.57  E-value: 5.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  16 LLTVFSYIGLFPVSSfefqVGGTQ-----TQGWvvppvNDSKIYNDWASETRFRVGDTVRFKYEKD--SVMEVNETDYKR 88
Cdd:PLN03148    3 HLLLFCFFALFSASA----TTATDhivgaNKGW-----NPGINYTLWANNQTFYVGDLISFRYQKTqyNVFEVNQTGYDN 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  89 CNSShpnffSNTGNTVFGLDY-----PGPFYFISGvSGHCKKGQRLIVKV--MSAEAEQSAPSEGEKSSGSRVAVSSLGV 161
Cdd:PLN03148   74 CTTE-----GAAGNWTSGKDFiplnkAKRYYFICG-NGQCFNGMKVTILVhpLPPPPSHTAAANGAKSHSAAPAAFHKGL 147

                         170
                  ....*....|.
gi 2082406317 162 VSAL-FVLCFA 171
Cdd:PLN03148  148 VALRgLVLWMA 158
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 31-134 4.37e-48

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 151.65  E-value: 4.37e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  31 FEFQVGGTQtqGWVVPPvNDSKIYNDWASETRFRVGDTVRFKY--EKDSVMEVNETDYKRCNSSHPNFFSNTGNTVFGLD 108
Cdd:cd11019     1 REFKVGGKD--GWKVPP-SASESYNQWAERNRFQVGDSLVFKYdkGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLD 77

                          90       100
                  ....*....|....*....|....*.
gi 2082406317 109 YPGPFYFISGVSGHCKKGQRLIVKVM 134
Cdd:cd11019    78 RSGPFYFISGAPGHCEKGQKLIVVVM 103
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 32-133 3.33e-32

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 111.20  E-value: 3.33e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  32 EFQVGGTQtqGWVVPpVNdskiYNDWASETRFRVGDTVRFKYEK--DSVMEVNETDYKRCNSSHPNFFSNTGNTVFGLDY 109
Cdd:cd04216     2 DYTVGDSN--GWDLP-VN----YTAWASGKTFRVGDSLVFNYNAgaHSVVEVNEADYDSCDTSNPINTYTSGNDSVTLTK 74

                          90       100
                  ....*....|....*....|....
gi 2082406317 110 PGPFYFISGVSGHCKKGQRLIVKV 133
Cdd:cd04216    75 PGTRYFICGVPGHCQSGMKLAINV 98
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 48-127 9.74e-26

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 94.34  E-value: 9.74e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  48 VNDSKIYNDWASETRFRVGDTVRFKYEKD--SVMEVNETDYKRCNSSHPNFFSNTGNTVFGLDYPGPFYFISGVSGHCKK 125
Cdd:pfam02298   3 VNAESDYTTWAQGKTFRVGDTLVFKYDSDfhNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPGHCKF 82


                  ..
gi 2082406317 126 GQ 127
Cdd:pfam02298  83 GM 84
Mavicyanin cd11014
Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a ...
 42-134 9.92e-23

Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini) peelings. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Mavicyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue, like in the case of stellacyanin. The biological roles of mavicyanin have not been elucidated yet.


Pssm-ID: 259900  Cd Length: 101  Bit Score: 87.06  E-value: 9.92e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  42 GWVVPpvnDSKIYNDWASETRFRVGDTVRFKYEKD--SVMEVNETDYKRCNSSHPNFFSNTGNTVFGLDYPGPFYFISGV 119
Cdd:cd11014    10 GWTVY---DSDYYYKWSSSKTFHVGDSLIFQYNKEfhDVTEVTGEEFESCNSTSPIAVYNTGHDIIKLTKPGQYYFICGV 86

                          90
                  ....*....|....*
gi 2082406317 120 SGHCKKGQRLIVKVM 134
Cdd:cd11014    87 PGHCDSGQKLQVNVT 101
Stellacyanin cd13920
Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a ...
 31-133 7.30e-22

Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a subclass of the phytocyanins, a ubiquitous family of plant cupredoxins. Stellacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue. The glutamine residue substitutes for a methione ligand typically found in other blue copper proteins. The exact function of stellacyanin is unknown. However, stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall.


Pssm-ID: 259987 [Multi-domain]  Cd Length: 101  Bit Score: 84.67  E-value: 7.30e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  31 FEFQVGGTQtqGWVVPPvnDSKIYNDWASETRFRVGDTVRFKYEKD--SVMEVNETDYKRCNSSHPNFFSNTGNTVFGLD 108
Cdd:cd13920     1 TDHIVGGSL--GWSIPP--NASFYTDWAANRTFRVGDSLVFNFEAGvhNVVEVSKEEYDNCTTTNPIKVFTTGPVIITLN 76

                          90       100
                  ....*....|....*....|....*
gi 2082406317 109 YPGPFYFISGVSGHCKKGQRLIVKV 133
Cdd:cd13920    77 ETGTRYFICTVGNHCSLGQKVSINV 101
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 37-133 2.27e-17

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259903  Cd Length: 99  Bit Score: 73.19  E-value: 2.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  37 GTQTQGWVvPPVNdskiYNDWASETRFRVGDTVRFKYEKD--SVMEVNETDYKRCNSSHPnFFSNT--GNTVFGLDYPGP 112
Cdd:cd11017     6 GGNRIGWN-PNIN----YTDWAKMHGFYSGDWLVFRYQRGrhNVVQVNETGYDNCDASNP-ISNYSsgGRDIFQLNETKR 79

                          90       100
                  ....*....|....*....|.
gi 2082406317 113 FYFISGvSGHCKKGQRLIVKV 133
Cdd:cd11017    80 YYFICG-RGYCYGGMKLAITV 99
Plantacyanin cd11013
Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong ...
 47-133 1.28e-11

Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Plantacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The exact function of plantacyanin is unknown. However plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and be involved in plant defense responses.


Pssm-ID: 259899  Cd Length: 95  Bit Score: 58.13  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  47 PVNDSKIY----NDWASETRFRVGDTVRFKYEKDS--VMEVNETDYKRCNSSHPNFFSNTGNTVFGLDYpGPFYFISGVS 120
Cdd:cd11013     4 VVGDSIGWtfgvVGWPNGKTFRAGDVLVFNYDPSAhnVVVVDEGGYRTCKAPPGAIVYTSGDDKITLPK-GVNYFICSFP 82

                          90
                  ....*....|...
gi 2082406317 121 GHCKKGQRLIVKV 133
Cdd:cd11013    83 GHCTSGMKIAVTA 95
PLN03148 PLN03148
Blue copper-like protein; Provisional
 16-171 5.68e-09

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 52.57  E-value: 5.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  16 LLTVFSYIGLFPVSSfefqVGGTQ-----TQGWvvppvNDSKIYNDWASETRFRVGDTVRFKYEKD--SVMEVNETDYKR 88
Cdd:PLN03148    3 HLLLFCFFALFSASA----TTATDhivgaNKGW-----NPGINYTLWANNQTFYVGDLISFRYQKTqyNVFEVNQTGYDN 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082406317  89 CNSShpnffSNTGNTVFGLDY-----PGPFYFISGvSGHCKKGQRLIVKV--MSAEAEQSAPSEGEKSSGSRVAVSSLGV 161
Cdd:PLN03148   74 CTTE-----GAAGNWTSGKDFiplnkAKRYYFICG-NGQCFNGMKVTILVhpLPPPPSHTAAANGAKSHSAAPAAFHKGL 147

                         170
                  ....*....|.
gi 2082406317 162 VSAL-FVLCFA 171
Cdd:PLN03148  148 VALRgLVLWMA 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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