|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
89-261 |
2.89e-23 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 100.25 E-value: 2.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 89 KKLTKQDNLALIKSL-------NlslskdggkKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISK 161
Cdd:cd21340 12 KNITKIDNLSLCKNLkvlylydN---------KITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 162 IEGIENMCNLQKLNLAGNEIEhipvwLGKKL-----------KSLRVLNLKGNKISSLQDISKLKPLQDLI--------- 221
Cdd:cd21340 83 VEGLENLTNLEELHIENQRLP-----PGEKLtfdprslaalsNSLRVLNISGNNIDSLEPLAPLRNLEQLDasnnqisdl 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 222 --------------SLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQ 261
Cdd:cd21340 158 eelldllsswpslrELDLTGNPVCKKPKYRDKIILASKSLEVLDGKEITDTERQ 211
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1365-2239 |
4.60e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 108.22 E-value: 4.60e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1365 RASKRQSEKEMEELHHN---IDDLLQEkksLECEVEELHRTVQKRQQQKDfidgnVESLMTELEIEKSLKHHEDIVDEIE 1441
Cdd:TIGR02168 171 KERRKETERKLERTRENldrLEDILNE---LERQLKSLERQAEKAERYKE-----LKAELRELELALLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1442 CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQ 1521
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1522 ADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRAEL 1601
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEE-------KLEELKEELESLEAELEELEAELEELESR-------LEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1602 EKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA-LRLGETEVTEKCNHIREVKSLLEELSFQKGELNV 1680
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1681 QISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQlENHELQGLKLQHDQRVSELEKTQVAVLEEKLELE 1760
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK-NQSGLSGILGVLSELISVDEGYEAAIEAALGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1761 nlQQI----SQQQKGEIEWQKQ----------LLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTK 1826
Cdd:TIGR02168 548 --QAVvvenLNAAKKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1827 RV---LAAAEENSKMEQSNL--------------------EKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1883
Cdd:TIGR02168 626 LVvddLDNALELAKKLRPGYrivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRK 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1884 AVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLV 1963
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1964 QQEMMFQRLQKERESEESKLEtskvtlkeqqhQLEKELTDQKSKLDQVLSKvlaaeervrtlqeeerwCESLEKTLSQTK 2043
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALD-----------ELRAELTLLNEEAANLRER-----------------LESLERRIAATE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2044 RQLSEREQQLVEKSGELLALQKEadsmRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKnlltinedserdssl 2123
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELEE--------------- 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2124 lskeqkqenscIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKD--LERRQMEISDAMRTLKSEVKD- 2200
Cdd:TIGR02168 899 -----------LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErlSEEYSLTLEEAEALENKIEDDe 967
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 2217375230 2201 -EIRTSLKNLNQFLPEL-PADLEAILE------RNENLEGELESLKE 2239
Cdd:TIGR02168 968 eEARRRLKRLENKIKELgPVNLAAIEEyeelkeRYDFLTAQKEDLTE 1014
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-364 |
5.52e-21 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 98.08 E-value: 5.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQ 172
Cdd:COG4886 134 NLTNLKELDLS-----NNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLE 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 173 KLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQDISKLKPLQdliSLILVENPVVTLPHYLQFTifHLRSLeSLEG 252
Cdd:COG4886 209 ELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLPELGNLTNLE---ELDLSNNQLTDLPPLANLT--NLKTL-DLSN 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 253 QPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKN 332
Cdd:COG4886 282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
|
250 260 270
....*....|....*....|....*....|..
gi 2217375230 333 ELPLSWFLAGPFLLILYSSLKLKQKTIELTRA 364
Cdd:COG4886 362 LLTLLLTLGLLGLLEATLLTLALLLLTLLLLL 393
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
454-1077 |
3.64e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.47 E-value: 3.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 454 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAgkdllykQLSGRLQLVNKLRQEALD 533
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA-------RLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 534 LELQMEKQKQEIAGKQKEIKDLQIAIdsldskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 613
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEEL-------------EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 614 LEEQLTEGQIAANEALKKDLEgvisglqeylgtIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMR 693
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEE------------LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 694 KELAELESALQEQhevnaslQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNA 773
Cdd:COG1196 452 AELEEEEEALLEL-------LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 774 LGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLV--RPEEVAARVDELRRKLKLGTGEMNIHSP 851
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 852 SDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQM 931
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 932 ENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATA 1011
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 1012 ---ELTIAKDQLKSLhGTVmkiNQERAEELQEA-ERFSRKAAQAArDLTRAEAEIELL-QNLLRQKGEQFR 1077
Cdd:COG1196 765 lerELERLEREIEAL-GPV---NLLAIEEYEELeERYDFLSEQRE-DLEEARETLEEAiEEIDRETRERFL 830
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
462-1142 |
2.00e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.16 E-value: 2.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 462 EKKISAAQTRLSELHDEIEKAEQQI--L----RATEEFKQLEEAIQLKKISEAGkdLLYKQLSGRLQlvnKLRQEALDLE 535
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQLepLerqaEKAERYRELKEELKELEAELLL--LKLRELEAELE---ELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 536 LQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLE 615
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEEL-----------------ELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 616 EQLTEgqiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaENMRKE 695
Cdd:COG1196 316 ERLEE-----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE------EELEEL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 696 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALG 775
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 776 KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHspsdvl 855
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG-------FLEGVKAALLLAGLRGLAGAVAVLIG------ 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 856 gksladlqkqfseilarskWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFdkrqhEARIQQMENEI 935
Cdd:COG1196 532 -------------------VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF-----LPLDKIRARAA 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 936 HYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVfgldkelkklkkAVATSDKLATAELTI 1015
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV------------TLAGRLREVTLEGEG 655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1016 AKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEmektgvgtgansqVLE 1095
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE-------------ELE 722
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 2217375230 1096 IEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRREV 1142
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1340-2100 |
2.50e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.89 E-value: 2.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1340 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1419
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1420 LMTELeiekslkhhEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1499
Cdd:TIGR02168 314 LERQL---------EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1500 ERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERN 1579
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1580 EDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLD------RQLGHKKEELHLLQG---SMVQAKADLQEALR-- 1648
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvKALLKNQSGLSGILGvlsELISVDEGYEAAIEaa 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1649 LGETE---VTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDML- 1724
Cdd:TIGR02168 543 LGGRLqavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLl 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1725 -------QLENHELQGLKLQHDQRVSELEKTQVAVLEEKLelenlqqisqqqKGEIEWQKQLLERdKREIERMTAESRAL 1797
Cdd:TIGR02168 623 ggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGGVIT------------GGSAKTNSSILER-RREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1798 QSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQ 1877
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1878 LQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1957
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1958 NKLKLVQQEMMFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEerwCESLEK 2037
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEELRELESKRSELRRE---LEELRE 922
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 2038 TLSQTKRQLSEREQQLVEKSGELLALQK-EADSMRAdfslLRNQFLTERKKAEKQVASLKEALK 2100
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEA----LENKIEDDEEEARRRLKRLENKIK 982
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
55-250 |
3.87e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 89.61 E-value: 3.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 55 QVEIADENNMLLDYQDHKGADSHAGVRYITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSY 134
Cdd:COG4886 43 LSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSG 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 135 NLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQD-I 211
Cdd:COG4886 123 NQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDLPEpL 201
|
170 180 190
....*....|....*....|....*....|....*....
gi 2217375230 212 SKLKPLQdliSLILVENPVVTLPHylqfTIFHLRSLESL 250
Cdd:COG4886 202 GNLTNLE---ELDLSGNQLTDLPE----PLANLTNLETL 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1555-2286 |
1.68e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.73 E-value: 1.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1555 LSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKeseVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQG 1634
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLV---LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1635 SMVQAKADLQEAlrlgETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQvvlrQMSKHK 1714
Cdd:TIGR02168 275 EVSELEEEIEEL----QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA----ELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1715 TELKNILDMLQLENHELQGLKLQHDQRVSELEKtqvAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAES 1794
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEE---QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1795 RALQScvECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENskmeqsnLEKLELNVRKLQQELDQLNRDKLSLHNDISAM 1874
Cdd:TIGR02168 424 EELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA-------LEELREELEEAEQALDAAERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1875 QQQLQEKREAVNSLQEELAN------------------------------------VQDHLNLAKQDLLHTTKHQDVLLS 1918
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALLKNqsglsgilgvlselisvdegyeaaieaalggrlqavVVENLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1919 -------EQTRLQKDISEWANRFEDCQ---KEEETKQQQLQVLQN------------EIEENKLKLVQQEMMF------- 1969
Cdd:TIGR02168 575 flpldsiKGTEIQGNDREILKNIEGFLgvaKDLVKFDPKLRKALSyllggvlvvddlDNALELAKKLRPGYRIvtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1970 ----------------QRLQKERESEEskLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCE 2033
Cdd:TIGR02168 655 vrpggvitggsaktnsSILERRREIEE--LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2034 SLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQ---LEKNL 2110
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldeLRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2111 LTINEDSERDSSLLSKEQKQENSCiQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMA---NQKDLERRQMEI 2187
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAAT-ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEallNERASLEEALAL 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2188 SDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENLPftmnegpfeEKLNFSQVHIMDEHWR 2267
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS---------EEYSLTLEEAEALENK 962
|
810
....*....|....*....
gi 2217375230 2268 GEALREKLRHREDRLKAQL 2286
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
454-1138 |
3.72e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 3.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 454 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQlvnKLRQEALD 533
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE---ELESKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 534 LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 613
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 614 LEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMR 693
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 694 KELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDaeanqlKEELEKVTRLTQLEQSALQAELEKERQAL--- 770
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE------GYEAAIEAALGGRLQAVVVENLNAAKKAIafl 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 771 -KNALGKAQFSEE---KEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEM 846
Cdd:TIGR02168 566 kQNELGRVTFLPLdsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGY 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 847 NIHSPSDVL---------GKSLADLQKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEAR 916
Cdd:TIGR02168 646 RIVTLDGDLvrpggvitgGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 917 -----MNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEkkKKLEDAKSQEQVFGL 991
Cdd:TIGR02168 726 rqisaLRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE--AQIEQLKEELKALRE 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 992 DKELKKLKKAvATSDKLATAELTIA--KDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLL 1069
Cdd:TIGR02168 804 ALDELRAELT-LLNEEAANLRERLEslERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1070 RQKGEQF-RLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTgsdnKGGFENVLEEIAEL 1138
Cdd:TIGR02168 883 ASLEEALaLLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
528-840 |
1.24e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 1.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 528 RQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 607
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ---LRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 608 TEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 685
Cdd:TIGR02168 753 SKELTELEAEIEEleERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 686 AMDAENMRKELAE-LESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEanqlkEELEKVTRLTQLEQSALQAELE 764
Cdd:TIGR02168 833 IAATERRLEDLEEqIEELSEDIESLAAEIEELEELIEELESELEALLNERASL-----EEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217375230 765 KERQALKNALGKAQFSEEKEQEN-SELHAKLKHLQDdnNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLK 840
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRlEGLEVRIDNLQE--RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1819-2080 |
1.12e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1819 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1898
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1899 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERES 1978
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1979 EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSG 2058
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260
....*....|....*....|..
gi 2217375230 2059 ELLALQKEADSMRADFSLLRNQ 2080
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEA 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1763-2287 |
2.37e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 2.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1763 QQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSN 1842
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1843 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTR 1922
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1923 LQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELT 2002
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE----EEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2003 DQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLA---LQKEADSMRADFSLLRN 2079
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAE---ADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2080 QFLTERKKAEKQVASLKEAL----------KIQRSQLEKNLLTINEdSERDSSLLSKEQKQENSCIQKEMATI--ELVAQ 2147
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKagratflpldKIRARAALAAALARGA-IGAAVDLVASDLREADARYYVLGDTLlgRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2148 DNHERARRLMKELNQMQYEYT------------ELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPE 2215
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTlegeggsaggslTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 2216 LPADLEAILERNENLEGELESLKENLPFTMNEGPFEEKLNFSQVHIMDEhwrgEALREKLRHREDRLKAQLR 2287
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE----PPDLEELERELERLEREIE 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1372-2182 |
5.74e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.19 E-value: 5.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1372 EKEMEELHHNIDDLLQEKKSLECEVEELHR--TVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLK 1449
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1450 RRSELREADRLLAEAESELSCTKEKTKNAV-EKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLE 1528
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1529 QhkikqeeilkeinkivaakdsDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV 1608
Cdd:TIGR02169 343 R---------------------EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1609 TSQQQEMavldRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1688
Cdd:TIGR02169 402 NELKREL----DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1689 LTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVleEKLELENLQQISQQ 1768
Cdd:TIGR02169 478 YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAI--EVAAGNRLNNVVVE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1769 QKGEIEWQKQLLERdkREIERMT----AESRALQSCVECLSKEKE-----DLQEKCDIWEKKLAQ------------TKR 1827
Cdd:TIGR02169 556 DDAVAKEAIELLKR--RKAGRATflplNKMRDERRDLSILSEDGVigfavDLVEFDPKYEPAFKYvfgdtlvvedieAAR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1828 VLAAAEENSKMEQSNLEK-------------LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN 1894
Cdd:TIGR02169 634 RLMGKYRMVTLEGELFEKsgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1895 vqdhlnlAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRL-Q 1973
Cdd:TIGR02169 714 -------ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1974 KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWC-----------ESLEKTLSQT 2042
Cdd:TIGR02169 787 RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLkeqiksiekeiENLNGKKEEL 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2043 KRQLSEREQQLVEKSGELLALQKEADSMRADFSLLR---NQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSER 2119
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELErkiEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 2120 DSSLLSKEQKQEN-SCIQKEMATIELV---AQDNHERARRLMKEL----NQMQYEYTELKKQMANQKDLER 2182
Cdd:TIGR02169 947 PEEELSLEDVQAElQRVEEEIRALEPVnmlAIQEYEEVLKRLDELkekrAKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1338-2002 |
6.71e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 6.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1338 HNLENEVSRLEDIMQHLKSKKREerwMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNV 1417
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDE---LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1418 ESLmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAE-SELSCTKEKTKNAVEKFTDAKRSLLQTESDA 1496
Cdd:TIGR02168 389 AQL--ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEEL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1497 EELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLS------KKKEK--------- 1561
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSelisvdEGYEAaieaalggr 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1562 ----LTEELQKLQKDIEMAERNEDHHLQVLkeseVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELH-----LL 1632
Cdd:TIGR02168 547 lqavVVENLNAAKKAIAFLKQNELGRVTFL----PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyLL 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1633 QGSMV----QAKADLQEALRLGETEVTEKCNHIREVKSlleeLSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLR 1708
Cdd:TIGR02168 623 GGVLVvddlDNALELAKKLRPGYRIVTLDGDLVRPGGV----ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1709 QMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIE 1788
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1789 RMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1868
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1869 NDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanrfedCQKEEETKQQQL 1948
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE-------LREKLAQLELRL 931
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 1949 QVLQNEIEENKLKL-VQQEMMFQrlqkERESEESKLETSKVTLKEQQHQLEKELT 2002
Cdd:TIGR02168 932 EGLEVRIDNLQERLsEEYSLTLE----EAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1368-1957 |
7.50e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 7.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1368 KRQSEKEMEELHHN---IDDLLQEK----KSLE--CEVEELHRTVQKRQQQKDfidgnveSLMTELEIEKSLKHHEDIVD 1438
Cdd:COG1196 174 KEEAERKLEATEENlerLEDILGELerqlEPLErqAEKAERYRELKEELKELE-------AELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1439 EIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLR 1518
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1519 SLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKR 1598
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1599 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGEL 1678
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1679 NVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILD----------------MLQLENHE--------LQGL 1734
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaayeaaleaalaaALQNIVVEddevaaaaIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1735 KLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEk 1814
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR- 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1815 cdiWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN 1894
Cdd:COG1196 646 ---LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375230 1895 VQDHLNLAKQDLLHttkhqdvLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1957
Cdd:COG1196 723 EEALEEQLEAEREE-------LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
130-279 |
1.70e-13 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 70.95 E-value: 1.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 130 LNLSYNLIGKIEKLDKLL-KLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL 208
Cdd:pfam14580 24 LDLRGYKIPIIENLGATLdQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQEL 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 209 QDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDL 279
Cdd:pfam14580 104 GDLDPLASLKKLTFLSLLRNPVTNKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMFRSKQGKQLAKEI 174
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1496-2095 |
2.35e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 2.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1496 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1575
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1576 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLgetevt 1655
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE------ 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1656 ekcnhIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLK 1735
Cdd:COG1196 374 -----LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1736 LQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRAlqscveclSKEKEDLQEKC 1815
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG--------VKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1816 DIWEKK--LAQTKRVLAAAEENSkMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELA 1893
Cdd:COG1196 521 GLAGAVavLIGVEAAYEAALEAA-LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1894 NVQDHLNLAKQDLLHTTKHQDVLLSEqtrlqkdiSEWANRFEDCQKEEETKQQQLQVLQNEIEEnklkLVQQEMMFQRLQ 1973
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGR--------TLVAARLEAALRRAVTLAGRLREVTLEGEG----GSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1974 KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwceslEKTLSQTKRQLSEREQQL 2053
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE------EALEEQLEAEREELLEEL 741
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 2217375230 2054 VEKSGELLALQKEADSMRADFSLLRnqflTERKKAEKQVASL 2095
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELE----RELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
602-982 |
3.37e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 3.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 602 SRIAKETEEIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 679
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKEleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 680 DQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYEA---ELEARLNLRDAEANQLKEELEKVT-RLTQL 754
Cdd:TIGR02168 757 TELEAEIEELEERLEEAeEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLErRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 755 EQSALQAELEKERQALKNALGKAQFSEEKEQENsELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDE 834
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSE 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 835 LRRKLKLgtgemnihspsdvlgksladLQKQFSEILARskweRDEAQVRERKLQEEMALQQEKLATGQEEfrqaceraLE 914
Cdd:TIGR02168 913 LRRELEE--------------------LREKLAQLELR----LEGLEVRIDNLQERLSEEYSLTLEEAEA--------LE 960
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 915 ARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEEiqgltdlqLQEADEEKERILAQLRELEK-KKKLEDA 982
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPvNLAAIEE--------YEELKERYDFLTAQKEDLTEaKETLEEA 1022
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1369-2053 |
7.73e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 7.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1369 RQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKhhEDIVDEIECIEKTLL 1448
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR--DKLTEEYAELKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1449 KRRSELREADRLLAEaeselscTKEKTKNAVEKFTDAKRSLlqtesdaEELERRAQETAVNLVKADQQLRSLQADAKDLE 1528
Cdd:TIGR02169 368 DLRAELEEVDKEFAE-------TRDELKDYREKLEKLKREI-------NELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1529 QHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV 1608
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1609 T---SQQQEMAVLDRQLGHKKEELHL---------LQGSMVQAKADLQEALRLGETEVTEKC-----NHIREVKSLLEEL 1671
Cdd:TIGR02169 514 EvlkASIQGVHGTVAQLGSVGERYATaievaagnrLNNVVVEDDAVAKEAIELLKRRKAGRAtflplNKMRDERRDLSIL 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1672 SfQKGELN-----VQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKtelknildMLQLENHELQ--------GLKLQH 1738
Cdd:TIGR02169 594 S-EDGVIGfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYR--------MVTLEGELFEksgamtggSRAPRG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1739 DQRVSELEKTQVAVLEEKLELENLQQISQQQkgEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIW 1818
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQS--ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1819 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLslhndisamQQQLQEKREAVNSLQEELANVQDH 1898
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEAR 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1899 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE- 1977
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDe 893
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375230 1978 --SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKtLSQTKRQLSEREQQL 2053
Cdd:TIGR02169 894 leAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
449-972 |
9.10e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 9.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 449 RGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNKLR 528
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE----------AELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 529 QEALDLELQMEKQKQEIAGKQKEIKDLQiaidsldskdpkhshmkaqksgkeqqldimnKQYQQLESRLDEILSRIAKET 608
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELA-------------------------------AQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 609 EEIKDLEEQLTEGQIAANEALKKDLEgvisgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMD 688
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEE-----AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 689 AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQ 768
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 769 ALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNI 848
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 849 HSPsdvlGKSLADLQKQFSEILARSKwERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARI 928
Cdd:COG1196 656 GSA----GGSLTGGSRRELLAALLEA-EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2217375230 929 QQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRE 972
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1684-2239 |
9.99e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 9.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1684 ERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQvavleeKLELENLQ 1763
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ------AEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1764 QISQQQKGEIEwQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNL 1843
Cdd:COG1196 296 ELARLEQDIAR-LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1844 EKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRL 1923
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1924 QKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEmmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTD 2003
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2004 QKSKLDQVLSKVLAA--EERVRTLQEEERWCESLEKT-----------LSQTKRQLSEREQQLVEKSGELLALQKEADSM 2070
Cdd:COG1196 532 VEAAYEAALEAALAAalQNIVVEDDEVAAAAIEYLKAakagratflplDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2071 RADFSLLRNQFL--------------------TERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQ 2130
Cdd:COG1196 612 DARYYVLGDTLLgrtlvaarleaalrravtlaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2131 ENSCIQKEMATIELVAQDNHERARRLMKELNQMQYE-YTELKKQMANQKDLERRQMEISDAMRTLKSEVK-DEIRTSLKN 2208
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEeQLEAEREELLEELLEEEELLEEEALEELPEPPDlEELERELER 771
|
570 580 590
....*....|....*....|....*....|....*...
gi 2217375230 2209 LNQFLPELPA-------DLEAILERNENLEGELESLKE 2239
Cdd:COG1196 772 LEREIEALGPvnllaieEYEELEERYDFLSEQREDLEE 809
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1358-2099 |
1.13e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.00 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1358 KREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHH--ED 1435
Cdd:pfam15921 88 KDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmlED 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1436 IVDEIECIEKTLLKRRSELREADRLLAEAEsELSCTKEKTKNAVEkfTDAKRSLLQTESDA-EELERRAQETAVNLVKAD 1514
Cdd:pfam15921 168 SNTQIEQLRKMMLSHEGVLQEIRSILVDFE-EASGKKIYEHDSMS--TMHFRSLGSAISKIlRELDTEISYLKGRIFPVE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1515 QQLRSLQADAKD-----LEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERnedhhlQVLKE 1589
Cdd:pfam15921 245 DQLEALKSESQNkiellLQQHQDRIEQLISE-------HEVEITGLTEKASSARSQANSIQSQLEIIQE------QARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1590 SEVLLQakraELEKLKSQVTSQQQEMAVLDRQLGHKKEElhlLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLE 1669
Cdd:pfam15921 312 NSMYMR----QLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1670 ELSFQKGELNVQiserKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQ 1749
Cdd:pfam15921 385 DLHKREKELSLE----KEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1750 VAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRvl 1829
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN-- 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1830 aaAEENSKMEQSNLEKLELN-------VRKLQQELDQLNR--------------DKLSLHNDISAMQQQLQE----KREA 1884
Cdd:pfam15921 539 --EGDHLRNVQTECEALKLQmaekdkvIEILRQQIENMTQlvgqhgrtagamqvEKAQLEKEINDRRLELQEfkilKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1885 VNSLQEELANVQDhLNLAKQDLLHTTkhqdvllSEQTRLQKDIS----EWANRFEDCQKEEETKQQQLQVLQNEIEEnkl 1960
Cdd:pfam15921 617 DAKIRELEARVSD-LELEKVKLVNAG-------SERLRAVKDIKqerdQLLNEVKTSRNELNSLSEDYEVLKRNFRN--- 685
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1961 KLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQ----------LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 2030
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKH 765
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375230 2031 WCESLEKTLSQtkrqlsereqqlveksgELLALQKEADSMRADFSLLRNQfltERKKAEKqVASLKEAL 2099
Cdd:pfam15921 766 FLKEEKNKLSQ-----------------ELSTVATEKNKMAGELEVLRSQ---ERRLKEK-VANMEVAL 813
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1336-1863 |
2.43e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 2.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1336 EHHNLENEVSRLEDIMQHLKSKKREERwmrASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFidg 1415
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE---AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR--- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1416 nveslmTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESD 1495
Cdd:COG1196 307 ------LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1496 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1575
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1576 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMV----------QAKADLQE 1645
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavavligvEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1646 ALRLGETEVTEKCNHIREVKSLLEELSFQKGE------LNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN 1719
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1720 ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQS 1799
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 1800 CVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLEL-----------NVRKLQQELDQLNRD 1863
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEeealeelpeppDLEELERELERLERE 775
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-250 |
4.24e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 70.73 E-value: 4.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 83 ITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNkiski 162
Cdd:COG4886 32 LLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 163 EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQdiSKLKPLQDLISLILVENPVVTLPHylqfTIF 242
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPE----ELG 179
|
....*...
gi 2217375230 243 HLRSLESL 250
Cdd:COG4886 180 NLTNLKEL 187
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
462-1079 |
1.40e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 70.33 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 462 EKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkISEAGKDllYKQLSGRLQlvnklRQEALDLELQMEKQ 541
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIELLEP------IRELAER--YAAARERLA-----ELEYLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 542 KQEIAGKQKEIKDLQIAIDSLDskdpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEIlsriakETEEIKDLEEqlteg 621
Cdd:COG4913 287 QRRLELLEAELEELRAELARLE----------AELERLEARLDALREELDELEAQIRGN------GGDRLEQLER----- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 622 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNE----CRKLRDEKETLLQRLTEVEQERDQLEIvamDAENMRKELA 697
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEA---ALRDLRRELR 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 698 ELESALqeqhevnASLQQTQGDLSAYE----AELEARLNLRDAEAN------QLKEE-------LEKV---TRLTQLeqs 757
Cdd:COG4913 423 ELEAEI-------ASLERRKSNIPARLlalrDALAEALGLDEAELPfvgeliEVRPEeerwrgaIERVlggFALTLL--- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 758 alqAELEKERQALK--NAL---GKAQFSEEKEQENSELHAKLkhlqDDNNLL-KQQLKD--FQNHLNHVvdgLVRPEEVA 829
Cdd:COG4913 493 ---VPPEHYAAALRwvNRLhlrGRLVYERVRTGLPDPERPRL----DPDSLAgKLDFKPhpFRAWLEAE---LGRRFDYV 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 830 --ARVDELRR-----------KLKLGTGEMNIHSPSD---VLGKS----LADLQKQfseiLARSKWERDEAQVRERKLQE 889
Cdd:COG4913 563 cvDSPEELRRhpraitragqvKGNGTRHEKDDRRRIRsryVLGFDnrakLAALEAE----LAELEEELAEAEERLEALEA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 890 EMALQQEKlatgqeefRQACERALEARMNF-DKRQHEARIQQMENEihyLQENLKSMEEIQGLTDlQLQEADEEKERILA 968
Cdd:COG4913 639 ELDALQER--------REALQRLAEYSWDEiDVASAEREIAELEAE---LERLDASSDDLAALEE-QLEELEAELEELEE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 969 QLRELEKK-----KKLEDAKSQEQvfgldkelkklkkavATSDKLATAELTIAKDQLKSLhgtvmkinQERAEELQEAER 1043
Cdd:COG4913 707 ELDELKGEigrleKELEQAEEELD---------------ELQDRLEAAEDLARLELRALL--------EERFAAALGDAV 763
|
650 660 670
....*....|....*....|....*....|....*.
gi 2217375230 1044 FSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLE 1079
Cdd:COG4913 764 ERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1388-2030 |
2.33e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 69.69 E-value: 2.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1388 EKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEK--------SLKHHEDIVDEIECIEKTLLKRRSELREADR 1459
Cdd:TIGR00606 406 EAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKeilekkqeELKFVIKELQQLEGSSDRILELDQELRKAER 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1460 LLAEAE--SELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEI 1537
Cdd:TIGR00606 486 ELSKAEknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1538 LKEINKIVAAKDSdFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLL-------------QAKRAELEKL 1604
Cdd:TIGR00606 566 LGYFPNKKQLEDW-LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLssyedklfdvcgsQDEESDLERL 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1605 KSQVTSQQQEMAVLD----------RQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQ 1674
Cdd:TIGR00606 645 KEEIEKSSKQRAMLAgatavysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKR 724
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1675 KGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLK-LQHDQRVSElektQVAVL 1753
Cdd:TIGR00606 725 RDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvCLTDVTIME----RFQME 800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1754 EEKLELENLQQISQQQKGEIEWQKQLLERDKREIERmtaESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAE 1833
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQH---ELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1834 ENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKH- 1912
Cdd:TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYm 957
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1913 -------QDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK---------LKLVQQEMMFQRLQKER 1976
Cdd:TIGR00606 958 kdienkiQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKiqerwlqdnLTLRKRENELKEVEEEL 1037
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 1977 ESEESKLETSKVTLKEQQHQ-LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 2030
Cdd:TIGR00606 1038 KQHLKEMGQMQVLQMKQEHQkLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
258-1063 |
6.10e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 6.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 258 QDRQEAFERFSlEEVERLERDLEKKMIETEELKSKQTRFLEEI-KNQDKLNKSLKEEAMLQKQScEELKSDLNTKNElpl 336
Cdd:TIGR02168 284 EELQKELYALA-NEISRLEQQKQILRERLANLERQLEELEAQLeELESKLDELAEELAELEEKL-EELKEELESLEA--- 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 337 swflagpfllilysslklkqktiELTRACQKQYELEQelafyKIDAKFEPLNYYPSEYAEIDKApdespyIGKSRYKRNM 416
Cdd:TIGR02168 359 -----------------------ELEELEAELEELES-----RLEELEEQLETLRSKVAQLELQ------IASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 417 FATESYIIDS--AQAVQIKKMEPDEQLRNDHMNLRGHTP-LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEF 493
Cdd:TIGR02168 405 LEARLERLEDrrERLQQEIEELLKKLEEAELKELQAELEeLEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 494 KQLEEAI--------QLKKISEAGKDLLYKQ--LSGRLQLVNKLRQEALDLELQMEKQKQEIAGkQKEIKDLQIA---ID 560
Cdd:TIGR02168 485 AQLQARLdslerlqeNLEGFSEGVKALLKNQsgLSGILGVLSELISVDEGYEAAIEAALGGRLQ-AVVVENLNAAkkaIA 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 561 SLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQL-------TEGQIAANEALKKDL 633
Cdd:TIGR02168 564 FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRP 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 634 EGVISGLQEYLGTIKGQATQAQNEcrklrdEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEqhevnasL 713
Cdd:TIGR02168 644 GYRIVTLDGDLVRPGGVITGGSAK------TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-------L 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 714 QQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALqAELEKERQALKNALGKAQFS-EEKEQENSELHA 792
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL-TELEAEIEELEERLEEAEEElAEAEAEIEELEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 793 KLKHLQDDNNLLKQQLKDFQnhlnhvvdglvrpeevaARVDELRRKL-KLGTGEMNIHSPSDVLGKSLADLQKQF---SE 868
Cdd:TIGR02168 790 QIEQLKEELKALREALDELR-----------------AELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQIeelSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 869 ILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQAceralearmNFDKRQHEARIQQMENEIHYLQENLKSMEEI 948
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALL---------RSELEELSEELRELESKRSELRRELEELREK 923
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 949 QGLTDLQLQEADEEKERILAQLRElEKKKKLEDAKSQEQvfgldkelkklkkAVATSDKLATAELTIAKDQLKSLhGTVm 1028
Cdd:TIGR02168 924 LAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALEN-------------KIEDDEEEARRRLKRLENKIKEL-GPV- 987
|
810 820 830
....*....|....*....|....*....|....*.
gi 2217375230 1029 kiNQERAEELQE-AERFSRKAAQAArDLTRAEAEIE 1063
Cdd:TIGR02168 988 --NLAAIEEYEElKERYDFLTAQKE-DLTEAKETLE 1020
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1343-2172 |
7.90e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.07 E-value: 7.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1343 EVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEV------------EELHRTVQKRQQQK 1410
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyldylklneERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1411 DFIDGNVESLMTELEI-EKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSL 1489
Cdd:pfam02463 251 EEIESSKQEIEKEEEKlAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1490 LQTESDAEELERRAQE----TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE 1565
Cdd:pfam02463 331 KKEKEEIEELEKELKEleikREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1566 LQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQE 1645
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1646 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRqmskHKTELKNILDMLQ 1725
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV----SATADEVEERQKL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1726 LENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLS 1805
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1806 KEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAV 1885
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1886 NSLQEELANVQdhLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQ 1965
Cdd:pfam02463 727 VQEAQDKINEE--LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1966 EMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQ 2045
Cdd:pfam02463 805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2046 LSEREQQLVEKSGELLALQKEadsmradfsLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLS 2125
Cdd:pfam02463 885 KDELESKEEKEKEEKKELEEE---------SQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 2126 KEQKQENSCIQKEMATIELV-------AQDNHERARRLMKELNQMQYEYTELKK 2172
Cdd:pfam02463 956 EEEEERNKRLLLAKEELGKVnlmaieeFEEKEERYNKDELEKERLEEEKKKLIR 1009
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1340-2230 |
8.61e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 67.76 E-value: 8.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1340 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHH---NIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGN 1416
Cdd:TIGR00606 212 LKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNrlkEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1417 VESLM--TELEIEKSLKHHEDIVDEIE----CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFT--DAKRS 1488
Cdd:TIGR00606 292 MEKVFqgTDEQLNDLYHNHQRTVREKErelvDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRarDSLIQ 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1489 LLQTESDAEELER-----RAQETAVNLVKADQQlRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLT 1563
Cdd:TIGR00606 372 SLATRLELDGFERgpfseRQIKNFHTLVIERQE-DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1564 EELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRaELEKLKSQVTSQQQEMAVLdrqlghkkeelhllqgSMVQAKADL 1643
Cdd:TIGR00606 451 KKQEELKFVIKELQQLEGSSDRILELDQELRKAER-ELSKAEKNSLTETLKKEVK----------------SLQNEKADL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1644 QEALRlGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDM 1723
Cdd:TIGR00606 514 DRKLR-KLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDR 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1724 LQLENHELQGLKLQHDQRVSELEKTQvAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVEC 1803
Cdd:TIGR00606 593 LAKLNKELASLEQNKNHINNELESKE-EQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1804 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1883
Cdd:TIGR00606 672 LTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1884 AVNSLQEELANVQDHLnlakqdllhttkhqdvllSEQTRLQKDISEWANRFEDCQKEEETKQQqlqvLQNEIEENKLKLV 1963
Cdd:TIGR00606 752 KLQKVNRDIQRLKNDI------------------EEQETLLGTIMPEEESAKVCLTDVTIMER----FQMELKDVERKIA 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1964 QQEmmfqrlqkereseeSKLETSKVTLKEQQhqLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTK 2043
Cdd:TIGR00606 810 QQA--------------AKLQGSDLDRTVQQ--VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2044 RQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL---------------------TERKKAEKQVASLKEALKIQ 2102
Cdd:TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSpletflekdqqekeelisskeTSNKKAQDKVNDIKEKVKNI 953
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2103 RSQLEKNLLTINEDSERdssllSKEQKQENsciqkeMATIELVAQDNHERARRLMKELNQMQYEYTELKKQ---MANQKD 2179
Cdd:TIGR00606 954 HGYMKDIENKIQDGKDD-----YLKQKETE------LNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQerwLQDNLT 1022
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 2180 LERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAIlERNENL 2230
Cdd:TIGR00606 1023 LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLI-KRNHVL 1072
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
478-1095 |
1.13e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 478 EIEKAEQQILRATEEFKQLEEAiqlKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLElqmEKQKQEIAGKQKEIKDLQI 557
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEA---KKAEEERNNEEIRKFEEARMAHFARRQAAIKAE---EARKADELKKAEEKKKADE 1294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 558 AIDSLDSKDPKHSHMKAQKSGKEQQLdimNKQYQQLESRLDEILSRI--AKETEEIKDLEEQLTEGQIAANEALKKDLEG 635
Cdd:PTZ00121 1295 AKKAEEKKKADEAKKKAEEAKKADEA---KKKAEEAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 636 VISGLQEYLGTIKGQATQAQ--NECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKElAELESALQEQHEVNASL 713
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADEAK 1450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 714 QQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQ-LEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 792
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKkAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 793 KLKHLQDDNNLLKQQLKdfqnhlnhvVDGLVRPEEVaaRVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILAR 872
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKK---------ADELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 873 SKWERDEAQVRERKLQEEMALQQEKLATGQEEfRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLT 952
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 953 DLQLQEADEEKerilaqlRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSlhgtvmkiNQ 1032
Cdd:PTZ00121 1679 EAKKAEEDEKK-------AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE--------DK 1743
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375230 1033 ERAEELQEAERFSRKAAQAARDLTRAEAEIE-----LLQNLLRQKGEQFRLEMEKTGVGTGANSQVLE 1095
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRkekeaVIEEELDEEDEKRRMEVDKKIKDIFDNFANII 1811
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
438-1157 |
2.12e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 66.40 E-value: 2.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 438 DEQLRNDHMNLRGHTpldTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISeagKDLLYKQL 517
Cdd:pfam12128 229 DIQAIAGIMKIRPEF---TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRT---LDDQWKEK 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 518 SGRLqlvnKLRQEALDLELQMEKQKQEIAGKQKEI---KDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLE 594
Cdd:pfam12128 303 RDEL----NGELSAADAAVAKDRSELEALEDQHGAfldADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 595 SRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEylgtikgqatQAQNECRKLRDEKETLLQRLTE 674
Cdd:pfam12128 379 RRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELRE----------QLEAGKLEFNEEEYRLKSRLGE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 675 VEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEA---ELEARLNLRDAEANQLKEELEKVTRL 751
Cdd:pfam12128 449 LKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKrrdQASEALRQASRRLEERQSALDELELQ 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 752 TQLEQSALQAELEKERQALKNALGKAQFSEekeqensELHAKLKHLQDDNNLLKQQLKDFQNHLNhvVDGLVRPEEVAAR 831
Cdd:pfam12128 529 LFPQAGTLLHFLRKEAPDWEQSIGKVISPE-------LLHRTDLDPEVWDGSVGGELNLYGVKLD--LKRIDVPEWAASE 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 832 vDELRRKLklgtgemnihspsDVLGKSL---ADLQKQFSEILARSKWERDEAQVRE---RKLQEEMALQQEKLATGQEEF 905
Cdd:pfam12128 600 -EELRERL-------------DKAEEALqsaREKQAAAEEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQSE 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 906 RQACERALEARmnfdKRQHEARIQQMENEIHYLQENLKSMEEIQgltDLQLQEADEEKeriLAQLRELEKKKKLEDAKSQ 985
Cdd:pfam12128 666 KDKKNKALAER----KDSANERLNSLEAQLKQLDKKHQAWLEEQ---KEQKREARTEK---QAYWQVVEGALDAQLALLK 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 986 EQVFGLDKELKKLKKAVATS-----DKLATAELTIAK--DQLKSLHGTVMKINQERAEELQ----EAERFSRKAAQAARD 1054
Cdd:pfam12128 736 AAIAARRSGAKAELKALETWykrdlASLGVDPDVIAKlkREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQ 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1055 LTRAEAEIELLQNLLRQKGEQFRLEMEKTGVGTGANSQVLeiEKLNETMERQRTEIARLQNV-LDLTGSDNKGGFENVLE 1133
Cdd:pfam12128 816 LSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQ--VRLSENLRGLRCEMSKLATLkEDANSEQAQGSIGERLA 893
|
730 740
....*....|....*....|....
gi 2217375230 1134 EIAELRREVSYQNDYISSMADPFK 1157
Cdd:pfam12128 894 QLEDLKLKRDYLSESVKKYVEHFK 917
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
534-818 |
2.27e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 534 LELQMEKQKQEIAgKQKEIKDLQIAI--DSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEI 611
Cdd:TIGR02168 205 LERQAEKAERYKE-LKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 612 KDLEEQLTEGQIaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIvamDAEN 691
Cdd:TIGR02168 284 EELQKELYALAN-----EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE---ELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 692 MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELE----KVTRLTQLEQSALQAELEKER 767
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErledRRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 768 QALKNALG-KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHV 818
Cdd:TIGR02168 436 KELQAELEeLEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
433-974 |
5.23e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 65.45 E-value: 5.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 433 KKMEPDEQLRNDH-------MNLRGHTPLDTQLED----KEKKISAAQTRLSELHDEIEKAEQ-------QILRATEEFK 494
Cdd:TIGR00606 543 DKMDKDEQIRKIKsrhsdelTSLLGYFPNKKQLEDwlhsKSKEINQTRDRLAKLNKELASLEQnknhinnELESKEEQLS 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 495 QLEEAI------------------QLKKISE-----AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGK-QK 550
Cdd:TIGR00606 623 SYEDKLfdvcgsqdeesdlerlkeEIEKSSKqramlAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDlQS 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 551 EIKDLQIAIDSLDS----KDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLteGQIAAN 626
Cdd:TIGR00606 703 KLRLAPDKLKSTESelkkKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL--GTIMPE 780
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 627 EALKKDLE---GVISGLQEYLGTIKGQATQAQNECRKLrDEKETLLQRLTEVEQERDQLEIVAMDAENMRKelaelesAL 703
Cdd:TIGR00606 781 EESAKVCLtdvTIMERFQMELKDVERKIAQQAAKLQGS-DLDRTVQQVNQEKQEKQHELDTVVSKIELNRK-------LI 852
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 704 QEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVtrltqleQSALQAELEKERQALKNALGKAQFSEEK 783
Cdd:TIGR00606 853 QDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV-------QSLIREIKDAKEQDSPLETFLEKDQQEK 925
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 784 EQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEvaarvDELRRKlklgtgEMNIHSPSDVLGKSlADLQ 863
Cdd:TIGR00606 926 EELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD-----DYLKQK------ETELNTVNAQLEEC-EKHQ 993
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 864 KQFSEILARSKWERDEAQVRERKLQEEMALQ--QEKLATGQEEFRQaceralearmnFDKRQHEARIQQMENEIHYLQEN 941
Cdd:TIGR00606 994 EKINEDMRLMRQDIDTQKIQERWLQDNLTLRkrENELKEVEEELKQ-----------HLKEMGQMQVLQMKQEHQKLEEN 1062
|
570 580 590
....*....|....*....|....*....|...
gi 2217375230 942 LKSMEEIQGLTDLQLQEADEEKERILAQLRELE 974
Cdd:TIGR00606 1063 IDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1792-2120 |
5.54e-10 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 64.92 E-value: 5.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1792 AESRALQScVECLSKEKEDLQEKCDIWEKKLAQT-KRVLAAAEENSKME--QSNLEKLELN-----------VRKLQQEL 1857
Cdd:PLN02939 150 ARLQALED-LEKILTEKEALQGKINILEMRLSETdARIKLAAQEKIHVEilEEQLEKLRNEllirgateglcVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1858 DQLNRDKLSLHNDISAMQQQLQEKREAVNSLqeelanvqdhLNLAKQDLLHTTKHQDvLLSEQTRLQKDISEWANRFEDC 1937
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVAETEERV----------FKLEKERSLLDASLRE-LESKFIVAQEDVSKLSPLQYDC 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1938 QKEE-ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEE----SKLETSKVTLKEQQHQLEKELTDQKSKldQVL 2012
Cdd:PLN02939 298 WWEKvENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKeanvSKFSSYKVELLQQKLKLLEERLQASDH--EIH 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2013 SKVLAAEERVRTLQeeerwcESLEKTLSQTKRQlsereqqlveksgellALQKEADSMRADF----SLLRNQFLTERKKA 2088
Cdd:PLN02939 376 SYIQLYQESIKEFQ------DTLSKLKEESKKR----------------SLEHPADDMPSEFwsriLLLIDGWLLEKKIS 433
|
330 340 350
....*....|....*....|....*....|..
gi 2217375230 2089 EKQVASLKEALKIQRSQLEKNLLTINEDSERD 2120
Cdd:PLN02939 434 NNDAKLLREMVWKRDGRIREAYLSCKGKNERE 465
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
648-978 |
5.59e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 5.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 648 KGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYE-- 724
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEqe 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 725 --------AELEARLNLRDAEANQLKEELEKVTRLTQLEQ----SALQAELEKERQALKNALGKAQFSEEKEQENSE-LH 791
Cdd:TIGR02169 753 ienvkselKELEARIEELEEDLHKLEEALNDLEARLSHSRipeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEyLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 792 AKLKHLQDDNNLLKQQLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLK-LGTGEMNIHSPSDVLGKSLADLQKQFSEIl 870
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIE---NLNGKKEELEEELEELEAALRdLESRLGDLKKERDELEAQLRELERKIEEL- 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 871 arsKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACEralEARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEE-- 947
Cdd:TIGR02169 909 ---EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE---IPEEELSLEDVQAELQRVEEEIRALEPvNMLAIQEye 982
|
330 340 350
....*....|....*....|....*....|....*
gi 2217375230 948 --IQGLTDLQLQEA--DEEKERILAQLRELEKKKK 978
Cdd:TIGR02169 983 evLKRLDELKEKRAklEEERKAILERIEEYEKKKR 1017
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1806-2241 |
7.33e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.68 E-value: 7.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1806 KEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNV---RKLQQELDQLNRDKLSLHNDISAMQQQLQEKR 1882
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLeehEERREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1883 EAVNSLQEELANVQDHLNlakqDLLHTTKHQDvllSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKL 1962
Cdd:PRK02224 279 EEVRDLRERLEELEEERD----DLLAEAGLDD---ADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1963 VQQEMMFQRLQKERESEESKLETSKVTL---KEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTL 2039
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVedrREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2040 SQTKRQLSEReqqlVEKSGELLAL-------QKEADSMRADFsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKNLLT 2112
Cdd:PRK02224 432 EATLRTARER----VEEAEALLEAgkcpecgQPVEGSPHVET-------IEEDRERVEELEAELEDLEEEVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2113 INEDSERDSSLLSKEQKQENscIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMR 2192
Cdd:PRK02224 501 AEDLVEAEDRIERLEERRED--LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2217375230 2193 TLKSEVKDEIrtslknlnqflpELPADLEAILERNENLEGELESLKENL 2241
Cdd:PRK02224 579 SKLAELKERI------------ESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1819-2052 |
8.76e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 8.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1819 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1898
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1899 LN--LAKQDLLHTTKHQDVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEEnklklvqqemmFQRLQKER 1976
Cdd:COG4942 106 LAelLRALYRLGRQPPLALLLS-----PEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 1977 ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQ 2052
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA---EELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1335-1929 |
1.20e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1335 PEHHNLENEVSRLEDIMQHLKSKKR--EERWMRASKRQSEKEMEELHHN--IDDLLQEKKSLECEVEELH---RTVQKRQ 1407
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEelEEQLETLRSKVAQLELQIASLNneIERLEARLERLEDRRERLQqeiEELLKKL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1408 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTkEKTKNAVEKFTDAKR 1487
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVK 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1488 SLLQTESD--------AEELERRAQ-ETAVNLVKAD--QQLRSLQADAKDLEQHKIKQEEI---------------LKEI 1541
Cdd:TIGR02168 510 ALLKNQSGlsgilgvlSELISVDEGyEAAIEAALGGrlQAVVVENLNAAKKAIAFLKQNELgrvtflpldsikgteIQGN 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1542 NKIVAAKDSDFQCLSKKKEKLTEELQK--------------LQKDIEMAERNEDHHLQVLKESEVL-------------- 1593
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVrpggvitggsaktn 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1594 --LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEEL 1671
Cdd:TIGR02168 670 ssILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1672 SFQKGELNVQISERKTQLTlikqeiekeeenlqvvlrQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVA 1751
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEE------------------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1752 VLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAEsralqscVECLSKEKEDLQEKCDIWEKKLAQTKRVLAA 1831
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELIEELESELEALLNERAS 884
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1832 AEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN-VQDHLNLAKQDLLHTT 1910
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIE 964
|
650
....*....|....*....
gi 2217375230 1911 KHQDVLLSEQTRLQKDISE 1929
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKE 983
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1434-2014 |
1.47e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.50 E-value: 1.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1434 EDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKA 1513
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1514 DQQLRSLQADAKDLEQHKIKQEEILKEIN-------KIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDH---- 1582
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLteikkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknk 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1583 ---------HLQVLKESEVLLQAKRAELEK----LKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA--- 1646
Cdd:TIGR04523 196 llklelllsNLKKKIQKNKSLESQISELKKqnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqke 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1647 LRLGETEVTEKCNHIREVKSLLEELSFQK-----GELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN-- 1719
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNse 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1720 -----ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAES 1794
Cdd:TIGR04523 356 senseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1795 RALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAM 1874
Cdd:TIGR04523 436 IKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1875 QQQLQEKREAVNSLQEELANVQDHLNLAKQDL--LHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1952
Cdd:TIGR04523 516 TKKISSLKEKIEKLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 1953 NEIEENKLKLVQQEMMFQRLQKERES---EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSK 2014
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKakkENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1819-2199 |
1.69e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 1.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1819 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNR------------------DKLSLHNDISAMQQQLQE 1880
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyegyellkEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1881 KREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS-EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIeenk 1959
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL---- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1960 lklvqqemmfQRLQKERESEESKLEtskvtlkeqqhQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEerwCESLEKTL 2039
Cdd:TIGR02169 325 ----------AKLEAEIDKLLAEIE-----------ELEREIEEERKRRDKLTEEYAELKEELEDLRAE---LEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2040 SQTKRQLSEREQQLVEKSGELLALQKEADSMradfsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKnlltiNEDSER 2119
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRL-----------QEELQRLSEELADLNAAIAGIEAKINE-----LEEEKE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2120 DSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQmanQKDLERRQMEISDAMRTLKSEVK 2199
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ---ARASEERVRGGRAVEEVLKASIQ 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
457-798 |
3.10e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 3.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 457 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRAtEEFKqleeAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEAlDLEL 536
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKA-ERYQ----ALLKEKREYEGYELLKEKEALERQKEAIERQLA-SLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 537 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkhshmkAQKSGKEQQLDImNKQYQQLESRLDEILSRIAKETEEIKDLEE 616
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKK--------IKDLGEEEQLRV-KEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 617 QLTEGqiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQE----RDQLEIVAMDAENM 692
Cdd:TIGR02169 323 RLAKL-----EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEfaetRDELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 693 RKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRltQLEQsaLQAELEKERQALKN 772
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW--KLEQ--LAADLSKYEQELYD 473
|
330 340
....*....|....*....|....*..
gi 2217375230 773 ALGK-AQFSEEKEQENSELHAKLKHLQ 798
Cdd:TIGR02169 474 LKEEyDRVEKELSKLQRELAEAEAQAR 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
529-776 |
3.41e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.32 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 529 QEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKET 608
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----------LKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 609 EEIKDLEEQLtegqiaanEALKKDLEGVI-----SGLQEYLGTIKGQ--ATQAQNECRKLRDEKETLLQRLTEVEQERDQ 681
Cdd:COG4942 90 KEIAELRAEL--------EAQKEELAELLralyrLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 682 LEIVAMDAENMRKELAELESALQEQHevnASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL-TQLEQSALQ 760
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER---AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALiARLEAEAAA 238
|
250
....*....|....*.
gi 2217375230 761 AELEKERQALKNALGK 776
Cdd:COG4942 239 AAERTPAAGFAALKGK 254
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
479-919 |
5.01e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 5.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 479 IEKAEQQILRATEEFKQLEEaiQLKKIseagkDLLYKQLSGRLQLVNKLRQEALD-LELQMEKQKQEIAGKQKEIKDLQI 557
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEE--NIERL-----DLIIDEKRQQLERLRREREKAERyQALLKEKREYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 558 AIDSLDskdpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL--EEQLT-EGQIAANEALKKDLE 634
Cdd:TIGR02169 238 QKEAIE----------RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRvKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 635 GVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKELAELESALQEqheVNASLQ 714
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT---EEYAELKEELEDLRAELEE---VDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 715 QTQGDLSAYEAELEarlnlrdaeanQLKEELEKVTRltqlEQSALQAELEKerqalknalgkaqfseeKEQENSELHAKL 794
Cdd:TIGR02169 382 ETRDELKDYREKLE-----------KLKREINELKR----ELDRLQEELQR-----------------LSEELADLNAAI 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 795 KHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDELRRKLKlgtgemNIHSPSDVLGKSLADLQKQFSEILARSK 874
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKL---EQLAADLSKYEQELY------DLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 2217375230 875 WERDEaqVRERKLQEEMALQQEKLATGQ--------EEFRQACERALEARMNF 919
Cdd:TIGR02169 501 ASEER--VRGGRAVEEVLKASIQGVHGTvaqlgsvgERYATAIEVAAGNRLNN 551
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1376-2240 |
7.79e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.53 E-value: 7.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1376 EELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDgnveslmteleiekslkhheDIVDEIECIEKTLLKRRSELR 1455
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELII--------------------DLEELKLQELKLKEQAKKALE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1456 EADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQE 1535
Cdd:pfam02463 212 YYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1536 EILKEINKIVAAK-DSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ----VTS 1610
Cdd:pfam02463 292 AKEEEELKSELLKlERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLqeklEQL 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1611 QQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSfQKGELNVQISERKTQLT 1690
Cdd:pfam02463 372 EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE-EEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1691 LIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQK 1770
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1771 GEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNV 1850
Cdd:pfam02463 531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1851 RKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQE----ELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKD 1926
Cdd:pfam02463 611 ATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKgvslEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1927 ISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEM----MFQRLQKERESEESKLETSKVTLKEQQHQLEKELT 2002
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQdkinEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2003 DQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL 2082
Cdd:pfam02463 771 LKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2083 TERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQ 2162
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEIL 930
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375230 2163 MQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFlpelpADLEAILERNENLEGELESLKEN 2240
Cdd:pfam02463 931 LKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAI-----EEFEEKEERYNKDELEKERLEEE 1003
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1355-2056 |
1.59e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.37 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1355 KSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHE 1434
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1435 DIVDEIECIEKTLLKRRSEL---READRLLAEAESelsctkektknavekftdakrsLLQTESDAEELERRAQETAVNLV 1511
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERInraRKAAPLAAHIKA----------------------VTQIEQQAQRIHTELQSKMRSRA 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1512 KADQQLRSLQADAKDLEQHKIKQEEILKE--INKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEmaernedhhlqVLKE 1589
Cdd:TIGR00618 325 KLLMKRAAHVKQQSSIEEQRRLLQTLHSQeiHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKT-----------TLTQ 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1590 SEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALrlgeTEVTEKCNHIREVKSLLE 1669
Cdd:TIGR00618 394 KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTA----QCEKLEKIHLQESAQSLK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1670 ELSFQKGelnvqiserktqltlikqeiekeeeNLQVVLRQMSKHKTELKNILDMLQLENHELQGLKL---QHDQRVSELE 1746
Cdd:TIGR00618 470 EREQQLQ-------------------------TKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIhpnPARQDIDNPG 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1747 KTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEkcdiwekklaQTK 1826
Cdd:TIGR00618 525 PLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN----------ITV 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1827 RVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLnrdklslhnDISAMQQQLQEKREavnslQEELANVQDHLNLAKQDL 1906
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQ---------DVRLHLQQCSQELA-----LKLTALHALQLTLTQERV 660
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1907 LHT---TKHQDVLLSEQTRLQKDISEWANRFEDCQKEE-ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESK 1982
Cdd:TIGR00618 661 REHalsIRVLPKELLASRQLALQKMQSEKEQLTYWKEMlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDA 740
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 1983 LETSkvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEK 2056
Cdd:TIGR00618 741 LNQS---LKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1599-1959 |
2.58e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 2.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1599 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEkcnHIREVKSLLEELSFQKGEL 1678
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE---LLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1679 NvQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTEL-KNILDMLQLENHELQGlklqhdqrvsELEKTQVAVLEEKL 1757
Cdd:TIGR02169 247 A-SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEA----------EIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1758 ELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSK 1837
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1838 MEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLlhttkhqDVLL 1917
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-------SKYE 468
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2217375230 1918 SEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK 1959
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
454-1104 |
2.99e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 2.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 454 LDTQLEDKEKK-----ISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnklr 528
Cdd:PRK02224 192 LKAQIEEKEEKdlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLE--------------------------- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 529 qealdlelqmekqkqEIAGKQKEIKDLQIAIDSLDSKdpkhshmkaqKSGKEQQLDIMNKQYQQLESRLDEILSRIaket 608
Cdd:PRK02224 245 ---------------EHEERREELETLEAEIEDLRET----------IAETEREREELAEEVRDLRERLEELEEER---- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 609 EEIKDlEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMD 688
Cdd:PRK02224 296 DDLLA-EAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE---SE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 689 AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELekvtrltqleqsalqAELEKERQ 768
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE---------------AELEATLR 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 769 ALKNALGKAQ----------------------FSEEKEQENSELHAKLkhlqddnnllkQQLKDFQNHLNHVVDGLVRPE 826
Cdd:PRK02224 437 TARERVEEAEalleagkcpecgqpvegsphveTIEEDRERVEELEAEL-----------EDLEEEVEEVEERLERAEDLV 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 827 EVAARVDELRRKLKLGTGEMNIHSPS-DVLGKSLADLQKQFSEILARSKWERDEAQvrerKLQEEMALQQEKLATGQEEf 905
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETiEEKRERAEELRERAAELEAEAEEKREAAA----EAEEEAEEAREEVAELNSK- 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 906 RQACERALEARMNFDKRQheARIQQMENEIHYLQENLKSMEEIQgltdlqlqeaDEEKERiLAQLRelEKKKKLEDAKSQ 985
Cdd:PRK02224 581 LAELKERIESLERIRTLL--AAIADAEDEIERLREKREALAELN----------DERRER-LAEKR--ERKRELEAEFDE 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 986 EQVFGLDKELKKLKKAVATSDKlATAELTIAKDQLKSLHGTVmKINQERAEELQEaerfsRKAAQAAR--DLTRAEAEIE 1063
Cdd:PRK02224 646 ARIEEAREDKERAEEYLEQVEE-KLDELREERDDLQAEIGAV-ENELEELEELRE-----RREALENRveALEALYDEAE 718
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 2217375230 1064 LLQNLLRqkgeQFRLEMEKTGVGTgansqvLEIeKLNETME 1104
Cdd:PRK02224 719 ELESMYG----DLRAELRQRNVET------LER-MLNETFD 748
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1601-2251 |
3.82e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 3.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1601 LEKLKSQVTSQQQEMAvlDRQLGHKKEELHLLQGSMvqakaDLQEALRLGETEVTEKCNHIREVKSLLEELsfqKGELNV 1680
Cdd:pfam15921 80 LEEYSHQVKDLQRRLN--ESNELHEKQKFYLRQSVI-----DLQTKLQEMQMERDAMADIRRRESQSQEDL---RNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1681 QISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLqLENHELQGLKLQHDQRVSELEKTQVAvleeklelE 1760
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSIL-VDFEEASGKKIYEHDSMSTMHFRSLG--------S 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1761 NLQQISQQQKGEIEWQKQLLERDKREIERMTAESralQSCVECLskekedLQEKCDIWEKKLAQTKRVLAAAEENSKMEQ 1840
Cdd:pfam15921 221 AISKILRELDTEISYLKGRIFPVEDQLEALKSES---QNKIELL------LQQHQDRIEQLISEHEVEITGLTEKASSAR 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1841 SNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQ-EKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSE 1919
Cdd:pfam15921 292 SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRsELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1920 QTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNE-------IEENKLKLVQQEMMFQRLQ---KERESE-ESKLETSKV 1988
Cdd:pfam15921 372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEallKAMKSEcQGQMERQMA 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1989 TLKEQQHQLEK--ELTDQKSKLDQVLSKVlaaeerVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKe 2066
Cdd:pfam15921 452 AIQGKNESLEKvsSLTAQLESTKEMLRKV------VEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS- 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2067 adsmRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENScIQKEMATIElva 2146
Cdd:pfam15921 525 ----RVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGA-MQVEKAQLE--- 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2147 qdnherarrlmKELNQMQYEYTELKKqMANQKDLERRQME--ISD-----------------AMRTLKSEvKDEIRTSLK 2207
Cdd:pfam15921 597 -----------KEINDRRLELQEFKI-LKDKKDAKIRELEarVSDlelekvklvnagserlrAVKDIKQE-RDQLLNEVK 663
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2217375230 2208 NLNQFLPELPADLEAILERNENLEGELESLKENLPFTMNEGPFE 2251
Cdd:pfam15921 664 TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSE 707
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
457-679 |
4.52e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 4.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 457 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeaiqlKKISEAGKDLlyKQLSGRLqlvNKLRQEALDLEL 536
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----RRIAALARRI--RALEQEL---AALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 537 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE 616
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDF---LDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375230 617 QLT------EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 679
Cdd:COG4942 168 ELEaeraelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-1112 |
4.73e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.83 E-value: 4.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELPLSWFLAGPFLLILY 349
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 350 SSLKLKQKTIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRykrnmfaTESYIIDSAQA 429
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER-------RKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 430 VQIKKMEPDEQLRNDHMNLrghTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAG 509
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEI---EELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 510 KDLLYKQLSGRLQLVNKLRQEALDL---ELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIM 586
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLlkeEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 587 NKQYQQLESRLDEILSRIAKETEEIKDLEEQ-LTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEK 665
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARsGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 666 ETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEEL 745
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 746 EKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRP 825
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKL 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 826 EEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEF 905
Cdd:pfam02463 716 KLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEK 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 906 RQACERALEARMNFDKRQ--HEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAK 983
Cdd:pfam02463 796 LKAQEEELRALEEELKEEaeLLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLK 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 984 SQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIE 1063
Cdd:pfam02463 876 EEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 2217375230 1064 LLQNLLRQKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIAR 1112
Cdd:pfam02463 956 EEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
558-789 |
4.82e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.92 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 558 AIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQiAANEALKKDLEGVI 637
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE-AEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 638 SGLQE------YLGTIKGQATQAqnecrklrdekeTLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQhevNA 711
Cdd:COG3883 93 RALYRsggsvsYLDVLLGSESFS------------DFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAK---LA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375230 712 SLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSE 789
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1373-2229 |
5.70e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 5.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1373 KEMEEL--HHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESL----MTELEIEKSLKHHEDIVDEIECIEKT 1446
Cdd:PTZ00121 1027 EKIEELteYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYkdfdFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1447 LLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSllqTESDAEELERRAQET-AVNLVKADQQLRSLQADAK 1525
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA---EDAKRVEIARKAEDArKAEEARKAEDAKKAEAARK 1183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1526 DLEQHKIKQEEILKEINKIVAAKDSDfqclskkKEKLTEELQKLQ--KDIEMAERNEdhhlQVLKESEvllQAKRAELEK 1603
Cdd:PTZ00121 1184 AEEVRKAEELRKAEDARKAEAARKAE-------EERKAEEARKAEdaKKAEAVKKAE----EAKKDAE---EAKKAEEER 1249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1604 LKSQVTSQQQEMAV--LDRQLGHKKEELHllQGSMVQAKADLQEALRLGETEVTEKCNHIR----------EVKSLLEEL 1671
Cdd:PTZ00121 1250 NNEEIRKFEEARMAhfARRQAAIKAEEAR--KADELKKAEEKKKADEAKKAEEKKKADEAKkkaeeakkadEAKKKAEEA 1327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1672 SFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMS---KHKTELKNILDMLQLENHE------LQGLKLQHDQRV 1742
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaeKKKEEAKKKADAAKKKAEEkkkadeAKKKAEEDKKKA 1407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1743 SELEKTQVAVLEEKLELENLQQI--SQQQKGEIEWQKQLLERDKREIERMTAES---RALQSCVECLSKEKEDLQEKCDI 1817
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEakkKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1818 WEKKLAQTKRvlaAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQ----EELA 1893
Cdd:PTZ00121 1488 AKKKAEEAKK---KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEElkkaEEKK 1564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1894 NVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDI----SEWANRFEDCQKEEETKQQQLQVLQneiEENKLKLVQQEMMF 1969
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMklyeEEKKMKAEEAKKAEEAKIKAEELKK---AEEEKKKVEQLKKK 1641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1970 QRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSER 2049
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2050 EQQLVEKSGELLALQKEADSmradfsllrnqfltERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSL---LSK 2126
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEE--------------DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIeeeLDE 1787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2127 EQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSL 2206
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE 1867
|
890 900
....*....|....*....|...
gi 2217375230 2207 KNLNQFLPELPADLEAILERNEN 2229
Cdd:PTZ00121 1868 ADFNKEKDLKEDDEEEIEEADEI 1890
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
460-777 |
5.96e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 5.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 460 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkiseagkdllykqlsgrlqlvnklRQEALDLELQME 539
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE-----------------------------RREALQRLAEYS 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 540 KQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLT 619
Cdd:COG4913 658 WDEIDVASAEREIAELEAELERLDASSDDLAAL-------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 620 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQA------QNECRKLRDEKETLLQRLT-------------------- 673
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERelrenlEERIDALRARLNRAEEELEramrafnrewpaetadldad 810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 674 -----EVEQERDQLE----------IVAMDAENMRKELAELESALQEQ--------HEVNASLQQTQ-GDLSAYEAELEA 729
Cdd:COG4913 811 leslpEYLALLDRLEedglpeyeerFKELLNENSIEFVADLLSKLRRAireikeriDPLNDSLKRIPfGPGRYLRLEARP 890
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2217375230 730 RlnlRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKA 777
Cdd:COG4913 891 R---PDPEVREFRQELRAVTSGASLFDEELSEARFAALKRLIERLRSE 935
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
442-1141 |
6.46e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 6.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 442 RNDHMN-LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ----LKKISEAGK-DLLYK 515
Cdd:PTZ00121 1062 AKAHVGqDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaedARKAEEARKaEDARK 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 516 QLSGRLQLVNKLRQEALDLElqmEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHmKAQKSGKEQQLDIMNKQYQQLES 595
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAE---DARKAEEARKAEDAKKAEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEA 1217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 596 RLDEILSRI--AKETEEI-KDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 672
Cdd:PTZ00121 1218 RKAEDAKKAeaVKKAEEAkKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 673 TEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARlnlrdAEANQLKEELEKVTRLT 752
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA-----ADEAEAAEEKAEAAEKK 1372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 753 QLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQnhlnhvVDGLVRPEEVAARV 832
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK------ADEAKKKAEEAKKA 1446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 833 DELRRKLKLGTGEMNIHSPSDVLGKSlADLQKQFSEilaRSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACE-- 910
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKA-DEAKKKAEE---AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEak 1522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 911 RALEARMNFDKRQHEARIQQMENEihyLQENLKSMEEIQGLTDL-QLQEADEEKERILAQLRELEKKKKLEDAKSQE--Q 987
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKK---KADELKKAEELKKAEEKkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvmK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 988 VFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQE--RAEELQEAERFSR-KAAQAAR----DLTRAEa 1060
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEkkKAEELKKAEEENKiKAAEEAKkaeeDKKKAE- 1678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1061 EIELLQNLLRQKGEQFRLEMEKTgvgtganSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRR 1140
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEA-------KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
|
.
gi 2217375230 1141 E 1141
Cdd:PTZ00121 1752 D 1752
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1340-1994 |
7.38e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.21 E-value: 7.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1340 LENEVSRLEDIMQHLKSKKRE--ERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV-----QKRQQQKDF 1412
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNkiELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqeQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1413 ID--GNVESLMTEL--EIEKSLKHHEDivdEIECIEKTLLKRRSELREA------------------DRLLAE---AESE 1467
Cdd:pfam15921 316 MRqlSDLESTVSQLrsELREAKRMYED---KIEELEKQLVLANSELTEArterdqfsqesgnlddqlQKLLADlhkREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1468 LSCTKEKTKNAVEKFTDAKRSL--LQTESDAEELERRAQETAVNLVKAD------QQLRSLQAdakdleqhkikQEEILK 1539
Cdd:pfam15921 393 LSLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSEcqgqmeRQMAAIQG-----------KNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1540 EINKIVAAKDSDFQCLskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLd 1619
Cdd:pfam15921 462 KVSSLTAQLESTKEML----RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL- 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1620 rqlghKKEELHLLQgsmVQAKAdlqEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTlikqeieke 1699
Cdd:pfam15921 537 -----KNEGDHLRN---VQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE--------- 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1700 eenlqvvlRQMSKHKTELKnildmlqlenhELQGLKLQHDQRVSELEKtqvavleeklelenlqQISQQQKGEIEWQKQL 1779
Cdd:pfam15921 597 --------KEINDRRLELQ-----------EFKILKDKKDAKIRELEA----------------RVSDLELEKVKLVNAG 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1780 LERdKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLaqtkrvlaaaEENSKMEQSNLEKLELNVRKLQQELDQ 1859
Cdd:pfam15921 642 SER-LRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF----------RNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1860 LNRDKLSLHND-------ISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWAN 1932
Cdd:pfam15921 711 TRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG 790
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 1933 RFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRlqKERESEESKLETSkVTLKEQQ 1994
Cdd:pfam15921 791 ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR--QEQESVRLKLQHT-LDVKELQ 849
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
457-912 |
7.67e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 7.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 457 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDL 534
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALeaELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 535 ELQMEKQKQEIAGKQKEIKDLqiaidsldskdpkhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 614
Cdd:COG4717 162 EEELEELEAELAELQEELEEL----------------LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 615 EEQLTEGQiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQnecrkLRDEKETLLQRLTEVEQERdqLEIVAMDAENMRK 694
Cdd:COG4717 226 EEELEQLE---NELEAAALEERLKEARLLLLIAAALLALLG-----LGGSLLSLILTIAGVLFLV--LGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 695 ELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKV-TRLTQLEQSALQAELEKERQALKNA 773
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELqELLREAEELEEELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 774 LGKAQFSEEKE-QENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVrPEEVAARVDELRRKLKLGTGEMnihsps 852
Cdd:COG4717 376 LAEAGVEDEEElRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEEL------ 448
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 853 DVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQ-EEMALQQEKLATGQEEFRQACERA 912
Cdd:COG4717 449 EELREELAELEAELEQLEEDGELAELLQELEELKAElRELAEEWAALKLALELLEEAREEY 509
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1828-2069 |
7.87e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.15 E-value: 7.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1828 VLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLL 1907
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1908 HTTKHQ----------DVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKlklvqqemmfqRLQKERE 1977
Cdd:COG3883 90 ERARALyrsggsvsylDVLLG-----SESFSDFLDRLSALSKIADADADLLEELKADKAELE-----------AKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1978 SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKS 2057
Cdd:COG3883 154 AKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250
....*....|..
gi 2217375230 2058 GELLALQKEADS 2069
Cdd:COG3883 234 AAAAAAAAAAAS 245
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1480-2286 |
8.68e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 8.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1480 EKFTDAKRSLLQTESDAEELERRAQETAVNLVK-ADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAK---DSDFQCL 1555
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERlRREREKAERYQALLKEKREYEGYELLKEKEALERQKeaiERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1556 SKKKEKLTEELQKLQKDIEMAERN-EDHHLQVLKESEVLLQAKRAELEKLKSQVTSqqqemavLDRQLGHKKEELHllqg 1634
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIAS-------LERSIAEKERELE---- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1635 smvqakaDLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHK 1714
Cdd:TIGR02169 319 -------DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1715 TEL---KNILDMLQLENHELQGLKLQHDQRVSELEktqvavleeklelenlqqisQQQKGEIEWQKQLLERDKREIERMT 1791
Cdd:TIGR02169 392 EKLeklKREINELKRELDRLQEELQRLSEELADLN--------------------AAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1792 AESRALQSCVECLSKEKE---DLQEKCDIWEKKLAQTKRVLAAAEEnskmEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1868
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQelyDLKEEYDRVEKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKASIQGVHGTV 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1869 NDISAMQQQLQEKRE--AVNSLQ----EELANVQDHLNLAKQ------DLLHTTKHQDVLLSEQTRLQKDISEWANRFED 1936
Cdd:TIGR02169 528 AQLGSVGERYATAIEvaAGNRLNnvvvEDDAVAKEAIELLKRrkagraTFLPLNKMRDERRDLSILSEDGVIGFAVDLVE 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1937 CQKEEETKQQQL---QVLQNEIEENKLKLVQQEMM----------------------FQRLQKERESEESKLETSKVTLK 1991
Cdd:TIGR02169 608 FDPKYEPAFKYVfgdTLVVEDIEAARRLMGKYRMVtlegelfeksgamtggsraprgGILFSRSEPAELQRLRERLEGLK 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1992 EQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMR 2071
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI---EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2072 ADFSLLrnqflterkkaEKQVASLKEALkiqrsqleknlltinEDSERDsslLSKEQKQEnscIQKEMATIELVAQDNHE 2151
Cdd:TIGR02169 765 ARIEEL-----------EEDLHKLEEAL---------------NDLEAR---LSHSRIPE---IQAELSKLEEEVSRIEA 812
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2152 RARRLMKELNQMQYEYTELKKQMANqkdLERRQMEISDAMRTLKSEVkDEIRTSLKNLNQFLPELPADLEAILERNENLE 2231
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQE---LQEQRIDLKEQIKSIEKEI-ENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 2232 GELESLKENLpftmneGPFEEKLNfsqvhimdehwRGEALREKLRHREDRLKAQL 2286
Cdd:TIGR02169 889 KERDELEAQL------RELERKIE-----------ELEAQIEKKRKRLSELKAKL 926
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
549-1141 |
1.01e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.74 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 549 QKEIKDLQIAIDSLDSK----DPKHSHMKAQKSGKEQQLDimnkqyqqlesRLDEILSRIAKETEEIKDLEEQLTEGQ-- 622
Cdd:PRK02224 198 EKEEKDLHERLNGLESElaelDEEIERYEEQREQARETRD-----------EADEVLEEHEERREELETLEAEIEDLRet 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 623 IAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaenmRKELAELESA 702
Cdd:PRK02224 267 IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL----------RDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 703 LQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrlTQLEQSALQAELEKERQALKNA---LGKAQ- 778
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED----RREEIEELEEEIEELRERFGDApvdLGNAEd 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 779 FSEEKEQENSELHAKLKHLQDDnnllkqqlkdfqnhlnhvvdgLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVlgKS 858
Cdd:PRK02224 413 FLEELREERDELREREAELEAT---------------------LRTARERVEEAEALLEAGKCPECGQPVEGSPHV--ET 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 859 LADLQKQFSEILA-RSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEarmnfdkrQHEARIQQMENEIHY 937
Cdd:PRK02224 470 IEEDRERVEELEAeLEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIA--------ERRETIEEKRERAEE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 938 LQENLKSMEEiqgltdlqlqEADEEKERilAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDklatAELTIAK 1017
Cdd:PRK02224 542 LRERAAELEA----------EAEEKREA--AAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL----AAIADAE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1018 DQLKSLhgtvmkinQERAEELQEAERFSRKAAQAARDLTRA------EAEIELLQNLlRQKGEQFrlemektgvgtgans 1091
Cdd:PRK02224 606 DEIERL--------REKREALAELNDERRERLAEKRERKREleaefdEARIEEARED-KERAEEY--------------- 661
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1092 qvleIEKLNETMERQRTEIARLQNVLdltgsdnkGGFENVLEEIAELRRE 1141
Cdd:PRK02224 662 ----LEQVEEKLDELREERDDLQAEI--------GAVENELEELEELRER 699
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1339-1893 |
1.23e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1339 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnve 1418
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1419 slmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESElsctKEKTKNAVEKFTDAKRSLLQTESDAEE 1498
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1499 LER-RAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKdSDFQCLSKKKEKLTEELQKLQKDIEMAE 1577
Cdd:PRK03918 364 YEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI-GELKKEIKELKKAIEELKKAKGKCPVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1578 R--NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsMVQAKADLQEALRLGETEVT 1655
Cdd:PRK03918 443 RelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKYNLEEL 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1656 EKCNhiREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEkeeenLQVVLRQMSKHKTELKNILDMLQLENHElqglk 1735
Cdd:PRK03918 521 EKKA--EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE-----LEKKLDELEEELAELLKELEELGFESVE----- 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1736 lQHDQRVSELEKTQVAVLEEKLElenlqqisqqqKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKC 1815
Cdd:PRK03918 589 -ELEERLKELEPFYNEYLELKDA-----------EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1816 DIWE-----KKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdISAMQQQLQEKREAVNSLQE 1890
Cdd:PRK03918 657 SEEEyeelrEEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKA 735
|
...
gi 2217375230 1891 ELA 1893
Cdd:PRK03918 736 LLK 738
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
580-788 |
1.27e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.95 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 580 EQQLDIMNKQYQQLESRLDEILSR--IAKETEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 655
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSEleSQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 656 NEcrklrDEKETLLQRLTEVEQERDQLEIVAMDA----ENMRKELAELESALQEQhevnasLQQTQGDLSAYEAELEARL 731
Cdd:COG3206 261 QS-----PVIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLQQE------AQRILASLEAELEALQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217375230 732 NLRDAEANQLKEELEKVTRLtQLEQSALQAELEKERQALKNALGKAQFSEEKEQENS 788
Cdd:COG3206 330 ASLQAQLAQLEARLAELPEL-EAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
650-1079 |
1.32e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 650 QATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESA---LQEQHEVNASLQQTQGDLSAYEAE 726
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 727 LEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNAlgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQ 806
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL-------EELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 807 QLKDFQNHLnhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQK----------QFSEILARSKWE 876
Cdd:COG4717 228 ELEQLENEL--------EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 877 RDEAQVRERKLQEEMALQQEKLATGQEEFRqaCERALEARMNFDKRQHEARIQQMENEIHYLQENLK---SMEEIQGLTD 953
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 954 LQLQEADEEKERILAQLREL-EKKKKLEDAKSQ-EQVFGLDKELKKLKKAVATSDKLATAELTIA--KDQLKSLHGTVMK 1029
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYqELKEELEELEEQlEELLGELEELLEALDEEELEEELEELEEELEelEEELEELREELAE 457
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 1030 INQ-----ERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLE 1079
Cdd:COG4717 458 LEAeleqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1337-2241 |
2.03e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1337 HHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKK----SLECEVEELHRTVQKRQQQKDF 1412
Cdd:pfam01576 35 HQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEersqQLQNEKKKMQQHIQDLEEQLDE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1413 IDGNVESLMTE-LEIEKSLKHHEDIVDEIECIEKTLLKRRSELRE-----ADRLLAEAESELSCTKEKTKNAVeKFTDAK 1486
Cdd:pfam01576 115 EEAARQKLQLEkVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEErisefTSNLAEEEEKAKSLSKLKNKHEA-MISDLE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1487 RSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1566
Cdd:pfam01576 194 ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQI 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1567 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA 1646
Cdd:pfam01576 274 SELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQK 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1647 LRLGETEVTEKCNHIREVKSLLEE----LSFQKGELNVQI---SERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN 1719
Cdd:pfam01576 354 HTQALEELTEQLEQAKRNKANLEKakqaLESENAELQAELrtlQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1720 ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQS 1799
Cdd:pfam01576 434 KLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1800 CVEclsKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQ 1879
Cdd:pfam01576 514 NVE---RQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLD 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1880 EKREAVNSLQEelanvqdhlnlaKQdllhttKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK 1959
Cdd:pfam01576 591 HQRQLVSNLEK------------KQ------KKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAK 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1960 LKLvqqemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaEERVRTLQEEERWCESLEKTL 2039
Cdd:pfam01576 653 EEL-------ERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQL---EELEDELQATEDAKLRLEVNM 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2040 ----SQTKRQLSEREQQLVEKSGELLALQKEADSMradfsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKNLLTINE 2115
Cdd:pfam01576 723 qalkAQFERDLQARDEQGEEKRRQLVKQVRELEAE-----------LEDERKQRAQAVAAKKKLELDLKELEAQIDAANK 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2116 DSERDSSLLSKEQKQ----ENSCIQKEMATIELVAQ--DNHERARRLMKELNQMQYEYT---ELKKQMANQKDLERRQME 2186
Cdd:pfam01576 792 GREEAVKQLKKLQAQmkdlQRELEEARASRDEILAQskESEKKLKNLEAELLQLQEDLAaseRARRQAQQERDELADEIA 871
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 2187 ISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2241
Cdd:pfam01576 872 SGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTEL 926
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1776-2018 |
2.10e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1776 QKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQ 1855
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1856 ELDQLnRDKLSlhNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQdllhttkhqdvLLSEQTRLQKDISEWANRFE 1935
Cdd:COG4942 98 ELEAQ-KEELA--ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----------LAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1936 DCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKV 2015
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
...
gi 2217375230 2016 LAA 2018
Cdd:COG4942 244 PAA 246
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
535-780 |
2.15e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.61 E-value: 2.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 535 ELQMEKQKQEIAGKQKEIKDLQIAIDSLDskdpkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 614
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQ-----------------AELEELNEEYNELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 615 EEQLTEGQIAANEALK------------------KDLEGVISGLqEYLGTIkgqATQAQNECRKLRDEKETLLQRLTEVE 676
Cdd:COG3883 78 EAEIEERREELGERARalyrsggsvsyldvllgsESFSDFLDRL-SALSKI---ADADADLLEELKADKAELEAKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 677 QERDQLEIVAMDAENMRKelaELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQ 756
Cdd:COG3883 154 AKLAELEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
250 260
....*....|....*....|....
gi 2217375230 757 SALQAELEKERQALKNALGKAQFS 780
Cdd:COG3883 231 AAAAAAAAAAAAAASAAGAGAAGA 254
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
457-751 |
2.27e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 457 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLlyKQLSGRLQLVNKLRQE----AL 532
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRiearLR 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 533 DLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIK 612
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDL----------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 613 DLEEQltegqiaanealKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVA---MDA 689
Cdd:TIGR02169 886 DLKKE------------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPeeeLSL 953
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 690 ENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL 751
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
148-205 |
2.92e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 49.45 E-value: 2.92e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 148 KLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEIEHI-PVWLGKkLKSLRVLNLKGNKI 205
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
580-953 |
4.08e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 4.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 580 EQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTE-GQIAANEALKKDLEGVISGLQEyLGTIKGQATQAQNEC 658
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlQRLAEYSWDEIDVASAEREIAE-LEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 659 RKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTqgdlsAYEAELEARL--NLRDA 736
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL-----ELRALLEERFaaALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 737 EANQLKEELEKvtrltqlEQSALQAELEKERQALKNALgkAQFSEEKEQENSELHAKLkhlqDDNNllkqqlkDFQNHLN 816
Cdd:COG4913 763 VERELRENLEE-------RIDALRARLNRAEEELERAM--RAFNREWPAETADLDADL----ESLP-------EYLALLD 822
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 817 HVV-DGLVRPEEvaarvdELRRKLKlgtgEMNIHSPSDVLGK---SLADLQKQFSEI---LARSKWERDEA---QVRERK 886
Cdd:COG4913 823 RLEeDGLPEYEE------RFKELLN----ENSIEFVADLLSKlrrAIREIKERIDPLndsLKRIPFGPGRYlrlEARPRP 892
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375230 887 LQEEmalqqeklatgqEEFRQACERALEARMNFDKRQHEARIQQMENEIHYL--QENLKSMEEIQGLTD 953
Cdd:COG4913 893 DPEV------------REFRQELRAVTSGASLFDEELSEARFAALKRLIERLrsEEEESDRRWRARVLD 949
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
454-621 |
4.12e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.39 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 454 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRqEALD 533
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 534 LELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 613
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEEL----------EEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*...
gi 2217375230 614 LEEQLTEG 621
Cdd:COG1579 164 EREELAAK 171
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
446-837 |
4.24e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 55.73 E-value: 4.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 446 MNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEqqilratEEFKQLEEAIQlkkiseagkdllykQLSGRLQLV- 524
Cdd:PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELN-------EAESDLEQDYQ--------------AASDHLNLVq 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 525 NKLRQ---------EALDLELQMEKQKQEIAGKQKEIKDLQI----AIDSLDSkdpkhshMKAQKSGKEQQLDIMNK--- 588
Cdd:PRK04863 342 TALRQqekieryqaDLEELEERLEEQNEVVEEADEQQEENEAraeaAEEEVDE-------LKSQLADYQQALDVQQTrai 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 589 QYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEylgtIKGQATQAQNECRKLRDE-- 664
Cdd:PRK04863 415 QYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEllSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEvs 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 665 KETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSA---YEAELEARLNLRDAEANQL 741
Cdd:PRK04863 491 RSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKnldDEDELEQLQEELEARLESL 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 742 KEELEKVtRLTQLEQSALQAELEKERQALknalgkaqfsEEKEQENSELHAKLKHLQD---DNNLLKQQLKDF-QNHLNH 817
Cdd:PRK04863 571 SESVSEA-RERRMALRQQLEQLQARIQRL----------AARAPAWLAAQDALARLREqsgEEFEDSQDVTEYmQQLLER 639
|
410 420
....*....|....*....|
gi 2217375230 818 VVDGLVRPEEVAARVDELRR 837
Cdd:PRK04863 640 ERELTVERDELAARKQALDE 659
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
459-761 |
5.38e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.34 E-value: 5.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 459 EDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkiseagkdllykqlsgRLQLVNKL----------- 527
Cdd:COG3096 832 PDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKE---------------------QLQLLNKLlpqanlladet 890
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 528 ---RQEALDLEL-QMEKQKQEIAGKQKEIKDLQIAIDSLDSkDPkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSR 603
Cdd:COG3096 891 ladRLEELREELdAAQEAQAFIQQHGKALAQLEPLVAVLQS-DP-------------EQFEQLQADYLQAKEQQRRLKQQ 956
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 604 IAKETEEIK--------DLEEQLTEGQiAANEALKKDLEGV---ISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 672
Cdd:COG3096 957 IFALSEVVQrrphfsyeDAVGLLGENS-DLNEKLRARLEQAeeaRREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTL 1035
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 673 TEVEQERDQLEIVAmDAEnmrkelAElESALQEQHEVNASLQQTQGDLSayeaELEARLNLRDAEANQLKEELEKVTR-L 751
Cdd:COG3096 1036 QELEQELEELGVQA-DAE------AE-ERARIRRDELHEELSQNRSRRS----QLEKQLTRCEAEMDSLQKRLRKAERdY 1103
|
330
....*....|
gi 2217375230 752 TQLEQSALQA 761
Cdd:COG3096 1104 KQEREQVVQA 1113
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
672-985 |
5.46e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 5.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 672 LTEVEQERDQLEIVAMDAENMRKELAELESA-----LQEQHEVNASLQQTQGDLSAYEAELEAR------LNLRDAEANQ 740
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKREYegyelLKEKEALERQKEAIERQLASLEEELEKLteeiseLEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 741 LKEEL-EKVTRLTQLEQSALQAELEKERQALKNALGKAqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvv 819
Cdd:TIGR02169 273 LLEELnKKIKDLGEEEQLRVKEKIGELEAEIASLERSI---AEKERELEDAEERLAKLEAEIDKLLAEIEELEREI---- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 820 dglvrpEEVAARVDELRRKLKlgtgemnihSPSDVLGKSLADLQkQFSEILARSKWERDEAQVRERKLQEEMALQQEKLA 899
Cdd:TIGR02169 346 ------EEERKRRDKLTEEYA---------ELKEELEDLRAELE-EVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 900 TGQEEFRQACERALEARMnfDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEkkKKL 979
Cdd:TIGR02169 410 RLQEELQRLSEELADLNA--AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE--KEL 485
|
....*.
gi 2217375230 980 EDAKSQ 985
Cdd:TIGR02169 486 SKLQRE 491
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
126-181 |
5.81e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 48.29 E-value: 5.81e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 126 KLEVLNLSYNLIGKIEK--LDKLLKLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEI 181
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1336-1749 |
5.89e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.11 E-value: 5.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1336 EHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDD---LLQEKKSLECEVEELHRTVQK-----RQ 1407
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEdekLLDEKKQFEKIAEELKGKEQElifllQA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1408 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEiecIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1487
Cdd:pfam05483 448 REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE---LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIN 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1488 SLLQTESDAEELErRAQETAVNLVKADQQLRSLQADAKDLEQHKI-KQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1566
Cdd:pfam05483 525 CKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1567 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVL----DRQLGHKKEELHLLQGSMVQAKAD 1642
Cdd:pfam05483 604 ENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1643 LQEALRLgETEVTEKCNH-IREVKSLLEELSFQKGELnvqISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNIL 1721
Cdd:pfam05483 684 ADEAVKL-QKEIDKRCQHkIAEMVALMEKHKHQYDKI---IEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLK 759
|
410 420
....*....|....*....|....*...
gi 2217375230 1722 DMLQLENHELQGLKLQHDQRVSELEKTQ 1749
Cdd:pfam05483 760 KQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1340-2037 |
6.24e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 6.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1340 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnves 1419
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK-------------- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1420 lmteleIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTESDAEEL 1499
Cdd:PRK03918 226 ------LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI----EELKKEIEELEEKVKELKELKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1500 ERRAQEtavnLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERn 1579
Cdd:PRK03918 296 IKLSEF----YEEYLDELREIEKRLSRLEEEINGIEERIKELEE----KEERLEELKKKLKELEKRLEELEERHELYEE- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1580 edhhlqvlkesevlLQAKRAELEKLKSQVTsqqqemavldrqlGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCN 1659
Cdd:PRK03918 367 --------------AKAKKEELERLKKRLT-------------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1660 HIREVKSLLEELSFQKGELNVQISErktqltlikqEIEKEEENLqvvlrqMSKHKTELKNILDMLQLENHELQGLKlqhd 1739
Cdd:PRK03918 420 EIKELKKAIEELKKAKGKCPVCGRE----------LTEEHRKEL------LEEYTAELKRIEKELKEIEEKERKLR---- 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1740 QRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKcdiwe 1819
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL----- 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1820 kklaqtkrvlaaaeenskmeQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAMQQQLQEKREAVNSLQEelanvqdh 1898
Cdd:PRK03918 555 --------------------KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELEPFYNEYLE-------- 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1899 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQvlQNEIEENKLKLVQQEMMFQRLQKERES 1978
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE 684
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 1979 EESKLETSKVTLKEQQHQLE--KELTDQKSKLDQVLSKVLAAEERVRTLQEEERwCESLEK 2037
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEerEKAKKELEKLEKALERVEELREKVKKYKALLK-ERALSK 744
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1649-2318 |
8.90e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 8.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1649 LGETEVTEKcnHIREVKSLLEELSFQKGELNvqiSERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLEN 1728
Cdd:TIGR02169 176 LEELEEVEE--NIERLDLIIDEKRQQLERLR---REREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1729 HELQGLKLQHDQRVSELEktqvavleeklelenlqqisqqqkgEIEwqkQLLERDKREIERMTA-ESRALQSCVECLSKE 1807
Cdd:TIGR02169 251 EELEKLTEEISELEKRLE-------------------------EIE---QLLEELNKKIKDLGEeEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1808 KEDLqekcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1887
Cdd:TIGR02169 303 IASL-------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1888 LQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEM 1967
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1968 MFQRLQKERESEESKLETskvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQL- 2046
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYD----LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLg 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2047 --SEREQQLVEKSG----------------ELLALQKEADSMRADFSLL------------------------------- 2077
Cdd:TIGR02169 532 svGERYATAIEVAAgnrlnnvvveddavakEAIELLKRRKAGRATFLPLnkmrderrdlsilsedgvigfavdlvefdpk 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2078 -----------------------------------------------------RNQFLTERKKAEKQVASLKEALKIQRS 2104
Cdd:TIGR02169 612 yepafkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2105 QLEKNLLTINEDSERDSSLLSKEQKqENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMAN-------- 2176
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASR-KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKElearieel 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2177 QKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPA---DLEAILERNENLEGELESLKENLpftmnegpfEEK 2253
Cdd:TIGR02169 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEArlrEIEQKLNRLTLEKEYLEKEIQEL---------QEQ 841
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 2254 LNFSQVHIMDEHWRGEALREKLRHREDRLKaqlrhcmSKQAEVlikgkRQTEGTLHSLRRQVDAL 2318
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELE-------ELEAAL-----RDLESRLGDLKKERDEL 894
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
725-1645 |
1.02e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 725 AELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQA---ELEKERQALKNALGKAQFSEEKEQEN-SELHAKLKHLQDD 800
Cdd:TIGR02168 196 NELERQLKSLERQAEKAERYKELKAELRELELALLVLrleELREELEELQEELKEAEEELEELTAElQELEEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 801 NNLLKQQLKDFQNHLNhvvdglvrpeEVAARVDELRRKLKlgtgemnihspsdVLGKSLADLQKQFSEILArskwERDEA 880
Cdd:TIGR02168 276 VSELEEEIEELQKELY----------ALANEISRLEQQKQ-------------ILRERLANLERQLEELEA----QLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 881 QVRERKLQEEMALQQEKLATGQEEFrqACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEAD 960
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEEL--ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 961 EEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKklkkavatsdklatAELTIAKDQLKSLHGTVmkinQERAEELQE 1040
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL--------------EELEEELEELQEELERL----EEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1041 AERFSRKAAQAAR-DLTRAEAEIELLQNLLRQKGEQFR------LEMEKTGVGTGANSQVLEIEklnetmERQRTEI--- 1110
Cdd:TIGR02168 469 ELEEAEQALDAAErELAQLQARLDSLERLQENLEGFSEgvkallKNQSGLSGILGVLSELISVD------EGYEAAIeaa 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1111 --ARLQNVLDltgsdnkGGFENVLEEIAELRRevsyqndyissmadpfKRRGYWYFMPPPPSSKVSSHSSQA-TKDSGVG 1187
Cdd:TIGR02168 543 lgGRLQAVVV-------ENLNAAKKAIAFLKQ----------------NELGRVTFLPLDSIKGTEIQGNDReILKNIEG 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1188 LKYSASTPVrkprpgqqdgKEGSQPPPASGYWvyspirsgLHKLFPSRDADSGGDSQEESelddqeeppfvpPPGYMMYT 1267
Cdd:TIGR02168 600 FLGVAKDLV----------KFDPKLRKALSYL--------LGGVLVVDDLDNALELAKKL------------RPGYRIVT 649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1268 vlPDGSPVpqgmalyapppplpnnsrplTPGTVVYGpppagapmvyGPPPPNFSIpfipmgvlhcnvpehHNLENEVSRL 1347
Cdd:TIGR02168 650 --LDGDLV--------------------RPGGVITG----------GSAKTNSSI---------------LERRREIEEL 682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1348 edimqhlkskkreerwmraskrqsEKEMEELHHNIDDLLQEKKSLECEVEELhrTVQKRQQQKDFIDGNVESLMTELEIE 1427
Cdd:TIGR02168 683 ------------------------EEKIEELEEKIAELEKALAELRKELEEL--EEELEQLRKELEELSRQISALRKDLA 736
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1428 KSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETA 1507
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1508 VNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVaakdsdfqclskkkEKLTEELQKLQKDIEMAERNEDHHLQVL 1587
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI--------------ESLAAEIEELEELIEELESELEALLNER 882
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375230 1588 KESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQE 1645
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1443-1654 |
1.37e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1443 IEKTLLKRRSELREADRLLAE--AESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSL 1520
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1521 QADA--KDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEdhhLQVLKESEVLLQAKR 1598
Cdd:COG3206 260 LQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE---LEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 1599 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKadLQEALRLGETEV 1654
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR--LAEALTVGNVRV 390
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
662-985 |
1.48e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.81 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 662 RDEKETLLQRLTEVEQE----RDQLEIVAMDAENMRKELAEL---ESALQEQHE--------VNASLQQT------QGDL 720
Cdd:PRK04863 278 ANERRVHLEEALELRRElytsRRQLAAEQYRLVEMARELAELneaESDLEQDYQaasdhlnlVQTALRQQekieryQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 721 SAYEAELEARLNLRdAEANQLKEELEKVTRLTQLEQSALQAELEKERQAL-------------KNALGKAQ-------FS 780
Cdd:PRK04863 358 EELEERLEEQNEVV-EEADEQQEENEARAEAAEEEVDELKSQLADYQQALdvqqtraiqyqqaVQALERAKqlcglpdLT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 781 EEKEQE-NSELHAKLKHLQDDNNLLKQQLKDFQNHLNH----------VVDGLVRPEE----------------VAARVD 833
Cdd:PRK04863 437 ADNAEDwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQfeqayqlvrkIAGEVSRSEAwdvarellrrlreqrhLAEQLQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 834 ELRRKLKLGTGEMNIHspsdvlgkslADLQKQFSEILARSKWERDEAQVRERkLQEEmalQQEKLATGQEEFRQACERAL 913
Cdd:PRK04863 517 QLRMRLSELEQRLRQQ----------QRAERLLAEFCKRLGKNLDDEDELEQ-LQEE---LEARLESLSESVSEARERRM 582
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 914 EARMNFDkrQHEARIQQMEN---EIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLREL-EKKKKLEDAKSQ 985
Cdd:PRK04863 583 ALRQQLE--QLQARIQRLAArapAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELtVERDELAARKQA 656
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1340-1940 |
1.78e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1340 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1419
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1420 LmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELScTKEKTKNAVEK-----------FTDAKRS 1488
Cdd:TIGR02169 446 K--ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEErvrggraveevLKASIQG 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1489 LLQTESDAEELERRAQ----------------ETAVNLVKADQQLRSLQAD-AKDLEQHKIKQEEILKEINKIVAAKDS- 1550
Cdd:TIGR02169 523 VHGTVAQLGSVGERYAtaievaagnrlnnvvvEDDAVAKEAIELLKRRKAGrATFLPLNKMRDERRDLSILSEDGVIGFa 602
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1551 -DFQCLSKKKEKLTEELQK---LQKDIEMAERNEDHHLQVLKESEVL----------LQAKRAEL--EKLKSQVTSQQQE 1614
Cdd:TIGR02169 603 vDLVEFDPKYEPAFKYVFGdtlVVEDIEAARRLMGKYRMVTLEGELFeksgamtggsRAPRGGILfsRSEPAELQRLRER 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1615 MAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRlgetEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQ 1694
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASR----KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1695 EIEKEEENLQVVLRQMSKHKTELKNILDMLQLE-----NHELQGLKLQH---DQRVSELEKTQVAVLEEKLELENLQQIS 1766
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiQAELSKLEEEVsriEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1767 QQQKGEIEWQK----QLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSN 1842
Cdd:TIGR02169 839 QEQRIDLKEQIksieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1843 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQ--QQLQEKREAVnslQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQ 1920
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELslEDVQAELQRV---EEEIRALEPVNMLAIQEYEEVLKRLDELKEKR 995
|
650 660
....*....|....*....|
gi 2217375230 1921 TRLQKDISEWANRFEDCQKE 1940
Cdd:TIGR02169 996 AKLEEERKAILERIEEYEKK 1015
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1738-2239 |
1.91e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1738 HDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLqekcdi 1817
Cdd:PRK02224 246 HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL------ 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1818 wEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQD 1897
Cdd:PRK02224 320 -EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1898 HLNLAKQDLLHTTKHQDVLLSEQTRLQKDIsewanrfedcqKEEETKqqqLQVLQNEIEENklklvqqemmfQRLQKE-- 1975
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELRERE-----------AELEAT---LRTARERVEEA-----------EALLEAgk 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1976 -----RESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaeERVRTLQEEERWCESLEKTLSQTKRQLSERE 2050
Cdd:PRK02224 454 cpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL----ERAEDLVEAEDRIERLEERREDLEELIAERR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2051 QQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEK---QVASL---KEALKIQRSQLEK---NLLTINEDSERDS 2121
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEareEVAELnskLAELKERIESLERirtLLAAIADAEDEIE 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2122 SLLSK-EQKQENSCIQKEMatielvAQDNHERARRLMKELNQMQYEYTELKKQMAnqkdlERRQMEISDAMRTLKSEvKD 2200
Cdd:PRK02224 610 RLREKrEALAELNDERRER------LAEKRERKRELEAEFDEARIEEAREDKERA-----EEYLEQVEEKLDELREE-RD 677
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 2217375230 2201 E-------IRTSLKNLNQFLPELPAdLEAILERNENLEGELESLKE 2239
Cdd:PRK02224 678 DlqaeigaVENELEELEELRERREA-LENRVEALEALYDEAEELES 722
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1372-1897 |
2.00e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1372 EKEMEELHHNIDDLLQEKKSLECEVEELH----RTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTL 1447
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEeqreQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1448 LKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLlqtESDAEELERRAQETAVNLVKADQQLRSLQADAKDL 1527
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1528 EQHKIKQEEILKEINKIVAAKDSDfqcLSKKKEKLTEelqkLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ 1607
Cdd:PRK02224 355 EERAEELREEAAELESELEEAREA---VEDRREEIEE----LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1608 VTSQQQEMAVLDRQLgHKKEELhLLQGSMVQAKADLQEALRLGETEvtEKCNHIREVKSLLEELSFQKGELNVQIsERKT 1687
Cdd:PRK02224 428 EAELEATLRTARERV-EEAEAL-LEAGKCPECGQPVEGSPHVETIE--EDRERVEELEAELEDLEEEVEEVEERL-ERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1688 QLTLIKQEIEKEEENLQVVLRQMSKHKTELKNilDMLQLEnhELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQ 1767
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEE--KRERAE--ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1768 QQKGEIEWQKQLLERdkreIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLA---QTKRVLAAAEENSKME--QSN 1842
Cdd:PRK02224 579 SKLAELKERIESLER----IRTLLAAIADAEDEIERLREKREALAELNDERRERLAekrERKRELEAEFDEARIEeaRED 654
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 1843 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQ------QQLQEKREAVNSLQEELANVQD 1897
Cdd:PRK02224 655 KERAEEYLEQVEEKLDELREERDDLQAEIGAVEneleelEELRERREALENRVEALEALYD 715
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1462-1651 |
2.16e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1462 AEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKE- 1540
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1541 -------------INKIVAAKD-SDF-------QCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRA 1599
Cdd:COG3883 92 aralyrsggsvsyLDVLLGSESfSDFldrlsalSKIADADADLLEELKADKAELEAKKAE-------LEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 1600 ELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGE 1651
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
459-721 |
2.59e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 459 EDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLykqlsgrlQLVNKLRQEALDLELQM 538
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLL--------QQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 539 EKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaQKSGKEQQLDimnKQYQQLESRLDEILSRIAKETEEIKDLEEQL 618
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPEL------------LQSPVIQQLR---AQLAELEAELAELSARYTPNHPDVIALRAQI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 619 tegqiaanEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAE 698
Cdd:COG3206 301 --------AALRAQLQ---QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
250 260
....*....|....*....|...
gi 2217375230 699 LesaLQEQHEVNASLQQTQGDLS 721
Cdd:COG3206 370 L---LQRLEEARLAEALTVGNVR 389
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-978 |
2.78e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 2.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 259 DRQEAFERFSLEEVERLERDLEKKmIETEELKSKqtrfLEEIKNQDKLNKSLKEEAMLqkqscEELKSDLNTKNElplsw 338
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKA-ERYQALLKE----KREYEGYELLKEKEALERQK-----EAIERQLASLEE----- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 339 flagpfllilysslKLKQKTIELTRACQKQYELEQELAfyKIDAKFEPLNyyPSEYAEIdKAPDESPYIGKSRYKRNMFA 418
Cdd:TIGR02169 252 --------------ELEKLTEEISELEKRLEEIEQLLE--ELNKKIKDLG--EEEQLRV-KEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 419 TESYIIDSAQAVQIKKMEPDEQLRNdhmnlrgHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQL-E 497
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETrD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 498 EAIQLKKISEAGKDLLY---KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSkdpKHSHMKA 574
Cdd:TIGR02169 386 ELKDYREKLEKLKREINelkRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW---KLEQLAA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 575 QKSGKEQQLDIMNKQYQQLESRLDEILSRIAkETEEIKDLEEQLTEGQIAANEALKKDLEGVIsGLQEYLGTIKGQ---- 650
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLKASIQGVH-GTVAQLGSVGERyata 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 651 -------------------ATQAQNECRKLRDEKETLLQrLTEVEQERDQLEIVAMDA---------------------- 689
Cdd:TIGR02169 541 ievaagnrlnnvvveddavAKEAIELLKRRKAGRATFLP-LNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyv 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 690 ----------ENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLrdAEANQLKEELEKVTRltqlEQSAL 759
Cdd:TIGR02169 620 fgdtlvvediEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEP--AELQRLRERLEGLKR----ELSSL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 760 QAELEKERQALKnalgkaqfseEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdglvrpEEVAARVDELRRKL 839
Cdd:TIGR02169 694 QSELRRIENRLD----------ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL----------EELEEDLSSLEQEI 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 840 KLGTGEMnihspsDVLGKSLADLQKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATgQEEFRQACERALEARmN 918
Cdd:TIGR02169 754 ENVKSEL------KELEARIEELEEDLHKLeEALNDLEARLSHSRIPEIQAELSKLEEEVSR-IEARLREIEQKLNRL-T 825
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 919 FDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKK 978
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1844-2203 |
2.87e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.03 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1844 EKLELNVRKLQQELDQLN-RDKLSLHND-ISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTK---HQDVL-- 1916
Cdd:COG3096 279 ERRELSERALELRRELFGaRRQLAEEQYrLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKierYQEDLee 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1917 LSEQTRLQKDISEWAN--------RFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE-SEESKLETSK 1987
Cdd:COG3096 359 LTERLEEQEEVVEEAAeqlaeaeaRLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARAlCGLPDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1988 V-----TLKEQQHQLEKELTDQKSKLD-------------QVLSKVLAAEER------VRTLQEEERWCESLEKTLSQTK 2043
Cdd:COG3096 439 AedylaAFRAKEQQATEEVLELEQKLSvadaarrqfekayELVCKIAGEVERsqawqtARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2044 RQLSEREQqlveksgeLLALQKEADSMRADFSLLRNQFLTerkkAEKQVASLKEALKIQRSQLEKNLltiNEDSERDSSl 2123
Cdd:COG3096 519 AQLAELEQ--------RLRQQQNAERLLEEFCQRIGQQLD----AAEELEELLAELEAQLEELEEQA---AEAVEQRSE- 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2124 LSKEQKQENSCIqKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIR 2203
Cdd:COG3096 583 LRQQLEQLRARI-KELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIE 661
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1535-2044 |
3.06e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 3.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1535 EEILKEINKIvaakDSDFQCLSKKKEKLTEELQKLQK---DIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQ 1611
Cdd:PRK03918 203 EEVLREINEI----SSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1612 QQEMAVLdRQLGHKKEELHLLQGSMVQAKADLQEaLRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTl 1691
Cdd:PRK03918 279 EEKVKEL-KELKEKAEEYIKLSEFYEEYLDELRE-IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1692 IKQEIEKEEENLQVVLRQMSKHKT--------ELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQ 1763
Cdd:PRK03918 356 ELEERHELYEEAKAKKEELERLKKrltgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1764 QISQQQKGEI--EWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLqEKCDIWEKKLAQTKRVLAAAEE-NSKMEQ 1840
Cdd:PRK03918 436 GKCPVCGRELteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLKELAEQLKElEEKLKK 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1841 SNLEKLELN---VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREavnsLQEELANVQDHL-NLAKQDLLHTTKHQDVL 1916
Cdd:PRK03918 515 YNLEELEKKaeeYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE----LEKKLDELEEELaELLKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1917 LSEQTRLQKDISEWaNRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKE--------RESEESKLETSKV 1988
Cdd:PRK03918 591 EERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEleelekkySEEEYEELREEYL 669
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 1989 TLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKR 2044
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1355-2068 |
3.12e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.92 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1355 KSKKREERWMRasKRQSEKEMEELHHNIDDLLQE---KKSLECEVEELHRTVQKRQQQkdfidgnVESLMTELEIEKSLK 1431
Cdd:pfam12128 218 LNRQQVEHWIR--DIQAIAGIMKIRPEFTKLQQEfntLESAELRLSHLHFGYKSDETL-------IASRQEERQETSAEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1432 HHEDIVDEIECIEKTLlKRRSELREADRLLAEAESELSCTKEKT----KNAVEKFTDAKRSLLQTESDAEELERR--AQE 1505
Cdd:pfam12128 289 NQLLRTLDDQWKEKRD-ELNGELSAADAAVAKDRSELEALEDQHgaflDADIETAAADQEQLPSWQSELENLEERlkALT 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1506 TAVNLVKADQQLRSLQAD---AKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSkkkeklteelQKLQKDIEMAERNedh 1582
Cdd:pfam12128 368 GKHQDVTAKYNRRRSKIKeqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALE----------SELREQLEAGKLE--- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1583 hlqvLKESEVLLQAKRAELEKLKSQVTSQQQEMAvldrQLGHKKEELHLLQGSMVQAKA---DLQEALRLGETEVTEKCN 1659
Cdd:pfam12128 435 ----FNEEEYRLKSRLGELKLRLNQATATPELLL----QLENFDERIERAREEQEAANAeveRLQSELRQARKRRDQASE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1660 HIREVKSLLEELSFQKGELNVQISERK-TQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENH-ELQGLKLq 1737
Cdd:pfam12128 507 ALRQASRRLEERQSALDELELQLFPQAgTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGElNLYGVKL- 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1738 HDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQScvecLSKEKEDLQEKCDI 1817
Cdd:pfam12128 586 DLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTA----LKNARLDLRRLFDE 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1818 WEKKLAQTKRVLAAAEENSKMEQSNLEK-LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREA-VNSLQEELANV 1895
Cdd:pfam12128 662 KQSEKDKKNKALAERKDSANERLNSLEAqLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAqLALLKAAIAAR 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1896 QD----HLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEE-----------ETKQQQLQVLQNEIEENKL 1960
Cdd:pfam12128 742 RSgakaELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRqevlryfdwyqETWLQRRPRLATQLSNIER 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1961 KLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLdqvlskvlaaeERVRTLQEEERwCESLEKTLS 2040
Cdd:pfam12128 822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM-----------SKLATLKEDAN-SEQAQGSIG 889
|
730 740
....*....|....*....|....*...
gi 2217375230 2041 QTKRQLserEQQLVEKSGELLALQKEAD 2068
Cdd:pfam12128 890 ERLAQL---EDLKLKRDYLSESVKKYVE 914
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1631-2008 |
3.49e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 52.20 E-value: 3.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1631 LLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLtlikqeiekeEENLQVVLRQM 1710
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEEL----------RQSREKHEELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1711 SKHKtELKNILDMLQLENHELQGLKLQHDQRVSELEktqvavleekleleNLQQISQQQKGEIEWQkqlLERDKREIERM 1790
Cdd:pfam07888 101 EKYK-ELSASSEELSEEKDALLAQRAAHEARIRELE--------------EDIKTLTQRVLERETE---LERMKERAKKA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1791 TAESRALQScveclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL---SL 1867
Cdd:pfam07888 163 GAQRKEEEA-------ERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAeneAL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1868 HNDISAMQQQLQEKREAVNSLQEELANVqdhlnLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ--KEEETKQ 1945
Cdd:pfam07888 236 LEELRSLQERLNASERKVEGLGEELSSM-----AAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARwaQERETLQ 310
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375230 1946 QQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKL 2008
Cdd:pfam07888 311 QSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASL 373
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
456-819 |
3.93e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 456 TQLEDKEKKISAAQTRLSELHDEIEKAEQQIL-----RATEEFKQLEEAI--QLKKISEAGKDLLY--KQLSGRLQLVNK 526
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqKEQDWNKELKSELknQEKKLEEIQNQISQnnKIISQLNEQISQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 527 LRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSL-----------DSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLES 595
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYkqeiknlesqiNDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 596 RLDEILSRIAKETEEIKDLEEqltegQIAANEALKKDLEGVISGLQEYLGTIKGqatqaqnECRKLRDEKETLLQRLTEV 675
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTN-----QDSVKELIIKNLDNTRESLETQLKVLSR-------SINKIKQNLEQKQKELKSK 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 676 EQERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYEAE------------LEARLNLRDAEANQLK 742
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLtKKISSLKEKIEKLESEKKEKESKISDLEDElnkddfelkkenLEKEIDEKNKEIEELK 574
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217375230 743 EELEKVTRlTQLEQSALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVV 819
Cdd:TIGR04523 575 QTQKSLKK-KQEEKQELIDQKEKEKKDLIKEI------EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
580-1115 |
4.76e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 4.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 580 EQQLDIMNKQYQQLEsRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECR 659
Cdd:COG4913 241 HEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 660 KLRDEKETL--------LQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNAS--------LQQTQGDLSAY 723
Cdd:COG4913 320 ALREELDELeaqirgngGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEefaalraeAAALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 724 EAELEARLNLRDAEANQLKEELEKVTR-LTQLEQ--SALQAELEKERQALKNALGKAQfseekeqenSELH--AKLKHLQ 798
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAeIASLERrkSNIPARLLALRDALAEALGLDE---------AELPfvGELIEVR 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 799 DDNnllkqqlKDFQNHLNHVVDG-----LVRPE---EVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADlqkqfsEIL 870
Cdd:COG4913 471 PEE-------ERWRGAIERVLGGfaltlLVPPEhyaAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD------SLA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 871 ARSKWERDEAQVR-ERKLQEEMALQQeklATGQEEFRQAcERAL--EARMNFDKRQHEARIQQMENEIHYL-QENLKSME 946
Cdd:COG4913 538 GKLDFKPHPFRAWlEAELGRRFDYVC---VDSPEELRRH-PRAItrAGQVKGNGTRHEKDDRRRIRSRYVLgFDNRAKLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 947 EIQGltdlQLQEADEEKERILAQLRELEKKKK-LEDAKSQEQVFGLDKELKKLKKAVATsdklATAELTIAKDQLKSLHG 1025
Cdd:COG4913 614 ALEA----ELAELEEELAEAEERLEALEAELDaLQERREALQRLAEYSWDEIDVASAER----EIAELEAELERLDASSD 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1026 TVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQK-------------------GEQFRLEMEKTGVG 1086
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELqdrleaaedlarlelrallEERFAAALGDAVER 765
|
570 580
....*....|....*....|....*....
gi 2217375230 1087 TGANSQVLEIEKLNETMERQRTEIARLQN 1115
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMR 794
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
454-620 |
4.77e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 454 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiQLKKISEAGKDLLYK------------------ 515
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA--ELEAQKEELAELLRAlyrlgrqpplalllsped 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 516 --QLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSL-DSKDPKHSHMKAQKSGKEQQLDIMNKQYQQ 592
Cdd:COG4942 131 flDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALlAELEEERAALEALKAERQKLLARLEKELAE 210
|
170 180
....*....|....*....|....*...
gi 2217375230 593 LESRLDEILSRIAKETEEIKDLEEQLTE 620
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1544-2240 |
5.38e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 5.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1544 IVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLG 1623
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1624 HKKEELHLLQGSMVQAK---ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEE 1700
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1701 ENLQVVLRQMSKHKTELKNILDMLQLENH---ELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQK 1777
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1778 QLLERDKREIERMTAESRALQSCVECLSKEKEDL-QEKCDIWEKKLaqtKRVLAAAEENSKMEQSNLEKLELNVRKLQQE 1856
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnNQKEQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1857 LDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEElanvqdhlnlaKQDLLHTTKHqdvLLSEQTRLQKDISEWANRFED 1936
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE-----------NQSYKQEIKN---LESQINDLESKIQNQEKLNQQ 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1937 CQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEE---SKLETSKVTLKEQQHQLEKELTDQKSKLDQVLS 2013
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2014 KVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQL----VEKSGELLALQKEADSMraDFSLLRNQFLTERKKAE 2089
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLesekKEKESKISDLEDELNKD--DFELKKENLEKEIDEKN 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2090 KQVASLKEALK-IQRSQLEKNLLTINEDSERD---SSLLSKEQKQEN-----SCIQKEMATIELVAQDNHERARRLMKEL 2160
Cdd:TIGR04523 568 KEIEELKQTQKsLKKKQEEKQELIDQKEKEKKdliKEIEEKEKKISSlekelEKAKKENEKLSSIIKNIKSKKNKLKQEV 647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2161 NQMQYEYTELKKQMAN----QKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFlpelpADLEAILERNENLEGELES 2236
Cdd:TIGR04523 648 KQIKETIKEIRNKWPEiikkIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRI-----KDLPKLEEKYKEIEKELKK 722
|
....
gi 2217375230 2237 LKEN 2240
Cdd:TIGR04523 723 LDEF 726
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
452-978 |
5.63e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 5.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 452 TPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqLKKISEAgkdllYKQLSGrlqLVNKLRQEA 531
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE---LKEKAEE-----YIKLSE---FYEEYLDEL 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 532 LDLELQMEKQKQEIAGKQKEIKDLqiaidsldskdpkhshmkaqkSGKEQQLDIMNKQYQQLESRLdEILSRIAKETEEI 611
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKEL---------------------EEKEERLEELKKKLKELEKRL-EELEERHELYEEA 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 612 KDLEEQLtegqiaanEALKKDLEGvisglqEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAEN 691
Cdd:PRK03918 368 KAKKEEL--------ERLKKRLTG------LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 692 MRKELAELESALQEQHEVN--ASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAElekerqA 769
Cdd:PRK03918 434 AKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK------E 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 770 LKNALGKaqFSEEKEQENSELHAKLKHLQDDnnlLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIH 849
Cdd:PRK03918 508 LEEKLKK--YNLEELEKKAEEYEKLKEKLIK---LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 850 SPSDV--LGKSLADLQKQFSEI--LARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHE 925
Cdd:PRK03918 583 GFESVeeLEERLKELEPFYNEYleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE 662
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 926 A---RIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKK 978
Cdd:PRK03918 663 ElreEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
454-730 |
6.46e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 6.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 454 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnKLRQEALD 533
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEID------------------------KLQAEIAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 534 LELQMEKQKQEIAgkqKEIKDLQIAIDS-------LDSKDPKhshmkaqksgkeqqlDIMNKQyqqleSRLDEILSRIAK 606
Cdd:COG3883 77 AEAEIEERREELG---ERARALYRSGGSvsyldvlLGSESFS---------------DFLDRL-----SALSKIADADAD 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 607 ETEEIKDLEEQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVA 686
Cdd:COG3883 134 LLEELKADKAELEA-KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2217375230 687 MDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR 730
Cdd:COG3883 213 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAG 256
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1764-2071 |
6.81e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 6.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1764 QISQQQKGEIEWQKQLlERDKREIERMTAESRALQSCVEclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNL 1843
Cdd:pfam17380 276 HIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVE----RRRKLEEAEKARQAEMDRQAAIYAEQERMAMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1844 EKLELNVRKlqQELDQLNRDKLSLH----NDISAMQQQLQEKREAVNSLQEELANV-------QDHLNLAKQDLLHTTKH 1912
Cdd:pfam17380 351 ERIRQEERK--RELERIRQEEIAMEisrmRELERLQMERQQKNERVRQELEAARKVkileeerQRKIQQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1913 QDVLLSEQTRLQKDisEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEmmfqrlQKERESEESKLETSKVTLKE 1992
Cdd:pfam17380 429 QEEARQREVRRLEE--ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELE------KEKRDRKRAEEQRRKILEKE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1993 QQHQLEKELTDQKSKldQVLSKVLaaEERVRTLQEEERWCESLEKTLSQT----KRQLSEREQQLVEKSGELLALQKEAD 2068
Cdd:pfam17380 501 LEERKQAMIEEERKR--KLLEKEM--EERQKAIYEEERRREAEEERRKQQemeeRRRIQEQMRKATEERSRLEAMERERE 576
|
...
gi 2217375230 2069 SMR 2071
Cdd:pfam17380 577 MMR 579
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1339-2129 |
8.12e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 8.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1339 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVE 1418
Cdd:pfam02463 301 ELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1419 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1498
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1499 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1578
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1579 NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELhllqgsmvqakadlqeaLRLGETEVTEKC 1658
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL-----------------KSIAVLEIDPIL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1659 NHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeenlqVVLRQMSKHKTELKNILDMLQLENHELQGLKLQH 1738
Cdd:pfam02463 604 NLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA--------KAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1739 DQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIW 1818
Cdd:pfam02463 676 LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1819 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELdqlnrdklslhnDISAMQQQLQEKREAVNSLQEELANVQDH 1898
Cdd:pfam02463 756 RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE------------KLKAQEEELRALEEELKEEAELLEEEQLL 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1899 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANR-FEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE 1977
Cdd:pfam02463 824 IEQEEKIKEEELEELALELKEEQKLEKLAEEELERlEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELE 903
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1978 SEESKletskvtlKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKS 2057
Cdd:pfam02463 904 EESQK--------LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV 975
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 2058 GELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQK 2129
Cdd:pfam02463 976 NLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAE 1047
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
460-761 |
8.50e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 8.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 460 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdlLYKQLSGRLQL--VNKLRQEALDLELQ 537
Cdd:PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS-----------ALNRLLPRLNLlaDETLADRVEEIREQ 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 538 M---EKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKsgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEikDL 614
Cdd:PRK04863 903 LdeaEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDY----QQAQQTQRDAKQQAFALTEVVQRRAHFSYE--DA 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 615 EEQLTEGQiAANEALKKDLEgvisGLQEYLGTIKGQATQAQNECRK-------LRDEKETLLQRLTEVEQERDQLEIVAm 687
Cdd:PRK04863 977 AEMLAKNS-DLNEKLRQRLE----QAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQDLGVPA- 1050
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 688 dAENMRKELAELESALQEQhevnasLQQTQGDLSAyeaeLEARLNLRDAEANQLKEELEKVTR-LTQLEQSALQA 761
Cdd:PRK04863 1051 -DSGAEERARARRDELHAR------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERdYHEMREQVVNA 1114
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
530-793 |
8.52e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 51.21 E-value: 8.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 530 EALDLELQMEKQKQEIAGKQKEIKD-LQIAIDSLDskDPKHSHMKAQksgkeqqldimnkQYQQ----LESRLDEILSRI 604
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQAEIVEaLQSALNWLE--ERKGSLERAK-------------QYQQvidnFPKLSAELRQQL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 605 AKETEEIKDLEEQLTegqiaaNEALKKDLEGVISGLQEylgtIKGQATQAQNECRKLRDEKETLLQRLTEVeqerdqlei 684
Cdd:PRK10929 89 NNERDEPRSVPPNMS------TDALEQEILQVSSQLLE----KSRQAQQEQDRAREISDSLSQLPQQQTEA--------- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 685 vamdaenmRKELAELESALQEQHEVNASLQQTQgdlsayEAELEARLNLRDAEANQLkeELEKVTRLTQLEQSALQAELE 764
Cdd:PRK10929 150 --------RRQLNEIERRLQTLGTPNTPLAQAQ------LTALQAESAALKALVDEL--ELAQLSANNRQELARLRSELA 213
|
250 260 270
....*....|....*....|....*....|....*....
gi 2217375230 765 KER--------QALKNALgKAQFSEEKEQ--ENSELHAK 793
Cdd:PRK10929 214 KKRsqqldaylQALRNQL-NSQRQREAERalESTELLAE 251
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
494-1073 |
9.75e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 9.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 494 KQLEEAIQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHS- 570
Cdd:PRK03918 149 KVVRQILGLDDYENAYKNLgeVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEk 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 571 ------HMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaNEALKKDLEGVISgLQEYL 644
Cdd:PRK03918 229 evkeleELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-----LKELKEKAEEYIK-LSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 645 GTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELES---ALQEQHEVNASLQQTQGDLS 721
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEErheLYEEAKAKKEELERLKKRLT 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 722 AYEAE-LEARLNLRDAEANQLKEELEKVT-RLTQLEQSAlqAELEKERQALKNALGK-----AQFSEEKEQE-NSELHAK 793
Cdd:PRK03918 383 GLTPEkLEKELEELEKAKEEIEEEISKITaRIGELKKEI--KELKKAIEELKKAKGKcpvcgRELTEEHRKElLEEYTAE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 794 LKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAA--RVDELRRKLKLGTGEMNIHSPSDVlGKSLADLQKQFSEILA 871
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKlkELAEQLKELEEKLKKYNLEELEKK-AEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 872 RSKWERDEAQvRERKLQEEMALQQEKLATGQEEfRQACERALEARMNFDKRQHEARIQQME------NEIHYLQENLKSM 945
Cdd:PRK03918 540 EIKSLKKELE-KLEELKKKLAELEKKLDELEEE-LAELLKELEELGFESVEELEERLKELEpfyneyLELKDAEKELERE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 946 EEIQGLTDLQLQEADEEKERILAQLRELEKK-KKLEDAKSQEQVFGLDKELKKLKKAVATsdklATAELTIAKDQLKSLH 1024
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKElEELEKKYSEEEYEELREEYLELSRELAG----LRAELEELEKRREEIK 693
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 2217375230 1025 GTVMKINQERaEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKG 1073
Cdd:PRK03918 694 KTLEKLKEEL-EEREKAKKELEKLEKALERVEELREKVKKYKALLKERA 741
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1874-2081 |
1.03e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1874 MQQQLQEKREAVNS----LQEELANVQDHLNLAKQDLLH-TTKHQDVLLSEQTR-LQKDISEWANRFEDCQKEEETKQQQ 1947
Cdd:COG3206 162 LEQNLELRREEARKalefLEEQLPELRKELEEAEAALEEfRQKNGLVDLSEEAKlLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1948 LQVLQNEIEENKLKL--VQQEMMFQRLQKERESEESKLETSKVTLKEQqH----QLEKELTDQKSKLDQVLSKVLA-AEE 2020
Cdd:COG3206 242 LAALRAQLGSGPDALpeLLQSPVIQQLRAQLAELEAELAELSARYTPN-HpdviALRAQIAALRAQLQQEAQRILAsLEA 320
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 2021 RVRTLQEEErwcESLEKTLSQTKRQLsereQQLVEKSGELLALQKEADSMRADFSLLRNQF 2081
Cdd:COG3206 321 ELEALQARE---ASLQAQLAQLEARL----AELPELEAELRRLEREVEVARELYESLLQRL 374
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1842-2045 |
1.08e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1842 NLEKLELNVRKLQQELDQLNRdklslhndISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLhtTKHQDVLLSEQT 1921
Cdd:COG4913 236 DLERAHEALEDAREQIELLEP--------IRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1922 RLQKDISEWANRFEDCQKEEETKQQQ--------LQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQ 1993
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 1994 QHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERwceSLEKTLSQTKRQ 2045
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELR---ELEAEIASLERR 434
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
455-702 |
1.21e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 455 DTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnKLRQEALDL 534
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE------------------------ALQAEIDKL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 535 ELQMEKQKQEIAGKQKEIKD----LQIAIDS-------LDSKDPKH--SHMKAQKSGKEQQLDIMNkQYQQLESRLDEIL 601
Cdd:COG3883 71 QAEIAEAEAEIEERREELGEraraLYRSGGSvsyldvlLGSESFSDflDRLSALSKIADADADLLE-ELKADKAELEAKK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 602 SRIAKETEEIKDLEEQLtegqiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQ 681
Cdd:COG3883 150 AELEAKLAELEALKAEL--------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
250 260
....*....|....*....|.
gi 2217375230 682 LEIVAMDAENMRKELAELESA 702
Cdd:COG3883 222 AAAAAAAAAAAAAAAAAAAAA 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
439-803 |
1.36e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 439 EQLRNDHMNL----RGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEA---IQLKKISEAGKD 511
Cdd:pfam15921 482 EELTAKKMTLesseRTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVqteCEALKLQMAEKD 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 512 ----LLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAidsLDSKDPKHSHMKAQKSGKE-QQLDIM 586
Cdd:pfam15921 562 kvieILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKIL---KDKKDAKIRELEARVSDLElEKVKLV 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 587 NKQYQQLES------RLDEILSRIAKETEEIKDLEEQLtegqiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRK 660
Cdd:pfam15921 639 NAGSERLRAvkdikqERDQLLNEVKTSRNELNSLSEDY--------EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 661 LRDEketllqrLTEVEQERDQLEIVAMDAENM----RKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDA 736
Cdd:pfam15921 711 TRNT-------LKSMEGSDGHAMKVAMGMQKQitakRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVAT 783
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375230 737 EANQLKEELEKVtrltqleqSALQAELEKERQALKNALGKA--QFSEEKE----QENSELHAKLKHLQDDNNL 803
Cdd:pfam15921 784 EKNKMAGELEVL--------RSQERRLKEKVANMEVALDKAslQFAECQDiiqrQEQESVRLKLQHTLDVKEL 848
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1365-1578 |
1.44e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1365 RASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL-EIEKSLKHHEDIVDEieci 1443
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaELRAELEAQKEELAE---- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1444 ektLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT-ESDAEELERRAQETAVNLVKADQQLRSLQA 1522
Cdd:COG4942 109 ---LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 1523 DAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1578
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1340-1610 |
1.45e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1340 LENEVSRLEDIMQHLKSKKREERWMR-------ASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDF 1412
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRdeadevlEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1413 IDGNVESLMTELEIEKSlkHHEDIVDEIEciekTLLKRRSELREAdrlLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT 1492
Cdd:PRK02224 291 LEEERDDLLAEAGLDDA--DAEAVEARRE----ELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1493 ESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKD 1572
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 1573 IEMAER--------------NEDHHLQVLKESEVLLQAKRAELEKLKSQVTS 1610
Cdd:PRK02224 442 VEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1438-2235 |
1.71e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1438 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1517
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1518 RSLQADAKDLEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHhlqvlkesevlLQAK 1597
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDE-------EEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSK-----------LSKE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1598 RAELEKLKSQVTSQQQEMAvldrqlgHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGE 1677
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEE-------EKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAE 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1678 LNVQISERKTQLtlikqeiekeeenlqvvlrqmSKHKTELKNILDMLQLEnhelQGLKLQHDQRVSELEktqvavleekl 1757
Cdd:pfam01576 227 LQAQIAELRAQL---------------------AKKEEELQAALARLEEE----TAQKNNALKKIRELE----------- 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1758 elenlQQISQQQKGeiewqkqlLERDKREIERMTAESRALQSCVECLSKEKEDL-------QEKCDIWEKKLAQTKRVLa 1830
Cdd:pfam01576 271 -----AQISELQED--------LESERAARNKAEKQRRDLGEELEALKTELEDTldttaaqQELRSKREQEVTELKKAL- 336
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1831 aaEENSKMEQSNLEKLELN----VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEelanvqdhlnlAKQDL 1906
Cdd:pfam01576 337 --EEETRSHEAQLQEMRQKhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQ-----------AKQDS 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1907 LHTTKhqdvllseqtRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETS 1986
Cdd:pfam01576 404 EHKRK----------KLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1987 KVTLKEQqhqlekelTDQKSKLDqvlSKVLAAEERVRTLQ----EEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLA 2062
Cdd:pfam01576 474 QELLQEE--------TRQKLNLS---TRLRQLEDERNSLQeqleEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEA 542
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2063 LQKEADSMRADFSLLRNQFlterkkAEKQVASLKEALKIQRSQLEKNLLTINEDSERD-SSLLSKEQKQENSCIQKEMAt 2141
Cdd:pfam01576 543 LEEGKKRLQRELEALTQQL------EEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQlVSNLEKKQKKFDQMLAEEKA- 615
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2142 IELVAQDNHERARRLMKELNQMQYEYT-ELKKQMANQKDLERRQMEISDAMRTLKSEvKDEIRTSLKNLNQFLPELPADL 2220
Cdd:pfam01576 616 ISARYAEERDRAEAEAREKETRALSLArALEEALEAKEELERTNKQLRAEMEDLVSS-KDDVGKNVHELERSKRALEQQV 694
|
810
....*....|....*
gi 2217375230 2221 EAILERNENLEGELE 2235
Cdd:pfam01576 695 EEMKTQLEELEDELQ 709
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
534-1134 |
1.79e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 534 LELQMEKQKQEIAGKQKEIKDLQIAiDSLDSKDPKHSHMKAQKSGKEQQLDimNKQYQQLESRLDEILSRIAKETEEIKD 613
Cdd:PTZ00121 1029 IEELTEYGNNDDVLKEKDIIDEDID-GNHEGKAEAKAHVGQDEGLKPSYKD--FDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 614 LEEQLTEGQIAANEALKKDLEgvisgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEveqERDQLEIVAMDAENMR 693
Cdd:PTZ00121 1106 TETGKAEEARKAEEAKKKAED-----ARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE---DARKAEEARKAEDAKK 1177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 694 KELAELESALQEQHEVNASLQQTQGDlSAYEAELEARL-NLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKN 772
Cdd:PTZ00121 1178 AEAARKAEEVRKAEELRKAEDARKAE-AARKAEEERKAeEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 773 --ALGKAQFSEEKEQENSELHAKLKHLQDDNNLLK-QQLKDFQNhlNHVVDGLVRPEEVAARVDELRRKLKlgtgemNIH 849
Cdd:PTZ00121 1257 feEARMAHFARRQAAIKAEEARKADELKKAEEKKKaDEAKKAEE--KKKADEAKKKAEEAKKADEAKKKAE------EAK 1328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 850 SPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQ------EEMALQQEKLATGQEEFRQACE---RALEARMNFD 920
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaekkkEEAKKKADAAKKKAEEKKKADEakkKAEEDKKKAD 1408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 921 KRQHEARIQQMENEIHYLQENLKSMEEIQGLTDlQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKK 1000
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE-EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1001 A--VATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERfSRKAAQAARDLTRAEAEiELlqnllrQKGEQFRL 1078
Cdd:PTZ00121 1488 AkkKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE-AKKADEAKKAEEKKKAD-EL------KKAEELKK 1559
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 1079 EMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEE 1134
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
126-167 |
1.86e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.77 E-value: 1.86e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2217375230 126 KLEVLNLSYNLIGKIEKLDKLLKLRELNLSYN-KISKIEGIEN 167
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1804-2241 |
1.89e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1804 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1883
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1884 AVNSLQEELANVqdhlnlaKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIE--ENKLK 1961
Cdd:TIGR04523 118 QKNKLEVELNKL-------EKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLniQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1962 LVQQEMMFQRLQ----KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEE----RWCE 2033
Cdd:TIGR04523 191 KIKNKLLKLELLlsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQnkikKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2034 SLEKTLSQTKRQLSEREQQLVEKSGELLAL--QKEADSMRADFSLLRNQ------FLTERKKAEKQVASLKEA---LKIQ 2102
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQLKSEISDLnnQKEQDWNKELKSELKNQekkleeIQNQISQNNKIISQLNEQisqLKKE 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2103 RSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQK------EMATIELVAQDNHERARRLMKELNQMQYEYTELKKQman 2176
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE--- 427
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 2177 QKDLERRQMEISDAMRTLKSEvKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2241
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1491-1688 |
2.13e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1491 QTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQ 1570
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1571 KDIE-----MAERNEDHHLQVLKESEVLLQAKRAeLEKLKSQVTSQQQEMAVLDRQLghkkEELHLLQGSMVQAKADLQE 1645
Cdd:COG4942 104 EELAellraLYRLGRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADL----AELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2217375230 1646 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1688
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
501-752 |
3.02e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 501 QLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaqksg 578
Cdd:COG4942 18 QADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL---------------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 579 kEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEalkkDLEGVISGLQeYLGTIkgqATQAQNEC 658
Cdd:COG4942 82 -EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE----DFLDAVRRLQ-YLKYL---APARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 659 RKLRDEKETLLQRLTEVEQERDQLEIVamdAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEA 738
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEAL---LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
250
....*....|....
gi 2217375230 739 NQLKEELEKVTRLT 752
Cdd:COG4942 230 ARLEAEAAAAAERT 243
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
458-1024 |
3.31e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 3.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 458 LEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEfKQLEEAIQLKKISEAGKDLLYKQLSGRL-QLVNKLRQEALDLEL 536
Cdd:pfam12128 366 LTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLA-KIREARDRQLAVAEDDLQALESELREQLeAGKLEFNEEEYRLKS 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 537 QMEKQKQEIAGKQ---KEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 613
Cdd:pfam12128 445 RLGELKLRLNQATatpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDE 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 614 LEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDaENMR 693
Cdd:pfam12128 525 LELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASE-EELR 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 694 KELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNA 773
Cdd:pfam12128 604 ERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANER 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 774 LgkAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVD---GLVRPEEVAARVDELRRKLKLGTGEMNIHS 850
Cdd:pfam12128 684 L--NSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDaqlALLKAAIAARRSGAKAELKALETWYKRDLA 761
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 851 PSDVLGKSLADLQKQFSEILAR-SKWERDEAQVRE--RKLQEEMALQQEKLATGQEEFRQACER------ALEARMNFDK 921
Cdd:pfam12128 762 SLGVDPDVIAKLKREIRTLERKiERIAVRRQEVLRyfDWYQETWLQRRPRLATQLSNIERAISElqqqlaRLIADTKLRR 841
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 922 RQHEARIQQMENEIHYLQENLKSME-EIQGLTDLQL----QEADEEKERILAQLRELEKKKK--LEDAKSQEQVFGLDKE 994
Cdd:pfam12128 842 AKLEMERKASEKQQVRLSENLRGLRcEMSKLATLKEdansEQAQGSIGERLAQLEDLKLKRDylSESVKKYVEHFKNVIA 921
|
570 580 590
....*....|....*....|....*....|
gi 2217375230 995 LKKLKKAVATSDKLATAELTIAKDQLKSLH 1024
Cdd:pfam12128 922 DHSGSGLAETWESLREEDHYQNDKGIRLLD 951
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1443-2188 |
3.33e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1443 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQA 1522
Cdd:TIGR00618 188 KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1523 DAKDLEQHKIKQEEILKEINkivaakdsdfqcLSKKKEKLTEElqklQKDIEMAERNEDHHLQVLKESEVLLQAKRAELE 1602
Cdd:TIGR00618 268 RIEELRAQEAVLEETQERIN------------RARKAAPLAAH----IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRA 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1603 KLKSQVTSQQQEMAVLDRQLghkKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVksLLEELSFQKGELNVQI 1682
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLH---SQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1683 SERKTQLTLIKQEIEKEeenlQVVLRQMSKHKTELKNILDMLQLENHELQGLKlqhdQRVSELEKTQVAVLEEKLELENL 1762
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQ----GQLAHAKKQQELQQRYAELCAAAITCTAQCEK----LEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1763 QQISQQqkgeiewqkqllERDKREIERMTAESRALQSCVECLSkEKEDLQEKCDIWEKKlAQTKRVLAAAEENSKMEQSn 1842
Cdd:TIGR00618 479 EQIHLQ------------ETRKKAVVLARLLELQEEPCPLCGS-CIHPNPARQDIDNPG-PLTRRMQRGEQTYAQLETS- 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1843 leklelnVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTR 1922
Cdd:TIGR00618 544 -------EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHA 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1923 LQKDISEWANRFEDCQkEEETKQQQLQVLQNEIEENKLKLVQQEMMfQRLQKERESEESKLETSKVTLKEQQHQLEkELT 2002
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRL-HLQQCSQELALKLTALHALQLTLTQERVR-EHALSIRVLPKELLASRQLALQKMQSEKE-QLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2003 DQKSKLDQVLSKVLAAEERVRTLqeeERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL 2082
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHIEEY---DREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEV 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2083 TERKKAEKQVASLKEALKIQRSQLEknlltinEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDN---HERARRLMKE 2159
Cdd:TIGR00618 771 TAALQTGAELSHLAAEIQFFNRLRE-------EDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEeqfLSRLEEKSAT 843
|
730 740
....*....|....*....|....*....
gi 2217375230 2160 LNQMQYEYTELKKQMANQKDLERRQMEIS 2188
Cdd:TIGR00618 844 LGEITHQLLKYEECSKQLAQLTQEQAKII 872
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1883-2088 |
3.47e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1883 EAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKL 1962
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1963 VQQE-----------------------------------MMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 2007
Cdd:COG4942 100 EAQKeelaellralyrlgrqpplalllspedfldavrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2008 LDQvlskvlaaeervrtlQEEERwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKK 2087
Cdd:COG4942 180 LAE---------------LEEER--AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
.
gi 2217375230 2088 A 2088
Cdd:COG4942 243 T 243
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
148-179 |
3.49e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.00 E-value: 3.49e-05
10 20 30
....*....|....*....|....*....|..
gi 2217375230 148 KLRELNLSYNKISKIEGIENMCNLQKLNLAGN 179
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
490-1077 |
3.54e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 490 TEEFKQLEEAIQLKKISEAgkdlLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAgkqkEIKDLQIAIDSLDSKDPKH 569
Cdd:TIGR00618 225 EKELKHLREALQQTQQSHA----YLTQKREAQEEQLKKQQLLKQLRARIEELRAQEA----VLEETQERINRARKAAPLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 570 SHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEylgtIKG 649
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE----ISC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 650 QATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEA 729
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 730 RLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAK-------------LKH 796
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnpgpltrrMQR 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 797 LQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDElrRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWE 876
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ--SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDML 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 877 RDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQM---ENEIHYLQENLKSMEEIQGLTD 953
Cdd:TIGR00618 611 ACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsirVLPKELLASRQLALQKMQSEKE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 954 lQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLhgtvMKINQE 1033
Cdd:TIGR00618 691 -QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR----TEAHFN 765
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2217375230 1034 RAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFR 1077
Cdd:TIGR00618 766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1557-2143 |
4.04e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1557 KKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVtsqqQEMAVLDRQLGHKKEELHLLQGSM 1636
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1637 VQAKADLQEalrlgetevTEKcnHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeeNLQVVLRQMSKHKTE 1716
Cdd:PRK03918 255 RKLEEKIRE---------LEE--RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-----EYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1717 LKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMtaesra 1796
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE------ 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1797 lqscVECLSKEKEDLQEKcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL--SLHNDISAM 1874
Cdd:PRK03918 393 ----LEELEKAKEEIEEE----ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1875 QQQLQEKREAVNSLQEELANVQDHLNLAKQdLLHTTKHQDVLLSEQTRLQK----DISEWANRFEDCQKEEETKQQQLQV 1950
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1951 LQNEIEENKLklvqqemmfqrLQKERESEESKLETSKVTLKEQQHQLE-------KELTDQKSKLDQVLSKVLAAEERVR 2023
Cdd:PRK03918 544 LKKELEKLEE-----------LKKKLAELEKKLDELEEELAELLKELEelgfesvEELEERLKELEPFYNEYLELKDAEK 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2024 TLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADsmRADFSLLRNQFLTERKKAEKQVASLKEaLKIQR 2103
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE-LEKRR 689
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 2217375230 2104 SQLEKNLLTINEDSERdssllSKEQKQENSCIQKEMATIE 2143
Cdd:PRK03918 690 EEIKKTLEKLKEELEE-----REKAKKELEKLEKALERVE 724
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1438-1648 |
4.20e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1438 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1517
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1518 RSLQADAKDL--EQHKIKQEEILKEINKIVAAKDS--DFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVL 1593
Cdd:COG4942 100 EAQKEELAELlrALYRLGRQPPLALLLSPEDFLDAvrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 1594 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsmvQAKADLQEALR 1648
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIA 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
457-1146 |
4.53e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 457 QLEDKEKKISAAQTRLSELHDEIEKAE--QQILRATEEFKQLEEAIQlKKISEAGKDLLYKQLSGRLQLVNKLRQEALDL 534
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYELLKE-KEALERQKEAIERQLASLEEELEKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 535 ELQMEKQKQEIAGKQKEIKDL----QIAIDSldskdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEE 610
Cdd:TIGR02169 264 EKRLEEIEQLLEELNKKIKDLgeeeQLRVKE------KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 611 IKDLEEQLTEGQIaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaE 690
Cdd:TIGR02169 338 IEELEREIEEERK-----RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK------R 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 691 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELE-ARLNLRDAEAN--QLKEELEKVT---RLTQLEQSALQAELE 764
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEdKALEIKKQEWKleQLAADLSKYEqelYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 765 KERQALKNALGKAQFSEEKEQENSelhAKLKHLQDDNNLLKQQLKDF---------------QNHLNHVVdglVRPEEVA 829
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVRGGR---AVEEVLKASIQGVHGTVAQLgsvgeryataievaaGNRLNNVV---VEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 830 ARVDELRRKLKLGTGEM-------NIHSPSDVLGKS--------LADLQKQFS--------------------------- 867
Cdd:TIGR02169 561 KEAIELLKRRKAGRATFlplnkmrDERRDLSILSEDgvigfavdLVEFDPKYEpafkyvfgdtlvvedieaarrlmgkyr 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 868 ------EILARS------KWERDEAQVRERKLQEEMALQQEKLatgqEEFRQACERALEARMNFDKRQHEARIQqmenei 935
Cdd:TIGR02169 641 mvtlegELFEKSgamtggSRAPRGGILFSRSEPAELQRLRERL----EGLKRELSSLQSELRRIENRLDELSQE------ 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 936 hyLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTI 1015
Cdd:TIGR02169 711 --LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1016 AKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQfRLEMEKtgvgtgansqvlE 1095
Cdd:TIGR02169 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKSIEK------------E 855
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 1096 IEKLNETMERQRTEIARLQN-VLDLTG--SDNKGGFENVLEEIAELRREVSYQN 1146
Cdd:TIGR02169 856 IENLNGKKEELEEELEELEAaLRDLESrlGDLKKERDELEAQLRELERKIEELE 909
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
435-792 |
4.90e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 435 MEPDEQLRNDHMNLrghtpLDTQLEDKEKkISAAQTRLSELHDEIEKAEQQILRATEefkQLEEAIQLKKISEAGKDLLY 514
Cdd:COG3096 325 LEQDYQAASDHLNL-----VQTALRQQEK-IERYQEDLEELTERLEEQEEVVEEAAE---QLAEAEARLEAAEEEVDSLK 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 515 KQLSGRLQLVNKLRQEALdlELQMEKQKQEIAGKQKEIKDLqiaidSLDSKDPKHSHMKAQKS-------GKEQQLDIMN 587
Cdd:COG3096 396 SQLADYQQALDVQQTRAI--QYQQAVQALEKARALCGLPDL-----TPENAEDYLAAFRAKEQqateevlELEQKLSVAD 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 588 KQYQQLESRLdEILSRIAKETEEikdleeqlTEGQIAANEALK-----KDLEGVISGLQEYLGTIKgQATQAQNECRKLR 662
Cdd:COG3096 469 AARRQFEKAY-ELVCKIAGEVER--------SQAWQTARELLRryrsqQALAQRLQQLRAQLAELE-QRLRQQQNAERLL 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 663 DEketLLQRLTEVEQERDQLEIVAMDAEnmrKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR----LNLRDAeA 738
Cdd:COG3096 539 EE---FCQRIGQQLDAAEELEELLAELE---AQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawLAAQDA-L 611
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 739 NQLKEEL-EKVTRLTQLeQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 792
Cdd:COG3096 612 ERLREQSgEALADSQEV-TAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1776-2030 |
6.55e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 6.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1776 QKQLLERDKREIErmTAESRALQSCVEclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE-------- 1847
Cdd:PRK11281 42 QAQLDALNKQKLL--EAEDKLVQQDLE----QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKddndeetr 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1848 -----LNVRKLQQELDQLNRDKLSLHND---------------------ISAMQQQLQEKREAVNSLQEElanvQDHLNL 1901
Cdd:PRK11281 116 etlstLSLRQLESRLAQTLDQLQNAQNDlaeynsqlvslqtqperaqaaLYANSQRLQQIRNLLKGGKVG----GKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1902 AKQDLLHTtkhQDVLLSEQTRLQKDISEWANRFEDC---QKEEETK-----QQQLQVLQNEIEENKLKLVQQEMMfqrlQ 1973
Cdd:PRK11281 192 SQRVLLQA---EQALLNAQNDLQRKSLEGNTQLQDLlqkQRDYLTAriqrlEHQLQLLQEAINSKRLTLSEKTVQ----E 264
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375230 1974 KERESEESKLETSKVTLKEQQ--HQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 2030
Cdd:PRK11281 265 AQSQDEAARIQANPLVAQELEinLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSER 323
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1340-1892 |
6.61e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 6.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1340 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1419
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1420 LMTELEIEKslKHHEDIvdeiecieKTLLKRRSELREADRLLAEAESELsctKEKTKNAVEKFTDAKRSLLQTESDAEEL 1499
Cdd:PRK01156 244 LSSLEDMKN--RYESEI--------KTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1500 ERRAQETAVNLVKAD---QQLRSLQADAKDLEQHKIKQEEILKEINKIvAAKDSDFQCLSKKKEKLTEELQKLQKDIEMA 1576
Cdd:PRK01156 311 KQILSNIDAEINKYHaiiKKLSVLQKDYNDYIKKKSRYDDLNNQILEL-EGYEMDYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1577 ERNEDHHLQVLKESEVLLQAKRAE----LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKAdlqeALRLGET 1652
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC----GTTLGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1653 EVTEKCNHIREVKSLLEE-LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDML-QLENHE 1730
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKInELKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1731 LQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQIS----QQQKGEIEWQKQLLERDKREIE---------------RMT 1791
Cdd:PRK01156 546 DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDietnRSRSNEIKKQLNDLESRLQEIEigfpddksyidksirEIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1792 AESRALQSCVECLSKEK---EDLQEKCDIWEKKLAQTKRVlaaaEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1868
Cdd:PRK01156 626 NEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIAEIDSI----IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701
|
570 580
....*....|....*....|....
gi 2217375230 1869 NDISAMQQQLQEKREAVNSLQEEL 1892
Cdd:PRK01156 702 STIEILRTRINELSDRINDINETL 725
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
591-778 |
7.87e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 591 QQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK----DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE 666
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 667 TLLQRLTEVEQERDQL----EIVAMDAE--NMRKELAELESALQEQHEvnaslqqtqgDLSAYEAELEARLNLRDAEANQ 740
Cdd:COG3206 244 ALRAQLGSGPDALPELlqspVIQQLRAQlaELEAELAELSARYTPNHP----------DVIALRAQIAALRAQLQQEAQR 313
|
170 180 190
....*....|....*....|....*....|....*...
gi 2217375230 741 LKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 778
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
591-748 |
8.16e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 8.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 591 QQLESRLDEILSRIAKETEEIKDLEEQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE-- 666
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAalEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEye 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 667 TLLQRLTEVEQERDQLEivamdaENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELE 746
Cdd:COG1579 93 ALQKEIESLKRRISDLE------DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
..
gi 2217375230 747 KV 748
Cdd:COG1579 167 EL 168
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
458-982 |
1.02e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 458 LEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE--EAIQLKKISEAGKDllYKQLSGRLQLVNKLRQEALDLE 535
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEksHSITLKEIERLSIE--YNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 536 LQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLE 615
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAII 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 616 EQLTEGQIAANEALKK-----DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQerdQLEIVAMDAE 690
Cdd:PRK01156 329 KKLSVLQKDYNDYIKKksrydDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISE---ILKIQEIDPD 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 691 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAE------ANQLKEE-LEKVTRLTQLEQSALQAEL 763
Cdd:PRK01156 406 AIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcGTTLGEEkSNHIINHYNEKKSRLEEKI 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 764 EK-ERQALKNALGKAQFSEEKEQENSElhaKLKHLQDDNNLLKQ---QLKDFQNHLNHVVDGLVRPEEVAAR-----VDE 834
Cdd:PRK01156 486 REiEIEVKDIDEKIVDLKKRKEYLESE---EINKSINEYNKIESaraDLEDIKIKINELKDKHDKYEEIKNRykslkLED 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 835 LRRKLKLGTGEM---------NIHSPSDVLGKSLADLQKQFSEILAR---------SKWERDEAQVR----ERKLQEEMA 892
Cdd:PRK01156 563 LDSKRTSWLNALavislidieTNRSRSNEIKKQLNDLESRLQEIEIGfpddksyidKSIREIENEANnlnnKYNEIQENK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 893 LQQEKLATGQEEFRQacERALEARMNFDKRQHEARIQQMENEIHY----LQENLKSMEEIQGLTDLQLQEADEEKERILA 968
Cdd:PRK01156 643 ILIEKLRGKIDNYKK--QIAEIDSIIPDLKEITSRINDIEDNLKKsrkaLDDAKANRARLESTIEILRTRINELSDRIND 720
|
570
....*....|....
gi 2217375230 969 QLRELEKKKKLEDA 982
Cdd:PRK01156 721 INETLESMKKIKKA 734
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
454-977 |
1.08e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 454 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVN----KLRQ 529
Cdd:TIGR04523 87 LNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNnkynDLKK 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 530 EALDLELQMEKQKQEIAGKQKEIKD-------LQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILS 602
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKiknkllkLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 603 RIAKETEEIKDLEEQLTE---------GQIAANEALKKDLEGVISGL------------QEYLGTIKGQATQAQNECRKL 661
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKikkqlsekqKELEQNNKKIKELEKQLNQLkseisdlnnqkeQDWNKELKSELKNQEKKLEEI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 662 RDEKETLLQRLTEVEQERDQLEIVAMDAEN----MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAE 737
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESenseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 738 ANQLKEELEKvtrltqLEQSALQAELEKERQALKNALGKAQFSEEKEQeNSELHAKLKHLQDDNNLLKQQLKDFQNHLNH 817
Cdd:TIGR04523 407 NQQKDEQIKK------LQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 818 VVDGLvrpeevaarvDELRRKLKLGTGEMnihspsdvlgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEK 897
Cdd:TIGR04523 480 IKQNL----------EQKQKELKSKEKEL----------KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESK 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 898 LATGQEEFrqaceraLEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKK 977
Cdd:TIGR04523 540 ISDLEDEL-------NKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1702-2241 |
1.10e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1702 NLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEeklelenlqqiSQQQKGEIEWQKQLLE 1781
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE-----------LEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1782 RDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKkLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLN 1861
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1862 RDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEE 1941
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1942 ETKQQQLQVLQNEIEENKLKL-----VQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDqkskldqvLSKVL 2016
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE--------LEKVL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2017 AAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEK-SGELLALQKEADSMRADFSLLrNQFLTERKKAEKQVASL 2095
Cdd:PRK03918 490 KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKlKEKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2096 KEALK-IQRSQLEKNLLTINEDSERDSSLLSKEQKQensciqkematIELVAQDnheraRRLMKELNQMQYEYTELKKQM 2174
Cdd:PRK03918 569 EEELAeLLKELEELGFESVEELEERLKELEPFYNEY-----------LELKDAE-----KELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217375230 2175 ANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2241
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1737-1957 |
1.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1737 QHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCD 1816
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1817 IWEKKLAQTKRVLAAAEENSKME----QSNLEKLELNVRKLQqeldQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEEL 1892
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLK----YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 1893 ANVQDHLNLAKQDLLHTTKHQDVLLseqTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1957
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1938-2115 |
1.59e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1938 QKEEETkQQQLQVLQNEIEENKLKLVQQEMMFQRLQKER-----ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVL 2012
Cdd:COG3206 168 LRREEA-RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2013 SKVLAAEERVRTLQEEERWcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQV 2092
Cdd:COG3206 247 AQLGSGPDALPELLQSPVI-QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEAL 325
|
170 180
....*....|....*....|...
gi 2217375230 2093 ASLKEALKIQRSQLEKNLLTINE 2115
Cdd:COG3206 326 QAREASLQAQLAQLEARLAELPE 348
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1545-1794 |
1.84e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1545 VAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGH 1624
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1625 KKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTlikqeiekeeeNLQ 1704
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA-----------ELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1705 VVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQvavleekleLENLQQISQQQKGEIEWQKQL--LER 1782
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL---------AELAAELAELQQEAEELEALIarLEA 234
|
250
....*....|..
gi 2217375230 1783 DKREIERMTAES 1794
Cdd:COG4942 235 EAAAAAERTPAA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
457-969 |
1.98e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 457 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ--LKKISEAG---KDLLYKQLSGRLQLVNKLRQEA 531
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDelEAQIRGNGgdrLEQLEREIERLERELEERERRR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 532 LDLELQMEKQKQEIAGKQKEIKDLQIAIdsldskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEI 611
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRAEA-------------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 612 KDLEEQ---LTEGQIAANEALKKDLEGVISGLQ---EYLgtikgqatQAQNECRKLRDEKETLL--QRLT---EVEQERD 680
Cdd:COG4913 429 ASLERRksnIPARLLALRDALAEALGLDEAELPfvgELI--------EVRPEEERWRGAIERVLggFALTllvPPEHYAA 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 681 QLEIVamDAENMRKEL------AELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLR-------DAEanQLKEELEK 747
Cdd:COG4913 501 ALRWV--NRLHLRGRLvyervrTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRfdyvcvdSPE--ELRRHPRA 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 748 VTRLTQLEQS-----------------------ALQAELEKERQALKNALGKAQfseekeQENSELHAKLKHLQDdnnlL 804
Cdd:COG4913 577 ITRAGQVKGNgtrhekddrrrirsryvlgfdnrAKLAALEAELAELEEELAEAE------ERLEALEAELDALQE----R 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 805 KQQLKDFQNHLNHVVDglvrPEEVAARVDELRRKLKlgtgemNIHSPSDVLgKSLADLQKQFSEILARSKWERDEAQVRE 884
Cdd:COG4913 647 REALQRLAEYSWDEID----VASAEREIAELEAELE------RLDASSDDL-AALEEQLEELEAELEELEEELDELKGEI 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 885 RKLQEEMALQQEKLATGQEEFRQACERA-LEARMNFDKRQHEARIQQMENEIhylQENLKsmEEIQGLTDlQLQEADEEK 963
Cdd:COG4913 716 GRLEKELEQAEEELDELQDRLEAAEDLArLELRALLEERFAAALGDAVEREL---RENLE--ERIDALRA-RLNRAEEEL 789
|
....*.
gi 2217375230 964 ERILAQ 969
Cdd:COG4913 790 ERAMRA 795
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1781-2011 |
2.02e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.96 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1781 ERDKReIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRV--LAAAEENSKMEQSNLEKLELNVRKLQQELD 1858
Cdd:pfam15905 91 EQDKR-LQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVneLLKAKFSEDGTQKKMSSLSMELMKLRNKLE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1859 QLNRDKLSLHNDisaMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ 1938
Cdd:pfam15905 170 AKMKEVMAKQEG---MEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIA 246
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 1939 KEEET---KQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKvtlKEQQHQLEKELTDQKSKLDQV 2011
Cdd:pfam15905 247 QLEELlkeKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREY---EEKEQTLNAELEELKEKLTLE 319
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
170-220 |
2.03e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 41.36 E-value: 2.03e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2217375230 170 NLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL--QDISKLKPLQDL 220
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspGAFSGLPSLRYL 54
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
570-1574 |
2.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 570 SHMKAQKSGKEQQLDIMNKQYQQLESRLDEI------LSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEy 643
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELerqlksLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 644 lgtikgQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAE----NMRKELAELESALQEQHEVNASLQQTQGD 719
Cdd:TIGR02168 247 ------ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 720 LSAYEAELEARLNLRDAEANQLKEELEKVTRLTQlEQSALQAELEKERQALKNALGKAQfsEEKEQENSELHAKLKHLQD 799
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESRLEELE--EQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 800 DNNLLkQQLKDFQNHLNHvvdglvRPEEVAARVDELRRKLklgtgemnihspsdvlgkSLADLQKQfSEILARSKWERDE 879
Cdd:TIGR02168 398 LNNEI-ERLEARLERLED------RRERLQQEIEELLKKL------------------EEAELKEL-QAELEELEEELEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 880 AQVRERKLQEEMALQQEKLATGQEEFRQAceRALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDL--QLQ 957
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAA--ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELI 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 958 EADEEKER-ILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKInqerAE 1036
Cdd:TIGR02168 530 SVDEGYEAaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV----AK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1037 ELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEK----------TGVGTGANSQVL----EIEKLNET 1102
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILerrrEIEELEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1103 MERQRTEIARLQNVLDltgsDNKGGFENVLEEIAELRREVSYQNDYISSMADPFKRRgywyfmpPPPSSKVSSHSSQATK 1182
Cdd:TIGR02168 686 IEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEELSRQISALRKDLARL-------EAEVEQLEERIAQLSK 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1183 DSGVGLKYSAStpvrkprpgqqdgkegsqpppasgywvyspIRSGLHKLFPSRDADSGGDSQEESELDDQEEppfvpppg 1262
Cdd:TIGR02168 755 ELTELEAEIEE------------------------------LEERLEEAEEELAEAEAEIEELEAQIEQLKE-------- 796
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1263 ymmytvlpdgspvpqgmalyapppPLPNNSRPLTpgtvvygpppagapmvygppppnfsipfipmgvlhcnvpehhNLEN 1342
Cdd:TIGR02168 797 ------------------------ELKALREALD------------------------------------------ELRA 810
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1343 EVSRLEDIMQHLKSKKREERWMRASKrqsEKEMEELHHNIDDLLQEKKSLECEVEELhrTVQKRQQQKDFIDGNVESLMT 1422
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAAT---ERRLEDLEEQIEELSEDIESLAAEIEEL--EELIEELESELEALLNERASL 885
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1423 ELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTEsdAEELERR 1502
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL----EGLEVRIDNLQERLSEEYSLT--LEEAEAL 959
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 1503 AQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQKDIE 1574
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE-------RYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
76-205 |
2.16e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 46.32 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 76 SHAGVRYITEALikkltkQDNLALiKSLNLSLSKDGGKKFKYI-ENLEKCVKLEVLNLSYNLIGK------IEKLDKLLK 148
Cdd:COG5238 277 GAEGAIALAKAL------QGNTTL-TSLDLSVNRIGDEGAIALaEGLQGNKTLHTLNLAYNGIGAqgaialAKALQENTT 349
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 149 LRELNLSYNKISK------IEGIENMCNLQKLNLAGNEI-EHIPVWLGKKLK--SLRVLNLKGNKI 205
Cdd:COG5238 350 LHSLDLSDNQIGDegaialAKYLEGNTTLRELNLGKNNIgKQGAEALIDALQtnRLHTLILDGNLI 415
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
534-743 |
2.24e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 534 LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpkhshmkaQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 613
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVDLSE--------EAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGS 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 614 LEEQLTE-GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNecrkLRDEKETLLQRL-TEVEQERDQLEIvamDAEN 691
Cdd:COG3206 252 GPDALPElLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIA----LRAQIAALRAQLqQEAQRILASLEA---ELEA 324
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 692 MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKE 743
Cdd:COG3206 325 LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1833-2209 |
2.24e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1833 EENSKMEQSNLEK-LEL--NVRKLQQELDQLNRDklslhndISAMQQQLQEKREAVNSLQEELANV--QDHLNLAKQDLl 1907
Cdd:PRK11281 55 EAEDKLVQQDLEQtLALldKIDRQKEETEQLKQQ-------LAQAPAKLRQAQAELEALKDDNDEEtrETLSTLSLRQL- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1908 htTKHQDVLLSEQTRLQKDISEwANrfedcqKEEETKQQQLQVLQNEIEENKlklvqqemmfQRLQKERESEESKLETSK 1987
Cdd:PRK11281 127 --ESRLAQTLDQLQNAQNDLAE-YN------SQLVSLQTQPERAQAALYANS----------QRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1988 VTLKEQQHQLEKELT--DQKSKLDQvlsKVLAAEErvrTLQEeerwceslektLSQTKRQLSEREQQLVEKsgELLALQk 2065
Cdd:PRK11281 188 ALRPSQRVLLQAEQAllNAQNDLQR---KSLEGNT---QLQD-----------LLQKQRDYLTARIQRLEH--QLQLLQ- 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2066 eadsmradfSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINED-SERdsslLSKEQKQENSCIQKEMATIEL 2144
Cdd:PRK11281 248 ---------EAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQlSQR----LLKATEKLNTLTQQNLRVKNW 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2145 VaqDNHERARRLMKE--------------LNQMQYEYTELK--KQMANQ-KDLERRQMEIS--------------DAMRT 2193
Cdd:PRK11281 315 L--DRLTQSERNIKEqisvlkgslllsriLYQQQQALPSADliEGLADRiADLRLEQFEINqqrdalfqpdayidKLEAG 392
|
410
....*....|....*.
gi 2217375230 2194 LKSEVKDEIRTSLKNL 2209
Cdd:PRK11281 393 HKSEVTDEVRDALLQL 408
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
686-912 |
2.28e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 686 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTR---LTQLEQSALQAE 762
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 763 LEKERQALKNALGKAQFSEEKEQENSELHAK--------LKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDE 834
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375230 835 LRRKLKlgtgemnihspsdVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERA 912
Cdd:COG4942 179 LLAELE-------------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1776-2199 |
2.40e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1776 QKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEK-KLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQ 1854
Cdd:pfam10174 174 KKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRnQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1855 QELDQLNrdklslHNDISAMQQQLQEKR--EAVNSLQEELANVQDHLnlaKQDLlhtTKHQDVLLSEQTRLQKdiseWAN 1932
Cdd:pfam10174 254 DEVQMLK------TNGLLHTEDREEEIKqmEVYKSHSKFMKNKIDQL---KQEL---SKKESELLALQTKLET----LTN 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1933 RFEDCQKEEE-------TKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESeeskletskvtLKEQQHQLEKELTDQK 2005
Cdd:pfam10174 318 QNSDCKQHIEvlkesltAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD-----------LTEEKSTLAGEIRDLK 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2006 SKLDQVLSKVLAAEERVRTLQEE-----------ERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSmradf 2074
Cdd:pfam10174 387 DMLDVKERKINVLQKKIENLQEQlrdkdkqlaglKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRER----- 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2075 slLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATielvaQDNHERAR 2154
Cdd:pfam10174 462 --EDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAV-----EQKKEECS 534
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2217375230 2155 RLMKELNQMQyeytelkkqmaNQKDLERRQMEISDAMRTLKSEVK 2199
Cdd:pfam10174 535 KLENQLKKAH-----------NAEEAVRTNPEINDRIRLLEQEVA 568
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1843-2001 |
2.45e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1843 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS--EQ 1920
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1921 TRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKE 2000
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
.
gi 2217375230 2001 L 2001
Cdd:COG1579 172 I 172
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
384-1118 |
2.76e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 384 FEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDsaqaVQIKKMEPDEQLRNDHMNLRGHT-PLDTQLEDKE 462
Cdd:pfam15921 48 FTQIPIFPKYEVELDSPRKIIAYPGKEHIERVLEEYSHQVKD----LQRRLNESNELHEKQKFYLRQSViDLQTKLQEMQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 463 KKISAA---QTRLSELHDEIEKAEQQILRATEEFKQLEEaiQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQME 539
Cdd:pfam15921 124 MERDAMadiRRRESQSQEDLRNQLQNTVHELEAAKCLKE--DMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASG 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 540 KQKQEIAGKQK-EIKDLQIAIDS-LDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQ-----LESRLDEILSRIAKETEEIK 612
Cdd:pfam15921 202 KKIYEHDSMSTmHFRSLGSAISKiLRELDTEISYLKGRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEIT 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 613 DLEEQLTEGQIAAN------EALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRD---------EKETLL--QRLTEV 675
Cdd:pfam15921 282 GLTEKASSARSQANsiqsqlEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRmyedkieelEKQLVLanSELTEA 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 676 EQERDQ-----------LEIVAMDAENMRKELA------------------ELESALQEQHEVNASLQQTQGDLSAYEAE 726
Cdd:pfam15921 362 RTERDQfsqesgnlddqLQKLLADLHKREKELSlekeqnkrlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSE 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 727 LEARLNLRDAEANQLKEELEKVTRLT-QLEQSA-LQAELEKERQALKNALGKAQFS--------EEKEQENSELHAKLKH 796
Cdd:pfam15921 442 CQGQMERQMAAIQGKNESLEKVSSLTaQLESTKeMLRKVVEELTAKKMTLESSERTvsdltaslQEKERAIEATNAEITK 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 797 LQDDNNLLKQQLKDFQNHLNHVvdglvrpEEVAARVDELRRKLklgtgemnihSPSDVLGKSLADLQKQFSEILARSKWE 876
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNEGDHL-------RNVQTECEALKLQM----------AEKDKVIEILRQQIENMTQLVGQHGRT 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 877 RDEAQVRERKLQEEMALQQEKLatgqEEFRqacerALEARMNFDKRQHEARIQQMENE----IHYLQENLKSMEEIQGLT 952
Cdd:pfam15921 585 AGAMQVEKAQLEKEINDRRLEL----QEFK-----ILKDKKDAKIRELEARVSDLELEkvklVNAGSERLRAVKDIKQER 655
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 953 DLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQvfgldkelKKLKKAVATSDKLATAELTIAKDQLKSLHGT------ 1026
Cdd:pfam15921 656 DQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM--------ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamk 727
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1027 -VMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLqnllrqKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMER 1105
Cdd:pfam15921 728 vAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL------KEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
810
....*....|...
gi 2217375230 1106 QRTEIARLQNVLD 1118
Cdd:pfam15921 802 LKEKVANMEVALD 814
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
572-776 |
2.96e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 572 MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanEALK--KDLEGVISGLQ--EYLGTI 647
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--------ERLEpwGNFDLDLSLLLgfKYVSVF 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 648 KGQATQAQNECRKLRDEKETLLqrltEVEQERDQLEIVAM----DAENMRKELAELEsaLQEQHEvnaslqQTQGDLSAY 723
Cdd:PRK05771 149 VGTVPEDKLEELKLESDVENVE----YISTDKGYVYVVVVvlkeLSDEVEEELKKLG--FERLEL------EEEGTPSEL 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 724 EAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAEL--EKERQALKNALGK 776
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLeiELERAEALSKFLK 271
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1926-2122 |
3.21e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1926 DISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQK 2005
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2006 ------SKLDQVL---------------SKVLAAEERVRTLQEEERwcESLEKTLSQTKRQLSEREQQLveksGELLALQ 2064
Cdd:COG3883 97 rsggsvSYLDVLLgsesfsdfldrlsalSKIADADADLLEELKADK--AELEAKKAELEAKLAELEALK----AELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375230 2065 KEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSS 2122
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1368-1620 |
3.22e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1368 KRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESlmteleiekslkhhEDIVDEIECIEKTL 1447
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA--------------KLLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1448 LKRRSELREADRLLAEAESELSCTKEKTKNAVEK--FTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQAdak 1525
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA--- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1526 dleqhkikqeEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEV---LLQAKRAELE 1602
Cdd:COG3206 306 ----------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVareLYESLLQRLE 375
|
250
....*....|....*...
gi 2217375230 1603 KLKSQVTSQQQEMAVLDR 1620
Cdd:COG3206 376 EARLAEALTVGNVRVIDP 393
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1661-1887 |
3.37e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1661 IREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQ 1740
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1741 RVSELEKTQVAVLEEKLELENLQQISQQQKGEI----EWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKcd 1816
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL-- 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 1817 iwEKKLAQTKRVLAAAEENskmEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1887
Cdd:COG4942 180 --LAELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
580-986 |
3.57e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 580 EQQLDIMNKQYQQLESRLDE--ILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGV-----ISGLQEYLGTIKgQAT 652
Cdd:COG3096 285 ERALELRRELFGARRQLAEEqyRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALrqqekIERYQEDLEELT-ERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 653 QAQNECRKLRDEKETLLQ-RLTEVEQERDQLeivamdaenmRKELAELESALQEQHEVNASLQQTQGDLSAYEAELE-AR 730
Cdd:COG3096 364 EEQEEVVEEAAEQLAEAEaRLEAAEEEVDSL----------KSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGlPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 731 LNLRDAEANQ--LKEELEKVT-RLTQLEQ-----SALQAELEKERQALKNALGKAQFSE--EKEQENSELHAKLKHLQDD 800
Cdd:COG3096 434 LTPENAEDYLaaFRAKEQQATeEVLELEQklsvaDAARRQFEKAYELVCKIAGEVERSQawQTARELLRRYRSQQALAQR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 801 NNLLKQQLKdfqnhlnhvvdglvrpeevaarvdELRRKLklgtgemnihspsdvlgKSLADLQKQFSEILARSKWERDEA 880
Cdd:COG3096 514 LQQLRAQLA------------------------ELEQRL-----------------RQQQNAERLLEEFCQRIGQQLDAA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 881 QVRERKLQEemalQQEKLATGQEEFRQACERALEARMNFDkrQHEARIQQMEN---EIHYLQENLKSMEEIQGLTDLQLQ 957
Cdd:COG3096 553 EELEELLAE----LEAQLEELEEQAAEAVEQRSELRQQLE--QLRARIKELAArapAWLAAQDALERLREQSGEALADSQ 626
|
410 420
....*....|....*....|....*....
gi 2217375230 958 EADEEKERILAQLRELEKKKKLEDAKSQE 986
Cdd:COG3096 627 EVTAAMQQLLEREREATVERDELAARKQA 655
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
76-181 |
3.62e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 45.04 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 76 SHAGVRYITEALikklTKQDNLALIKSLNLSLSKDGGKKFKyiENLEKCVKLEVLNLSYNLIGK--IEKLDKLLK----- 148
Cdd:cd00116 178 GDAGIRALAEGL----KANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLTDagAAALASALLspnis 251
|
90 100 110
....*....|....*....|....*....|....*....
gi 2217375230 149 LRELNLSYNKI------SKIEGIENMCNLQKLNLAGNEI 181
Cdd:cd00116 252 LLTLSLSCNDItddgakDLAEVLAEKESLLELDLRGNKF 290
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1973-2190 |
4.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1973 QKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLS---KVLAAEERVRTLQEEERwceSLEKTLSQTKRQLSER 2049
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAlerRIAALARRIRALEQELA---ALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2050 EQQLVEKSGE----LLALQKEADSMRADFSLLRNQFLTERKKAE------KQVASLKEALKIQRSQLEKNLLTINEDSER 2119
Cdd:COG4942 96 RAELEAQKEElaelLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 2120 DSSLLSKEQKQENScIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDA 2190
Cdd:COG4942 176 LEALLAELEEERAA-LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1875-2163 |
4.64e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1875 QQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVL--LSEQTRLQKDISEWanrfedcQKEEETKQQQLQvlq 1952
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASA-------EREIAELEAELE--- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1953 nEIEENKLKLVQQEMMFQRLQKERESEESKLETskvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQE---EE 2029
Cdd:COG4913 679 -RLDASSDDLAALEEQLEELEAELEELEEELDE----LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2030 RWCESL-EKTLSQTKRQLSEREQQLVEKsgellaLQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIqRSQLEK 2108
Cdd:COG4913 754 RFAAALgDAVERELRENLEERIDALRAR------LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLAL-LDRLEE 826
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 2109 NLLTINEDserdssllsKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQM 2163
Cdd:COG4913 827 DGLPEYEE---------RFKELLNENSIEFVADLLSKLRRAIREIKERIDPLNDS 872
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1813-2241 |
4.88e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1813 EKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEEL 1892
Cdd:TIGR00618 173 FPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1893 ANVQDHLNLAKQDLLHTTKHQDVLLS-EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQR 1971
Cdd:TIGR00618 253 EEQLKKQQLLKQLRARIEELRAQEAVlEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1972 LQKERESEESKlETSKVTLKEQQHQLEKELTDQKSKLDQvLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQ 2051
Cdd:TIGR00618 333 HVKQQSSIEEQ-RRLLQTLHSQEIHIRDAHEVATSIREI-SCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2052 QLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQ---------RSQLEKNLLTINEDSERDSS 2122
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLqesaqslkeREQQLQTKEQIHLQETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2123 LLSK--EQKQENSCIQKEMAT---IELVAQDNHE-----------RARRLMKELNQMQYEYTELKKQMANQKDLERRQME 2186
Cdd:TIGR00618 491 VVLArlLELQEEPCPLCGSCIhpnPARQDIDNPGpltrrmqrgeqTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 2187 ISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2241
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1345-2198 |
4.90e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 4.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1345 SRLEDIMQhlkSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEceveelhrtvqkrqqqkdfidgnvESLMTEL 1424
Cdd:pfam01576 1 TRQEEEMQ---AKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQ------------------------EQLQAET 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1425 EiekslkhhedIVDEIECIEKTLLKRRSELREadrLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQ 1504
Cdd:pfam01576 54 E----------LCAEAEEMRARLAARKQELEE---ILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQ 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1505 ETAVNLVKADQQLRSLQADAKDLEQhkikQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIE-MAERNEDHH 1583
Cdd:pfam01576 121 KLQLEKVTTEAKIKKLEEDILLLED----QNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEaMISDLEERL 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1584 LQVLKESEVLLQAKR---AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQ---AKADLQEALRLGETEVTEK 1657
Cdd:pfam01576 197 KKEEKGRQELEKAKRkleGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaQKNNALKKIRELEAQISEL 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1658 CNHIREVKSLLEELSFQKGELNVQISERKTQLtlikqEIEKEEENLQVVLRqmSKHKTELKNILDMLQLE--NHE--LQG 1733
Cdd:pfam01576 277 QEDLESERAARNKAEKQRRDLGEELEALKTEL-----EDTLDTTAAQQELR--SKREQEVTELKKALEEEtrSHEaqLQE 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1734 LKLQHDQRVSEL--------------EKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESralqs 1799
Cdd:pfam01576 350 MRQKHTQALEELteqleqakrnkanlEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSES----- 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1800 cveclSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLS-------LHNDIS 1872
Cdd:pfam01576 425 -----ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNlstrlrqLEDERN 499
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1873 AMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1952
Cdd:pfam01576 500 SLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQ 579
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1953 NEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWC 2032
Cdd:pfam01576 580 QELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTN 659
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2033 ES---------------------LEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQ 2091
Cdd:pfam01576 660 KQlraemedlvsskddvgknvheLERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQ 739
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2092 VASLKEALKIQRSQLEKNLltinEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELK 2171
Cdd:pfam01576 740 GEEKRRQLVKQVRELEAEL----EDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELE 815
|
890 900
....*....|....*....|....*..
gi 2217375230 2172 KQMANQKDLERRQMEISDAMRTLKSEV 2198
Cdd:pfam01576 816 EARASRDEILAQSKESEKKLKNLEAEL 842
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
588-1142 |
5.41e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 588 KQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISGLQEyLGTIKGQATQAQNECRKLRDEKET 667
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPE--------LREELEKLEKEVKE-LEELKEEIEELEKELESLEGSKRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 668 LLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEK 747
Cdd:PRK03918 257 LEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 748 VTRLTQLEQsaLQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNnlLKQQLKDFQNHLNHVVDGLVRPEE 827
Cdd:PRK03918 337 EERLEELKK--KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 828 VAARVDELRRKLKLGTGEM-NIHSPSDVLGKSL-----ADLQKQFSEILARSKWERDEAQVRERKLQE-----EMALQQE 896
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELkKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERKLRKelrelEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 897 KLATGQEEFRQACERALEARMNFDKRQHEARIQQMENeihyLQENLKSME-EIQGLTD--LQLQEADEEKERILAQLREL 973
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK----LKEKLIKLKgEIKSLKKelEKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 974 EKKKKLEDAKSQEQVFGLDKELKKLKKAVAT------SDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRK 1047
Cdd:PRK03918 569 EEELAELLKELEELGFESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1048 AAQAARDLTRAEAEiELLQNLLRQKGEQFRLEMEKtgvgTGANSQVLEIEKLNETMERQRTEIARLQNVLDLtgsdnkgg 1127
Cdd:PRK03918 649 LEELEKKYSEEEYE-ELREEYLELSRELAGLRAEL----EELEKRREEIKKTLEKLKEELEEREKAKKELEK-------- 715
|
570
....*....|....*
gi 2217375230 1128 FENVLEEIAELRREV 1142
Cdd:PRK03918 716 LEKALERVEELREKV 730
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1331-1972 |
5.59e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 5.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1331 HCNVPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECE---VEELHRTVQKRQ 1407
Cdd:TIGR00618 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQrrlLQTLHSQEIHIR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1408 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1487
Cdd:TIGR00618 359 DAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1488 SLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKiVAAKDSDFQCLSKKKEK------ 1561
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLA-RLLELQEEPCPLCGSCIhpnpar 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1562 -LTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAK 1640
Cdd:TIGR00618 518 qDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1641 ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTEL--- 1717
Cdd:TIGR00618 598 DLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELlas 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1718 -KNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESra 1796
Cdd:TIGR00618 678 rQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV-- 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1797 lqscveclSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdisAMQQ 1876
Cdd:TIGR00618 756 --------LKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILN---LQCE 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1877 QLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQkdisewanrfedcqkEEETKQQQLQVLQNEIE 1956
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKII---------------QLSDKLNGINQIKIQFD 889
|
650
....*....|....*.
gi 2217375230 1957 ENKLKLVQQEMMFQRL 1972
Cdd:TIGR00618 890 GDALIKFLHEITLYAN 905
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
458-686 |
5.80e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 458 LEDKEKKISAAQTRLSELHDE----IEKAEQQILRATEEFKQLEeaIQLKKISEAgkdllykqlsgrlqlVNKLRQEALD 533
Cdd:PHA02562 204 IEEQRKKNGENIARKQNKYDElveeAKTIKAEIEELTDELLNLV--MDIEDPSAA---------------LNKLNTAAAK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 534 LELQMEKQkqeiagkQKEIKDLQ------IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 607
Cdd:PHA02562 267 IKSKIEQF-------QKVIKMYEkggvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKL 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375230 608 TEEIKDLEEQltEGQIAANEALKKDLEGVISGLQEYLGTIKGqatqaqnECRKLRDEKETLLQRLTEVEQERDQLEIVA 686
Cdd:PHA02562 340 LELKNKISTN--KQSLITLVDKAKKVKAAIEELQAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVT 409
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1373-2100 |
5.98e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 5.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1373 KEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQQKDfidgnveslmtELEIEKSLKHHEDIVDEIECIEKTLLKRRS 1452
Cdd:COG4913 235 DDLERAHEALEDAREQIELLE-PIRELAERYAAARERLA-----------ELEYLRAALRLWFAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1453 ELREADRLLAEAESELsctkektKNAVEKFTDAKRSLLQTESDA-EELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1531
Cdd:COG4913 303 ELARLEAELERLEARL-------DALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1532 IKQEEILKEINKIVAAKdsdfqclskkKEKLTEELQKLQKDIEMAERNEDHHLQVLKEsevlLQAKRAELEKLKSQVTSQ 1611
Cdd:COG4913 376 PASAEEFAALRAEAAAL----------LEALEEELEALEEALAEAEAALRDLRRELRE----LEAEIASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1612 QQEM-AVLDRQLGHKKEELHLLqGSMVQAKADLQE------------ALRLgetEVTEKcnHIREVKSLLEELSFqKGEL 1678
Cdd:COG4913 442 LLALrDALAEALGLDEAELPFV-GELIEVRPEEERwrgaiervlggfALTL---LVPPE--HYAAALRWVNRLHL-RGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1679 NVQiserktqltlikqeiekeeeNLQVVLRQMSKHKTELKNILDMLQLENHELQG-LKLQHDQR--------VSELEKTQ 1749
Cdd:COG4913 515 VYE--------------------RVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRfdyvcvdsPEELRRHP 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1750 VAVLEEKlelenlqQISQ-QQKGEIEWQKQL-------------LERDKREIERMTAESRALQSCVECLSKEKEDLQEKC 1815
Cdd:COG4913 575 RAITRAG-------QVKGnGTRHEKDDRRRIrsryvlgfdnrakLAALEAELAELEEELAEAEERLEALEAELDALQERR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1816 DIWEKKLAQTkrvlaaaeenskMEQSNLEKLELNVRKLQQELDQLNRDklslHNDISAMQQQLQEKREAVNSLQEELAnv 1895
Cdd:COG4913 648 EALQRLAEYS------------WDEIDVASAEREIAELEAELERLDAS----SDDLAALEEQLEELEAELEELEEELD-- 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1896 qdhlnlakqdllhttkhqdvllseqtRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVqQEMMFQRLQKE 1975
Cdd:COG4913 710 --------------------------ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL-EERFAAALGDA 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1976 RESEESK-LETSKVTLKEQQHQLEKELTDQKSKLDQV-LSKVLAAEERVRTLQEEERWCESLEktlsqtkrqlserEQQL 2053
Cdd:COG4913 763 VERELREnLEERIDALRARLNRAEEELERAMRAFNREwPAETADLDADLESLPEYLALLDRLE-------------EDGL 829
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 2217375230 2054 VEKSGELLALQKEAdsMRADFSLLRNQFLTERKKAEKQVASLKEALK 2100
Cdd:COG4913 830 PEYEERFKELLNEN--SIEFVADLLSKLRRAIREIKERIDPLNDSLK 874
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
526-966 |
6.65e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 6.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 526 KLRQEALDLELQMEkqkQEIAGKQKeikdLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIA 605
Cdd:pfam01576 100 KMQQHIQDLEEQLD---EEEAARQK----LQLEKVTTEAKIKK---LEEDILLLEDQNSKLSKERKLLEERISEFTSNLA 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 606 KETEEIK--------------DLEEQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLL 669
Cdd:pfam01576 170 EEEEKAKslsklknkheamisDLEERLKkeEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 670 QRLTEVEQERDQLEIVAMDAENMRKELAE-LESALQEQHEVNASLQQTQGDLSAYEAELEARLNL----------RDAEA 738
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEdLESERAARNKAEKQRRDLGEELEALKTELEDTLDTtaaqqelrskREQEV 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 739 NQLKEELEKVTR--------LTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQD-------DNNL 803
Cdd:pfam01576 330 TELKKALEEETRsheaqlqeMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQakqdsehKRKK 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 804 LKQQLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLKLGTGEMN-IHSPSDVLGKSLADLQKQF---SEILARSKWERDE 879
Cdd:pfam01576 410 LEGQLQELQARLS---ESERQRAELAEKLSKLQSELESVSSLLNeAEGKNIKLSKDVSSLESQLqdtQELLQEETRQKLN 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 880 AQVRERKLQEEMALQQEKLATgQEEFRQACERALEArMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEA 959
Cdd:pfam01576 487 LSTRLRQLEDERNSLQEQLEE-EEEAKRNVERQLST-LQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEK 564
|
....*..
gi 2217375230 960 DEEKERI 966
Cdd:pfam01576 565 AAAYDKL 571
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1506-1691 |
7.49e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 7.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1506 TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQ 1585
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1586 VLKES--------------EVLLQAK-------RAE-LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADL 1643
Cdd:COG3883 87 ELGERaralyrsggsvsylDVLLGSEsfsdfldRLSaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2217375230 1644 QEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTL 1691
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1371-1685 |
8.05e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 8.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1371 SEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDfiDGNVESLMTELE-------IEKSLKHHEDIVDEIECI 1443
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQPVEgsphvetIEEDRERVEELEAELEDL 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1444 EKTLLKRRSELREADRLlAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAvnlVKADQQlrslQAD 1523
Cdd:PRK02224 488 EEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE---AEAEEK----REA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1524 AKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSK------KKEKLTEELQKLQ-KDIEMAERNEDH--HLQVLKESEVLL 1594
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaAIADAEDEIERLReKREALAELNDERreRLAEKRERKREL 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1595 QAK--RAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGS--MVQAKADLQEALRLGETEVTEKCNHIREVKSLLEE 1670
Cdd:PRK02224 640 EAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigAVENELEELEELRERREALENRVEALEALYDEAEE 719
|
330
....*....|....*
gi 2217375230 1671 LSFQKGELNVQISER 1685
Cdd:PRK02224 720 LESMYGDLRAELRQR 734
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1824-2170 |
8.67e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 8.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1824 QTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAK 1903
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1904 QDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKL 1983
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1984 ETSKVTLKEQQHQLEKELTDQKSKLDQ---VLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGEL 2060
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKlieSLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2061 LALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMA 2140
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELA 340
|
330 340 350
....*....|....*....|....*....|
gi 2217375230 2141 TIELVAQDNHERARRLMKELNQMQYEYTEL 2170
Cdd:COG4372 341 DLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1841-2214 |
8.76e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 8.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1841 SNLEKLELNVRKLQQELDQLNRDKLSLhnDISAMQQQLQEKREAVNSLQEELANVQDHlnlaKQDLLHTTKHQDVLLSEQ 1920
Cdd:COG5022 787 VDYELKWRLFIKLQPLLSLLGSRKEYR--SYLACIIKLQKTIKREKKLRETEEVEFSL----KAEVLIQKFGRSLKAKKR 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1921 TRLQKDisewANRFEDCQKEEETKQQQLQVLQNEIEE-NKLKLVQQEMMFQRLQKERESEESKLETSKVTLKE----QQH 1995
Cdd:COG5022 861 FSLLKK----ETIYLQSAQRVELAERQLQELKIDVKSiSSLKLVNLELESEIIELKKSLSSDLIENLEFKTELiarlKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1996 QLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFS 2075
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTK 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2076 LL--RNQFLTERKKAEKQVASLKEALKIQRSQLE---KNLLTINEDSERDSSLLskeqkqenscIQKEMATIELVAQDNH 2150
Cdd:COG5022 1017 QLkeLPVEVAELQSASKIISSESTELSILKPLQKlkgLLLLENNQLQARYKALK----------LRRENSLLDDKQLYQL 1086
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 2151 ERARRLMKELNqmqyeytELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLP 2214
Cdd:COG5022 1087 ESTENLLKTIN-------VKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLE 1143
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
461-556 |
8.95e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 8.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 461 KEKKISAAQtrlSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNKLRQEALDLELQMEK 540
Cdd:PRK12704 55 KKEALLEAK---EEIHKLRNEFEKELRERRNELQKLEKRLLQKE----------ENLDRKLELLEKREEELEKKEKELEQ 121
|
90
....*....|....*.
gi 2217375230 541 QKQEIAGKQKEIKDLQ 556
Cdd:PRK12704 122 KQQELEKKEEELEELI 137
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
526-783 |
9.43e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 9.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 526 KLRQEALDLEL--QMEK-QKQEIAGKQKEIKDLQIAIDSLDSKdpkhshMKAQKSGKEQQldimNKQYQQLESRLDEILS 602
Cdd:PHA02562 154 KLVEDLLDISVlsEMDKlNKDKIRELNQQIQTLDMKIDHIQQQ------IKTYNKNIEEQ----RKKNGENIARKQNKYD 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 603 RIAKETEEIKDLEEQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE--TLLQ-------RLT 673
Cdd:PHA02562 224 ELVEEAKTIKAEIEELTD-ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQqisegpdRIT 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 674 EVEQERDQLEIVAMDAENMRKELAELESALQEQ----HEVNASLQQTQGDLSAYeaelearlnlrDAEANQLKEELEKVT 749
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskklLELKNKISTNKQSLITL-----------VDKAKKVKAAIEELQ 371
|
250 260 270
....*....|....*....|....*....|....
gi 2217375230 750 RLTQLEQSALqAELEKERQALKNAlgKAQFSEEK 783
Cdd:PHA02562 372 AEFVDNAEEL-AKLQDELDKIVKT--KSELVKEK 402
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1793-2021 |
9.54e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 9.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1793 ESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLnRDKLSlhNDIS 1872
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER-REELG--ERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1873 AMQQQlqekrEAVNSLQEELANVQDHlnlakQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1952
Cdd:COG3883 94 ALYRS-----GGSVSYLDVLLGSESF-----SDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375230 1953 NEIEENKLKLvqqemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEER 2021
Cdd:COG3883 164 AELEAAKAEL-------EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1778-2200 |
1.04e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1778 QLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQsnleklelnvrkLQQEL 1857
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA------------LEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1858 DQLNRDKLSLHNDIsamqQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvllseqtrlqkdISEWANRFEDC 1937
Cdd:COG4717 142 AELPERLEELEERL----EELRELEEELEELEAELAELQEELEELLEQLSLATEEE-------------LQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1938 QKEEETKQQQLQVLQNEIE--ENKLKLVQQEMMFQRLQKERESEESKLE-TSKVTLKEQQHQLEKELTDQKSKLDQVLSK 2014
Cdd:COG4717 205 QQRLAELEEELEEAQEELEelEEELEQLENELEAAALEERLKEARLLLLiAAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2015 VLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQlveksgELLALQKEADSMRADFSLLRNQFLTERKKAEKQVAS 2094
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELE------ELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2095 LKEALKIQRSQLEKNLLTINEDSERDSSLLSK-EQKQENSCIQKEMATIE--LVAQDNHERARRLMKELNQMQYEYTELK 2171
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAAlEQAEEYQELKEELEELEeqLEELLGELEELLEALDEEELEEELEELE 438
|
410 420
....*....|....*....|....*....
gi 2217375230 2172 KQManqKDLERRQMEISDAMRTLKSEVKD 2200
Cdd:COG4717 439 EEL---EELEEELEELREELAELEAELEQ 464
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1805-2317 |
1.16e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1805 SKEKEDLQEKCDIweKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRdklSLHNDISAMQQQLQEKREa 1884
Cdd:PRK01156 149 AQRKKILDEILEI--NSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKK---QIADDEKSHSITLKEIER- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1885 vnsLQEELANVQDHLNLAKQDLlhttKHQDVLLSEQTRLQKDISEWANRFEDcQKEEETKQQQLQVLQNEIEENKLKLVQ 1964
Cdd:PRK01156 223 ---LSIEYNNAMDDYNNLKSAL----NELSSLEDMKNRYESEIKTAESDLSM-ELEKNNYYKELEERHMKIINDPVYKNR 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1965 QEMM-FQRLQKERESEESKLETSKVTLkEQQHQLEKELTDQKSKLDQVLSKVLAAEE---RVRTLQEEERWCESLEKTLS 2040
Cdd:PRK01156 295 NYINdYFKYKNDIENKKQILSNIDAEI-NKYHAIIKKLSVLQKDYNDYIKKKSRYDDlnnQILELEGYEMDYNSYLKSIE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2041 QTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASL---KEALKIQRSQLEKNLLTINEDS 2117
Cdd:PRK01156 374 SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLnqrIRALRENLDELSRNMEMLNGQS 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2118 ----------ERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMK--------ELNQMQYEYTELKKQMANQKD 2179
Cdd:PRK01156 454 vcpvcgttlgEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKrkeyleseEINKSINEYNKIESARADLED 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2180 LERRQMEISDA----------MRTLKSEVKDEIRTSLKNLNQFLPELpaDLEAILERNENLEGELESLKENLPFTMNEGP 2249
Cdd:PRK01156 534 IKIKINELKDKhdkyeeiknrYKSLKLEDLDSKRTSWLNALAVISLI--DIETNRSRSNEIKKQLNDLESRLQEIEIGFP 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2250 FEEKLNFSQVHIMDEHWRG-----------EALREKLRHREDRLK---AQLRHCMSKQAEVLIKGKrQTEGTLHSLRRQV 2315
Cdd:PRK01156 612 DDKSYIDKSIREIENEANNlnnkyneiqenKILIEKLRGKIDNYKkqiAEIDSIIPDLKEITSRIN-DIEDNLKKSRKAL 690
|
..
gi 2217375230 2316 DA 2317
Cdd:PRK01156 691 DD 692
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1541-2000 |
1.20e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1541 INKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKEsevlLQAKRAELEKLKSQVTSQQQEMAVLDR 1620
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1621 QLGHKkeelhllqgSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEE 1700
Cdd:COG4717 124 LLQLL---------PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1701 ENLQVVLRQMSKHKTELKNILDMLQ---------LENHELQGLKLQHDQRVSELEKTQVAV----------LEEKLELEN 1761
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQeeleeleeeLEQLENELEAAALEERLKEARLLLLIAaallallglgGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1762 LQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQS 1841
Cdd:COG4717 275 IAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1842 NLEKL--ELNVRKLQQELDQL-NRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvLLS 1918
Cdd:COG4717 355 EAEELeeELQLEELEQEIAALlAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1919 EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLvQQEMMFQRLQkERESEESKLETSKVTLKEQQHQLE 1998
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ-ELEELKAELR-ELAEEWAALKLALELLEEAREEYR 510
|
..
gi 2217375230 1999 KE 2000
Cdd:COG4717 511 EE 512
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1455-2009 |
1.20e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1455 READRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLE---QHK 1531
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKmslQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1532 IKQEEILKEinkivaakdsDFQCLSKKKEKLTEElqklqKDIEMAERNEDH--HLQVLKESEVLLQAKRAELEKLKSQVT 1609
Cdd:pfam05483 309 MSTQKALEE----------DLQIATKTICQLTEE-----KEAQMEELNKAKaaHSFVVTEFEATTCSLEELLRTEQQRLE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1610 SQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALR-LGETEVTEKCNhiREVKSLLEELSFQKGELNVQISERKTQ 1688
Cdd:pfam05483 374 KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKiLAEDEKLLDEK--KQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1689 LTLIKQEIEKEEENLQVVLRQMSKHKTELknildmlqlENHELQGLKLQHDQRVSELEK---TQVAVLEEKLELENLQQI 1765
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTEL---------EKEKLKNIELTAHCDKLLLENkelTQEASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1766 SQQQKGEIEWQKQLLERDKREiermTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEK 1845
Cdd:pfam05483 523 INCKKQEERMLKQIENLEEKE----MNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1846 LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQ----DHLNLAKQDLLHTTKHQDVLLSEQT 1921
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKqkfeEIIDNYQKEIEDKKISEEKLLEEVE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1922 RLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLetsKVTLKEQQHQLEKEL 2001
Cdd:pfam05483 679 KAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSA---KAALEIELSNIKAEL 755
|
....*...
gi 2217375230 2002 TDQKSKLD 2009
Cdd:pfam05483 756 LSLKKQLE 763
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1777-2241 |
1.25e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1777 KQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQE 1856
Cdd:pfam10174 288 KNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1857 LDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLnlakqdllhttKHQDvllseqtrlqKDISEWANRFED 1936
Cdd:pfam10174 368 LQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQL-----------RDKD----------KQLAGLKERVKS 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1937 CQKEEETKQQQLQVLQNEIEEnklklvqQEMMFQRLQKERESEESKletskvtLKEQQHQLEKELTDQKSKLDQVLSKVL 2016
Cdd:pfam10174 427 LQTDSSNTDTALTTLEEALSE-------KERIIERLKEQREREDRE-------RLEELESLKKENKDLKEKVSALQPELT 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2017 AAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMrADFSLLRNQFLTERKKAEKQVASLK 2096
Cdd:pfam10174 493 EKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNA-EEAVRTNPEINDRIRLLEQEVARYK 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2097 EALKIQRSQLEKnLLTINEDSERDSSLLSKEQKQENSCIQKEMATiELVAQDNHERARRLMKELNQMQYEYTELKKQMAN 2176
Cdd:pfam10174 572 EESGKAQAEVER-LLGILREVENEKNDKDKKIAELESLTLRQMKE-QNKKVANIKHGQQEMKKKGAQLLEEARRREDNLA 649
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 2177 QKDLERRQMEISDAMRTLKSEVkDEIRTSLKNLNQFLPELPADLEAI-LERNENLEGELESLKENL 2241
Cdd:pfam10174 650 DNSQQLQLEELMGALEKTRQEL-DATKARLSSTQQSLAEKDGHLTNLrAERRKQLEEILEMKQEAL 714
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1512-1615 |
1.30e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1512 KADQQLRSLQADAKD-LEQHKIKQEEILKEinKIVAAKD------SDFQCLSKKKEKlteELQKLQKDIEMAERNEDHHL 1584
Cdd:PRK12704 28 IAEAKIKEAEEEAKRiLEEAKKEAEAIKKE--ALLEAKEeihklrNEFEKELRERRN---ELQKLEKRLLQKEENLDRKL 102
|
90 100 110
....*....|....*....|....*....|.
gi 2217375230 1585 QVLKESEVLLQAKRAELEKLKSQVTSQQQEM 1615
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEEL 133
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1370-2245 |
1.35e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1370 QSEKEMEELHHNIDDLLQEKKSLE-CE--VEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHedivdeiecIEKT 1446
Cdd:TIGR01612 901 EINKSIEEEYQNINTLKKVDEYIKiCEntKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDK---------FDNT 971
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1447 LLKRRSELREADRllaeaESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVkaDQQLRSLQADAKD 1526
Cdd:TIGR01612 972 LIDKINELDKAFK-----DASLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDI--EQKIEDANKNIPN 1044
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1527 LEQ------HKIkQEEILKEINK--------IVAAKDSDFQCLSKKKEKL----------------TEELQKLQKDIEMA 1576
Cdd:TIGR01612 1045 IEIaihtsiYNI-IDEIEKEIGKniellnkeILEEAEINITNFNEIKEKLkhynfddfgkeenikyADEINKIKDDIKNL 1123
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1577 ERNEDHHLQVLKESEvllqaKRAE--LEKLKSQVTSQQQemaVLDRQLGHKK-EELHLLQGSMVqakadlqealrlgeTE 1653
Cdd:TIGR01612 1124 DQKIDHHIKALEEIK-----KKSEnyIDEIKAQINDLED---VADKAISNDDpEEIEKKIENIV--------------TK 1181
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1654 VTEKCNHIREVKSLLEELSfqkgelnvQISERKTQLTLIKQEIEKEEENL-QVVLRQMSKHKTELKNILDMLQLENHELQ 1732
Cdd:TIGR01612 1182 IDKKKNIYDEIKKLLNEIA--------EIEKDKTSLEEVKGINLSYGKNLgKLFLEKIDEEKKKSEHMIKAMEAYIEDLD 1253
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1733 GLKLQHDQRVSELektqvavleeklelenlqQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQ 1812
Cdd:TIGR01612 1254 EIKEKSPEIENEM------------------GIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFS 1315
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1813 EKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLEL-NVRKLQQeldqlnrdklsLHNDISAMQQQLQEKREAVNSLQEE 1891
Cdd:TIGR01612 1316 EESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIyNILKLNK-----------IKKIIDEVKEYTKEIEENNKNIKDE 1384
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1892 LANVQDHLNLAKQDL-LHTTKHQdvllSEQTRLQKDISEWANRFEDCQK---EEETKQQQLQVLQNEIEENKLKLVQQ-E 1966
Cdd:TIGR01612 1385 LDKSEKLIKKIKDDInLEECKSK----IESTLDDKDIDECIKKIKELKNhilSEESNIDTYFKNADENNENVLLLFKNiE 1460
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1967 MMFQR----LQKERESEESKLETSKVTLKEQQHQLEKELTD-QKSKLDQVLSKVLAAEERVRTLQEEERWCE-SLEKTLS 2040
Cdd:TIGR01612 1461 MADNKsqhiLKIKKDNATNDHDFNINELKEHIDKSKGCKDEaDKNAKAIEKNKELFEQYKKDVTELLNKYSAlAIKNKFA 1540
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2041 QTKRQLSEREQQLVEKSGELLAlqkEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRS--QLEKNLLTINEDSE 2118
Cdd:TIGR01612 1541 KTKKDSEIIIKEIKDAHKKFIL---EAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSleNFENKFLKISDIKK 1617
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2119 RDSSLLSkeqkqENSCIQKEMATIELVAQDNheRARRLMKELNQMQYEYTELKKQmanQKDLERRQMEISDAMRTLKSeV 2198
Cdd:TIGR01612 1618 KINDCLK-----ETESIEKKISSFSIDSQDT--ELKENGDNLNSLQEFLESLKDQ---KKNIEDKKKELDELDSEIEK-I 1686
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 2217375230 2199 KDEIRTSLKNLNQFLpelpadLEAILERNENLEGELESLKENLPFTM 2245
Cdd:TIGR01612 1687 EIDVDQHKKNYEIGI------IEKIKEIAIANKEEIESIKELIEPTI 1727
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1443-1603 |
1.44e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1443 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQ--ETAVNLVKADQQLRSL 1520
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1521 QADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAernedhhLQVLKESEVLLQAKRAE 1600
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE-------LAELEAELEELEAEREE 167
|
...
gi 2217375230 1601 LEK 1603
Cdd:COG1579 168 LAA 170
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1336-1531 |
1.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1336 EHHNLENEVSRLEDIMQHLKSKKREERWmraskRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDG 1415
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRL-----ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1416 NveslmtelEIEkSLKHhedivdEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKftdAKRSLLQTESD 1495
Cdd:COG4913 338 D--------RLE-QLER------EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE---AAALLEALEEE 399
|
170 180 190
....*....|....*....|....*....|....*.
gi 2217375230 1496 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1531
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1947-2112 |
1.64e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1947 QLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEqqhqLEKELTDQKSKLDQVLSKVLAAEER----- 2021
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED----LEKEIKRLELEIEEVEARIKKYEEQlgnvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2022 ----VRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKE 2097
Cdd:COG1579 87 nnkeYEALQKEI---ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
170
....*....|....*
gi 2217375230 2098 ALKIQRSQLEKNLLT 2112
Cdd:COG1579 164 EREELAAKIPPELLA 178
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
579-976 |
1.78e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 579 KEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQL---------TEGQIAANEALKKDLEGVISGLQEYLGTIKG 649
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLqaetelcaeAEEMRARLAARKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 650 QATQAQNECRKLRDEKETLLQRLTEVEQERD--QLEIVAMDAE-----------------------NMRKELAELESALQ 704
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklQLEKVTTEAKikkleedillledqnsklskerkLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 705 EQHEVNASLQQTQGDLSAYEAELEARLNlrdaEANQLKEELEKVTRLTQLEQSALQ---AELEKERQALKNALGKaqfse 781
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLK----KEEKGRQELEKAKRKLEGESTDLQeqiAELQAQIAELRAQLAK----- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 782 eKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKL--KLGTGEMNIHSPSDVLGKSL 859
Cdd:pfam01576 241 -KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLgeELEALKTELEDTLDTTAAQQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 860 ADLQKQFSEILARSKWERDEAQVRERKLQEemalQQEKLATGQEEFRQACERALEARMNFDKRQheariQQMENEIHYLQ 939
Cdd:pfam01576 320 ELRSKREQEVTELKKALEEETRSHEAQLQE----MRQKHTQALEELTEQLEQAKRNKANLEKAK-----QALESENAELQ 390
|
410 420 430
....*....|....*....|....*....|....*..
gi 2217375230 940 ENLKSMEEIQgltdlqlQEADEEKERILAQLRELEKK 976
Cdd:pfam01576 391 AELRTLQQAK-------QDSEHKRKKLEGQLQELQAR 420
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1971-2241 |
1.81e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1971 RLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSERE 2050
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2051 QQLVEKSGELLALQKEADSMRADFSLLRNQflTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKeqkq 2130
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEK--VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING---- 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2131 enscIQKEMATIElvaqDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLN 2210
Cdd:PRK03918 326 ----IEERIKELE----EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELE 397
|
250 260 270
....*....|....*....|....*....|.
gi 2217375230 2211 QFLPELPADLEAILERNENLEGELESLKENL 2241
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKAI 428
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
457-812 |
1.85e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 457 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKqleeaIQLKKISEAGKDLLY--KQLSGRLQLVNKLRQEALDL 534
Cdd:TIGR04523 55 ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLK-----KNKDKINKLNSDLSKinSEIKNDKEQKNKLEVELNKL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 535 ELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpkhSHMKAQKSGKEQQLDIMNKQYQQLESRLDEI----------LSRI 604
Cdd:TIGR04523 130 EKQKKENKKNIDKFLTEIKKKEKELEKLNNKY---NDLKKQKEELENELNLLEKEKLNIQKNIDKIknkllklellLSNL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 605 AKETEEIKDLEEQLTEGQiAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEI 684
Cdd:TIGR04523 207 KKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 685 VAMDAENMRKELAELESALQEQ--HEVNASLQQTQGDLSAYEAELeARLNLRDAEANQLKEELEKVTRLTQLEQSALQAE 762
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDwnKELKSELKNQEKKLEEIQNQI-SQNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 763 LEKERQALKNAL----GKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 812
Cdd:TIGR04523 365 LEEKQNEIEKLKkenqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1416-1680 |
1.85e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.91 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1416 NVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEaesELSCTKEKTKNAVEKFTDAKRSLLqtesd 1495
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE---VLIQKFGRSLKAKKRFSLLKKETI----- 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1496 aeelerrAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDfqcLSKKKEKLTEELQKLQKDIEM 1575
Cdd:COG5022 870 -------YLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSD---LIENLEFKTELIARLKKLLNN 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1576 AERNEDHHLQVLKESEVL-LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQ---GSMVQAKADLQEALRLGE 1651
Cdd:COG5022 940 IDLEEGPSIEYVKLPELNkLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKkelAELSKQYGALQESTKQLK 1019
|
250 260 270
....*....|....*....|....*....|..
gi 2217375230 1652 ---TEVTEKCNHIREVKSLLEELSFQKGELNV 1680
Cdd:COG5022 1020 elpVEVAELQSASKIISSESTELSILKPLQKL 1051
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
477-684 |
1.86e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 477 DEIEKAEQQILRATEEFKQLEEAIQ--LKKISE-AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIagkqKEIK 553
Cdd:TIGR01612 1500 DEADKNAKAIEKNKELFEQYKKDVTelLNKYSAlAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKI----KEIK 1575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 554 DLQIAIDsldskDPKHSHMKAQKSGKEQQLDIMNKQYQQLesRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDL 633
Cdd:TIGR01612 1576 KEKFRIE-----DDAAKNDKSNKAAIDIQLSLENFENKFL--KISDIKKKINDCLKETESIEKKISSFSIDSQDTELKEN 1648
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 634 EGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEI 684
Cdd:TIGR01612 1649 GDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEI 1699
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1343-1600 |
1.86e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1343 EVSRLEDIMQHLKSKKREERWMRASKRQSE--KEMEELH--HNIDDLLQEKKSLECEVEELHRTVQKRQQQKdfidGNVE 1418
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADelKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE----ARIE 1595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1419 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1498
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1499 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQK-DIEMAE 1577
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEE 1755
|
250 260
....*....|....*....|...
gi 2217375230 1578 RNEDHHLQVLKESEVLLQAKRAE 1600
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1486-2209 |
1.87e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1486 KRSLLQTESDAEELERRAQEtavNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE 1565
Cdd:pfam05483 91 KKWKVSIEAELKQKENKLQE---NRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARS 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1566 LQKLQKDIEMAERNEDHHLQVLKESEVLLQAkraeLEKLKSQVTSQQQEMAVldrQLGHKKEELHLLQGSMVQAKADLQE 1645
Cdd:pfam05483 168 AEKTKKYEYEREETRQVYMDLNNNIEKMILA----FEELRVQAENARLEMHF---KLKEDHEKIQHLEEEYKKEINDKEK 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1646 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQ 1725
Cdd:pfam05483 241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQ 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1726 LENHELQGLKLQHDQRVSELEKTQVAvleeklelenLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLS 1805
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAA----------HSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKS 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1806 KEKEDLQEKCDIWEKKLAQTKRVLAAaEENSKMEQSNLEKLELNVRKLQQELDQLNRDKlslHNDISAMQQQLQEKREAV 1885
Cdd:pfam05483 391 SELEEMTKFKNNKEVELEELKKILAE-DEKLLDEKKQFEKIAEELKGKEQELIFLLQAR---EKEIHDLEIQLTAIKTSE 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1886 NSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWAnrfedcqkeEETKQQQLQVLQNEIEEnklklvqq 1965
Cdd:pfam05483 467 EHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMT---------LELKKHQEDIINCKKQE-------- 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1966 emmfQRLQKERESeeskLETSKVTLKEQQHQLEKELTDQKsklDQVLSKVLAAEERVRTLQEE----ERWCESLEKTLSQ 2041
Cdd:pfam05483 530 ----ERMLKQIEN----LEEKEMNLRDELESVREEFIQKG---DEVKCKLDKSEENARSIEYEvlkkEKQMKILENKCNN 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2042 TKRQLSEREQQLVEKSGELLALQKEADSMRADFsllrNQFLTERKKAEKQVASLKEALK--IQRSQLEKNLLTINEDSER 2119
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKQL----NAYEIKVNKLELELASAKQKFEeiIDNYQKEIEDKKISEEKLL 674
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2120 DSSLLSKEQKQENSCIQKEmatIELVAQDNHERARRLM-KELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEV 2198
Cdd:pfam05483 675 EEVEKAKAIADEAVKLQKE---IDKRCQHKIAEMVALMeKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNI 751
|
730
....*....|.
gi 2217375230 2199 KDEIRTSLKNL 2209
Cdd:pfam05483 752 KAELLSLKKQL 762
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
608-816 |
1.90e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 608 TEEIKDLEEQLTEGQIAANEALkkdlEGVISGLQEYlgtiKGQATQAQnECRKLRDEKETLLQRL-TEVEQERDQLEIVA 686
Cdd:PRK10929 29 TQELEQAKAAKTPAQAEIVEAL----QSALNWLEER----KGSLERAK-QYQQVIDNFPKLSAELrQQLNNERDEPRSVP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 687 --MDAENMRKELAELESAL--------QEQ---HEVNASLQQTQGDLSayeaelEARLNLRDAEaNQLKEELEKVTRLTQ 753
Cdd:PRK10929 100 pnMSTDALEQEILQVSSQLleksrqaqQEQdraREISDSLSQLPQQQT------EARRQLNEIE-RRLQTLGTPNTPLAQ 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375230 754 LEQSALQAELEKeRQALKNALGKAQFSEEKEQENSELHAKLkhLQDDNNLLKQQLKDFQNHLN 816
Cdd:PRK10929 173 AQLTALQAESAA-LKALVDELELAQLSANNRQELARLRSEL--AKKRSQQLDAYLQALRNQLN 232
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
170-213 |
1.93e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 38.00 E-value: 1.93e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 2217375230 170 NLQKLNLAGNEIEHIPvwLGKKLKSLRVLNLKGN-KISSLQDISK 213
Cdd:pfam12799 2 NLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1837-2130 |
1.93e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1837 KMEQSNLEKLELNVRKLQQ-----------ELDQLNRDKLSLHNDISAMQ----QQLQEKREAVNSLQEELANVQDHLNL 1901
Cdd:PTZ00108 995 KRKEYLLGKLERELARLSNkvrfikhvingELVITNAKKKDLVKELKKLGyvrfKDIIKKKSEKITAEEEEGAEEDDEAD 1074
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1902 AKQDLLHT--TKHQDVLLSEQ-TRLQKDisewanRFEDCQKEEETKQQQLQVLQN-EIEE------NKLKLVQQEMMFQR 1971
Cdd:PTZ00108 1075 DEDDEEELgaAVSYDYLLSMPiWSLTKE------KVEKLNAELEKKEKELEKLKNtTPKDmwledlDKFEEALEEQEEVE 1148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1972 LQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCES---LEKTLSQTKRQLSE 2048
Cdd:PTZ00108 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDkpdNKKSNSSGSDQEDD 1228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2049 REQQLVEKSGELLALQKEAD-----SMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSL 2123
Cdd:PTZ00108 1229 EEQKTKPKKSSVKRLKSKKNnssksSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKK 1308
|
....*..
gi 2217375230 2124 LSKEQKQ 2130
Cdd:PTZ00108 1309 KVKKRLE 1315
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
588-980 |
1.94e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 588 KQYQQLESRLDEILSRIAKETEEIKDLE------EQLTEGQIAAneALKKDLEGVISGLQEYLGTIKGQATQAQNECRKL 661
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQrlhqafSRFIGSHLAV--AFEADPEAELRQLNRRRVELERALADHESQEQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 662 RDEKETLLQRLTEVEQERDQLEIvaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEArlnLRDAEAN-- 739
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNL--LADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSV---LQSDPEQfe 938
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 740 QLKEELEKVTrlTQLEQSALQAELEKERQALKNALG--KAQFSEEKEQENSE-LHAKLKHLQDDNNLLKQQLKDFQNHL- 815
Cdd:PRK04863 939 QLKQDYQQAQ--QTQRDAKQQAFALTEVVQRRAHFSyeDAAEMLAKNSDLNEkLRQRLEQAEQERTRAREQLRQAQAQLa 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 816 --NHVVDGLVRPEEVAAR-VDELRRKLKlgtgEMNIHSPSDVLGKSLADlQKQFSEILARSKWERDEAQVRERKLQEEMA 892
Cdd:PRK04863 1017 qyNQVLASLKSSYDAKRQmLQELKQELQ----DLGVPADSGAEERARAR-RDELHARLSANRSRRNQLEKQLTFCEAEMD 1091
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 893 LQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIH-----YLQ-ENLKSMEEIqGLTDLQLQEADEEKERi 966
Cdd:PRK04863 1092 NLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHrrelaYLSaDELRSMSDK-ALGALRLAVADNEHLR- 1169
|
410
....*....|....
gi 2217375230 967 lAQLRELEKKKKLE 980
Cdd:PRK04863 1170 -DVLRLSEDPKRPE 1182
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
145-206 |
1.95e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 43.27 E-value: 1.95e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375230 145 KLLKLRELNLSYNKIskiEG-----IENMCNLQKLNLAGNEIE-HIPVWLGKkLKSLRVLNLKGNKIS 206
Cdd:PLN03150 440 KLRHLQSINLSGNSI---RGnippsLGSITSLEVLDLSYNSFNgSIPESLGQ-LTSLRILNLNGNSLS 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1850-2240 |
2.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1850 VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISE 1929
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1930 WA--NRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 2007
Cdd:COG4717 128 LPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2008 LDQvlskvlaAEERVRTLQEE-----ERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFS------- 2075
Cdd:COG4717 208 LAE-------LEEELEEAQEEleeleEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILtiagvlf 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2076 ------------LLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDS--SLLSKEQKQENSCIQKEMAT 2141
Cdd:COG4717 281 lvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEllELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2142 IELVAQDNHERARRLMKELN-QMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEV--------KDEIRTSLKNLNQF 2212
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeellealdEEELEEELEELEEE 440
|
410 420
....*....|....*....|....*...
gi 2217375230 2213 LPELPADLEAILERNENLEGELESLKEN 2240
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLEED 468
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
457-705 |
2.18e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 457 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLEL 536
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 537 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKS-----------GKEQQLDIMNKQYQQL---ESRLDEILS 602
Cdd:PRK03918 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEelgfesveeleERLKELEPFYNEYLELkdaEKELEREEK 619
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 603 RIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQL 682
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
250 260
....*....|....*....|...
gi 2217375230 683 EIVAMDAENMRKELAELESALQE 705
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALER 722
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
591-808 |
2.28e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 591 QQLESRLDEILSRIAKETEE---IKDLEEQLTegQIAANEALKKDLEgvisglqeylgTIKGQATQAQNECRKLRDEket 667
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDklvQQDLEQTLA--LLDKIDRQKEETE-----------QLKQQLAQAPAKLRQAQAE--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 668 lLQRLTEveqerDQLEIVAMDAENMrkELAELESALQEqheVNASLQQTQGDLSAYEAE--------------------- 726
Cdd:PRK11281 103 -LEALKD-----DNDEETRETLSTL--SLRQLESRLAQ---TLDQLQNAQNDLAEYNSQlvslqtqperaqaalyansqr 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 727 -------------------------LEARLNLRDAEANQLKEELEKVTRLTQLEQS------ALQAELEKERQALKNALG 775
Cdd:PRK11281 172 lqqirnllkggkvggkalrpsqrvlLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKqrdyltARIQRLEHQLQLLQEAIN 251
|
250 260 270
....*....|....*....|....*....|....*..
gi 2217375230 776 --KAQFSEE--KEQENSELHAKLKHlqddNNLLKQQL 808
Cdd:PRK11281 252 skRLTLSEKtvQEAQSQDEAARIQA----NPLVAQEL 284
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
458-976 |
2.31e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 458 LEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQ 537
Cdd:TIGR00618 302 VTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHI 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 538 MEKQKQEIAGKQKE---------IKDLQIAIDSLDS--------KDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEi 600
Cdd:TIGR00618 382 HTLQQQKTTLTQKLqslckeldiLQREQATIDTRTSafrdlqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH- 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 601 LSRIAKETEEIKDLEEQLTegQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERD 680
Cdd:TIGR00618 461 LQESAQSLKEREQQLQTKE--QIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYA 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 681 QLEIVamdAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQ 760
Cdd:TIGR00618 539 QLETS---EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 761 AELEKERQALKN---ALGKAQFSEEKEQENSELHAKLKHL------------QDDNNLLKQQLKDFQNHLNHVVDGLVRP 825
Cdd:TIGR00618 616 ALLRKLQPEQDLqdvRLHLQQCSQELALKLTALHALQLTLtqervrehalsiRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 826 EEVAARVDELRRKL--KLGTGEMNIHSPSDVLGKSLADLQKQfsEILARSKWERDEAQVRERKLQEEMALQQEKLATGQE 903
Cdd:TIGR00618 696 KEMLAQCQTLLRELetHIEEYDREFNEIENASSSLGSDLAAR--EDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAA 773
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375230 904 EFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQeadEEKERILAQLRELEKK 976
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV---QEEEQFLSRLEEKSAT 843
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1870-2028 |
2.49e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1870 DISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQK--EEETKQQQ 1947
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1948 LQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQE 2027
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELA----ELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
.
gi 2217375230 2028 E 2028
Cdd:COG1579 167 E 167
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1471-1906 |
2.50e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1471 TKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQhKIKQEEILKEINKIVAAKDS 1550
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK-LLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1551 DFQCLSKKKEKLtEELQKLQKDIEMAERNEDHHLQVLKES-EVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEEL 1629
Cdd:COG4717 144 LPERLEELEERL-EELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1630 HLLQGSMVQAKADLQealRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQ 1709
Cdd:COG4717 223 EELEEELEQLENELE---AAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1710 MSKHKTELKNILDMLQLENHELQGLKlqHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIer 1789
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELL--AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAL-- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1790 mtaesralqsCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE-LNVRKLQQELDQLNRDKLSLH 1868
Cdd:COG4717 376 ----------LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaLDEEELEEELEELEEELEELE 445
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2217375230 1869 NDISAMQQQLQEKREAVNSL--QEELANVQDHLNLAKQDL 1906
Cdd:COG4717 446 EELEELREELAELEAELEQLeeDGELAELLQELEELKAEL 485
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
460-800 |
2.79e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 460 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEE---AIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEAldlEL 536
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE---DK 1576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 537 QMEKQKQEIAGKQKEIKdlqiaIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE 616
Cdd:PTZ00121 1577 NMALRKAEEAKKAEEAR-----IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 617 ---QLTEGQIAANEALKKDLEgvisglqeylgtikgqATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMR 693
Cdd:PTZ00121 1652 lkkAEEENKIKAAEEAKKAEE----------------DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 694 KELAELESALQEQhevnaslqqtqgDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKErqalKNA 773
Cdd:PTZ00121 1716 KKAEELKKAEEEN------------KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE----KEA 1779
|
330 340
....*....|....*....|....*..
gi 2217375230 774 LGKAQFSEEKEQENSELHAKLKHLQDD 800
Cdd:PTZ00121 1780 VIEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
455-744 |
3.11e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 43.05 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 455 DTQLEDKEKKISAAQTRLSEL------HDEIEKAEQQILRATEEF-KQLEEAIQLKKISEAGKDllykqlsgrLQLVNKL 527
Cdd:pfam13779 481 DGDLSDAERRLRAAQERLSEAlergasDEEIAKLMQELREALDDYmQALAEQAQQNPQDLQQPD---------DPNAQEM 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 528 RQEALDlelQMEKQKQEIA--GKQKEIKD----LQIAIDSLDSKDPKHSHMKAQKSGKEQQ---LDIMNKQyQQLesrLD 598
Cdd:pfam13779 552 TQQDLQ---RMLDRIEELArsGRRAEAQQmlsqLQQMLENLQAGQPQQQQQQGQSEMQQAMdelGDLLREQ-QQL---LD 624
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 599 EILSRIAKETEEIKDLEEQltEGQiaanealkkDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQe 678
Cdd:pfam13779 625 ETFRQLQQQGGQQQGQPGQ--QGQ---------QGQGQQPGQGGQQPGAQMPPQGGAEALGDLAERQQALRRRLEELQD- 692
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375230 679 rdqlEIVAMDAENMRKELAElesALQEQHEVNASLQQTQGDlSAYEAELEARLNLRD---AEANQLKEE 744
Cdd:pfam13779 693 ----ELKELGGKEPGQALGD---AGRAMRDAEEALGQGDLA-GAVDAQGRALEALRKgaqQLAEAMQQQ 753
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
454-988 |
3.26e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 454 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRAT----EEFKQLEeaiqlkkiseagkdlLYKQLSGRLQlvNKlrq 529
Cdd:pfam10174 231 LQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTedreEEIKQME---------------VYKSHSKFMK--NK--- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 530 ealdlelqMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSH----MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIA 605
Cdd:pfam10174 291 --------IDQLKQELSKKESELLALQTKLETLTNQNSDCKQhievLKESLTAKEQRAAILQTEVDALRLRLEEKESFLN 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 606 KETEEIKDLEEQltEGQIAANEALKKD-----------LEGVISGLQEYLGTIKGQATQAQNECRKLRDEK---ETLLQR 671
Cdd:pfam10174 363 KKTKQLQDLTEE--KSTLAGEIRDLKDmldvkerkinvLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSsntDTALTT 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 672 LTEVEQERDQLeIVAMDAENMRKE---LAELESALQEQHEVNASLQQTQGDLSAYEAELearLNLRDAEANQLKEELEKV 748
Cdd:pfam10174 441 LEEALSEKERI-IERLKEQREREDrerLEELESLKKENKDLKEKVSALQPELTEKESSL---IDLKEHASSLASSGLKKD 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 749 TRLTQLEqSALQAELEkERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEv 828
Cdd:pfam10174 517 SKLKSLE-IAVEQKKE-ECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVEN- 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 829 aarvDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQ-EKLATGQEEFRQ 907
Cdd:pfam10174 594 ----EKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQlEELMGALEKTRQ 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 908 ACErALEARMNFDKRQHEARIQQMENeihYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKledaKSQEQ 987
Cdd:pfam10174 670 ELD-ATKARLSSTQQSLAEKDGHLTN---LRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSKKK----KTQEE 741
|
.
gi 2217375230 988 V 988
Cdd:pfam10174 742 V 742
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1818-1980 |
3.33e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1818 WEKKLAQTKRVLAAAE-----ENSKMEQSNLEKL-ELNVR----KLQQELDQLNRDKLslhNDISAMQQQLQEKREAVNS 1887
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEakrilEEAKKEAEAIKKEaLLEAKeeihKLRNEFEKELRERR---NELQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1888 LQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanRFEDCQK--EEETKQQQLQVLQNEIEENKLKLVQQ 1965
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ---ELERISGltAEEAKEILLEKVEEEARHEAAVLIKE 177
|
170
....*....|....*
gi 2217375230 1966 EMMFQRLQKERESEE 1980
Cdd:PRK12704 178 IEEEAKEEADKKAKE 192
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1703-2091 |
3.37e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1703 LQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENlQQISQQQKGEIEWQKQLLER 1782
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1783 DKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNR 1862
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1863 DKLSLhndisAMQQQLQEKR---------------------------EAVNSLQEELANVQDHLNLAKQDLLHTTKHQDV 1915
Cdd:COG4717 235 ELEAA-----ALEERLKEARlllliaaallallglggsllsliltiaGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1916 LLSEQTRLQKDISEWANRFEDCQKEEET-------KQQQLQVLQNEIE--ENKLKLVQQEMMFQRLQKERESEESKLETS 1986
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEellelldRIEELQELLREAEelEEELQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1987 KVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTlqeeerwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKE 2066
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--------EELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420
....*....|....*....|....*
gi 2217375230 2067 ADSMRADFSLLRNQFLTERKKAEKQ 2091
Cdd:COG4717 462 LEQLEEDGELAELLQELEELKAELR 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1342-1746 |
3.70e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1342 NEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQqkdfIDGNVESLM 1421
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLLPLYQELEA----LEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1422 TELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREA-DRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1499
Cdd:COG4717 146 ERLEeLEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1500 ERRAQETAVNLVKADQQLR---------------SLQADAKDLEQHKIKQEEILKEINKIVAAkdsDFQCLSKKKEKLTE 1564
Cdd:COG4717 226 EEELEQLENELEAAALEERlkearlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLLAL---LFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1565 ELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQemavLDRQLGHKKEELhLLQGSMVQAKADLQ 1644
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE----LLREAEELEEEL-QLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1645 EALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISER--------KTQLTLIKQEIEKEEENLQVVLRQMSKHKTE 1716
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeellealdEEELEEELEELEEELEELEEELEELREELAE 457
|
410 420 430
....*....|....*....|....*....|
gi 2217375230 1717 LKNILDMLQlENHELQGLKLQHDQRVSELE 1746
Cdd:COG4717 458 LEAELEQLE-EDGELAELLQELEELKAELR 486
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
502-807 |
3.71e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 502 LKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDS-----------LDSKDPKHS 570
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEkenkmkdltflLEESRDKAN 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 571 HMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE----------QLTEGQIAANEALKKDLEGVISGL 640
Cdd:pfam05483 272 QLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEdlqiatkticQLTEEKEAQMEELNKAKAAHSFVV 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 641 QEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEV---NASLQQTQ 717
Cdd:pfam05483 352 TEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 718 GDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQL---EQSALQAELEKERqaLKNALGKAQF------SEEKEQENS 788
Cdd:pfam05483 432 EELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHylkEVEDLKTELEKEK--LKNIELTAHCdkllleNKELTQEAS 509
|
330
....*....|....*....
gi 2217375230 789 ELHAKLKHLQDDNNLLKQQ 807
Cdd:pfam05483 510 DMTLELKKHQEDIINCKKQ 528
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1334-1686 |
3.78e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 3.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1334 VPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV---------- 1403
Cdd:PRK03918 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleerhely 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1404 --------QKRQQQKDFIDGNVESLMTELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSC---- 1470
Cdd:PRK03918 365 eeakakkeELERLKKRLTGLTPEKLEKELEeLEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgre 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1471 -TKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKiKQEEILKEINKIVAAKD 1549
Cdd:PRK03918 445 lTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK-ELEEKLKKYNLEELEKK 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1550 sdfqclSKKKEKLTEELQKLQKDIEMAERnEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLD-RQLGHKKEE 1628
Cdd:PRK03918 524 ------AEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKE 596
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 1629 LHLLQGSMVQAKA------DLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERK 1686
Cdd:PRK03918 597 LEPFYNEYLELKDaekeleREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
474-1143 |
3.89e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 474 ELHDEIEKAEQQI-------------LRATEEFKQLEEAIQLKKISEAGK-DLLYKQLSGRLQLVNKLRQEALDLELQME 539
Cdd:pfam02463 174 ALKKLIEETENLAeliidleelklqeLKLKEQAKKALEYYQLKEKLELEEeYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 540 KQKQEIAGKQKEIKDLQIAIDSLDSKdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLT 619
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEK--EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 620 EGQIAANEALKKDLEGVISglQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAEL 699
Cdd:pfam02463 332 KEKEEIEELEKELKELEIK--REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 700 ESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQ--------ALK 771
Cdd:pfam02463 410 LLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQlvklqeqlELL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 772 NALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGL-------VRPEEVAARVDELRRKLKLGTG 844
Cdd:pfam02463 490 LSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENykvaistAVIVEVSATADEVEERQKLVRA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 845 EMNIHSPSDVLGKSLADLQKQFSEILARSKWERD-EAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQ 923
Cdd:pfam02463 570 LTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILnLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 924 HEARIQQMENEIHYLQENLKSMEEIQGLTDlQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVA 1003
Cdd:pfam02463 650 KGVSLEEGLAEKSEVKASLSELTKELLEIQ-ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQ 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1004 TSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEKT 1083
Cdd:pfam02463 729 EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE 808
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1084 GVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRREVS 1143
Cdd:pfam02463 809 ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
439-774 |
3.99e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 439 EQLRNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSEL---HDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkDLLYK 515
Cdd:COG4717 115 REELEKLEKLLQLLPLYQELEALEAELAELPERLEELeerLEELRELEEELEELEAELAELQEELE---------ELLEQ 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 516 QLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDI---------- 585
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglg 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 586 ---------------------------MNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALK--KDLEGV 636
Cdd:COG4717 266 gsllsliltiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelLELLDR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 637 ISGLQEYLGTIKGQATQAQNECrkLRDEKETLLQR--LTEVEQERDQLEIVAmDAENMRKELAELESALQEQHEVNASL- 713
Cdd:COG4717 346 IEELQELLREAEELEEELQLEE--LEQEIAALLAEagVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELl 422
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375230 714 -QQTQGDLSAYEAELEARLNLRDAEANQLKEELEKV-TRLTQLEQSALQAELEKERQALKNAL 774
Cdd:COG4717 423 eALDEEELEEELEELEEELEELEEELEELREELAELeAELEQLEEDGELAELLQELEELKAEL 485
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
86-216 |
4.24e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.57 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 86 ALIKKLTKQDNLALIKSLNLSLSKDGGKKFkyIENLEKCV-KLEVLNLSYNLI--GKIEKLDKLL----KLRELNLSYNK 158
Cdd:cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLL--AKGLKDLPpALEKLVLGRNRLegASCEALAKALranrDLKELNLANNG 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375230 159 ISKiEGIENMC-------NLQKLNLAGNEIEHIPV----WLGKKLKSLRVLNLKGNKISSLqDISKLKP 216
Cdd:cd00116 177 IGD-AGIRALAeglkancNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDA-GAAALAS 243
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
652-787 |
5.02e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 652 TQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAmDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARL 731
Cdd:PRK12705 40 QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR-EREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 732 NLRDAEANQLKEELEKVTRLTQLEQ-----SALQAELEKERQALKNA-LGKAQFSEEKEQEN 787
Cdd:PRK12705 119 LELEELEKQLDNELYRVAGLTPEQArklllKLLDAELEEEKAQRVKKiEEEADLEAERKAQN 180
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
597-705 |
5.66e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 597 LDEILSRIAKET----EEIKDLEEQLTEGQIAAnEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 672
Cdd:COG0542 395 IDEAAARVRMEIdskpEELDELERRLEQLEIEK-EALKKEQD---EASFERLAELRDELAELEEELEALKARWEAEKELI 470
|
90 100 110
....*....|....*....|....*....|...
gi 2217375230 673 TEVEQERDQLEIVAMDAENMRKELAELESALQE 705
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAE 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2090-2241 |
5.80e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2090 KQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTE 2169
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375230 2170 LKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2241
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
569-683 |
6.17e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 40.27 E-value: 6.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 569 HSHMKAQKSGKEQQLDiMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISGLQEyLGTIK 648
Cdd:pfam13851 22 RNNLELIKSLKEEIAE-LKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEE--------LRKQLENYEKDKQS-LKNLK 91
|
90 100 110
....*....|....*....|....*....|....*
gi 2217375230 649 GQATQAQNECRKLRDEKETLLQRLTEVEQERDQLE 683
Cdd:pfam13851 92 ARLKVLEKELKDLKWEHEVLEQRFEKVERERDELY 126
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1516-1734 |
6.66e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1516 QLRSLQADAKDLEQHKIKQEEILKEINKivaakdsdfqcLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQ 1595
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAA-----------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1596 AKRAELEKLKSQVTSQQQEMA----VLDRQLGHKKEELHLLQGSMVQAKAD---LQEALRLGETEVTEKCNHIREVKSLL 1668
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAellrALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375230 1669 EELSFQKGELNVQISERKTQLTlikqEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGL 1734
Cdd:COG4942 167 AELEAERAELEALLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1594-1814 |
6.71e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1594 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA---LRLGETEVTEKCNHIREVKSLLEE 1670
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALeqeLAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1671 LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQV 1750
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375230 1751 AVLEEKLELENLQQISQQQKGEIEwqkQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEK 1814
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
613-812 |
6.96e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 613 DLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaenm 692
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 693 RKELAELESALQEQHEVNASLQ---------------QTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrlTQLEQS 757
Cdd:COG3883 85 REELGERARALYRSGGSVSYLDvllgsesfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEA----KLAELE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 758 ALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 812
Cdd:COG3883 161 ALKAELEAAKAELEAQQ------AEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
696-947 |
7.58e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 696 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKeELEKVTRLTQLEQSALQAELEKERQALKnalg 775
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELA---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 776 kaqfseEKEQENSELHAKLKHLQDDnnlLKQQLKD-FQNHLNHVVDGLVRPEEVAARVDELRRklklgtgeMNIHSPSDv 854
Cdd:COG4942 87 ------ELEKEIAELRAELEAQKEE---LAELLRAlYRLGRQPPLALLLSPEDFLDAVRRLQY--------LKYLAPAR- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 855 lgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEfrqacERALEARMNFDKRQHEARIQQMENE 934
Cdd:COG4942 149 --REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|...
gi 2217375230 935 IHYLQENLKSMEE 947
Cdd:COG4942 222 AEELEALIARLEA 234
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
620-780 |
8.49e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 40.87 E-value: 8.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 620 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaeNMRKELAEL 699
Cdd:pfam00529 64 EAQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDL--------ARRRVLAPI 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 700 ESALQEQH-EVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 778
Cdd:pfam00529 136 GGISRESLvTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRAP 215
|
..
gi 2217375230 779 FS 780
Cdd:pfam00529 216 VD 217
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1856-2108 |
8.56e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1856 ELDQLNRDKlslhndISAMQQQLQEKREAVNSLQEELANVQDHLNlakqdllhttkhqdvllsEQTRLQKD-ISEWANRF 1934
Cdd:PHA02562 167 EMDKLNKDK------IRELNQQIQTLDMKIDHIQQQIKTYNKNIE------------------EQRKKNGEnIARKQNKY 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1935 EDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLET-SKV-----------TLKEQQHQLEKELT 2002
Cdd:PHA02562 223 DELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQfQKVikmyekggvcpTCTQQISEGPDRIT 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2003 DQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFsllrnqfl 2082
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF-------- 374
|
250 260
....*....|....*....|....*.
gi 2217375230 2083 TERKKAEKQVASLKEALKIQRSQLEK 2108
Cdd:PHA02562 375 VDNAEELAKLQDELDKIVKTKSELVK 400
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1804-1906 |
8.78e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.87 E-value: 8.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1804 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAMQQQLQEKR 1882
Cdd:TIGR04320 252 PPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAALANAE 331
|
90 100
....*....|....*....|....
gi 2217375230 1883 EAVNSLQEELANVQDHLNLAKQDL 1906
Cdd:TIGR04320 332 ARLAKAKEALANLNADLAKKQAAL 355
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1447-2125 |
8.84e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 8.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1447 LLKRRSELREADRLLAEAESELSCTK-EKTKNAVE----KFTDAKRSLLQTESDAE--ELERRAQETAVNLVKADQQL-- 1517
Cdd:pfam12128 155 LGRERVELRSLARQFALCDSESPLRHiDKIAKAMHskegKFRDVKSMIVAILEDDGvvPPKSRLNRQQVEHWIRDIQAia 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1518 ---------RSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIE--MAERNEDhhlqv 1586
Cdd:pfam12128 235 gimkirpefTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKekRDELNGE----- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1587 LKESEVLLQAKRAELEKLKSQVTSQQQEmavldrqlGHKKEELHLLQGSMVQAKADLQEALRLGETE----VTEKCNHIR 1662
Cdd:pfam12128 310 LSAADAAVAKDRSELEALEDQHGAFLDA--------DIETAAADQEQLPSWQSELENLEERLKALTGkhqdVTAKYNRRR 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1663 EVKS--LLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQvvlRQMSKHKTELKNILDMLQLENHELQG------- 1733
Cdd:pfam12128 382 SKIKeqNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELR---EQLEAGKLEFNEEEYRLKSRLGELKLrlnqata 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1734 ---LKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQ--------SCVE 1802
Cdd:pfam12128 459 tpeLLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELElqlfpqagTLLH 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1803 CLSKEKEDlqekcdiWEKKLAqtkRVLAAA-----------EENSKMEQSNLEKLELNVRKLQ-----QELDQLNRDKLS 1866
Cdd:pfam12128 539 FLRKEAPD-------WEQSIG---KVISPEllhrtdldpevWDGSVGGELNLYGVKLDLKRIDvpewaASEEELRERLDK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1867 LHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanrfedcQKEEETKQQ 1946
Cdd:pfam12128 609 AEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNK--------ALAERKDSA 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1947 QLQVLQNEIEENKLKLVQQEMM-----------FQRLQKERESEESK----------LETSKVTLKEQQHQLEKELTDQK 2005
Cdd:pfam12128 681 NERLNSLEAQLKQLDKKHQAWLeeqkeqkrearTEKQAYWQVVEGALdaqlallkaaIAARRSGAKAELKALETWYKRDL 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2006 SKLDQVLSKVLAAEERVRTL-----------QEEERWCESLEKTLSQTKRQLSEreqQLVEKSGELLALQKEADSMRADF 2074
Cdd:pfam12128 761 ASLGVDPDVIAKLKREIRTLerkieriavrrQEVLRYFDWYQETWLQRRPRLAT---QLSNIERAISELQQQLARLIADT 837
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 2217375230 2075 SLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKnLLTINEDSERDSSLLS 2125
Cdd:pfam12128 838 KLRRAKLEMERKASEKQQVRLSENLRGLRCEMSK-LATLKEDANSEQAQGS 887
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1932-2163 |
8.96e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 8.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1932 NRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEkeltdQKSKLDQV 2011
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELE-----EKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 2012 LSKVLAAEERVRTLQEEE-----RWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERK 2086
Cdd:pfam07888 109 SSEELSEEKDALLAQRAAheariRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELR 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217375230 2087 KAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCiqKEMATIELVAQDNHERARRLMKELNQM 2163
Cdd:pfam07888 189 SLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALL--EELRSLQERLNASERKVEGLGEELSSM 263
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
865-1142 |
9.98e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 865 QFSEILARSKWERDEAQVRERKLQ---EEMALQQEKLATGQ---EEFRQACERALEARMNF---DKRQHEARIQQMENEI 935
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDliiDEKRQQLERLRRERekaERYQALLKEKREYEGYEllkEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 936 HYLQEnlksmeEIQGLTDlQLQEADEEKERILAQLRELEKKkkLEDAKSQEQVfgldkelKKLKKAVATSDKLATAELTI 1015
Cdd:TIGR02169 247 ASLEE------ELEKLTE-EISELEKRLEEIEQLLEELNKK--IKDLGEEEQL-------RVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375230 1016 A--KDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQ---NLLRQKGEQFRLEMEKTGVGTgaN 1090
Cdd:TIGR02169 311 AekERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeelEDLRAELEEVDKEFAETRDEL--K 388
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375230 1091 SQVLEIEKLNETMERQRTEIARLQNV---LDLTGSDNKGGFENVLEEIAELRREV 1142
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEElqrLSEELADLNAAIAGIEAKINELEEEK 443
|
|
| |
