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Conserved domains on  [gi|2118808566|ref|XP_044317754|]
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uncharacterized protein LOC123038127 [Drosophila rhopaloa]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF5641 pfam18701
Family of unknown function (DUF5641); This presumed domain is found in a range of ...
140-233 2.36e-44

Family of unknown function (DUF5641); This presumed domain is found in a range of retrotransposon polyproteins.


:

Pssm-ID: 465838  Cd Length: 94  Bit Score: 143.78  E-value: 2.36e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2118808566 140 KRWQLLSTLRQRFWQAWSKEYVHSLQRKTKWQTTSPNLEVGALVIIHEDNTPPQRWITGRVISVVAGADGKIRVAEIKTA 219
Cdd:pfam18701   1 SRWQLVQQLRQHFWKRWSSEYLPQLQQRSKWTSSKPNLKVGDLVLVKEDNLPPLKWPLGRVIEVHPGSDGVVRVVTVRTA 80
                          90
                  ....*....|....
gi 2118808566 220 TDVFKRPIQKLAAL 233
Cdd:pfam18701  81 TGELKRPVVKLCPL 94
 
Name Accession Description Interval E-value
DUF5641 pfam18701
Family of unknown function (DUF5641); This presumed domain is found in a range of ...
140-233 2.36e-44

Family of unknown function (DUF5641); This presumed domain is found in a range of retrotransposon polyproteins.


Pssm-ID: 465838  Cd Length: 94  Bit Score: 143.78  E-value: 2.36e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2118808566 140 KRWQLLSTLRQRFWQAWSKEYVHSLQRKTKWQTTSPNLEVGALVIIHEDNTPPQRWITGRVISVVAGADGKIRVAEIKTA 219
Cdd:pfam18701   1 SRWQLVQQLRQHFWKRWSSEYLPQLQQRSKWTSSKPNLKVGDLVLVKEDNLPPLKWPLGRVIEVHPGSDGVVRVVTVRTA 80
                          90
                  ....*....|....
gi 2118808566 220 TDVFKRPIQKLAAL 233
Cdd:pfam18701  81 TGELKRPVVKLCPL 94
 
Name Accession Description Interval E-value
DUF5641 pfam18701
Family of unknown function (DUF5641); This presumed domain is found in a range of ...
140-233 2.36e-44

Family of unknown function (DUF5641); This presumed domain is found in a range of retrotransposon polyproteins.


Pssm-ID: 465838  Cd Length: 94  Bit Score: 143.78  E-value: 2.36e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2118808566 140 KRWQLLSTLRQRFWQAWSKEYVHSLQRKTKWQTTSPNLEVGALVIIHEDNTPPQRWITGRVISVVAGADGKIRVAEIKTA 219
Cdd:pfam18701   1 SRWQLVQQLRQHFWKRWSSEYLPQLQQRSKWTSSKPNLKVGDLVLVKEDNLPPLKWPLGRVIEVHPGSDGVVRVVTVRTA 80
                          90
                  ....*....|....
gi 2118808566 220 TDVFKRPIQKLAAL 233
Cdd:pfam18701  81 TGELKRPVVKLCPL 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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