|
Name |
Accession |
Description |
Interval |
E-value |
| JAKMIP_CC3 |
pfam16034 |
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ... |
429-625 |
5.44e-93 |
|
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain] Cd Length: 199 Bit Score: 293.32 E-value: 5.44e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 429 ERDKLLRFRKQRKKMAKLPKP-VVVETFFGYDEEASLESDGSSVSYQTDRTDQTPCTPDDDLEEGMAKEETELRFRQLTM 507
Cdd:pfam16034 1 ERDKLIRARKQRRKEKKKKLRdMVVETFFGYDEEASVDSETSSLSYNTDRTDSTPATPDEDLDEGVAAEEAELRFRQLTR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 508 EYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQALYRRNQELVEKIKQM 587
Cdd:pfam16034 81 EYQALQRAYALLQEQSGGTLDAEREAKTREQLQAELRRAQSRIEDLESALAQKGQDSKWVEEKQALIRRNQELVEKIRIM 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 2217276844 588 ETEEARLRHEVQDARDQNELLEFRILELEERERKSPAI 625
Cdd:pfam16034 161 EQEEGRLKNEIQDARDQNELLEFRILELEERERRSPAI 198
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-830 |
1.28e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 1.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 27 DLRAKLTDIQIELQ--QEKSKVSKVEREKNQELRQVREHEQHKTAVLLTELKtklHEEKMKELQAVRETLLRQhEAELLR 104
Cdd:TIGR02168 217 ELKAELRELELALLvlRLEELREELEELQEELKEAEEELEELTAELQELEEK---LEELRLEVSELEEEIEEL-QKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 105 VIKIKDNENQRLQALLSALRDGGPEKVKTVLLSEAKEEAKKGFEVEKVKMQQEISELKGakrqveealtlVIQADKIKAA 184
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE-----------ELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 185 EIRSVyhlhQEEITRIKKECEREIRRLmeeikfkDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREADRhpgspr 264
Cdd:TIGR02168 362 ELEAE----LEELESRLEELEEQLETL-------RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE------ 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 265 relphaagagdasdhsgSPEQQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRL 344
Cdd:TIGR02168 425 -----------------ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 345 SRKNEDLSHALRRMENKLKFVTQENIEMRQRAGIIRRPSSLNDLDqSQDEREVDflklqIVEQQNLIDELSKTLETAGYV 424
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD-EGYEAAIE-----AALGGRLQAVVVENLNAAKKA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 425 KSVLERDKLLRfrkqrkkMAKLPKPVVVETFFGYDEEASLESDGSSVSYQTDRTDQTP------------CTPDDDLEEG 492
Cdd:TIGR02168 562 IAFLKQNELGR-------VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPklrkalsyllggVLVVDDLDNA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 493 MA-KEETELRFRQLTMEYQALQRAYALLQ---EQVGGTLDAEREVktrEQLQAEVQRAQARIEDLEKALAE---QGQDMK 565
Cdd:TIGR02168 635 LElAKKLRPGYRIVTLDGDLVRPGGVITGgsaKTNSSILERRREI---EELEEKIEELEEKIAELEKALAElrkELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 566 wiEEKQALYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERKSPAIsfhhtpfVDGKSPLQVYCEA 645
Cdd:TIGR02168 712 --EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER-------LEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 646 EgvtdivVAELMKKLDILGDNANLTNEEQVvviQARTVLTLAEKWLQQIEETEAALQRKMVDLESEKELFSKQKGYLDEE 725
Cdd:TIGR02168 783 E------IEELEAQIEQLKEELKALREALD---ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 726 LDYRKQALDQANKHILELEAMLYDALQQEAGAKVAELLSEEEREKLkvaveqwkrqvMSELRERDAQILRERmELLQLAQ 805
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL-----------SEELRELESKRSELR-RELEELR 921
|
810 820
....*....|....*....|....*
gi 2217276844 806 QRIKELEERIEAQKRQIKELEEKLS 830
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
45-868 |
3.10e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 3.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 45 KVSKVEREKNQELRQVREHEQHKTAVLltELKTKLHEEKMKELQAVRETLLRQHEAeLLRVIKIKDNENQRLQALLSALR 124
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAERYQ--ALLKEKREYEGYELLKEKEALERQKEA-IERQLASLEEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 125 DGGPEKVKtvLLSEAKEEAKKGFEVEKVKMQQEISELKG----AKRQVEEALTLVIQADKiKAAEIRSVYHLHQEEITRI 200
Cdd:TIGR02169 265 KRLEEIEQ--LLEELNKKIKDLGEEEQLRVKEKIGELEAeiasLERSIAEKERELEDAEE-RLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 201 KKECEREIRR---LMEEIKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREadrhpgsprrelphaagagDAS 277
Cdd:TIGR02169 342 EREIEEERKRrdkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR-------------------EIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 278 DHSGSPEQQLDEKdaRRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLSHALRR 357
Cdd:TIGR02169 403 ELKRELDRLQEEL--QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 358 MENKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQDEREVDFLKLQIVEQQNLIDELSKTLETAG-------YVKSVLER 430
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAgnrlnnvVVEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 431 DKLLRFRKQRK----------KMAKLPKPVVVETFFGYDEEAS--LESD---GSSVSYQTDRTDQTpctpdDDLEEGmak 495
Cdd:TIGR02169 561 KEAIELLKRRKagratflplnKMRDERRDLSILSEDGVIGFAVdlVEFDpkyEPAFKYVFGDTLVV-----EDIEAA--- 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 496 EETELRFRQLTMEYQALQRAYALlqeqVGGTLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEekQALYR 575
Cdd:TIGR02169 633 RRLMGKYRMVTLEGELFEKSGAM----TGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIE--NRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 576 RNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERKSPAISFHHTPFVDGKSPLQVYCEA--EGVTDIVV 653
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKleEALNDLEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 654 AELMKKLDILGDNANLTNEEQVvviqartvltlaeKWLQQIEETEAALQRKMVD---LESEKELFSKQKGYLDEELDYRK 730
Cdd:TIGR02169 787 RLSHSRIPEIQAELSKLEEEVS-------------RIEARLREIEQKLNRLTLEkeyLEKEIQELQEQRIDLKEQIKSIE 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 731 QALDQANKHILELEAMLydalqQEAGAKVAELlsEEEREKLKVAVEQWKRQvMSELRERdaqiLRERMELLQLAQQRIKE 810
Cdd:TIGR02169 854 KEIENLNGKKEELEEEL-----EELEAALRDL--ESRLGDLKKERDELEAQ-LRELERK----IEELEAQIEKKRKRLSE 921
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217276844 811 LEERIEAQKRQIKELEEKLSFSGHSPSWHPDVPHIEsdpfppvgpESRDKMGRRVSIL 868
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ---------AELQRVEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
495-838 |
4.61e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 4.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 495 KEETELRFRQLTMEYQALQRAYALLQEQVG-GTLDAEREVKTREQLQAEVQRAQARIEDLEKALAE-QGQDMKWIEEKQA 572
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEeLEAELEELEAELAELEAELEELRLELEELELELEEaQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 573 LYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERErkspaisfhhtpfvdgksplqvyceaegvtdiv 652
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL--------------------------------- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 653 vAELMKKLDilgdnanltnEEQVVVIQARTVLTLAEKWLQQIEETEAALQRKMVDLESEKELFSKQKGYLDEELDYRKQA 732
Cdd:COG1196 347 -EEAEEELE----------EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 733 LDQANKHILELEAmlydALQQEAGAKVAELLSEEEREKLKVAVEQwkrqvmsELRERDAQILRERMELLQLAQQRIKELE 812
Cdd:COG1196 416 LERLEEELEELEE----ALAELEEEEEEEEEALEEAAEEEAELEE-------EEEALLELLAELLEEAALLEAALAELLE 484
|
330 340
....*....|....*....|....*.
gi 2217276844 813 ERIEAQKRQIKELEEKLSFSGHSPSW 838
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEGV 510
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
26-619 |
3.32e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 3.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 26 EDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQHKTAVLLTELKTKLHEEKmKELQAVRETlLRQHEAELLRV 105
Cdd:COG1196 223 KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE-LELEEAQAE-EYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 106 IKIKDNENQRLQALLSALRDggpekvktvlLSEAKEEAKKGFEVEKVKMQQEISELKGAKRQVEEALTLVIQADKIKAAE 185
Cdd:COG1196 301 EQDIARLEERRRELEERLEE----------LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 186 IRSvyhlhQEEITRIKKECEREIRRLMEEIKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREADRhpgsprr 265
Cdd:COG1196 371 EAE-----LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE------- 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 266 elphaagagdasdhsgspEQQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLS 345
Cdd:COG1196 439 ------------------EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 346 RKNEDLSHALRRMENKlkfvtqeniemRQRAGIIRRPSSLNDLDQSqdEREVDFLKLQIVEQQNLIDELSKTLETAGYVK 425
Cdd:COG1196 501 ADYEGFLEGVKAALLL-----------AGLRGLAGAVAVLIGVEAA--YEAALEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 426 S-VLERDKLLRFRKQRKKMAKLPKPVVVETFFGYDEEASLESDGSSVSYQ-TDRTDQTPCTPDDDLEEGMAKEETELRFR 503
Cdd:COG1196 568 AaKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVlGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 504 QLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQALYRRNQELVEK 583
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590
....*....|....*....|....*....|....*.
gi 2217276844 584 IKQMETEEARLRHEVQDARDQNELLEFRILELEERE 619
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
488-830 |
1.44e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.54 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 488 DLEEGMAKEETELRFRQLTMEYQALQRAYALLQEQVGgtlDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDMKWI 567
Cdd:COG4717 113 ELREELEKLEKLLQLLPLYQELEALEAELAELPERLE---ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 568 EEKQA--LYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERKS------PAISFHHTPFVDGKSPL 639
Cdd:COG4717 190 TEEELqdLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKearlllLIAAALLALLGLGGSLL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 640 QVYCEAEGVTDIVVAELMKKLDILGDNANLTNEEQVVVIQARTVLTLAEKWLQQIeeteaaLQRKMVDLESEKELFSKQK 719
Cdd:COG4717 270 SLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEEL------LAALGLPPDLSPEELLELL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 720 GYLDEELDYRKQALDQANKHILELEAMLYDALQQEAGAKVAELLSE-----EEREKLKVAVEQWKRQVMSELRER----D 790
Cdd:COG4717 344 DRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAaleqaEEYQELKEELEELEEQLEELLGELeellE 423
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2217276844 791 AQILRERMELLQLAQQRIKELEERIEAQKRQIKELEEKLS 830
Cdd:COG4717 424 ALDEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
494-821 |
3.91e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 3.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 494 AKEETELRFRQLTMEYQALQRAYALLQEQVGG--------TLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDmk 565
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARleqdiarlEERRRELEERLEELEEELAELEEELEELEEELEELEEE-- 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 566 wIEEKQALYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERKSPAisfhhtpfvdgksplqvycEA 645
Cdd:COG1196 346 -LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE-------------------EL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 646 EGVTDIVVAELMKKLDILGDNANLTNEEQVVVIQARTVLTLAEKWLQQIEETEAALQRKMVDLESEKELfskqkgyLDEE 725
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL-------LEAA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 726 LDYRKQALDQANKHILELEAMLYDALQQEAGAKVAELLSEEEREKLKVAVEQWKrqvmsELRERDAQILRERMELLQLAQ 805
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV-----EAAYEAALEAALAAALQNIVV 553
|
330
....*....|....*.
gi 2217276844 806 QRIKELEERIEAQKRQ 821
Cdd:COG1196 554 EDDEVAAAAIEYLKAA 569
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
26-595 |
7.33e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 7.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 26 EDLRAKLTDIQIELQQEKSKVskveREKNQELRQVREHEQHKTAVLLTELKTKLHEEKMKELQAVRETLLRQHEAELLRV 105
Cdd:COG1196 256 EELEAELAELEAELEELRLEL----EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 106 IkikDNENQRLQALLSALRDGGPEKVKTVLLSEAKEEAKKGFEVEKVKMQQEISELKG----AKRQVEEALTLVIQADKI 181
Cdd:COG1196 332 L---EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEelleALRAAAELAAQLEELEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 182 KAAEIRSVYHLHQEEITRIKKECEREIRRLMEEIKFKDRAVFVLERELGVQAGHAQRLQLQKE-ALDEQLSQVREADRHP 260
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEaALLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 261 GSPRRELPHAAGAGDASDHSGSPEQQLDEKDARRFQLKI--------------AELSAIIRKLEDRNALLSEERNELLKR 326
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvligveaayeaaleAALAAALQNIVVEDDEVAAAAIEYLKA 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 327 VREAESQYKPLLDKNKRLSRKNEDLSHALRRMENKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQDEREVDFLKLQIVE 406
Cdd:COG1196 569 AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 407 QQNLIDELSKTLETAGYVKSVLERDKLLRFRKQRKKMAKLpkpvvvetffgYDEEASLESDGSSVSYQTDRTDQtpctpD 486
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL-----------AEEELELEEALLAEEEEERELAE-----A 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 487 DDLEEGMAKEETELRFRQLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLEK--ALAeqgqdm 564
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnLLA------ 786
|
570 580 590
....*....|....*....|....*....|.
gi 2217276844 565 kwIEEKQALYRRNQELVEKIKQMETEEARLR 595
Cdd:COG1196 787 --IEEYEELEERYDFLSEQREDLEEARETLE 815
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
158-829 |
1.15e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 158 ISELKGAKRQVEEALTLVIQADKIKAAEIRSVYHLHQEEITRIKK---ECEREIRRLMEEIKFKDRAVFVLERELGVQAG 234
Cdd:COG1196 202 LEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAeleELEAELEELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 235 HAQRLQLQKEALDEQLSQVREADRHpgspRRElphaagagdasdhsgspEQQLDEKDARRFQLKIAELSAIIRKLEDRNA 314
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIAR----LEE-----------------RRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 315 LLSEERNELLKRVREAESQykpLLDKNKRLSRKNEDLSHALRRMENKLKfvtQENIEMRQRAGIIRRPSSLNDLDQSQDE 394
Cdd:COG1196 341 ELEEELEEAEEELEEAEAE---LAEAEEALLEAEAELAEAEEELEELAE---ELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 395 REVDFLKLQIVEQQNLIDELSKTLETAgyvksvlerdkllrfrkqrkkmaklpkpvvvetffgydeeaslesdgssvsyq 474
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEE----------------------------------------------------- 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 475 tdrtdqtpctpDDDLEEGMAKEETELRFRQLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQR-AQARIEDL 553
Cdd:COG1196 442 -----------EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAdYEGFLEGV 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 554 EKALAEQGQDMKWieekQALYRRNQELVEKIKQMETEEARLRHE--VQDARDQNELLEFRILELEERERKSPAISFHHTP 631
Cdd:COG1196 511 KAALLLAGLRGLA----GAVAVLIGVEAAYEAALEAALAAALQNivVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 632 FVDGKSPLQVYCEAEGVTDIVVAELMKKLDILGDNAnltneeqVVVIQARTVLTLAEKWLQQIEETEAALQRKMVDLESE 711
Cdd:COG1196 587 ALAAALARGAIGAAVDLVASDLREADARYYVLGDTL-------LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 712 KELFSKQKGYLDEELDYRKQALDQANKHILELEAMLYDALQQEAGAKVAELLSEEEREKLKVAVEQwKRQVMSELRERDA 791
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA-LEEQLEAEREELL 738
|
650 660 670
....*....|....*....|....*....|....*...
gi 2217276844 792 QILRERMELLQLAQQRIKELEERIEAQKRQIKELEEKL 829
Cdd:COG1196 739 EELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
528-828 |
2.14e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 528 DAEREVKTR-EQLQAEVQRA------QARIEDLEKALAeqGQDMKWIEEKQALYRRN-QELVEKIKQMETEEARLRHEVQ 599
Cdd:COG1196 193 DILGELERQlEPLERQAEKAeryrelKEELKELEAELL--LLKLRELEAELEELEAElEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 600 DARDQNELLEFRILELEERERKSpaisfhhtpfvdgksplqvyceaegvtdivvaelmkkldilgdNANLTNEEQVVVIQ 679
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYEL-------------------------------------------LAELARLEQDIARL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 680 ARTVLTLAEKwLQQIEETEAALQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHILELEAMLYDALQQEAGAKV 759
Cdd:COG1196 308 EERRRELEER-LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217276844 760 AELLSEEEREKLKVAVEQWKRQVMSELRERDAQILRERMELLQLAQQRIKELEERIEAQKRQIKELEEK 828
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
36-621 |
4.28e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 36 QIELQQEKSKVSKVER-EKNQELRQVREHEQHKTAVLLTELKTKLHEEKMKELQAVRETllRQHEAELLRVIKIKDNENQ 114
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEElRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA--KKDAEEAKKAEEERNNEEI 1254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 115 RlqallsALRDGGPEKVKTVLLSEAKEEAKKGFEVEKVKMQQEISELKGA--KRQVEEAltlviqadKIKAAEIRSVYHL 192
Cdd:PTZ00121 1255 R------KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAeeKKKADEA--------KKKAEEAKKADEA 1320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 193 hQEEITRIKKECErEIRRLMEEIKFKDRAVfvlERELGVQAGHAQRLQLQKEALDEQLSQVREADRHPGSPRRELPHAAG 272
Cdd:PTZ00121 1321 -KKKAEEAKKKAD-AAKKKAEEAKKAAEAA---KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 273 AGDASDHSGSPEQQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLS 352
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 353 HALRRMENKLKFVTQENIEMRQRAGIIRRPSS----LNDLDQSQDEREVDflKLQIVEQQNLIDELSKTLEtagyVKSVL 428
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakkkADEAKKAEEAKKAD--EAKKAEEAKKADEAKKAEE----KKKAD 1549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 429 ERDKLLRFRKQRKKMAklpkpvvVETFFGYDEEASLESDGSSVSYQTDRTDQTPCTPDDDLEEGMAKEETElRFRQLTME 508
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKK-------AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK-KAEEAKIK 1621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 509 YQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLEKALAE---QGQDMKWIEEK-----QALYRRNQEL 580
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdkkKAEEAKKAEEDekkaaEALKKEAEEA 1701
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2217276844 581 --VEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERK 621
Cdd:PTZ00121 1702 kkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK 1744
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
38-603 |
7.86e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 7.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 38 ELQQEKSKVSKVEREKNQELRQVRE-----HEQHKTAVLLTELKTKLHEEKMKELQAVRETLLRQHEAELLRVIKIKDNE 112
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEearmaHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 113 NQRLQALLSALRDGgpeKVKTVLLSEAKEEAKKGFEVEKVKMQQEISELKGAKRQvEEALTLVIQADKIKAAEIRSvyhl 192
Cdd:PTZ00121 1314 AKKADEAKKKAEEA---KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKK---- 1385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 193 HQEEITR---IKKECErEIRRLMEEIKFKDRAVFVLER-----ELGVQAGHAQRLQLQKEALDEQLSQVREADRHPGSPR 264
Cdd:PTZ00121 1386 KAEEKKKadeAKKKAE-EDKKKADELKKAAAAKKKADEakkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 265 RelPHAAGAGDASDHSGSPEQQLDE--KDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNK 342
Cdd:PTZ00121 1465 K--AEEAKKADEAKKKAEEAKKADEakKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 343 RLSRKNEDLSHA--LRRMENKLKfVTQENIEMRQRAGIIRRPSslnDLDQSQDEREVDFLKLQIVEQQNLIDELSKTLEt 420
Cdd:PTZ00121 1543 EEKKKADELKKAeeLKKAEEKKK-AEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE- 1617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 421 agyvksvlERDKLLRFRKQ---RKKMAKLPKPVVVETffGYDEEASLESDGSSVSYQTDRTDQTPctpDDDLEEGMAKEE 497
Cdd:PTZ00121 1618 --------AKIKAEELKKAeeeKKKVEQLKKKEAEEK--KKAEELKKAEEENKIKAAEEAKKAEE---DKKKAEEAKKAE 1684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 498 TELRFRQLTMEYQALQRAYAllqEQVggTLDAEREVKTREQLQAEVQRAQARIEDLEKalaEQGQDMKWIEEkqalYRRN 577
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKA---EEL--KKKEAEEKKKAEELKKAEEENKIKAEEAKK---EAEEDKKKAEE----AKKD 1752
|
570 580
....*....|....*....|....*.
gi 2217276844 578 QELVEKIKQMETEEARLRHEVQDARD 603
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
82-828 |
2.44e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 82 EKMKELQAVRETLLRQHEAELLRVIKIKDnENQRLQALLSALRDGGPEKVKTVLLSEAKEEAKKGFEVEKVKMQQEISEL 161
Cdd:PTZ00121 1085 EDNRADEATEEAFGKAEEAKKTETGKAEE-ARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 162 KGAK--RQVEEALTlvIQADKiKAAEIRSVYHLHQEEITRIKKECER--EIRRLMEEIKFKD-RAVFVLERELGVQAGHA 236
Cdd:PTZ00121 1164 RKAEeaRKAEDAKK--AEAAR-KAEEVRKAEELRKAEDARKAEAARKaeEERKAEEARKAEDaKKAEAVKKAEEAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 237 QRLQLQKEALDEQLSQVREAdRHPGSPRRELPHAAGAGDASDHSGSPEQQLDEKDARRFQLKIAELSAIIRKLEDRNA-L 315
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEA-RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdE 1319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 316 LSEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLSHALRRMENKLKFVTQENIEMRQRAGIIRRpsslndldQSQDER 395
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK--------KAEEKK 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 396 EVDFLKLQIVEQQNLIDELSKTLETAGYVKSVLERDKLLRFRKQRKKMAKLPKPVvvetffgydEEASLESDGSSVSyqt 475
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA---------DEAKKKAEEAKKA--- 1459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 476 drtdqtpctpdddlEEGMAKEETELRFRQLTMEYQALQRAYALLQEqvggtldAEREVKTREQLQaEVQRAQARIEDLEK 555
Cdd:PTZ00121 1460 --------------EEAKKKAEEAKKADEAKKKAEEAKKADEAKKK-------AEEAKKKADEAK-KAAEAKKKADEAKK 1517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 556 AL-AEQGQDMKWIEEKqalyRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRilelEERERKSPAI-SFHHTPFV 633
Cdd:PTZ00121 1518 AEeAKKADEAKKAEEA----KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK----KAEEDKNMALrKAEEAKKA 1589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 634 DGKSPLQVYCEAEGVTDIVVAELMKKLDILGDNANLTNEEQVvviqartvltlaEKWLQQIEETEAALQRKMVDLESEKE 713
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE------------KKKVEQLKKKEAEEKKKAEELKKAEE 1657
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 714 LFSKQKGYLDEELDYRKQALDQANKhileleamlydalQQEAGAKVAELLSEEEREKLKVavEQWKRQVMSELRERDAQI 793
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKAEEAKK-------------AEEDEKKAAEALKKEAEEAKKA--EELKKKEAEEKKKAEELK 1722
|
730 740 750
....*....|....*....|....*....|....*
gi 2217276844 794 LRERMELLQLAQQRIKELEERIEAQKRQIKELEEK 828
Cdd:PTZ00121 1723 KAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
521-830 |
3.66e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 521 EQVGGTLDAEREvktREQLQAEVQRAQARIEDLEKALAEQGQDMKWI-------EEKQALYRRNQE-----LVEKIKQME 588
Cdd:TIGR02169 160 DEIAGVAEFDRK---KEKALEELEEVEENIERLDLIIDEKRQQLERLrrerekaERYQALLKEKREyegyeLLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 589 TEEARLRHEVQDARDQNELLEFRILELEERerkspaisfhhtpfvdgksplqvYCEAEgvtdIVVAELMKKLDILGDNAN 668
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKR-----------------------LEEIE----QLLEELNKKIKDLGEEEQ 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 669 LTNEEQVVVI-----QARTVLTLAEKWLQQIEETEA-------ALQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQA 736
Cdd:TIGR02169 290 LRVKEKIGELeaeiaSLERSIAEKERELEDAEERLAkleaeidKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 737 NKHILELEAmlydalqqEAGAKVAELLSEEER-EKLKVAVEQWKR---QVMSELRERDAQILRERMELlQLAQQRIKELE 812
Cdd:TIGR02169 370 RAELEEVDK--------EFAETRDELKDYREKlEKLKREINELKReldRLQEELQRLSEELADLNAAI-AGIEAKINELE 440
|
330
....*....|....*...
gi 2217276844 813 ERIEAQKRQIKELEEKLS 830
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLE 458
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
26-256 |
4.87e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 26 EDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQhktAVLLTELKTKLHEEKMKELQAVretlLRQHEAELLRV 105
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER---RIAALARRIRALEQELAALEAE----LAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 106 IKIKDNENQRLQALLSAL-RDGGPEKVKTVLLSEAKEEAkkgfevekVKMQQEISELKGAKRQVEEALTLVIQADKIKAA 184
Cdd:COG4942 96 RAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDA--------VRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217276844 185 EIRSvyhlHQEEITRIKKECEREIRRLMEEIKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREA 256
Cdd:COG4942 168 ELEA----ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
227-620 |
2.45e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 227 RELGVQAGHAQRLQLQKEALDEQLSQVREADRHPGSPRRELPHAAGAGDASDHSGSPEQQLDEKDAR--RFQLKIAELSA 304
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERleELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 305 IIRKLEDRNALLSEERNELLKRVREAESQYKPLLdknKRLSRKNEDLSHALRRMENKLKFVTQENIEMRQRAGIIRRPSS 384
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEEL---QDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 385 LNDLDQSQDEREVDFLKLQIVE--QQNLIDELSKTLETAGYVKSVLERDKLLRFRKQRKKMAKLPKPVVVETFFGYD--E 460
Cdd:COG4717 238 AAALEERLKEARLLLLIAAALLalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEelE 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 461 EASLESDGSSVSYQTDRTDQTPCTPDDDLEEgMAKEETELRFRQLTMEYQALQRAYALLQEQVGGTLDAE-----REVKT 535
Cdd:COG4717 318 EEELEELLAALGLPPDLSPEELLELLDRIEE-LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEElraalEQAEE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 536 REQLQAEVQRAQARIEDLEK---ALAEQGQDMKWIEEKQALYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRI 612
Cdd:COG4717 397 YQELKEELEELEEQLEELLGeleELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ 476
|
....*...
gi 2217276844 613 LELEERER 620
Cdd:COG4717 477 ELEELKAE 484
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
679-835 |
3.38e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 679 QARTVLTLAEKWLQQIEETEAALQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHILELEAMLYDALQQEAGAK 758
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 759 VAELLSEEEREKLKVAVEQWKRQVM---SELRERDAQILRERMELLQLA------QQRIKELEERIEAQKRQIKELEEKL 829
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKalrEALDELRAELTLLNEEAANLRerleslERRIAATERRLEDLEEQIEELSEDI 854
|
....*.
gi 2217276844 830 SFSGHS 835
Cdd:TIGR02168 855 ESLAAE 860
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
534-774 |
3.76e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 534 KTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEEK-QALYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRI 612
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQlAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 613 LELEERERKSPAISFHHtpfvDGKSPLQVYCEAEGVTDIV-VAELMKKLdilgdnaNLTNEEQVVVIQARtvltlaekwL 691
Cdd:COG4942 100 EAQKEELAELLRALYRL----GRQPPLALLLSPEDFLDAVrRLQYLKYL-------APARREQAEELRAD---------L 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 692 QQIEETEAALQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHILELEAMLYDALQQEA--GAKVAELLSEEERE 769
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEelEALIARLEAEAAAA 239
|
....*
gi 2217276844 770 KLKVA 774
Cdd:COG4942 240 AERTP 244
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
692-828 |
4.21e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 692 QQIEETEAALQR-----KMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHILELEAML-----------YDALQQEA 755
Cdd:COG3206 189 KELEEAEAALEEfrqknGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLgsgpdalpellQSPVIQQL 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 756 GAKVAELLSEEEREKLK--------VAVEQWKRQVMSELRERDAQILRERMELLQLAQQRIKELEERIEAQKRQIKELEE 827
Cdd:COG3206 269 RAQLAELEAELAELSARytpnhpdvIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPE 348
|
.
gi 2217276844 828 K 828
Cdd:COG3206 349 L 349
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
496-620 |
5.11e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 496 EETELRFRQLTMEYQALQRAYALLQEQvggtLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDMKWI----EEKQ 571
Cdd:COG4913 620 AELEEELAEAEERLEALEAELDALQER----REALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLaaleEQLE 695
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2217276844 572 ALYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERER 620
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
531-847 |
9.87e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 9.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 531 REVKTREQL-------QAEVQRAQARIEDLEKALAEQGQDMKWI---EEKQALYR-RNQELVEKIKQM-ETEEARLRHEV 598
Cdd:pfam17380 310 REVERRRKLeeaekarQAEMDRQAAIYAEQERMAMERERELERIrqeERKRELERiRQEEIAMEISRMrELERLQMERQQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 599 QDARDQNELLEFRILELEERERKspaisfhhtpfvdgKSPLQVYCEAEGVTdivvaelmkkldilgdnanlTNEEQVVVI 678
Cdd:pfam17380 390 KNERVRQELEAARKVKILEEERQ--------------RKIQQQKVEMEQIR--------------------AEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 679 QARTVLTLAEKWLQQIEETEAALQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHI-LELEAMLYDALQQEAGA 757
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILeKELEERKQAMIEEERKR 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 758 KVAELLSE-------EEREKLKVAVEQWKRQVMSELRERDAQILRERMELLQL-AQQRIKELEERIEAQKRQIKELEEKL 829
Cdd:pfam17380 516 KLLEKEMEerqkaiyEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLeAMEREREMMRQIVESEKARAEYEATT 595
|
330 340
....*....|....*....|...
gi 2217276844 830 SFSGHSPSWHPDV-----PHIES 847
Cdd:pfam17380 596 PITTIKPIYRPRIseyqpPDVES 618
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
205-595 |
1.16e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 205 EREIRRLMEEIKFKDRAVFVLERELgvqaghaQRLQLQKEALDEQLSQVREAdrhpgspRRELPHAAGAGDASDHSGSPE 284
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKAL-------AELRKELEELEEELEQLRKE-------LEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 285 QQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLSHALRRMENKLKF 364
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 365 VTQENIEMRQRAGIIRRpsSLNDLDQSQDEREVD--FLKLQIVEQQNLIDELSKTLETAGYVKSVLERDKLLRFRKQRKK 442
Cdd:TIGR02168 822 LRERLESLERRIAATER--RLEDLEEQIEELSEDieSLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 443 MAKLPKpvvVETFFGYDEEASLESDGSSVSYQtdrtdqtpctpdddleegMAKEETELRFRQLTmeyQALQRAYALLQEq 522
Cdd:TIGR02168 900 SEELRE---LESKRSELRRELEELREKLAQLE------------------LRLEGLEVRIDNLQ---ERLSEEYSLTLE- 954
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217276844 523 vggtlDAEREVKTREqlqAEVQRAQARIEDLEKALAEQGQ-DMKWIEEKQALYRRNQELVEKIKQMETEEARLR 595
Cdd:TIGR02168 955 -----EAEALENKIE---DDEEEARRRLKRLENKIKELGPvNLAAIEEYEELKERYDFLTAQKEDLTEAKETLE 1020
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
138-830 |
1.50e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 138 EAKEEAKKGFEVEKVKMQQEISELKGAKRQVEealtlviqadKIKAAEIRSVYHLHQEEITRIKKECEREIRRLMEEIKF 217
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQEL----------KLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 218 KDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREADRhpgsprrelphaagagdasdhsgspEQQLDEKDARRFQL 297
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK-------------------------EKKLQEEELKLLAK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 298 KIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLSHALRRMENKLKFVTQENIEMRQRAG 377
Cdd:pfam02463 294 EEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 378 IIRRPSSLNDLDQSQDEREVDFLKLQIVEQQNLIDELSKTLETAGYVKSVLERDKLLRFRKQRKKMAKLPKPVVVETFFG 457
Cdd:pfam02463 374 ELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 458 YDEEASLESDGSSVSYQTDRTDQTPCTPD----DDLEEGMAKEETELRFRQLTMEYQALQrayALLQEQVGGTLDAEREV 533
Cdd:pfam02463 454 EKQELKLLKDELELKKSEDLLKETQLVKLqeqlELLLSRQKLEERSQKESKARSGLKVLL---ALIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 534 KTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQALYRRNQELVEKIKQMETEEARLRHevqDARDQNELLEFRIL 613
Cdd:pfam02463 531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS---IAVLEIDPILNLAQ 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 614 ELEERERKSPAISFHHTPFVDGKSPLQVYcEAEGVTDIVVAELMKKLDILGDNANLTNEEQVVVIQARTVLTLAEKWLQQ 693
Cdd:pfam02463 608 LDKATLEADEDDKRAKVVEGILKDTELTK-LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 694 IEETEAALQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHILELEamlYDALQQEAGAKVAELLSEEEREKLKV 773
Cdd:pfam02463 687 SELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEE---LKLLKQKIDEEEEEEEKSRLKKEEKE 763
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217276844 774 AVEQWKRQVMSELRERDAQILRERMELLQLAQQRIKELEERIEAQKRQIKELEEKLS 830
Cdd:pfam02463 764 EEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE 820
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
26-600 |
1.58e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 26 EDLRAKLTDIQIELQQEKSKVSKVErEKNQELRQVREHeqhktavllTELKTKLHEEKMKELQAVRETLLRQHE-AELLR 104
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLE-EKIRELEERIEE---------LKKEIEELEEKVKELKELKEKAEEYIKlSEFYE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 105 VIKIKDNENQRLQALLSALRDGGPEKVKTVllsEAKEEAKKGFEVEKVKMQQEISELKGAKRQVEEALTLVIQADKIKaa 184
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKEL---EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLK-- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 185 eirsvyhlhqeeitriKKECEREIRRLMEEIKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREADRHPGSPR 264
Cdd:PRK03918 379 ----------------KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 265 RELphaagagdasdhsgspeqqlDEKDARRFqlkIAELSAIIRKLEDRNALLSEERNELLKRVREAESqykpLLDKNKRL 344
Cdd:PRK03918 443 REL--------------------TEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEK----VLKKESEL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 345 SrKNEDLSHALRRMENKLKFVTQENIEMRQR-AGIIRRPSSLNDLDQSQDEREVDFLKLQIVEQQNLIDELSKTLETAGY 423
Cdd:PRK03918 496 I-KLKELAEQLKELEEKLKKYNLEELEKKAEeYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAE 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 424 VKSVLERDKLLRFRKQRKKMAKLPKPvvvetffgYDEEASLESDGSSVSYQTDRTDQTPCTPDDDLEEgmaKEETELRFR 503
Cdd:PRK03918 575 LLKELEELGFESVEELEERLKELEPF--------YNEYLELKDAEKELEREEKELKKLEEELDKAFEE---LAETEKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 504 QLTMEYQALQRAYAllQEqvggtlDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQALYRRNQELVEK 583
Cdd:PRK03918 644 ELRKELEELEKKYS--EE------EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
570
....*....|....*..
gi 2217276844 584 IKQMETEEARLRHEVQD 600
Cdd:PRK03918 716 LEKALERVEELREKVKK 732
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
528-617 |
1.59e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 528 DAEREVKTRE--QLQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQALYRRNQELV----EKIKQMETEEARLRHEVQDA 601
Cdd:COG2433 405 ERELTEEEEEirRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREirkdREISRLDREIERLERELEEE 484
|
90
....*....|....*.
gi 2217276844 602 RDQNELLEFRILELEE 617
Cdd:COG2433 485 RERIEELKRKLERLKE 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
26-256 |
1.68e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 26 EDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQHKTAVLL----TELKTKLHEEKMKELQAVRETLLRQHEA- 100
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEErleeAEEELAEAEAEIEELEAQIEQLKEELKAl 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 101 --ELLRVIKIKDNENQRLQALLSALRDGGPEKVKTVLLSEAKEEAKKGFEVEKVKMQQEISELKGAKRQVEEALTlviQA 178
Cdd:TIGR02168 802 reALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE---AL 878
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217276844 179 DKIKAAeirsvyhlHQEEITRIKKECEreirRLMEEIKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREA 256
Cdd:TIGR02168 879 LNERAS--------LEEALALLRSELE----ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
38-219 |
1.71e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 38 ELQQEKSKVSKVEREKNQELRQVREHEQHKTA-----VLLTELKTKLHEEKMKELQAVRETLLRQHEAELLrviKIKDNE 112
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAeeenkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL---KKEAEE 1700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 113 NQRLQALlsalRDGGPEKVKTVllseakEEAKKGFEVEKVKMQQEISELKGAKRQVEEALtlVIQADKIKAAEIRSVYHL 192
Cdd:PTZ00121 1701 AKKAEEL----KKKEAEEKKKA------EELKKAEEENKIKAEEAKKEAEEDKKKAEEAK--KDEEEKKKIAHLKKEEEK 1768
|
170 180 190
....*....|....*....|....*....|....
gi 2217276844 193 HQEEITRIKKEC-------EREIRRLMEEIKFKD 219
Cdd:PTZ00121 1769 KAEEIRKEKEAVieeeldeEDEKRRMEVDKKIKD 1802
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
679-829 |
2.27e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 679 QARTVLTLAEKWLQQIEETEAALQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHILELEAMLyDALQQEAGAK 758
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL-EAQKEELAEL 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217276844 759 VAEL--LSEEEREKLKVAVEQWKRQV-MSELRERDAQILRERMELLQLAQQRIKELEERIEAQKRQIKELEEKL 829
Cdd:COG4942 110 LRALyrLGRQPPLALLLSPEDFLDAVrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
655-829 |
2.36e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 655 ELMKKLDILGDNANLTN-----EEQVVVIQARTVLTLAEKWLQQIEETEAALQRKMVDLESEKELFSKQK------GYLD 723
Cdd:PRK05771 54 KLSEALDKLRSYLPKLNplreeKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIerlepwGNFD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 724 EELDYrkqALDQANKHIL--ELEAMLYDALQQEAGAKVAELLSEEEREKLKVAVeqwkrqVMSELRERDAQILR----ER 797
Cdd:PRK05771 134 LDLSL---LLGFKYVSVFvgTVPEDKLEELKLESDVENVEYISTDKGYVYVVVV------VLKELSDEVEEELKklgfER 204
|
170 180 190
....*....|....*....|....*....|....
gi 2217276844 798 MELLQ--LAQQRIKELEERIEAQKRQIKELEEKL 829
Cdd:PRK05771 205 LELEEegTPSELIREIKEELEEIEKERESLLEEL 238
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
721-832 |
2.38e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 721 YLDEELDYRKQALDQANKHILELEAMLydALQQEA----GAKVAEL-----LSEEEREKLKVAVEQWKRQvMSELRERDA 791
Cdd:PRK09039 43 FLSREISGKDSALDRLNSQIAELADLL--SLERQGnqdlQDSVANLraslsAAEAERSRLQALLAELAGA-GAAAEGRAG 119
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2217276844 792 QI---LRERMELLQLAQQRIKELEERIEAQKRQIKELEEKLSFS 832
Cdd:PRK09039 120 ELaqeLDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
534-618 |
3.09e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 534 KTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQALYRRNQELVEKIKQMETeearLRHEVQDARDQNELLEFRIL 613
Cdd:COG1579 38 DELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEA----LQKEIESLKRRISDLEDEIL 113
|
....*
gi 2217276844 614 ELEER 618
Cdd:COG1579 114 ELMER 118
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
138-335 |
3.11e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 138 EAKEEAKKGFEVEKVKMQQEISELKGAKRQVEEALTLVIQADKIKAAEIRSVYHlhQEEITRIKKECER------EIRRL 211
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASA--EREIAELEAELERldassdDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 212 MEEIKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREADRHPGSPRRELPHAAGagdasdhsgspeqqldekD 291
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL------------------E 752
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2217276844 292 ARRFQLKIAELSAIIRK-LEDRNALLSEERNELLKRVREAESQYK 335
Cdd:COG4913 753 ERFAAALGDAVERELREnLEERIDALRARLNRAEEELERAMRAFN 797
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
670-842 |
3.44e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 670 TNEEQVVVIQARtvLTLAEKWLQQIEETEAALQRKMVDLESEKELFSKQKGYLDEELDY------------RKQALDQAN 737
Cdd:COG4913 607 DNRAKLAALEAE--LAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVasaereiaeleaELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 738 KHILELEAMLYDALQQEAGAKVAELLSEEEREKLKVAVEQWKRQVMSELRERDAQILRERMELLQLAQQRIKE------- 810
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAalgdave 764
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2217276844 811 ------LEERIEAQKRQIKELEEKL--SFSGHSPSWHPDV 842
Cdd:COG4913 765 relrenLEERIDALRARLNRAEEELerAMRAFNREWPAET 804
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
25-226 |
3.67e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 25 NEDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQHKTAVLLTELKTKLHEEKMKELQAVRETlLRQHEAELLR 104
Cdd:TIGR01612 691 NTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEINKDLNKILED-FKNKEKELSN 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 105 VIKIKDNENQRLQALLSALRDGGPEKVKTVLLSEAK-EEAKKGFE----------VEKVKMQQEISELKGAKRQVEEALT 173
Cdd:TIGR01612 770 KINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKdEDAKQNYDkskeyiktisIKEDEIFKIINEMKFMKDDFLNKVD 849
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2217276844 174 LVIQADKIKAAEIRSVYHLHQEEITRIKKECEREIRRLMEEiKFKDRAVFVLE 226
Cdd:TIGR01612 850 KFINFENNCKEKIDSEHEQFAELTNKIKAEISDDKLNDYEK-KFNDSKSLINE 901
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
236-595 |
5.16e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 236 AQRLQLQKEALDEQLSQVREADRHPGSPRRELPHAAGAGDASDHSGSPEQQLDEKDARRFQLKIAELSAIIRKLEDRNAL 315
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 316 LSEERNELLKRVREAESQYKPLLDKNKRLSRKneDLSHALRRMENKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQDER 395
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 396 EVDFLKLQIVEQQNLIDELSKTLEtagyvksvlerdkLLRFRKqRKKMAKLPKPVVvetffgydEEASLESDGSSVSYQT 475
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKEIE-------------NLNGKK-EELEEELEELEA--------ALRDLESRLGDLKKER 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 476 DRTDQTPCTPDDDLEEGMAK-EETELRFRQLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLE 554
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQiEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2217276844 555 KAlaeqgqDMKWIEEKQALYRRNQELVEKIKQMETEEARLR 595
Cdd:TIGR02169 972 PV------NMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
691-829 |
6.50e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 691 LQQIEETEAAL-----QRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKHILELEAmlydALQQEAGAKVAELlsE 765
Cdd:COG4913 271 LAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEA----QIRGNGGDRLEQL--E 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 766 EEREKLKVAVEQWKR--------------------QVMSELRERDAQILRERMELLQLAQQRIKELEERIEAQKRQIKEL 825
Cdd:COG4913 345 REIERLERELEERERrrarleallaalglplpasaEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
|
....
gi 2217276844 826 EEKL 829
Cdd:COG4913 425 EAEI 428
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
27-363 |
7.66e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 7.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 27 DLRAKLTDIQIELQQEK----SKVSKVERE---KNQELRQVR------EHEQHKTAVLLTELKTKLHEEKmKELQAVRET 93
Cdd:pfam15921 321 DLESTVSQLRSELREAKrmyeDKIEELEKQlvlANSELTEARterdqfSQESGNLDDQLQKLLADLHKRE-KELSLEKEQ 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 94 LLRQHEAE---------LLRVIKIKDNENQRLQALLSALRdggpekvktvllSEAKEEakkgfevekvkMQQEISELKGA 164
Cdd:pfam15921 400 NKRLWDRDtgnsitidhLRRELDDRNMEVQRLEALLKAMK------------SECQGQ-----------MERQMAAIQGK 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 165 KRQVEEALTLVIQADKIKAAEIRSVYHLHQEEITRikKECEREIRRLMEEIKFKDRAVFVLERE---------------- 228
Cdd:pfam15921 457 NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTL--ESSERTVSDLTASLQEKERAIEATNAEitklrsrvdlklqelq 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 229 -LGVQAGHAQRLQLQKEALDEQLS---QVREADRHPGSPRREL--PHAAGAGDASDHSGSPEQQLDEkdaRRFQL----- 297
Cdd:pfam15921 535 hLKNEGDHLRNVQTECEALKLQMAekdKVIEILRQQIENMTQLvgQHGRTAGAMQVEKAQLEKEIND---RRLELqefki 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 298 -------KIAELSAIIRKLEDRNALL--------------SEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLSHALR 356
Cdd:pfam15921 612 lkdkkdaKIRELEARVSDLELEKVKLvnagserlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEME 691
|
....*..
gi 2217276844 357 RMENKLK 363
Cdd:pfam15921 692 TTTNKLK 698
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
494-621 |
8.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 8.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217276844 494 AKEETELRFRQLTMEYQALQRAYAllqeQVGGtldaerevKTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQAL 573
Cdd:COG4913 310 ELERLEARLDALREELDELEAQIR----GNGG--------DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2217276844 574 YRRN-QELVEKIKQMETEEARLRHEVQDARDQnelLEFRILELEERERK 621
Cdd:COG4913 378 SAEEfAALRAEAAALLEALEEELEALEEALAE---AEAALRDLRRELRE 423
|
|
|