uncharacterized protein LOC123038133 [Drosophila rhopaloa]
CCHC-type zinc finger protein( domain architecture ID 1000253)
CCHC-type zinc finger protein similar to human cellular nucleic acid-binding protein, a single-stranded DNA-binding protein that preferentially binds to the sterol regulatory element (SRE) sequence 5'-GTGCGGTG-3', and thereby mediates transcriptional repression
List of domain hits
Name | Accession | Description | Interval | E-value | ||
PTZ00368 super family | cl31762 | universal minicircle sequence binding protein (UMSBP); Provisional |
157-227 | 1.91e-11 | ||
universal minicircle sequence binding protein (UMSBP); Provisional The actual alignment was detected with superfamily member PTZ00368: Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 59.82 E-value: 1.91e-11
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Name | Accession | Description | Interval | E-value | ||
PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
157-227 | 1.91e-11 | ||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 59.82 E-value: 1.91e-11
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AIR1 | COG5082 | Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ... |
151-220 | 8.35e-09 | ||
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Pssm-ID: 227414 [Multi-domain] Cd Length: 190 Bit Score: 53.32 E-value: 8.35e-09
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zf-CCHC | pfam00098 | Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ... |
179-194 | 1.19e-03 | ||
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger. Pssm-ID: 395050 [Multi-domain] Cd Length: 18 Bit Score: 35.20 E-value: 1.19e-03
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ZnF_C2HC | smart00343 | zinc finger; |
178-194 | 1.68e-03 | ||
zinc finger; Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 34.73 E-value: 1.68e-03
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Name | Accession | Description | Interval | E-value | ||
PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
157-227 | 1.91e-11 | ||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 59.82 E-value: 1.91e-11
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
168-220 | 8.97e-10 | ||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 55.20 E-value: 8.97e-10
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
164-218 | 7.24e-09 | ||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 52.89 E-value: 7.24e-09
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AIR1 | COG5082 | Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ... |
151-220 | 8.35e-09 | ||
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Pssm-ID: 227414 [Multi-domain] Cd Length: 190 Bit Score: 53.32 E-value: 8.35e-09
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
172-216 | 5.77e-07 | ||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 47.49 E-value: 5.77e-07
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AIR1 | COG5082 | Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ... |
179-220 | 8.93e-06 | ||
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Pssm-ID: 227414 [Multi-domain] Cd Length: 190 Bit Score: 44.84 E-value: 8.93e-06
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zf-CCHC | pfam00098 | Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ... |
179-194 | 1.19e-03 | ||
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger. Pssm-ID: 395050 [Multi-domain] Cd Length: 18 Bit Score: 35.20 E-value: 1.19e-03
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ZnF_C2HC | smart00343 | zinc finger; |
178-194 | 1.68e-03 | ||
zinc finger; Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 34.73 E-value: 1.68e-03
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Blast search parameters | ||||
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