NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2098123020|ref|XP_043661555|]
View 

uncharacterized protein LOC122625529 [Drosophila teissieri]

Protein Classification

Myb/SANT-like transcription factor( domain architecture ID 10651957)

Myb/SANT-like transcription factor with an N-terminal MADF domain, which resembles the 3 alpha-helix bundle of the DNA-binding Myb domains

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
7-102 4.89e-22

subfamily of SANT domain;


:

Pssm-ID: 214738  Cd Length: 89  Bit Score: 83.18  E-value: 4.89e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2098123020    7 ELIAAVFKKRCLWDQPNKLYHNRQIINQNWNEISNELNVDAMTLKKKWKQLRDTFRAELRKYPPNRSGDAGPdavnemcS 86
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGLSVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK-------S 73

                           90
                   ....*....|....*.
gi 2098123020   87 QWSHFESMMFIKDQIK 102
Cdd:smart00595  74 KWEYFDRLSFLRPVIR 89
 
Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
7-102 4.89e-22

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 83.18  E-value: 4.89e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2098123020    7 ELIAAVFKKRCLWDQPNKLYHNRQIINQNWNEISNELNVDAMTLKKKWKQLRDTFRAELRKYPPNRSGDAGPdavnemcS 86
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGLSVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK-------S 73

                           90
                   ....*....|....*.
gi 2098123020   87 QWSHFESMMFIKDQIK 102
Cdd:smart00595  74 KWEYFDRLSFLRPVIR 89
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
 8-97 1.29e-17

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 71.55  E-value: 1.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2098123020   8 LIAAVFKKRCLWDQPNKLYHNRQIINQNWNEISNELN--VDAMTLKKKWKQLRDTFRAELRKYPPNRSGDAgpdavnemC 85
Cdd:pfam10545   1 LIELVREHPCLWDRSHPDYRNRDARERAWEEIAEELGsdVPVEDCKKRWKNLRDQYRRELRRKRTNSGELY--------K 72

                          90
                  ....*....|..
gi 2098123020  86 SQWSHFESMMFI 97
Cdd:pfam10545  73 SRWYYYEELSFL 84
 
Name Accession Description Interval E-value
MADF smart00595
subfamily of SANT domain;
7-102 4.89e-22

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 83.18  E-value: 4.89e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2098123020    7 ELIAAVFKKRCLWDQPNKLYHNRQIINQNWNEISNELNVDAMTLKKKWKQLRDTFRAELRKYPPNRSGDAGPdavnemcS 86
Cdd:smart00595   1 RLIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGLSVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK-------S 73

                           90
                   ....*....|....*.
gi 2098123020   87 QWSHFESMMFIKDQIK 102
Cdd:smart00595  74 KWEYFDRLSFLRPVIR 89
MADF_DNA_bdg pfam10545
Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 ...
 8-97 1.29e-17

Alcohol dehydrogenase transcription factor Myb/SANT-like; The myb/SANT-like domain in Adf-1 (MADF) is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains.


Pssm-ID: 463144  Cd Length: 84  Bit Score: 71.55  E-value: 1.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2098123020   8 LIAAVFKKRCLWDQPNKLYHNRQIINQNWNEISNELN--VDAMTLKKKWKQLRDTFRAELRKYPPNRSGDAgpdavnemC 85
Cdd:pfam10545   1 LIELVREHPCLWDRSHPDYRNRDARERAWEEIAEELGsdVPVEDCKKRWKNLRDQYRRELRRKRTNSGELY--------K 72

                          90
                  ....*....|..
gi 2098123020  86 SQWSHFESMMFI 97
Cdd:pfam10545  73 SRWYYYEELSFL 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH