|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
214-278 |
1.38e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.36 E-value: 1.38e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217290444 214 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 278
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
4.89e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 4.89e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217290444 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
214-279 |
3.98e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.06 E-value: 3.98e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 214 IGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 279
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.06e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.06e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
573-1171 |
1.66e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 1.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 573 RAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHlvemEDTLNKLQEAEIKV-----------KELEVLQAKCN 641
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEEL----EELTAELQELEEKLeelrlevseleEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 642 EQTKVIDNFTSQLKATEEKLLDLDALRKASS----EGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAV 717
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEaqleELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 718 SvqrsmqetvnKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMn 797
Cdd:TIGR02168 372 S----------RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA- 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 798 dELRLKERDVEELQLKLTKANENASFLQKSIEdmtvKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKAR 877
Cdd:TIGR02168 441 -ELEELEEELEELQEELERLEEALEELREELE----EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 878 YERA------------TSETKTKHEEILQ-NLQKTLLDTEDKLKGA----REENSG-----LLQELEELRKQADKAKAAQ 935
Cdd:TIGR02168 516 SGLSgilgvlselisvDEGYEAAIEAALGgRLQAVVVENLNAAKKAiaflKQNELGrvtflPLDSIKGTEIQGNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 936 TAEDAMQIMEQMTKEKTETLASLE---------DTKQTNAKLQNELD------TL------------KENNLKNVEELNK 988
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKALSyllggvlvvDDLDNALELAKKLRpgyrivTLdgdlvrpggvitGGSAKTNSSILER 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 989 SKELLTVEnQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESK 1068
Cdd:TIGR02168 676 RREIEELE-EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1069 FIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAK----SLHSVVQTLESDKVKLELKVKNLELQLK 1144
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRealdELRAELTLLNEEAANLRERLESLERRIA 834
|
650 660
....*....|....*....|....*..
gi 2217290444 1145 ENKRQLSSSSGNTDTQADEDERAQESQ 1171
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
339-1013 |
2.09e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 2.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELR 418
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 419 RRLESNKPAgdvdmSLSLLQEISSLQEKLEVTRTdhqrEITSLKEHFG-AREETHQKEIKALYTATEKLSKENESLKSKL 497
Cdd:TIGR02168 379 EQLETLRSK-----VAQLELQIASLNNEIERLEA----RLERLEDRRErLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 498 EHANKENSDVIAlwksKLETAIASHQQAMEELkVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQD------- 570
Cdd:TIGR02168 450 EELQEELERLEE----ALEELREELEEAEQAL-DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgv 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 571 -----SERAAHAKEME-ALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEdtLNKLQEAEIKVKELEVLQAK--CNE 642
Cdd:TIGR02168 525 lseliSVDEGYEAAIEaALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLP--LDSIKGTEIQGNDREILKNIegFLG 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 643 QTKVIDNFTSQLKATEEKLLDL--------DALRKASSEG---------------------------------KSEMKKL 681
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALSYLLGGvlvvddldNALELAKKLRpgyrivtldgdlvrpggvitggsaktnssilerRREIEEL 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 682 RQQLEAAEKQIKHLEIEKNAessKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREK 761
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAE---LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 762 DEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEqSQQE 841
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA-ATER 838
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 842 AAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSEtKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQEL 921
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 922 EELRKQADKAKAAQT-------------AEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNK 988
Cdd:TIGR02168 918 EELREKLAQLELRLEglevridnlqerlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEE 997
|
730 740
....*....|....*....|....*
gi 2217290444 989 SKELLTVENQKMEEFRKEIETLKQA 1013
Cdd:TIGR02168 998 LKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
334-1084 |
2.66e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 2.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 334 GLHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQE 413
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 414 VAELRRRLE--SNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKeIKALYTATEKLSKENE 491
Cdd:TIGR02168 311 LANLERQLEelEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR-LEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 492 SLKSKLEHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDS 571
Cdd:TIGR02168 390 QLELQIASLNNE----IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 572 ERAAHAKEMEALRAKLMKV--IKEKENSLEAIRSKLD------KAEDQHLVEMEDTLNKLQEAeIKVKE------LEVLQ 637
Cdd:TIGR02168 466 LREELEEAEQALDAAERELaqLQARLDSLERLQENLEgfsegvKALLKNQSGLSGILGVLSEL-ISVDEgyeaaiEAALG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 638 AkcNEQTKVIDNFTSQLKAteeklldLDALRKASSeGKSEMKKLRQqLEAAEKQIKHLEIEKNAES-----SKKEKFAEA 712
Cdd:TIGR02168 545 G--RLQAVVVENLNAAKKA-------IAFLKQNEL-GRVTFLPLDS-IKGTEIQGNDREILKNIEGflgvaKDLVKFDPK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 713 SEEAVS-------VQRSMQETVNKLHQKEEQFNMLSSDLEKLR--------ENLADMEAKFREKdEREEqLIKAKEKLEN 777
Cdd:TIGR02168 614 LRKALSyllggvlVVDDLDNALELAKKLRPGYRIVTLDGDLVRpggvitggSAKTNSSILERRR-EIEE-LEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 778 DIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKL 857
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 858 SDLEKKMETSHNQcQELKARYERATSETKTKhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAkaAQTA 937
Cdd:TIGR02168 772 EAEEELAEAEAEI-EELEAQIEQLKEELKAL-REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL--EEQI 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 938 EDAMQIMEQMTKEktetlasLEDTKQTNAKLQNELDTLKennlknvEELNKSKELLTVENQKMEEFRKEIETLKQAAAQK 1017
Cdd:TIGR02168 848 EELSEDIESLAAE-------IEELEELIEELESELEALL-------NERASLEEALALLRSELEELSEELRELESKRSEL 913
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 1018 SQQLSALQEENVKLAEELGRSRDEVTSHQ-KLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSI 1084
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQeRLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
402-1176 |
2.77e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 2.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 402 ELEKDL------ALRVQEVAELRRRLEsnkpagDVDMSLSLLqEISSLQEKLEVTrtdhQREITSLKEhfgaREETHQKE 475
Cdd:TIGR02168 197 ELERQLkslerqAEKAERYKELKAELR------ELELALLVL-RLEELREELEEL----QEELKEAEE----ELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 476 IKALYTATEKLSKENESLKSKLEHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGlgteTAEFAELKTQIEKMR 555
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 556 LDY---QHEIENLQNQQDSERAAHaKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQhlveMEDTLNKLQEAEIKVKE 632
Cdd:TIGR02168 337 EELaelEEKLEELKEELESLEAEL-EELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 633 LEVlqakcnEQTKVIDNFTSQLKATEEKllDLDALRKASSEGKSEMKKLRQQLEAAEkqikhleiekNAESSKKEKFAEA 712
Cdd:TIGR02168 412 LED------RRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLE----------EALEELREELEEA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 713 SEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADmEAKFREKDEREEQLIKAKEKLENDIAEIMkmsGDNSSQ 792
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDEGYEAAIEAAL---GGRLQA 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 793 LTKMNDElrlkerdveelqlkltKANENASFLQKS------IEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMET 866
Cdd:TIGR02168 550 VVVENLN----------------AAKKAIAFLKQNelgrvtFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 867 SHNQCQELKARYERATSET-------KTKHEEILQNLQKTLLDTEDKL-KGAREENSGLL---QELEELRKQ-------- 927
Cdd:TIGR02168 614 LRKALSYLLGGVLVVDDLDnalelakKLRPGYRIVTLDGDLVRPGGVItGGSAKTNSSILerrREIEELEEKieeleeki 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 928 ADKAKAAQTAEDAMQIMEQMTKEK-----------TETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVE 996
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLrkeleelsrqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 997 NQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKReskfIKDADEE 1076
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLRERLESLERRIAATERR----LEDLEEQ 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1077 KASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSsgn 1156
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA---LALLRSELEELSEELRELESKRSELRRELEEL--- 920
|
810 820
....*....|....*....|
gi 2217290444 1157 TDTQADEDERAQESQIDFLN 1176
Cdd:TIGR02168 921 REKLAQLELRLEGLEVRIDN 940
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
448-1162 |
4.24e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 84.42 E-value: 4.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 448 EVTRTDHQREITSLKEHFGAREETHQKE---IKALYTATEKLSKENESLKS----------KLEHANKENSDVIALWKSK 514
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKKTEtgkAEEARKAEEAKKKAEDARKAeearkaedarKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 515 LETA-IASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRaklmKVIKE 593
Cdd:PTZ00121 1160 AEDArKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVK----KAEEA 1235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 594 KENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQA---KCNEQTKVIDNF--------TSQLKATEEKLL 662
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAdelKKAEEKKKADEAkkaeekkkADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 663 DLDALRKASSEGKSEMKKLRQQLEAAEK--QIKHLEIEKNAESSKK-EKFAEASEEAVSVQRSMQETVNKLHQKEEQFNM 739
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKaaEAAKAEAEAAADEAEAaEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 740 LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKE---------RDVEEL 810
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEeakkkaeeaKKADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 811 QLKLTKANEnASFLQKSIEDMTVKAEQSQQEAAKKH-EEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKH 889
Cdd:PTZ00121 1476 KKKAEEAKK-ADEAKKKAEEAKKKADEAKKAAEAKKkADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 890 EEILQNLQKTLLDTEDKlkgAREENSGLLQELEELRkQADKAKaaqtAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQ 969
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKK---AEEDKNMALRKAEEAK-KAEEAR----IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 970 NEldtlkENNLKNVEELNKSKElltVENQKMEEFRKEIETLKQAAAQKSQQlsalQEENVKLAEELGRSRDEVTSHQKLE 1049
Cdd:PTZ00121 1627 KA-----EEEKKKVEQLKKKEA---EEKKKAEELKKAEEENKIKAAEEAKK----AEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1050 EERSVLNNQLLEMKKRESKFIKDADEEKASlQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDK 1129
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
730 740 750
....*....|....*....|....*....|...
gi 2217290444 1130 VKLELKVKNLELQLKENKRQLSSSSGNTDTQAD 1162
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
660-1202 |
4.83e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 83.57 E-value: 4.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 660 KLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQ----------RSMQETVNK 729
Cdd:PRK03918 153 QILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISselpelreelEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 730 LHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNS--SQLTKMNDELRLKERDV 807
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEeyIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 808 EELqlkLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSdlEKKMETSHNQCQELKARYERATSETKT 887
Cdd:PRK03918 313 EKR---LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER--HELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 888 KHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQ----------TAEDAMQIMEQMTKEKTETLAS 957
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgrelTEEHRKELLEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 958 LEDTKQTNAKLQNELDTLkENNLKNVEELNKSKELL-----------TVENQKMEEFRKEIETLKQAAAQKSQQLSALQE 1026
Cdd:PRK03918 468 LKEIEEKERKLRKELREL-EKVLKKESELIKLKELAeqlkeleeklkKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1027 ENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLL---------------EMKKRESKFI--KDADEEKASLQKSISITSA 1089
Cdd:PRK03918 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEelgfesveeleerlkELEPFYNEYLelKDAEKELEREEKELKKLEE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1090 LLTEKDAELEKLRNEVTVLRGENASAKSLHSV--VQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTD---TQADED 1164
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEeeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEklkEELEER 706
|
570 580 590
....*....|....*....|....*....|....*...
gi 2217290444 1165 ERAQEsQIDFLNSVIVDLQRKNQDLKMKVEMMSEAALN 1202
Cdd:PRK03918 707 EKAKK-ELEKLEKALERVEELREKVKKYKALLKERALS 743
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
653-1016 |
2.63e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 2.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 653 QLKATEEKLLDLDALRkasSEGKSEMKKLRQQleaAEKQIKHLEIEKNAESSKKE----KFAEASEEAVSVQRSMQETVN 728
Cdd:COG1196 180 KLEATEENLERLEDIL---GELERQLEPLERQ---AEKAERYRELKEELKELEAEllllKLRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 729 KLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVE 808
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 809 ELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKAryeratsetktk 888
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ------------ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 889 heeiLQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQimEQMTKEKTETLASLEDTKQTNAKL 968
Cdd:COG1196 402 ----LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALL 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2217290444 969 QNELDTLKEnnlkNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQ 1016
Cdd:COG1196 476 EAALAELLE----ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
347-1145 |
6.31e-15 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 80.40 E-value: 6.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 347 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatVSEKSRIMELEKDLALRVQEVAELRRRLESNKP 426
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEY----------YQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 427 AGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSd 506
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 507 vialwksKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQdsERAAHAKEMEALRAK 586
Cdd:pfam02463 325 -------KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK--LESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 587 LMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEikvKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDA 666
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE---ESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 667 LRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKF-------------------------AEASEEAVSVQR 721
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALikdgvggriisahgrlgdlgvavenYKVAISTAVIVE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 722 SMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR 801
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 802 LKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERA 881
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 882 TSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDT 961
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 962 KQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDE 1041
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1042 VTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALL-TEKDAELEKLRNEVTVLRGENASAKSLhs 1120
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERiKEEAEILLKYEEEPEELLLEEADEKEK-- 950
|
810 820
....*....|....*....|....*
gi 2217290444 1121 vvqtLESDKVKLELKVKNLELQLKE 1145
Cdd:pfam02463 951 ----EENNKEEEEERNKRLLLAKEE 971
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
470-1150 |
9.85e-15 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 79.38 E-value: 9.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 470 ETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSF 533
Cdd:pfam05483 109 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 534 SKGLGTETAEFAELKTQIEKMRLDYQHEIenlqnQQDSERAAHAKEmealraKLMKVIKEKENSLEAIRSKLDKAEDQhl 613
Cdd:pfam05483 189 NNNIEKMILAFEELRVQAENARLEMHFKL-----KEDHEKIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK-- 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 614 veMEDTLNKLQEAEIKVKELEvlqakcnEQTKVIDNFTSQLKATEEKLL-DLDALRKASSEGKSEMKKLRQQLEAAEKQI 692
Cdd:pfam05483 256 --MKDLTFLLEESRDKANQLE-------EKTKLQDENLKELIEKKDHLTkELEDIKMSLQRSMSTQKALEEDLQIATKTI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 693 KHLEIEKNAESSKKEK--------FAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDER 764
Cdd:pfam05483 327 CQLTEEKEAQMEELNKakaahsfvVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 765 EEQLIKA---KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQE 841
Cdd:pfam05483 407 LEELKKIlaeDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLK 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 842 AAKKHEEEKKELERKlsdlEKKMETSHNQCQELKARYERATSETKTKHEEI--LQNLQKTLLDTEDKLKGAREEnsgLLQ 919
Cdd:pfam05483 487 NIELTAHCDKLLLEN----KELTQEASDMTLELKKHQEDIINCKKQEERMLkqIENLEEKEMNLRDELESVREE---FIQ 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 920 ELEELRKQADKAKaaqtaEDAMQIMEQMTKEKTetlasledtkqtnaklQNELDTLKENNLKNVEElNKSKELltvenqk 999
Cdd:pfam05483 560 KGDEVKCKLDKSE-----ENARSIEYEVLKKEK----------------QMKILENKCNNLKKQIE-NKNKNI------- 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1000 mEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshQKLEEERSVLNNQLLEMKKRESKFIKDADEEKAS 1079
Cdd:pfam05483 611 -EELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK------QKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAI 683
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217290444 1080 LQKSISITSAL-------LTEKDAELEKLRNEVTVLRGENASAKSLH-SVVQTLESDKVKLELKVKNLELQLKENKRQL 1150
Cdd:pfam05483 684 ADEAVKLQKEIdkrcqhkIAEMVALMEKHKHQYDKIIEERDSELGLYkNKEQEQSSAKAALEIELSNIKAELLSLKKQL 762
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
540-1140 |
1.17e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 540 ETAE-FAELKTQIEKMRLDYQ-HEIENLQNQQDSERAAhAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEME 617
Cdd:COG1196 210 EKAErYRELKEELKELEAELLlLKLRELEAELEELEAE-LEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 618 DTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEI 697
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 698 EKNAE-SSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLE 776
Cdd:COG1196 369 EAEAElAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 777 NDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERK 856
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 857 LSDLEKKMETshnqcqelkARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREEnsgLLQELEELRKQADKAKAAQT 936
Cdd:COG1196 529 LIGVEAAYEA---------ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF---LPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 937 AEDAMQIMEqmtkektetlaslEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVEnqkmeefRKEIETLKQAAAQ 1016
Cdd:COG1196 597 IGAAVDLVA-------------SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA-------GRLREVTLEGEGG 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1017 KSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDA 1096
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2217290444 1097 ELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLE 1140
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
591-1196 |
3.88e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 3.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 591 IKEKENSLEAIRSKLDKAEDqHLVEMEDTLNKLQ-EAEIKVK------ELEVLQAkcneqtkvidnftsqlkatEEKLLD 663
Cdd:COG1196 174 KEEAERKLEATEENLERLED-ILGELERQLEPLErQAEKAERyrelkeELKELEA-------------------ELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 664 LDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAEsskKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSD 743
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEEL---RLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 744 LEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASF 823
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 824 LQKSIEDmTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARyERATSETKTKHEEILQNLQKTLLDT 903
Cdd:COG1196 391 ALRAAAE-LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 904 EDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTEtLASLEDTKQTNAKLQNELDT--------- 974
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG-LRGLAGAVAVLIGVEAAYEAaleaalaaa 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 975 LKENNLKNVEELNKSKELLTVENQKMEEFRkEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEV-----------T 1043
Cdd:COG1196 548 LQNIVVEDDEVAAAAIEYLKAAKAGRATFL-PLDKIRARAALAAALARGAIGAAVDLVASDLREADARyyvlgdtllgrT 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1044 SHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQ 1123
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217290444 1124 TLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMM 1196
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
212-272 |
4.02e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 73.95 E-value: 4.02e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217290444 212 LKIGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 272
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
800-1145 |
4.09e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 4.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 800 LRLKERDvEELQLKLTKANENASFLQ----------KSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHN 869
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEdilnelerqlKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 870 QCQELKARYERATSETKTKHEEILQnLQKTLLDTEDKLKGAREENSGLLQELEELRKQadKAKAAQTAEDAMQIMEQMTK 949
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEE-LRLEVSELEEEIEELQKELYALANEISRLEQQ--KQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 950 EKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENV 1029
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1030 KLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKRESKF-IKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVL 1108
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAeLEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350
....*....|....*....|....*....|....*..
gi 2217290444 1109 RGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1145
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
467-1197 |
5.72e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 5.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 467 AREETHQKE--IKALYTATEKLSKENESLKSKLEHAnkENSDVIALWKSKLE-TAIASHQQAMEELKVSFSKGLGTETAE 543
Cdd:TIGR02169 175 ALEELEEVEenIERLDLIIDEKRQQLERLRREREKA--ERYQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 544 FAELKTQIEKMRLDYqHEIENLQNQQdseraahAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKL 623
Cdd:TIGR02169 253 LEKLTEEISELEKRL-EEIEQLLEEL-------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 624 QEAEIkvkELEVLQAKcneqtkvIDNFTSQLkatEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKqikhleieKNAES 703
Cdd:TIGR02169 325 AKLEA---EIDKLLAE-------IEELEREI---EEERKRRDKLTEEYAELKEELEDLRAELEEVDK--------EFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 704 skKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIM 783
Cdd:TIGR02169 384 --RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 784 KMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKS------------------------------------ 827
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraveevlkasiqgvhgtvaqlgsvgeryatai 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 828 ------------IEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQ--------ELKARYERATS---- 883
Cdd:TIGR02169 542 evaagnrlnnvvVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVigfavdlvEFDPKYEPAFKyvfg 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 884 -----ETKTKHEEILQNLQKTLLDTEDKLK------GAREENSGLL---QELEELRKQADKAKAAQTAEDAMQI-MEQMT 948
Cdd:TIGR02169 622 dtlvvEDIEAARRLMGKYRMVTLEGELFEKsgamtgGSRAPRGGILfsrSEPAELQRLRERLEGLKRELSSLQSeLRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 949 KEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEEN 1028
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1029 VKLAEELGRSR-DEVTSH-QKLEEERSVLNNQLLEMKKRESK-----------------FIKDADEEKASLQKSISITSA 1089
Cdd:TIGR02169 782 NDLEARLSHSRiPEIQAElSKLEEEVSRIEARLREIEQKLNRltlekeylekeiqelqeQRIDLKEQIKSIEKEIENLNG 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1090 LLTEKDAELEKLRNEVTVLRGENASAKS----LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQadEDE 1165
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKerdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI--EDP 939
|
810 820 830
....*....|....*....|....*....|..
gi 2217290444 1166 RAQESQIDFLNSVIVDLQRKNQdlKMKVEMMS 1197
Cdd:TIGR02169 940 KGEDEEIPEEELSLEDVQAELQ--RVEEEIRA 969
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-1100 |
5.91e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.52 E-value: 5.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 435 SLLQEISSLQEKLEvtrtDHQREITSLKEHFGAREEThqkeIKALYTATEKLSKENESLKSKL----EHANKENSDVIAL 510
Cdd:TIGR04523 37 QLEKKLKTIKNELK----NKEKELKNLDKNLNKDEEK----INNSNNKIKILEQQIKDLNDKLkknkDKINKLNSDLSKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 511 ---------WKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRlDYQHEIENLQNQQDS-ERAAHAKEm 580
Cdd:TIGR04523 109 nseikndkeQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYN-DLKKQKEELENELNLlEKEKLNIQ- 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 581 ealraKLMKVIKEKENSLEAIRSKLDKAEDQHlVEMEDTLNKLQEAEIKVKE-LEVLQAKCNEQTKVIDNFTSQLKATEE 659
Cdd:TIGR04523 187 -----KNIDKIKNKLLKLELLLSNLKKKIQKN-KSLESQISELKKQNNQLKDnIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 660 KLldlDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEK--FAEASEEAVSVQRSMQETVNKLHQKEEQF 737
Cdd:TIGR04523 261 EQ---NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdwNKELKSELKNQEKKLEEIQNQISQNNKII 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 738 NMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKA 817
Cdd:TIGR04523 338 SQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKL 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 818 NENASFLQKSIEDMTVKAEQsQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSEtktkheeiLQNLQ 897
Cdd:TIGR04523 418 QQEKELLEKEIERLKETIIK-NNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN--------LEQKQ 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 898 KTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNA------KLQN 970
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKlESEKKEKESKISDLEDELNKDDFELKKENlekeidEKNK 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 971 ELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELgrsRDEVTSHQKLEE 1050
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII---KNIKSKKNKLKQ 645
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1051 ERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEK 1100
Cdd:TIGR04523 646 EVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKK 695
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
351-1133 |
9.42e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.18 E-value: 9.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 351 VEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQ-EVAELRRRLESNKPAgd 429
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGELEAEIASLERS-- 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 430 VDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEHANKENsdviA 509
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELER----EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----A 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 510 LWKSKLetaiASHQQAMEELKVSFSKgLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQdserAAHAKEMEALRAKlmk 589
Cdd:TIGR02169 382 ETRDEL----KDYREKLEKLKREINE-LKRELDRLQEELQRLSEELADLNAAIAGIEAKI----NELEEEKEDKALE--- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 590 vIKEKENSLEAIRSKLDKAEDQHlvemEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLldldalrk 669
Cdd:TIGR02169 450 -IKKQEWKLEQLAADLSKYEQEL----YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVL-------- 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 670 aSSEGKSEMKKLRQQLEAAEKQIKHLEIEK----NAESSKKEKFAEASEEAVSVQRSMQET---VNKLHQKEeqfnmlsS 742
Cdd:TIGR02169 517 -KASIQGVHGTVAQLGSVGERYATAIEVAAgnrlNNVVVEDDAVAKEAIELLKRRKAGRATflpLNKMRDER-------R 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 743 DLEKLRE--------NLADMEAKFR--------------EKDEREEQLIKAKE-KLENDIAEIM-KMSGDNSSQLTKMND 798
Cdd:TIGR02169 589 DLSILSEdgvigfavDLVEFDPKYEpafkyvfgdtlvveDIEAARRLMGKYRMvTLEGELFEKSgAMTGGSRAPRGGILF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 799 ELRLKERdVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeekkelerKLSDLEKKMETSHNQCQELKARY 878
Cdd:TIGR02169 669 SRSEPAE-LQRLRERLEGLKRELSSLQSELRRIENRLDELSQ---------------ELSDASRKIGEIEKEIEQLEQEE 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 879 ERAtsetktkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMtKEKTETLASL 958
Cdd:TIGR02169 733 EKL--------KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI-PEIQAELSKL 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 959 EDTKQTNAKLQNELDtlkennlKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEE-NVKLAEELGR 1037
Cdd:TIGR02169 804 EEEVSRIEARLREIE-------QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEElEEELEELEAA 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1038 SRDEVTSHQKLEEERSVLNNQLLEMKKRESKfIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS 1117
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEE-LEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED 955
|
810
....*....|....*.
gi 2217290444 1118 LHSVVQTLESDKVKLE 1133
Cdd:TIGR02169 956 VQAELQRVEEEIRALE 971
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
548-1204 |
1.63e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.46 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 548 KTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKV------IKEKENSLEAIRSKLDKAEDQHLVEMEDTLN 621
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLqtklqeMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 622 KLQEAE-IKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDAL--RKASSEGKSEMKKLRQQLEAAEKQIKHLEIE 698
Cdd:pfam15921 153 ELEAAKcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEAsgKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 699 KnaeSSKKEKFAEASEEAVSVQRSMQETVNKL-HQKEEQFNMLSSDLEKLRENLADMEAKFREK-DEREEQLIKAKEKLE 776
Cdd:pfam15921 233 I---SYLKGRIFPVEDQLEALKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSARSQaNSIQSQLEIIQEQAR 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 777 NDIAEIMKMSGDNSSQLTKMNDELR----LKERDVEELQLKLTKAN--------ENASF----------LQKSIEDMTVK 834
Cdd:pfam15921 310 NQNSMYMRQLSDLESTVSQLRSELReakrMYEDKIEELEKQLVLANselteartERDQFsqesgnlddqLQKLLADLHKR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 835 AEQS--QQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQktllDTEDKLKGARE 912
Cdd:pfam15921 390 EKELslEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQ----GKNESLEKVSS 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 913 ENSGLLQELEELRKQADKAKAAQ-TAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQN-------ELDTLK--ENNLKN 982
Cdd:pfam15921 466 LTAQLESTKEMLRKVVEELTAKKmTLESSERTVSDLTASLQEKERAIEATNAEITKLRSrvdlklqELQHLKneGDHLRN 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 983 VE-ELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERsvlNNQLLE 1061
Cdd:pfam15921 546 VQtECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK---DAKIRE 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1062 MKKReskfIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGE-NASAKSLHSVVQTLESDKVKLELKVKNLE 1140
Cdd:pfam15921 623 LEAR----VSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNElNSLSEDYEVLKRNFRNKSEEMETTTNKLK 698
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217290444 1141 LQLKENKRQLSSSSGNTDTQADEDERAQESQIDFLNSVIVdlQRKNQD-LKMKVEMMSEAALNGN 1204
Cdd:pfam15921 699 MQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA--KRGQIDaLQSKIQFLEEAMTNAN 761
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
548-1140 |
1.63e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.38 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 548 KTQIEKMRLDYQHEIENLQNQ--QDSERAAHAK--EMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQhLVEMEDTLNKL 623
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQieEKEEKDLHERlnGLESELAELDEEIERYEEQREQARETRDEADEV-LEEHEERREEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 624 QEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLD-LDALRKASSEGKSEMKKLRQQLEAAEKQIKHL------- 695
Cdd:PRK02224 254 ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEeRDDLLAEAGLDDADAEAVEARREELEDRDEELrdrleec 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 696 ---------EIEKNAESSKK--EKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDER 764
Cdd:PRK02224 334 rvaaqahneEAESLREDADDleERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 765 EEQLIKAKEKLENDIAEimkmsgdnssqltkMNDELRLKERDVEELQLKLTKANenasflqksiedmtvKAEQSQQEAAK 844
Cdd:PRK02224 414 LEELREERDELREREAE--------------LEATLRTARERVEEAEALLEAGK---------------CPECGQPVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 845 KHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEEL 924
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--EDRIERLEERREDLEELIAERRETIEEKRERAEEL 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 925 RKQADKAKA-AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEnnlknveelnkSKELLTVENQKMEEF 1003
Cdd:PRK02224 543 RERAAELEAeAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRT-----------LLAAIADAEDEIERL 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1004 RKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshqkLEEERSVLNNQLLEMKKRESKfIKDADEEKASLQKS 1083
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKRELEAEFDEAR--------IEEAREDKERAEEYLEQVEEK-LDELREERDDLQAE 682
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1084 I-SITSALltekdAELEKLRNEVTVLRGENASAKSLHSVVQTLES--DKVKLELKVKNLE 1140
Cdd:PRK02224 683 IgAVENEL-----EELEELRERREALENRVEALEALYDEAEELESmyGDLRAELRQRNVE 737
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
592-1016 |
2.75e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 592 KEKENSLEAIRSKLDKAEDQhLVEMEDTLNKLQeaeikvkelevLQAKCNEQTKvidnftsQLKATEEKL-LDLDALRka 670
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDI-LNELERQLKSLE-----------RQAEKAERYK-------ELKAELRELeLALLVLR-- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 671 ssegkseMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSvqrsmqetvnKLHQKEEQFNMLSSDLEKLREN 750
Cdd:TIGR02168 234 -------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL----------EVSELEEEIEELQKELYALANE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 751 LADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIED 830
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 831 MTVKAEQsqqeaakkheeekkeLERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKT----LLDTEDK 906
Cdd:TIGR02168 377 LEEQLET---------------LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeeaeLKELQAE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 907 LKGAREENSGLLQELEELRKQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE 985
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREElEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGI 521
|
410 420 430
....*....|....*....|....*....|.
gi 2217290444 986 LNKSKELLTVEnqkmEEFRKEIETLKQAAAQ 1016
Cdd:TIGR02168 522 LGVLSELISVD----EGYEAAIEAALGGRLQ 548
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
397-1013 |
5.56e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 5.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 397 KSRIMELEKDLALRVQEVAELRRRLEsnKPAGDVDMSLSLLQEISSLQEKLEvtrtDHQREITSLKEHFGAREEthqkEI 476
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELP--ELREELEKLEKEVKELEELKEEIE----ELEKELESLEGSKRKLEE----KI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 477 KALYTATEKLSKENESLKSKLEHANKensdvialwkskletaiashqqaMEELKVSFSKgLGTETAEFAELKTQIEKMRL 556
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELKE-----------------------LKEKAEEYIK-LSEFYEEYLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 557 DYQHEIENLQnqqdseraahakemealraKLMKVIKEKENSLEAIRSKLDKAEDQhLVEMEDTLNKLQEAEIKVKELEVL 636
Cdd:PRK03918 318 RLEEEINGIE-------------------ERIKELEEKEERLEELKKKLKELEKR-LEELEERHELYEEAKAKKEELERL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 637 QAK--CNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKN--AESSKKEKFAEA 712
Cdd:PRK03918 378 KKRltGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRelTEEHRKELLEEY 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 713 SEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKlrenladmEAKFREKDEREEQLIKAKEKLENDIAEIMKmsgDNSSQ 792
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKK--------ESELIKLKELAEQLKELEEKLKKYNLEELE---KKAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 793 LTKMNDELRLKERDVEELQLKLTKANEnasfLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMetshnqcQ 872
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERL-------K 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 873 ELKARYERATSETKTKHEeiLQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKT 952
Cdd:PRK03918 596 ELEPFYNEYLELKDAEKE--LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217290444 953 ETlasledtkqtnAKLQNELDTLKennlKNVEELNKSKELLTVENQKMEEFRKEIETLKQA 1013
Cdd:PRK03918 674 EL-----------AGLRAELEELE----KRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
579-1194 |
5.73e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 70.59 E-value: 5.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 579 EMEALRAKLMKViKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQ-EAEIKVKELEV---LQAKCNEQTKVIDNFTSQL 654
Cdd:pfam01576 6 EMQAKEEELQKV-KERQQKAESELKELEKKHQQLCEEKNALQEQLQaETELCAEAEEMrarLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 655 KATEEKLLDLDALRKassEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAE-----------ASEEAVSVQRSM 723
Cdd:pfam01576 85 EEEEERSQQLQNEKK---KMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEdillledqnskLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 724 QETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLK 803
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 804 ERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERK----------LSDLEKKMETSHNQcQE 873
Cdd:pfam01576 242 EEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdlgeelealKTELEDTLDTTAAQ-QE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 874 LKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDA-----MQIMEQMT 948
Cdd:pfam01576 321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAelqaeLRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 949 KEK-----------TETLASLEDTKQTNA-------KLQNELDTLKeNNLKNVEELN--KSKELLTVENQkMEEFRKEIE 1008
Cdd:pfam01576 401 QDSehkrkklegqlQELQARLSESERQRAelaeklsKLQSELESVS-SLLNEAEGKNikLSKDVSSLESQ-LQDTQELLQ 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1009 TLKQAAAQKSQQLSALQEENVKLAEELgrsRDEVTSHQKLEEERSVLNNQLLEMKKR---ESKFIKDADEEKASLQKSIS 1085
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQEQL---EEEEEAKRNVERQLSTLQAQLSDMKKKleeDAGTLEALEEGKKRLQRELE 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1086 ITSALLTEKDAELEKLRNEVTVLRGE----NASAKSLHSVVQTLESDKVKLELKV---KNLELQLKENKRQLSSSSGNTD 1158
Cdd:pfam01576 556 ALTQQLEEKAAAYDKLEKTKNRLQQElddlLVDLDHQRQLVSNLEKKQKKFDQMLaeeKAISARYAEERDRAEAEAREKE 635
|
650 660 670
....*....|....*....|....*....|....*.
gi 2217290444 1159 TQADEDERAQESQIDFLNsvivDLQRKNQDLKMKVE 1194
Cdd:pfam01576 636 TRALSLARALEEALEAKE----ELERTNKQLRAEME 667
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
578-1140 |
5.96e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 5.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 578 KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQhLVEMEDTLNKLQEAEIKVKELE----VLQAKCNEQTKVIDNFTSQ 653
Cdd:PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKE-VKELEELKEEIEELEKELESLEgskrKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 654 LKATEEKLLDLDALR-----------------KASSEGKSEMKKLRQQLEAAEKQIKHLEieknaesSKKEKFAEASEEA 716
Cdd:PRK03918 275 IEELEEKVKELKELKekaeeyiklsefyeeylDELREIEKRLSRLEEEINGIEERIKELE-------EKEERLEELKKKL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 717 VSVQRSmqetVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDERE-EQLIKAKEKLENDIAEIMKMSGdnssqltk 795
Cdd:PRK03918 348 KELEKR----LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKElEELEKAKEEIEEEISKITARIG-------- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 796 mndELRLKERDVEELQLKLTKANENASFLQKSIEDmtvkaeqsqqeaaKKHEEEKKELERKLSDLEKKMETSHNQCQELK 875
Cdd:PRK03918 416 ---ELKKEIKELKKAIEELKKAKGKCPVCGRELTE-------------EHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 876 ARYERATSETKTKHEEI-LQNLQKTLLDTEDKLKG-AREENSGLLQELEELRKQADKAKAAQ-TAEDAMQIMEQMTKEKT 952
Cdd:PRK03918 480 KELRELEKVLKKESELIkLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLKGEIkSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 953 ETLASLEDTKQTNAKLQNELdtlKENNLKNVEELNKskelltvENQKMEEFRKEIETLKQAaaqkSQQLSALQEENVKLA 1032
Cdd:PRK03918 560 ELEKKLDELEEELAELLKEL---EELGFESVEELEE-------RLKELEPFYNEYLELKDA----EKELEREEKELKKLE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1033 EELGRSRDEVtshQKLEEERSVLNNQLLEMKKresKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTvlrgen 1112
Cdd:PRK03918 626 EELDKAFEEL---AETEKRLEELRKELEELEK---KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK------ 693
|
570 580
....*....|....*....|....*...
gi 2217290444 1113 ASAKSLHSVVQTLESDKVKLELKVKNLE 1140
Cdd:PRK03918 694 KTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
339-1011 |
7.26e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 7.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKdlalrvqEVAELR 418
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR-------EINELK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 419 RRLESNkpagdVDMSLSLLQEISSLQEKLEVTRTDHQrEITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLE 498
Cdd:TIGR02169 406 RELDRL-----QEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 499 HANKENSDVialwKSKLETAIASHQQAMEELKVSFS--KGLGTETAEFAELKTQIEKMRLDYQHEIE-----NLQN--QQ 569
Cdd:TIGR02169 480 RVEKELSKL----QRELAEAEAQARASEERVRGGRAveEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnRLNNvvVE 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 570 DSERAAHA----KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQ--HLVEMEDtlnKLQEAEIKVKELEVLQAKCNEQ 643
Cdd:TIGR02169 556 DDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFavDLVEFDP---KYEPAFKYVFGDTLVVEDIEAA 632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 644 TKVIDNFtsQLKATEEKLLDLDAL----RKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAvsv 719
Cdd:TIGR02169 633 RRLMGKY--RMVTLEGELFEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDEL--- 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 720 QRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 799
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 800 LRlkERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKkheeekkelerklsdLEKKMETSHNQCQELKAR-- 877
Cdd:TIGR02169 788 LS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY---------------LEKEIQELQEQRIDLKEQik 850
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 878 -YERATSETKTKHEEI---LQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAaqTAEDAMQIMEQMT----- 948
Cdd:TIGR02169 851 sIEKEIENLNGKKEELeeeLEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA--QIEKKRKRLSELKaklea 928
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 949 ---------------KEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE----------LNKSKELLTVENQKMEEF 1003
Cdd:TIGR02169 929 leeelseiedpkgedEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEyeevlkrldeLKEKRAKLEEERKAILER 1008
|
....*...
gi 2217290444 1004 RKEIETLK 1011
Cdd:TIGR02169 1009 IEEYEKKK 1016
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
7.64e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 69.71 E-value: 7.64e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217290444 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
336-1053 |
1.52e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 69.38 E-value: 1.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 336 HVLELEAKMDQLRTMVEAADREKVELLNQLEEekrkvedlQFRVEEESITKGDLEVATVSEKSRIM--ELEKDLALRVQE 413
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMYEDKIEELEK--------QLVLANSELTEARTERDQFSQESGNLddQLQKLLADLHKR 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 414 VAELRRRLESNKPAGDVDMSLSLlqEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENeSL 493
Cdd:pfam15921 390 EKELSLEKEQNKRLWDRDTGNSI--TIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS-SL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 494 KSKLEHANKENSDVIALWKSKLETaIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQhEIENLQNQQDSER 573
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMT-LESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ-ELQHLKNEGDHLR 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 574 AAHAkEMEALRAKLmkviKEKENSLEAIRSKLDKAED---QH-------LVEMEDTLNKLQEAEIKVKELEVLQAKCNEQ 643
Cdd:pfam15921 545 NVQT-ECEALKLQM----AEKDKVIEILRQQIENMTQlvgQHgrtagamQVEKAQLEKEINDRRLELQEFKILKDKKDAK 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 644 TKVIDNFTSQLKATEEKLLDldalrkASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSK----KEKFAEASEEavsv 719
Cdd:pfam15921 620 IRELEARVSDLELEKVKLVN------AGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDyevlKRNFRNKSEE---- 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 720 qrsMQETVNKLHQkeeQFNMLSSDLEKLRENLADMEAKfrekdereeqlikakeklendIAEIMKMSGDNSSQLTKMNDE 799
Cdd:pfam15921 690 ---METTTNKLKM---QLKSAQSELEQTRNTLKSMEGS---------------------DGHAMKVAMGMQKQITAKRGQ 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 800 LRLKERDVEELQLKLTKANENASFLQK-----SIEDMTVKAEQSQQE-AAKKHEEEKKELERKLSDLEKKMETSHNQ--- 870
Cdd:pfam15921 743 IDALQSKIQFLEEAMTNANKEKHFLKEeknklSQELSTVATEKNKMAgELEVLRSQERRLKEKVANMEVALDKASLQfae 822
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 871 CQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKgareenSGLLQELEELRKQADKAKAAQTAEdamQIMEQMTKE 950
Cdd:pfam15921 823 CQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMK------PRLLQPASFTRTHSNVPSSQSTAS---FLSHHSRKT 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 951 KTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQkmeeFRKEIETLKQAAAQKSQQLSALQEENVK 1030
Cdd:pfam15921 894 NALKEDPTRDLKQLLQELRSVINEEPTVQLSKAEDKGRAPSLGALDDR----VRDCIIESSLRSDICHSSSNSLQTEGSK 969
|
730 740
....*....|....*....|...
gi 2217290444 1031 LAEELgrSRDEVTSHQKLEEERS 1053
Cdd:pfam15921 970 SSETC--SREPVLLHAGELEDPS 990
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
339-1147 |
2.97e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 68.15 E-value: 2.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLEEEKrkvedLQFRVEEESITKGDLEVATVSEKSRIMELEKD--LALRVQEVAE 416
Cdd:TIGR00606 323 DCQRELEKLNKERRLLNQEKTELLVEQGRLQ-----LQADRHQEHIRARDSLIQSLATRLELDGFERGpfSERQIKNFHT 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 417 LRRRLESNKpagdvdmSLSLLQEISSLQEKLEVTrtdhQREITSLKEHFGAREETHQKEikalytaTEKLSKENESLKSK 496
Cdd:TIGR00606 398 LVIERQEDE-------AKTAAQLCADLQSKERLK----QEQADEIRDEKKGLGRTIELK-------KEILEKKQEELKFV 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 497 LEHANKENSDVIALWKSKLETAIASHQQAMEElkvsfsKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAH 576
Cdd:TIGR00606 460 IKELQQLEGSSDRILELDQELRKAERELSKAE------KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTT 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 577 AKEMEALRAKLM----KVIKEKENSLEAIRSKLDKAEDQHLVE------------MEDTLNKLQeaeikvKELEVLQAKC 640
Cdd:TIGR00606 534 RTQMEMLTKDKMdkdeQIRKIKSRHSDELTSLLGYFPNKKQLEdwlhskskeinqTRDRLAKLN------KELASLEQNK 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 641 NEQTKVIDNFTSQLKATEEKLLDLdalrKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVq 720
Cdd:TIGR00606 608 NHINNELESKEEQLSSYEDKLFDV----CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPV- 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 721 rsmqetVNKLHQKEEQFNMLSSDLE-KLR---ENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKM 796
Cdd:TIGR00606 683 ------CQRVFQTEAELQEFISDLQsKLRlapDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKV 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 797 NDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKA 876
Cdd:TIGR00606 757 NRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQH 836
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 877 RYERATSETK------TKHEEILQNLQKTL--LDTED-KLKGAREENSGLLQELEELRKQADKAKAA--QTAEDAMQIME 945
Cdd:TIGR00606 837 ELDTVVSKIElnrkliQDQQEQIQHLKSKTneLKSEKlQIGTNLQRRQQFEEQLVELSTEVQSLIREikDAKEQDSPLET 916
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 946 QMTKEKTETLASLEDTKQTNAKLQNELDTLKEnNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAaqksqQLSALQ 1025
Cdd:TIGR00606 917 FLEKDQQEKEELISSKETSNKKAQDKVNDIKE-KVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNA-----QLEECE 990
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1026 EENVKLAEELGRSRDEVTSHQKLEeerSVLNNQLLEMKKRESkfIKDADEEKASLQKSISitSALLTEKDAELEKLRNEV 1105
Cdd:TIGR00606 991 KHQEKINEDMRLMRQDIDTQKIQE---RWLQDNLTLRKRENE--LKEVEEELKQHLKEMG--QMQVLQMKQEHQKLEENI 1063
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 2217290444 1106 TVLRGENASAkslHSVVQTLESDKVKLELKVKNLELQLKENK 1147
Cdd:TIGR00606 1064 DLIKRNHVLA---LGRQKGYEKEIKHFKKELREPQFRDAEEK 1102
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
339-992 |
3.79e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 3.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRtmvEAADREKVELLNQLEEEKRKVEDLQFRVEEESiTKGDLEVATVSEKSRIMELEKdlalrvQEVAELR 418
Cdd:PTZ00121 1287 EEKKKADEAK---KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEAKKAAEAAK------AEAEAAA 1356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 419 RRLESNKPAGDVDmslsllqEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLE 498
Cdd:PTZ00121 1357 DEAEAAEEKAEAA-------EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 499 HANKENSDVIALWKSKLETAiasHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRldyqheienlqnqQDSERAAHAK 578
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEA---KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK-------------KADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 579 EMEALRAKLMKVIKEKENSLEAIRS-KLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKAT 657
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAeEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 658 EEKLLdldALRKASSEGKSEMKKLRQQLEAAEKQIKhleieKNAESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQF 737
Cdd:PTZ00121 1574 EDKNM---ALRKAEEAKKAEEARIEEVMKLYEEEKK-----MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 738 NMLSSDLEKLRENL---ADMEAKFREKDEREEQLIKAKEKLENDIAEimkmsgdnssQLTKMNDElrlkERDVEELQLKL 814
Cdd:PTZ00121 1646 KKKAEELKKAEEENkikAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE----------ALKKEAEE----AKKAEELKKKE 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 815 TKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELErklsDLEKKMETSHNQCQELKARYERATSETKTKHEEILQ 894
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK----DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 895 NLQKTLLDTEDKLKGAReENSGLLQE--------LEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNA 966
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIF-DNFANIIEggkegnlvINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNK 1866
|
650 660
....*....|....*....|....*..
gi 2217290444 967 KLQNELDT-LKENNLKNVEELNKSKEL 992
Cdd:PTZ00121 1867 EADFNKEKdLKEDDEEEIEEADEIEKI 1893
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
338-1013 |
1.77e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 338 LELEAKMDQLRTMVEAADREKVELlnQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAEL 417
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 418 RRRLEsnkpagdvdmslSLLQEISSLQEKLEVTRTDHQREITSLKEHfGAREETHQKEIKALYTATEKLSKENESLKSKL 497
Cdd:COG1196 294 LAELA------------RLEQDIARLEERRRELEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 498 EHANKENSDVIALWKSKLETAIASHQQAMEELKvsfskglgtETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHA 577
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALR---------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 578 KEMEALRAKLMKVIKEKENSLEairskLDKAEDQHLVEMEDTLNKLQEAEIKVKELEvlqakcneqtkvidnftsQLKAT 657
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAE-----LEEEEEALLELLAELLEEAALLEAALAELL------------------EELAE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 658 EEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAEsSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQf 737
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE-AAYEAALEAALAAALQNIVVEDDEVAAAAIEYL- 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 738 nmlssdlekLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLkltka 817
Cdd:COG1196 567 ---------KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL----- 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 818 nENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMEtshnqcqELKARYERATSETKTKHEEILQNLQ 897
Cdd:COG1196 633 -EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA-------ELEELAERLAEEELELEEALLAEEE 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 898 KTLLDTEDKLKGAREEnsgLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKE 977
Cdd:COG1196 705 EERELAEAEEERLEEE---LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
650 660 670
....*....|....*....|....*....|....*.
gi 2217290444 978 NNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQA 1013
Cdd:COG1196 782 VNLLAIEEYEELEERYDFLSEQREDLEEARETLEEA 817
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
341-1166 |
1.85e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 341 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEesitkgdlevatvsekSRIMELEKDLALRvQEVAELRRR 420
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNE----------------SNELHEKQKFYLR-QSVIDLQTK 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 421 LESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREIT-SLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEH 499
Cdd:pfam15921 119 LQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAkCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEE 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 500 AN----KENSDVIALWKSKLETAIASHQQAMEElKVSFSKGlgtetaEFAELKTQIEKMRLDYQHEIENLQNQQDSERAA 575
Cdd:pfam15921 199 ASgkkiYEHDSMSTMHFRSLGSAISKILRELDT-EISYLKG------RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQ 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 576 HAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQ----------HLVEMEDTLNKLQEA--------EIKVKELE--- 634
Cdd:pfam15921 272 LISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQarnqnsmymrQLSDLESTVSQLRSElreakrmyEDKIEELEkql 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 635 -VLQAKCNEQTKVIDNFTSQ---LKATEEKLL-DLDALRKASSEGKSEMKKL--------------RQQLEAAEKQIKHL 695
Cdd:pfam15921 352 vLANSELTEARTERDQFSQEsgnLDDQLQKLLaDLHKREKELSLEKEQNKRLwdrdtgnsitidhlRRELDDRNMEVQRL 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 696 EIEKNAESSKKEKFAEASEEAVSVQRSMQETVNKL-HQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEK 774
Cdd:pfam15921 432 EALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLtAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 775 LENDIAEIMKMSGDNSSQLTKMN------DELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEE 848
Cdd:pfam15921 512 IEATNAEITKLRSRVDLKLQELQhlknegDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVE 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 849 EkkelerklSDLEKKMETSHNQCQELKAryeratseTKTKHEEILQNLQKTLLDTEdklkgareensgllqeleelrkqA 928
Cdd:pfam15921 592 K--------AQLEKEINDRRLELQEFKI--------LKDKKDAKIRELEARVSDLE-----------------------L 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 929 DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEEL----NKSKELLTVENQKMEEFR 1004
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMetttNKLKMQLKSAQSELEQTR 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1005 KEIETLKQAAAQKSQQLSALQEEnvkLAEELGRSRDEVTSHQKLEEERSVLNnqllemkkRESKFIKdadEEKASLQKSI 1084
Cdd:pfam15921 713 NTLKSMEGSDGHAMKVAMGMQKQ---ITAKRGQIDALQSKIQFLEEAMTNAN--------KEKHFLK---EEKNKLSQEL 778
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1085 SITSallTEKDaeleKLRNEVTVLRgenasakslhsvvqtleSDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADED 1164
Cdd:pfam15921 779 STVA---TEKN----KMAGELEVLR-----------------SQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQES 834
|
..
gi 2217290444 1165 ER 1166
Cdd:pfam15921 835 VR 836
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
570-937 |
1.94e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 570 DSERAAHAKEMEALRAKLMK---VIKEKENSLEAIRSKLDKAEdqhlvEMEDTLNKLQEAEIKVKELEVLQAKcneqtKV 646
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERldlIIDEKRQQLERLRREREKAE-----RYQALLKEKREYEGYELLKEKEALE-----RQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 647 IDNFTSQLKATEEKLLDLDALRkasSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESskKEKFAEASEEAVSVQRSMQET 726
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEI---SELEKRLEEIEQLLEELNKKIKDLGEEEQLRV--KEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 727 VNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEndiaeimkmsgdnssqltkmnDELRLKERD 806
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK---------------------EELEDLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 807 VEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETK 886
Cdd:TIGR02169 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKR-ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2217290444 887 TKhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTA 937
Cdd:TIGR02169 452 KQ-EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
677-1194 |
2.28e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 677 EMKKLRQQLEAAEKQIKHLEIEKNaesSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAD--- 753
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLN---KDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNdke 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 754 -MEAKFREKDEREEQLIKAKEKLENDIAEIMKMSgdnsSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMt 832
Cdd:TIGR04523 118 qKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKE----KELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI- 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 833 vkaeQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKaryeratsETKTKHEEILQNLQKTLLDTEDKLKGARE 912
Cdd:TIGR04523 193 ----KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLK--------DNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 913 ENSGLLQELEELRKQADKAKaaqtaedamQIMEQMTKEKTETLASLEDTKqtNAKLQNELDTLKENNLKNVEELNKSKEL 992
Cdd:TIGR04523 261 EQNKIKKQLSEKQKELEQNN---------KKIKELEKQLNQLKSEISDLN--NQKEQDWNKELKSELKNQEKKLEEIQNQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 993 LTVENQKMEEFRKEIETLKQaaaqksqQLSALQEENVKLAEELGRSRDEV-----------TSHQKLEEERSVLNNQLLE 1061
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKK-------ELTNSESENSEKQRELEEKQNEIeklkkenqsykQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1062 MKKRESKF---IKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLrgeNASAKSLHSVVQTLESDKVKLELKVKN 1138
Cdd:TIGR04523 403 QEKLNQQKdeqIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVK---ELIIKNLDNTRESLETQLKVLSRSINK 479
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217290444 1139 LELQLKENKRQLSSssgntdtqadederaQESQIDFLNSVIVDLQRKNQDLKMKVE 1194
Cdd:TIGR04523 480 IKQNLEQKQKELKS---------------KEKELKKLNEEKKELEEKVKDLTKKIS 520
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
339-1230 |
2.72e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 65.46 E-value: 2.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVedlqFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAE-- 416
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDS----IHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDkn 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 417 --LRRRLESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDhqREITSLKEHFgarEETHQKEIKALYTATEKLSKENESlk 494
Cdd:TIGR01612 617 eyIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKD--KIYSTIKSEL---SKIYEDDIDALYNELSSIVKENAI-- 689
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 495 sklehANKENsdvialwKSKLEtaiashqqameelkvsfskglgtetaefaELKTQIEKmrldyqhEIENLQNQQDSERA 574
Cdd:TIGR01612 690 -----DNTED-------KAKLD-----------------------------DLKSKIDK-------EYDKIQNMETATVE 721
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 575 AHAKEMEALRAKLMKVIKE-KENSLEAIRSKLDKAedqhlveMEDTLNKLQEAEIKVKELevlqAKCNEQTKVIDNFTSQ 653
Cdd:TIGR01612 722 LHLSNIENKKNELLDIIVEiKKHIHGEINKDLNKI-------LEDFKNKEKELSNKINDY----AKEKDELNKYKSKISE 790
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 654 LKATEEKLLDLDALRKasSEGKSEMKKLRQQLEAAekQIKHLEIEK--NAESSKKEKFAEASEEAVSVQRSMQETVNKLH 731
Cdd:TIGR01612 791 IKNHYNDQINIDNIKD--EDAKQNYDKSKEYIKTI--SIKEDEIFKiiNEMKFMKDDFLNKVDKFINFENNCKEKIDSEH 866
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 732 qkeEQFNMLSSDL--EKLRENLADMEAKFREkdereeqlikaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEE 809
Cdd:TIGR01612 867 ---EQFAELTNKIkaEISDDKLNDYEKKFND-----------SKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKES 932
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 810 LQLKLTKANENASFLQKSIEdmTVKAEQSQQeaakkheeekkelerkLSDLEKKMETSHNQCQEL-KARYERATSETKTK 888
Cdd:TIGR01612 933 IEKFHNKQNILKEILNKNID--TIKESNLIE----------------KSYKDKFDNTLIDKINELdKAFKDASLNDYEAK 994
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 889 HEEILQ---NLQKTLldtedklkGAREENSgLLQELEElrkqadkakaaqtAEDAMQIMEQMTKEKTETLASLEDTKQTN 965
Cdd:TIGR01612 995 NNELIKyfnDLKANL--------GKNKENM-LYHQFDE-------------KEKATNDIEQKIEDANKNIPNIEIAIHTS 1052
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 966 akLQNELDTLKENNLKNVEELNksKELLTVENQKMEEFRKEIETLKQAAAQksqqlSALQEENVKLAEELGRSRDEV-TS 1044
Cdd:TIGR01612 1053 --IYNIIDEIEKEIGKNIELLN--KEILEEAEINITNFNEIKEKLKHYNFD-----DFGKEENIKYADEINKIKDDIkNL 1123
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1045 HQKLEEERsvlnNQLLEMKKRESKFIkdaDEEKASLQKSISITSALLTEKDAE--LEKLRNEVTVLRGEN---ASAKSLH 1119
Cdd:TIGR01612 1124 DQKIDHHI----KALEEIKKKSENYI---DEIKAQINDLEDVADKAISNDDPEeiEKKIENIVTKIDKKKniyDEIKKLL 1196
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1120 SVVQTLESDKVKLElKVKNLELQLKENKRQLSSSsgntdtQADEDERAQESQIDFLNSVIVDLQR-KNQDLKMKVEMMSE 1198
Cdd:TIGR01612 1197 NEIAEIEKDKTSLE-EVKGINLSYGKNLGKLFLE------KIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIENEMGIE 1269
|
890 900 910
....*....|....*....|....*....|....
gi 2217290444 1199 AALNGNGDDLNNYDSDDQEKQ--SKKKPRLFCDI 1230
Cdd:TIGR01612 1270 MDIKAEMETFNISHDDDKDHHiiSKKHDENISDI 1303
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
431-1150 |
2.90e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.99 E-value: 2.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 431 DMSLSLLQEISSLQEKLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSdvial 510
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHE----RKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLK----- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 511 WKSKLETAIASHQQAMEELKVSfskglgTETAEFAELKTQIEKMRLDYQHEIEnlQNQQDSERAAHAKEMEALRAKLM-- 588
Cdd:TIGR00618 258 KQQLLKQLRARIEELRAQEAVL------EETQERINRARKAAPLAAHIKAVTQ--IEQQAQRIHTELQSKMRSRAKLLmk 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 589 -KVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQaKCNEQTKVIDNFTSQLKATEEKLLDLDAL 667
Cdd:TIGR00618 330 rAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ-HIHTLQQQKTTLTQKLQSLCKELDILQRE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 668 RKASSEGKSEMKKLRQQLEAAEKQIkhlEIEKNAESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKL 747
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQ---ELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 748 RENLAdMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKS 827
Cdd:TIGR00618 486 TRKKA-VVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 828 IEdmtvKAEQSQQEAAKKHEEEKKELERKLSDLEK-KMETSHNQCQELKARYERATSETKTKHEeilQNLQKTLLDTEDK 906
Cdd:TIGR00618 565 MQ----EIQQSFSILTQCDNRSKEDIPNLQNITVRlQDLTEKLSEAEDMLACEQHALLRKLQPE---QDLQDVRLHLQQC 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 907 LKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQmtkektetlasledtkqtNAKLQNELDTLKENNLKNVEEL 986
Cdd:TIGR00618 638 SQELALKLTALHALQLTLTQERVREHALSIRVLPKELLAS------------------RQLALQKMQSEKEQLTYWKEML 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 987 NKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRE 1066
Cdd:TIGR00618 700 AQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1067 skfIKDADEEKASLQKSISITSALLTEKDAELEKLRNEvtvlrGENASAKSLHSVVQTLESDKVKLELK------VKNLE 1140
Cdd:TIGR00618 780 ---LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPS-----DEDILNLQCETLVQEEEQFLSRLEEKsatlgeITHQL 851
|
730
....*....|
gi 2217290444 1141 LQLKENKRQL 1150
Cdd:TIGR00618 852 LKYEECSKQL 861
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-955 |
6.41e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 6.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 335 LHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEV 414
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 415 AELRRRLEsnkpagdvdmslSLLQEISSLQEKLEvtrtDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLK 494
Cdd:COG1196 312 RELEERLE------------ELEEELAELEEELE----ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 495 SKLEHANKENSDVIALWKSKLE--TAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQdsE 572
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAElaAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA--E 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 573 RAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIkVKELEVLQAKCNEQTKVIDNFTS 652
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG-VKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 653 QLKATEEKLLDLDALRKAssegksemkKLRQQLEAAEKQIKHLEIEKNA--------ESSKKEKFAEASEEAVSVQRSMQ 724
Cdd:COG1196 533 EAAYEAALEAALAAALQN---------IVVEDDEVAAAAIEYLKAAKAGratflpldKIRARAALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 725 ETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEklendiAEIMKMSGDNSSQLTKMNDELRLKE 804
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE------GEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 805 RdvEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSE 884
Cdd:COG1196 678 E--AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 885 TKTkhEEILQNLQKTLldteDKLKGAREE----NSGLLQELEELRKQAD-----KAKAAQTAEDAMQIMEQMTKEKTETL 955
Cdd:COG1196 756 LPE--PPDLEELEREL----ERLEREIEAlgpvNLLAIEEYEELEERYDflseqREDLEEARETLEEAIEEIDRETRERF 829
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
339-833 |
1.05e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVEL---LNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKdlalRVQEVA 415
Cdd:PRK03918 211 EISSELPELREELEKLEKEVKELeelKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE----KVKELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 416 ELRRR-LESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQK--EIKALYTATEKLSKENES 492
Cdd:PRK03918 287 ELKEKaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKlkELEKRLEELEERHELYEE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 493 LKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgLGTETAEF----AELKTQIEKM-----------RLD 557
Cdd:PRK03918 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK-ITARIGELkkeiKELKKAIEELkkakgkcpvcgREL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 558 YQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENsLEAIRSKLDKaedqhLVEMEDTLNKLQEAEIKVKE--LEV 635
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE-LEKVLKKESE-----LIKLKELAEQLKELEEKLKKynLEE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 636 LQAKCNEQTKV---IDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKK-EKFAE 711
Cdd:PRK03918 520 LEKKAEEYEKLkekLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERlKELEP 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 712 ASEEAVSVQRSMQEtvnkLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIK--AKEKLENDIAEIMKMSGDN 789
Cdd:PRK03918 600 FYNEYLELKDAEKE----LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKkySEEEYEELREEYLELSREL 675
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2217290444 790 SS------QLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTV 833
Cdd:PRK03918 676 AGlraeleELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
339-840 |
1.30e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.75 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEE--ESITKGDLEVATVSEksRIMELEKDLalrvqevAE 416
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDllAEAGLDDADAEAVEA--RREELEDRD-------EE 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 417 LRRRLESNKPA-----GDVDmslSLLQEISSLQEKLEVTRTDHQR---EITSLKEHFGAREETH---QKEIKALY----- 480
Cdd:PRK02224 326 LRDRLEECRVAaqahnEEAE---SLREDADDLEERAEELREEAAElesELEEAREAVEDRREEIeelEEEIEELRerfgd 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 481 --TATEKLSKENESLKSKLEHANKENSDVIALWKSkLETAIASHQQAMEELKVSfSKGLGTETAEFAELKTQIEKMRLDY 558
Cdd:PRK02224 403 apVDLGNAEDFLEELREERDELREREAELEATLRT-ARERVEEAEALLEAGKCP-ECGQPVEGSPHVETIEEDRERVEEL 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 559 QHEIENLQNQQDS-----ERAAHAKEMEALRAKLM-------KVIKEKENSLEAIRSK---LDKAEDQHLVEMEDTLNKL 623
Cdd:PRK02224 481 EAELEDLEEEVEEveerlERAEDLVEAEDRIERLEerredleELIAERRETIEEKRERaeeLRERAAELEAEAEEKREAA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 624 QEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRkassegkSEMKKLRQQLEAAEkqikhleiEKNAES 703
Cdd:PRK02224 561 AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAE-------DEIERLREKREALA--------ELNDER 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 704 skKEKFAEASEEavsvQRSMQETVNklhqkEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIm 783
Cdd:PRK02224 626 --RERLAEKRER----KRELEAEFD-----EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL- 693
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217290444 784 kmsgdnssqltkmnDELRLKERDVEELQLKLTKANENASFLQKSIedMTVKAEQSQQ 840
Cdd:PRK02224 694 --------------EELRERREALENRVEALEALYDEAEELESMY--GDLRAELRQR 734
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
410-782 |
2.14e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 410 RVQEVAELRRRLESnkpagdvdmslsLLQEISSLQEKLEVTRTDhQREITSLKEHFGAREETHQKEIKALYTATEKLSKE 489
Cdd:TIGR02168 675 RRREIEELEEKIEE------------LEEKIAELEKALAELRKE-LEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 490 NESLKSKLEHANKENSDVIA------LWKSKLETAIASHQQAMEELKVSFSKGLGtetaEFAELKTQIEKMRLDYQHEIE 563
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAeieeleERLEEAEEELAEAEAEIEELEAQIEQLKE----ELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 564 NLQNQQdSERAAHAKEMEALRaklmKVIKEKENSLEAIRSKLDKAEDQHLvEMEDTLNKLQEA-EIKVKELEVLQAKCNE 642
Cdd:TIGR02168 818 EAANLR-ERLESLERRIAATE----RRLEDLEEQIEELSEDIESLAAEIE-ELEELIEELESElEALLNERASLEEALAL 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 643 QTKVIDNFTSQLKATEEKLLDLDALRKASSEgksEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAV-SVQR 721
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEE 968
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217290444 722 SMQETVNKLHQKEEQF---NMLSsdLEKLREnladMEAKFREKDEREEQLIKAKEKLENDIAEI 782
Cdd:TIGR02168 969 EARRRLKRLENKIKELgpvNLAA--IEEYEE----LKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
580-1065 |
3.04e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 61.32 E-value: 3.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 580 MEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEdtlNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEE 659
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKPELNLKELKELE---EELKEAEEKEEEYAELQEELEELEEELEELEAELEELRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 660 KLLDLDALRKASSEGKsEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQfnm 739
Cdd:COG4717 117 ELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEE--- 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 740 lssDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERDVEELQLKLTKANE 819
Cdd:COG4717 193 ---ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL---------------ENELEAAALEERLKEARLLLLI 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 820 NASFLqkSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSEtKTKHEEILQNLQKT 899
Cdd:COG4717 255 AAALL--ALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELE-EEELEELLAALGLP 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 900 LLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEnn 979
Cdd:COG4717 332 PDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEE-- 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 980 lkNVEELNKSKELLTVENQKmEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEvTSHQKLEEERSVLNNQL 1059
Cdd:COG4717 410 --QLEELLGELEELLEALDE-EELEEELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAEL 485
|
....*.
gi 2217290444 1060 LEMKKR 1065
Cdd:COG4717 486 RELAEE 491
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
339-899 |
3.42e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 3.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAaDREKVELLNQLEEEKRKVEDLQFRVEEesITKGDlEVATVSEKSRIMELEKDLALRVQEVAELR 418
Cdd:PTZ00121 1388 EEKKKADEAKKKAEE-DKKKADELKKAAAAKKKADEAKKKAEE--KKKAD-EAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 419 RRLESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKalytATEKLSKENESLKSKLE 498
Cdd:PTZ00121 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK----KADEAKKAEEAKKADEA 1539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 499 HANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAElktQIEKMRLDyqhEIENLQNQQDSERAAHAK 578
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK---KAEEARIE---EVMKLYEEEKKMKAEEAK 1613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 579 EMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEM---EDTLNKLQEAEIKVKELE----VLQAKCNEQTKviDNFT 651
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEElkkAEEENKIKAAEEAKKAEEdkkkAEEAKKAEEDE--KKAA 1691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 652 SQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEaaEKQIKHLEIEKNAESSKKEkfaeaSEEAvsvqRSMQETVNKLH 731
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE--ENKIKAEEAKKEAEEDKKK-----AEEA----KKDEEEKKKIA 1760
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 732 QKEEQFNMLSSDLEKLRENLadMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKE----RDV 807
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAikevADS 1838
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 808 EELQLKLTKANENASFLQKSI--EDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSET 885
Cdd:PTZ00121 1839 KNMQLEEADAFEKHKFNKNNEngEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDK 1918
|
570
....*....|....
gi 2217290444 886 KTKHEEILQNLQKT 899
Cdd:PTZ00121 1919 LDKDEYIKRDAEET 1932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
906-1207 |
4.25e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 4.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 906 KLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE 985
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 986 LNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEenvKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKR 1065
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE---ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1066 ESKFIKDADEEKASLQksisitsALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1145
Cdd:COG1196 374 LAEAEEELEELAEELL-------EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217290444 1146 NKRQLSSSSgNTDTQADEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGDD 1207
Cdd:COG1196 447 AAEEEAELE-EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
902-1200 |
4.87e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 4.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 902 DTEDKLKGARE---ENSGLLQELE----ELRKQADKAKAAQTAEDAMQImeqmtKEKTETLASLEDTKQTNAKLQNELDT 974
Cdd:COG1196 176 EAERKLEATEEnleRLEDILGELErqlePLERQAEKAERYRELKEELKE-----LEAELLLLKLRELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 975 LKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEEnvkLAEELGRSRDEVTSHQKLEEERSV 1054
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD---IARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1055 LNNQLLEMKKRESKFIKDADEEKASLQksisitsALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLEL 1134
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELE-------EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217290444 1135 KVKNLELQLKEnkrqlssssgntdtQADEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAA 1200
Cdd:COG1196 401 QLEELEEAEEA--------------LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
535-950 |
5.72e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.55 E-value: 5.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 535 KGLGTETAEFAELKTQIEKMRldyqHEIENLQNQQDSERAAHAKEMEALRA-KLMKVIKEKENSLEAIRSKLDKAEdQHL 613
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELE----EELEELEAELEELREELEKLEKLLQLlPLYQELEALEAELAELPERLEELE-ERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 614 VEMEDTLNKLQEAEikvKELEVLQAKCNEQTKVIDNftSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIK 693
Cdd:COG4717 156 EELRELEEELEELE---AELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 694 HLEIEKNAESSKKE-KFAEASEEAVSVQRSMQETVNKLHQKEEQ---------------FNMLSSDLEKLRENLADMEAK 757
Cdd:COG4717 231 QLENELEAAALEERlKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllallFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 758 FREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQ---KSIEDMTVK 834
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEagvEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 835 AEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEiLQNLQKTLLDTEDKLKGAREEN 914
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE-LEELREELAELEAELEQLEEDG 469
|
410 420 430
....*....|....*....|....*....|....*....
gi 2217290444 915 --SGLLQELEELRKQ-ADKAKAAQTAEDAMQIMEQMTKE 950
Cdd:COG4717 470 elAELLQELEELKAElRELAEEWAALKLALELLEEAREE 508
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
615-1153 |
6.21e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.42 E-value: 6.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 615 EMEDTLNKLQEaEIKVKELEV--LQAKCNEQTKVIDNFTSQLKATEEKLLDL-----------DALRKASSEGKSEMKKL 681
Cdd:TIGR04523 37 QLEKKLKTIKN-ELKNKEKELknLDKNLNKDEEKINNSNNKIKILEQQIKDLndklkknkdkiNKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 682 RQQLEAAEKQIKHLEIEKNaesskkekfaeaseeavsvqrsmqetvnklhQKEEQFNMLSSDLEKLRENLADMEAKFREK 761
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKK-------------------------------ENKKNIDKFLTEIKKKEKELEKLNNKYNDL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 762 DEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMN---DELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQS 838
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 839 QQEAakkheeekkelerklSDLEKKMETSHNQCQELKARYERATSETKTKHEEI------LQNLQKTLLD-----TEDKL 907
Cdd:TIGR04523 245 TTEI---------------SNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIkelekqLNQLKSEISDlnnqkEQDWN 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 908 KGAREENSGLLQELEELRKQADKAKaaQTAEDAMQIMEQMTKEKTE-TLASLEDTKQTNAKlQNELDTLKENNLKNVEEL 986
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNN--KIISQLNEQISQLKKELTNsESENSEKQRELEEK-QNEIEKLKKENQSYKQEI 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 987 NKSKelltvenQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQK----LEEERSVLNNQLLEM 1062
Cdd:TIGR04523 387 KNLE-------SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSeikdLTNQDSVKELIIKNL 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1063 KKRESKF---IKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAK----SLHSVVQTLESDKVKLELK 1135
Cdd:TIGR04523 460 DNTRESLetqLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTkkisSLKEKIEKLESEKKEKESK 539
|
570
....*....|....*...
gi 2217290444 1136 VKNLELQLKENKRQLSSS 1153
Cdd:TIGR04523 540 ISDLEDELNKDDFELKKE 557
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
598-1104 |
1.18e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.93 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 598 LEAIRSKLDKAEDQ--HLVEMEDTLNKLQEAEIKVKELEVL---------QAKCNEQTKVIDNFTSQLKATEEKLLDLDA 666
Cdd:COG4913 237 LERAHEALEDAREQieLLEPIRELAERYAAARERLAELEYLraalrlwfaQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 667 LRKASSEGKSEMKKLR-----QQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEA-VSVQRSMQETVNKLHQKEEQFNML 740
Cdd:COG4913 317 RLDALREELDELEAQIrgnggDRLEQLEREIERLERELEERERRRARLEALLAALgLPLPASAEEFAALRAEAAALLEAL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 741 SSDLEKLRENLADMEAKFREKDEREEQLikakeklENDIAEIMKMSGDNSSQLTKM----NDELRLKERDV----EELQL 812
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELREL-------EAEIASLERRKSNIPARLLALrdalAEALGLDEAELpfvgELIEV 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 813 KltkaNENASFlQKSIE--------DMTVKAEQSQQ----------------EAAKKHEEEKKELERKLSDLEKKMETSH 868
Cdd:COG4913 470 R----PEEERW-RGAIErvlggfalTLLVPPEHYAAalrwvnrlhlrgrlvyERVRTGLPDPERPRLDPDSLAGKLDFKP 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 869 NQCQE-LKARYERATSETKTKHEEILQNLQKTL----------------------------LDTEDKLKGAREENSGLLQ 919
Cdd:COG4913 545 HPFRAwLEAELGRRFDYVCVDSPEELRRHPRAItragqvkgngtrhekddrrrirsryvlgFDNRAKLAALEAELAELEE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 920 ELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKnVEELnkskelltveNQK 999
Cdd:COG4913 625 ELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD-LAAL----------EEQ 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1000 MEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKRESKFIKDADEEKAS 1079
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL---EAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
570 580
....*....|....*....|....*
gi 2217290444 1080 LQKSISITSALLTEKDAELEKLRNE 1104
Cdd:COG4913 771 LEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
591-822 |
1.21e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 591 IKEKENSLEAIRSKLDKAEDQhlvemedtLNKLQEAEIKV-KELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDAlrk 669
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKE--------LAALKKEEKALlKQLAALERRIAALARRIRALEQELAALEAELAELEK--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 670 assegksEMKKLRQQLEAAEKQIKHL--EIEKNAESSKkEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKL 747
Cdd:COG4942 91 -------EIAELRAELEAQKEELAELlrALYRLGRQPP-LALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217290444 748 RENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENAS 822
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
339-1075 |
4.83e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 58.14 E-value: 4.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVEllnqleeEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVqeVAELR 418
Cdd:TIGR01612 672 DIDALYNELSSIVKENAIDNTE-------DKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDI--IVEIK 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 419 RRLEsnkpaGDVDMSLS-LLQEISSLQEKLEVTRTDHQRE----------ITSLKEHFGAR---EETHQKEIKALYTATE 484
Cdd:TIGR01612 743 KHIH-----GEINKDLNkILEDFKNKEKELSNKINDYAKEkdelnkykskISEIKNHYNDQiniDNIKDEDAKQNYDKSK 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 485 KLS-----KENESLKS-------------------KLEHANKENSDV----IALWKSKLETAIASHQQAMEELKVSFSKG 536
Cdd:TIGR01612 818 EYIktisiKEDEIFKIinemkfmkddflnkvdkfiNFENNCKEKIDSeheqFAELTNKIKAEISDDKLNDYEKKFNDSKS 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 537 LGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEmEALRAKLMKVIKEKENSLEAIRSKLDKaedqhlveM 616
Cdd:TIGR01612 898 LINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQ-NILKEILNKNIDTIKESNLIEKSYKDK--------F 968
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 617 EDTL-NKLQEAEIKVKELEV--LQAKCNEQTKVIDNFTSQLKATEEKLL--DLDALRKASSEgksemkkLRQQLEAAEKQ 691
Cdd:TIGR01612 969 DNTLiDKINELDKAFKDASLndYEAKNNELIKYFNDLKANLGKNKENMLyhQFDEKEKATND-------IEQKIEDANKN 1041
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 692 IKHLEIEKNAEsskkekFAEASEEAVSVQRSMQETVNKLHQKEEQFNMlsSDLEKLRENLadmeaKFREKDE--REEQLI 769
Cdd:TIGR01612 1042 IPNIEIAIHTS------IYNIIDEIEKEIGKNIELLNKEILEEAEINI--TNFNEIKEKL-----KHYNFDDfgKEENIK 1108
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 770 KAKE--KLENDIAEIMKMSGDNSSQLTKMN-------DELRLKERDVEELQLKlTKANENASFLQKSIEDMTVKAEQSQQ 840
Cdd:TIGR01612 1109 YADEinKIKDDIKNLDQKIDHHIKALEEIKkksenyiDEIKAQINDLEDVADK-AISNDDPEEIEKKIENIVTKIDKKKN 1187
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 841 --EAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTED-KLKGAREENSGL 917
Cdd:TIGR01612 1188 iyDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIENEMG 1267
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 918 LQ-----ELEELRKQADKAKAAQTA------------EDAMQIMEQMTKE------KTETLASLEDTKQTNAKLQNELDT 974
Cdd:TIGR01612 1268 IEmdikaEMETFNISHDDDKDHHIIskkhdenisdirEKSLKIIEDFSEEsdindiKKELQKNLLDAQKHNSDINLYLNE 1347
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 975 LkeNNLKNVEELNKSKELLtvenQKMEEFRKEIETLKQ---AAAQKSQQLSALQEENVKLAEelGRSRDEVTSHQKLEEE 1051
Cdd:TIGR01612 1348 I--ANIYNILKLNKIKKII----DEVKEYTKEIEENNKnikDELDKSEKLIKKIKDDINLEE--CKSKIESTLDDKDIDE 1419
|
810 820
....*....|....*....|....*...
gi 2217290444 1052 ----RSVLNNQLLEMKKRESKFIKDADE 1075
Cdd:TIGR01612 1420 cikkIKELKNHILSEESNIDTYFKNADE 1447
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
881-1085 |
5.24e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 5.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 881 ATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ-ADKAKAAQTAEDAMQIMEQ----MTKEKTETL 955
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiAALARRIRALEQELAALEAelaeLEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 956 ASLEDTKQTNAKLQNELDTLKENN----LKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKL 1031
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2217290444 1032 AEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSIS 1085
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
703-1068 |
7.92e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.90 E-value: 7.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 703 SSKKEKFAEASEEAVSVQRSMQ---ETVNKLHQKEEQFNMLSSDLEKLRENLADMEAkfREKDEREEQLIKAKEKLENDI 779
Cdd:pfam02463 148 AMMKPERRLEIEEEAAGSRLKRkkkEALKKLIEETENLAELIIDLEELKLQELKLKE--QAKKALEYYQLKEKLELEEEY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 780 AEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTvKAEQSQQEAAKKHEEEKKELERKLSD 859
Cdd:pfam02463 226 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEE-KEKKLQEEELKLLAKEEEELKSELLK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 860 LEKKMETSHNQCQELKARYERATSETKTKHEEILQnLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAED 939
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE-LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 940 AMQIMEQMTKEKTETLASLEdtkqtnAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQ 1019
Cdd:pfam02463 384 ERLSSAAKLKEEELELKSEE------EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE 457
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2217290444 1020 QLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESK 1068
Cdd:pfam02463 458 LKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
339-774 |
8.29e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 8.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLE--EEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAE 416
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 417 LRRRLESNKPAGdvdmslsllQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKAlytatEKLSKENESLKSK 496
Cdd:PTZ00121 1611 EAKKAEEAKIKA---------EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA-----AEEAKKAEEDKKK 1676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 497 LEHANKENSDvialwksKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENlQNQQDSERAAH 576
Cdd:PTZ00121 1677 AEEAKKAEED-------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK-EAEEDKKKAEE 1748
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 577 AKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIK--VKELEVLQAKCNEQTKVIDNFTSQL 654
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKdiFDNFANIIEGGKEGNLVINDSKEME 1828
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 655 KATEEKLLDldalrkaSSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVsVQRSMQETVNK--LHQ 732
Cdd:PTZ00121 1829 DSAIKEVAD-------SKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEI-EEADEIEKIDKddIER 1900
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 2217290444 733 KEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEK 774
Cdd:PTZ00121 1901 EIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIKISKK 1942
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1265-1281 |
9.39e-08 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 9.39e-08
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
339-1200 |
1.00e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKD-LALRVQEVAEL 417
Cdd:pfam01576 72 ELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDiLLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 418 RRRLESNKPAGDVDMSLSLLQEISSLQEKLevtRTDHQREITSLkehfgarEETHQKEikalytatEKLSKENESLKSKL 497
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSLSKL---KNKHEAMISDL-------EERLKKE--------EKGRQELEKAKRKL 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 498 EHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgLGTETAEfaelKTQIEKMRLDYQHEIENLQNQQDSERAAha 577
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALAR-LEEETAQ----KNNALKKIRELEAQISELQEDLESERAA-- 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 578 kemealRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEME---------DTLNKLQEAEIKVKELEVLQAKcNEQTKVID 648
Cdd:pfam01576 287 ------RNKAEKQRRDLGEELEALKTELEDTLDTTAAQQElrskreqevTELKKALEEETRSHEAQLQEMR-QKHTQALE 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 649 NFTSQLKATEEKLLDLD----ALRKASSEGKSEMKKLRQQLEAAEKQIKHLEI---EKNAESSKKEKF-AEASEEAVSVQ 720
Cdd:pfam01576 360 ELTEQLEQAKRNKANLEkakqALESENAELQAELRTLQQAKQDSEHKRKKLEGqlqELQARLSESERQrAELAEKLSKLQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 721 RSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDN-------SSQL 793
Cdd:pfam01576 440 SELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEeeakrnvERQL 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 794 TKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQ-------------QEAAKKHEEEKKELERKLSDL 860
Cdd:pfam01576 520 STLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAaaydklektknrlQQELDDLLVDLDHQRQLVSNL 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 861 EKKMETSHNQCQELK---ARY----ERATSETKTKHEEILqNLQKTLLDTEDKLKGAREENSGLLQELEEL-RKQADKAK 932
Cdd:pfam01576 600 EKKQKKFDQMLAEEKaisARYaeerDRAEAEAREKETRAL-SLARALEEALEAKEELERTNKQLRAEMEDLvSSKDDVGK 678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 933 AAQTAEDAMQIMEQMTKEKTETLASLEDTKQT--NAKLQNE-----LDTLKENNLKNVEELNKSKELLTVenQKMEEFRK 1005
Cdd:pfam01576 679 NVHELERSKRALEQQVEEMKTQLEELEDELQAteDAKLRLEvnmqaLKAQFERDLQARDEQGEEKRRQLV--KQVRELEA 756
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1006 EIETLK----QAAAQKSQQLSALQEENVKLaEELGRSRDE-VTSHQKLEEERSVLNNQLLEMK-KRESKFIKDADEEKAS 1079
Cdd:pfam01576 757 ELEDERkqraQAVAAKKKLELDLKELEAQI-DAANKGREEaVKQLKKLQAQMKDLQRELEEARaSRDEILAQSKESEKKL 835
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1080 lqKSISITSALLTEKDAELEKLRNEVTVLRGE-------NASAKSLhsvvqtLESDKVKLELKVKNLELQLKENKrqlss 1152
Cdd:pfam01576 836 --KNLEAELLQLQEDLAASERARRQAQQERDEladeiasGASGKSA------LQDEKRRLEARIAQLEEELEEEQ----- 902
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217290444 1153 ssGNTDTQADEDERAQeSQIDFLNSVIV--------------DLQRKNQDLKMKVEMMSEAA 1200
Cdd:pfam01576 903 --SNTELLNDRLRKST-LQVEQLTTELAaerstsqksesarqQLERQNKELKAKLQEMEGTV 961
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
740-977 |
2.82e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 740 LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnSSQLTKMNDELRLKERDVEELQLKLTKANE 819
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL-------ARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 820 NASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLekkmetshnqcqelkaRYERATSETKTKHEEILQNLQKT 899
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL----------------QYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 900 LLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTaedamQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKE 977
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQ-----KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
339-928 |
6.72e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.07 E-value: 6.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITK--GDLEVATVSEKSRIMELEKDLALRVqevAE 416
Cdd:pfam12128 372 DVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQAleSELREQLEAGKLEFNEEEYRLKSRL---GE 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 417 LRRRLESNKPAGDVDMSLSLLQE-ISSLQEKLE---VTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENES 492
Cdd:pfam12128 449 LKLRLNQATATPELLLQLENFDErIERAREEQEaanAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 493 LKSK----LEHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENlqnQ 568
Cdd:pfam12128 529 LFPQagtlLHFLRKE----APDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEE---E 601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 569 QDSERAAHAKEMEALRAKlmkvIKEKENSLEAIRSKLDKAEdqhlVEMEDTLNKLQEAEIKVKELEVLQAkcNEQTKVID 648
Cdd:pfam12128 602 LRERLDKAEEALQSAREK----QAAAEEQLVQANGELEKAS----REETFARTALKNARLDLRRLFDEKQ--SEKDKKNK 671
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 649 NFTSQLKATEEKLLDLDAlrkassEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSMQETVN 728
Cdd:pfam12128 672 ALAERKDSANERLNSLEA------QLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGA 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 729 KLHQKEEQFNMlSSDLEKL---RENLADMEAKFREKDEREEQLikakEKLENDIAEIMK-MSGDNSSQLTKMNDELRLKE 804
Cdd:pfam12128 746 KAELKALETWY-KRDLASLgvdPDVIAKLKREIRTLERKIERI----AVRRQEVLRYFDwYQETWLQRRPRLATQLSNIE 820
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 805 RDVEELQLKLTKANENASFLQKSIEdMTVKAEQSQQEAAKKHEEEKKELERKLSDLekKMETSHNQCQELKARYERATSE 884
Cdd:pfam12128 821 RAISELQQQLARLIADTKLRRAKLE-MERKASEKQQVRLSENLRGLRCEMSKLATL--KEDANSEQAQGSIGERLAQLED 897
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2217290444 885 TKTKHEEILQNLQKTLLDteDKLKGAREENSGLLQELEELRKQA 928
Cdd:pfam12128 898 LKLKRDYLSESVKKYVEH--FKNVIADHSGSGLAETWESLREED 939
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
522-1170 |
6.83e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 6.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 522 HQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERaahaKEMEALRaklmKVIKEKENSLEAI 601
Cdd:pfam05483 61 YQEGLKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENR----KIIEAQR----KAIQELQFENEKV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 602 RSKLDKaedqhlvEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLD--------ALRKASSE 673
Cdd:pfam05483 133 SLKLEE-------EIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNnniekmilAFEELRVQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 674 GKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKfaeaseeavsvqrSMQETVNKLHQKEEQFNMLSSDLEKLRENLAD 753
Cdd:pfam05483 206 AENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK-------------QVSLLLIQITEKENKMKDLTFLLEESRDKANQ 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 754 MEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEEL-------QLKLTKANENASFLQK 826
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLteekeaqMEELNKAKAAHSFVVT 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 827 SIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKmETSHNQCQELKARYERATSETKT--KHEEILQNLQKTLLDTE 904
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK-SSELEEMTKFKNNKEVELEELKKilAEDEKLLDEKKQFEKIA 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 905 DKLKGAREENSGLLQELE-ELRKQADKAKAAQTAED--AMQIMEQMTKEKTETLASLEDTKQTNaKLQNELDTLKENNLK 981
Cdd:pfam05483 432 EELKGKEQELIFLLQAREkEIHDLEIQLTAIKTSEEhyLKEVEDLKTELEKEKLKNIELTAHCD-KLLLENKELTQEASD 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 982 NVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEEnvklaeeLGRSRDEVTSHQKLEEERSVLNNQLLE 1061
Cdd:pfam05483 511 MTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREE-------FIQKGDEVKCKLDKSEENARSIEYEVL 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1062 MKKRESKFIKDADEekaSLQKSISITSALLTEKDAELEKLRNEVTvlrgenASAKSLHSvvqtlesdkvkLELKVKNLEL 1141
Cdd:pfam05483 584 KKEKQMKILENKCN---NLKKQIENKNKNIEELHQENKALKKKGS------AENKQLNA-----------YEIKVNKLEL 643
|
650 660
....*....|....*....|....*....
gi 2217290444 1142 QLKENKRQLSSSSGNTDTQADEDERAQES 1170
Cdd:pfam05483 644 ELASAKQKFEEIIDNYQKEIEDKKISEEK 672
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
679-801 |
8.53e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 53.24 E-value: 8.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 679 KKLRQQLEAAEKQIKHL--EIEKNAESSKKEKFAEASEEA-----------VSVQRSMQETVNKLHQKEEQFNMLSSDLE 745
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRIleEAKKEAEAIKKEALLEAKEEIhklrnefekelRERRNELQKLEKRLLQKEENLDRKLELLE 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217290444 746 KLRENLADMEAKFREK----DEREEQLIKAKEKLENDIAEIMKMSGDNSSQ--LTKMNDELR 801
Cdd:PRK12704 107 KREEELEKKEKELEQKqqelEKKEEELEELIEEQLQELERISGLTAEEAKEilLEKVEEEAR 168
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
402-1104 |
8.96e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 53.29 E-value: 8.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 402 ELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLlqEISSLQEKLEVTR-------TDHQREITSLKEHFGAREEThQK 474
Cdd:pfam10174 40 ELKKERALRKEEAARISVLKEQYRVTQEENQHLQL--TIQALQDELRAQRdlnqllqQDFTTSPVDGEDKFSTPELT-EE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 475 EIKALYTATEKLSKENESLKSKLEHANKEnsdvIALWKSKLETAIASHQQAMEELKvsfSKGLGTETAEFAELKTQ---I 551
Cdd:pfam10174 117 NFRRLQSEHERQAKELFLLRKTLEEMELR----IETQKQTLGARDESIKKLLEMLQ---SKGLPKKSGEEDWERTRriaE 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 552 EKMRLDY------QHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQE 625
Cdd:pfam10174 190 AEMQLGHlevlldQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTED 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 626 AEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLL----DLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNA 701
Cdd:pfam10174 270 REEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLalqtKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDA 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 702 E-----------SSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLadmeakfREKDEREEQLIK 770
Cdd:pfam10174 350 LrlrleekesflNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQL-------RDKDKQLAGLKE 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 771 AKEKLENDiaeimkmSGDNSSQLTKMNDELRLKERDVEELQLkltkanenasflQKSIEDmTVKAEQSQQEAAKKHeeek 850
Cdd:pfam10174 423 RVKSLQTD-------SSNTDTALTTLEEALSEKERIIERLKE------------QRERED-RERLEELESLKKENK---- 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 851 kelerklsDLEKKMETSHNQCQElkaryeRATSETKTKheEILQNLQKTLLDTEDKLKGAREEnsgLLQELEELRKQADK 930
Cdd:pfam10174 479 --------DLKEKVSALQPELTE------KESSLIDLK--EHASSLASSGLKKDSKLKSLEIA---VEQKKEECSKLENQ 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 931 AKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENnLKNVEELNKSKElltvenQKMEEFRKEIETL 1010
Cdd:pfam10174 540 LKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGI-LREVENEKNDKD------KKIAELESLTLRQ 612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1011 KQAAAQKSQQLSALQ-EENVKLAEELGRSRDEvtshqKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLqksiSITSA 1089
Cdd:pfam10174 613 MKEQNKKVANIKHGQqEMKKKGAQLLEEARRR-----EDNLADNSQQLQLEELMGALEKTRQELDATKARL----SSTQQ 683
|
730
....*....|....*
gi 2217290444 1090 LLTEKDAELEKLRNE 1104
Cdd:pfam10174 684 SLAEKDGHLTNLRAE 698
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
676-909 |
1.08e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 676 SEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAvsvQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADME 755
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL---ERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 756 AKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR-----LKERdVEELQLKLTKANENASFLQKSIED 830
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKylapaRREQ-AEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217290444 831 MTvKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKG 909
Cdd:COG4942 176 LE-ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
775-1155 |
1.09e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 775 LENDIAEIMKMSG--------------DNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEdmtvKAEQSQQ 840
Cdd:TIGR02169 140 LQGDVTDFISMSPverrkiideiagvaEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE----KAERYQA 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 841 EAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQnLQKTLLDTEDKLKGAREENSGLLQE 920
Cdd:TIGR02169 216 LLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE-IEQLLEELNKKIKDLGEEEQLRVKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 921 -LEELrkQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKElltvenqK 999
Cdd:TIGR02169 295 kIGEL--EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-------E 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1000 MEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKReskfIKDADEEKAS 1079
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL---DRLQEELQRLSEELADLNAA----IAGIEAKINE 438
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217290444 1080 LQksisitsALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQLSSSSG 1155
Cdd:TIGR02169 439 LE-------EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
539-808 |
1.37e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.82 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 539 TETAEFAELKTQI------EKMRLDYQHEIENLQnQQDSERAAH-------AKEMEALRaKLMKVIKEKENSLEAIRSKL 605
Cdd:pfam17380 321 AEKARQAEMDRQAaiyaeqERMAMERERELERIR-QEERKRELErirqeeiAMEISRMR-ELERLQMERQQKNERVRQEL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 606 DKAEDQHLVEmEDTLNKLQEAEIKVKELEVLQAKCNE-QTKVIDnftsqlkatEEKLLDLDALRKASSEGKSEMKKLRQQ 684
Cdd:pfam17380 399 EAARKVKILE-EERQRKIQQQKVEMEQIRAEQEEARQrEVRRLE---------EERAREMERVRLEEQERQQQVERLRQQ 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 685 LEaaEKQIKHLEIEKnaessKKEKFAEASEEAVSV-QRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDE 763
Cdd:pfam17380 469 EE--ERKRKKLELEK-----EKRDRKRAEEQRRKIlEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEE 541
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2217290444 764 REEQlIKAKEKleNDIAEIMKMSGDNSSQLTKMNDELRLKERDVE 808
Cdd:pfam17380 542 RRKQ-QEMEER--RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
609-1147 |
3.82e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 51.62 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 609 EDQHLVEMEDTLNKLQEAeIKVKEL--EVLQAKCNEQT--KVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQ 684
Cdd:COG5022 737 EDMRDAKLDNIATRIQRA-IRGRYLrrRYLQALKRIKKiqVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSY 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 685 LEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVsvqrsmqETVNKLHQKEEQFNMLSSD--LEKLRENLADMEAKFREKD 762
Cdd:COG5022 816 LACIIKLQKTIKREKKLRETEEVEFSLKAEVLI-------QKFGRSLKAKKRFSLLKKEtiYLQSAQRVELAERQLQELK 888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 763 EREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKmndELRLKErdveELQLKLTKANENASF-LQKSIEDMTVKAEQSQQE 841
Cdd:COG5022 889 IDVKSISSLKLVNLELESEIIELKKSLSSDLIE---NLEFKT----ELIARLKKLLNNIDLeEGPSIEYVKLPELNKLHE 961
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 842 AAKKHEEEKKELERKLSDLEKKMETSHNQCQELKaryeratsetktKHEEILQNLQKTLLDTEDKLKGAREENSGL--LQ 919
Cdd:COG5022 962 VESKLKETSEEYEDLLKKSTILVREGNKANSELK------------NFKKELAELSKQYGALQESTKQLKELPVEVaeLQ 1029
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 920 ELEELRKQADKAKAAQTAEDamQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKenNLKNVEELNKSKELLTVENQK 999
Cdd:COG5022 1030 SASKIISSESTELSILKPLQ--KLKGLLLLENNQLQARYKALKLRRENSLLDDKQLY--QLESTENLLKTINVKDLEVTN 1105
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1000 MEEFRKEIETLKQAAAQKSQQLSALQEENVKLAeelgrsrdeVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKAS 1079
Cdd:COG5022 1106 RNLVKPANVLQFIVAQMIKLNLLQEISKFLSQL---------VNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAA 1176
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 1080 LQKSISITSALLTEKDaeleklrnevtvlrgenasaKSLHSVVQTLESDKVKLELKVKNLELQLKENK 1147
Cdd:COG5022 1177 LSEKRLYQSALYDEKS--------------------KLSSSEVNDLKNELIALFSKIFSGWPRGDKLK 1224
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
593-1026 |
5.41e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 5.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 593 EKENSLEAIRSKLDKAEDQHlVEMEDTLNKLQEAEikvKELE------------VLQAKcnEQTKVIDNFTSQLKATEEK 660
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRL-VEMARELEELSARE---SDLEqdyqaasdhlnlVQTAL--RQQEKIERYQEDLEELTER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 661 LLDLDALRKASSEGKSEmkkLRQQLEAAEKQIKHLeieknaesskKEKFAEAsEEAVSVQ--RSMQ--ETVNKLHQKEEQ 736
Cdd:COG3096 363 LEEQEEVVEEAAEQLAE---AEARLEAAEEEVDSL----------KSQLADY-QQALDVQqtRAIQyqQAVQALEKARAL 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 737 FNMlsSDLEKlrENLADMEAKFREK-DEREEQLIKAKEKLenDIAEIMKMSGDNSSQL-TKMNDElrlkerdVEELQlkl 814
Cdd:COG3096 429 CGL--PDLTP--ENAEDYLAAFRAKeQQATEEVLELEQKL--SVADAARRQFEKAYELvCKIAGE-------VERSQ--- 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 815 tkANENASFLQKSIEDMTVKAEQSQQEAAKKheeekkelerklSDLEKKMEtSHNQCQELKARYERATSETKTKHEEI-- 892
Cdd:COG3096 493 --AWQTARELLRRYRSQQALAQRLQQLRAQL------------AELEQRLR-QQQNAERLLEEFCQRIGQQLDAAEELee 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 893 -LQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ----ADKAKAAQTAEDAMQIMEQMTKEktetlaSLEDTKQTNAK 967
Cdd:COG3096 558 lLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARikelAARAPAWLAAQDALERLREQSGE------ALADSQEVTAA 631
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217290444 968 LQNELDTLKennlknveELNKSKELLtveNQKMEEFRKEIETLKQAAAQKSQQLSALQE 1026
Cdd:COG3096 632 MQQLLERER--------EATVERDEL---AARKQALESQIERLSQPGGAEDPRLLALAE 679
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
339-781 |
6.62e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 6.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQL-------RTMVEAADREKVELLNQLEEEKRKVEDLQFRVE--EESITKGDLEVATVSEKSRIMELEKDLAL 409
Cdd:COG4717 50 RLEKEADELfkpqgrkPELNLKELKELEEELKEAEEKEEEYAELQEELEelEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 410 RVQEVAELRRRLESNKPAgdVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKE 489
Cdd:COG4717 130 LYQELEALEAELAELPER--LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 490 NESLKSKLEHANKE----NSDVIALWKSKLETAIASHQQAMEELKVSFSK--GLGTETAEFAELKTQIEKMRLDYQHEIE 563
Cdd:COG4717 208 LAELEEELEEAQEEleelEEELEQLENELEAAALEERLKEARLLLLIAAAllALLGLGGSLLSLILTIAGVLFLVLGLLA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 564 NLQNQQDSERAAHAKEMEALRAkLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKcneq 643
Cdd:COG4717 288 LLFLLLAREKASLGKEAEELQA-LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE---- 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 644 tkvidnftSQLKATEEKLLDLDALRKASSEgksemKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSM 723
Cdd:COG4717 363 --------LQLEELEQEIAALLAEAGVEDE-----EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE 429
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 724 QETvnKLHQKEEQFNMLSSDLEKLRENLADMEAKFR--EKDEREEQLIKAKEKLENDIAE 781
Cdd:COG4717 430 LEE--ELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEELKAELRE 487
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
728-1198 |
7.19e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 50.51 E-value: 7.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 728 NKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDV 807
Cdd:pfam05557 16 NEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 808 EElqlKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeekkelerKLSDLEKKMETSHNQCQELKARYERAtsetkT 887
Cdd:pfam05557 96 ES---QLADAREVISCLKNELSELRRQIQRAEL---------------ELQSTNSELEELQERLDLLKAKASEA-----E 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 888 KHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQadKAKAAQTAEdamqiMEQMTKEKTETLASLEDTKQTNAK 967
Cdd:pfam05557 153 QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNS--KSELARIPE-----LEKELERLREHNKHLNENIENKLL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 968 LQNELDTLKeNNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQK-------SQQLSALQEENVKLAEELG---- 1036
Cdd:pfam05557 226 LKEEVEDLK-RKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlSRRIEQLQQREIVLKEENSslts 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1037 RSRDEVTSHQKLEEERSVLNNQLLEMKKReskfIKDADEEKASLQKSISITSallTEKDAELEKLRNEVTVLRGENASAK 1116
Cdd:pfam05557 305 SARQLEKARRELEQELAQYLKKIEDLNKK----LKRHKALVRRLQRRVLLLT---KERDGYRAILESYDKELTMSNYSPQ 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1117 SLHSVvqtLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDE----RAQESQID--FLNSVIVDLQRKNQDLK 1190
Cdd:pfam05557 378 LLERI---EEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERElqalRQQESLADpsYSKEEVDSLRRKLETLE 454
|
....*...
gi 2217290444 1191 MKVEMMSE 1198
Cdd:pfam05557 455 LERQRLRE 462
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
635-969 |
1.08e-05 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 50.22 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 635 VLQAKCNEQTKVIDNFTSQLKATEEKLLDldalrKASSEGKSEmkKLRQ----QLEAAEKQIKHLE------IEKNAESS 704
Cdd:NF012221 1535 VATSESSQQADAVSKHAKQDDAAQNALAD-----KERAEADRQ--RLEQekqqQLAAISGSQSQLEstdqnaLETNGQAQ 1607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 705 KkekfAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADmeakfREKDEREEQLIKAKEKLENDIAEImk 784
Cdd:NF012221 1608 R----DAILEESRAVTKELTTLAQGLDALDSQATYAGESGDQWRNPFAG-----GLLDRVQEQLDDAKKISGKQLADA-- 1676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 785 mSGDNSSQLTKMNDELRLKERDVEelqlkltKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKElerklsdlEKKM 864
Cdd:NF012221 1677 -KQRHVDNQQKVKDAVAKSEAGVA-------QGEQNQANAEQDIDDAKADAEKRKDDALAKQNEAQQA--------ESDA 1740
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 865 ETSHNQCQElkaRYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELrKQADKAKAAQTAEDAMQIM 944
Cdd:NF012221 1741 NAAANDAQS---RGEQDASAAENKANQAQADAKGAKQDESDKPNRQGAAGSGLSGKAYSV-EGVAEPGSHINPDSPAAAD 1816
|
330 340
....*....|....*....|....*.
gi 2217290444 945 EQMTKEKTE-TLASLEDTKQTNAKLQ 969
Cdd:NF012221 1817 GRFSEGLTEqEQEALEGATNAVNRLQ 1842
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
642-927 |
1.12e-05 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 49.77 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 642 EQTKVIDNFTSQLKATEEKLLDLD-ALRKASSEGK-SEMKKLRQQLEAAEKQIKHLEIE-----------KN-------A 701
Cdd:pfam18971 574 EANKLIKDFLSSNKELAGKALNFNkAVAEAKSTGNyDEVKKAQKDLEKSLRKREHLEKEvekklesksgnKNkmeakaqA 653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 702 ESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEqfnmLSSDLEKLRENLADMEAKFRE-KDEREEQLIKAKEKLENDIA 780
Cdd:pfam18971 654 NSQKDEIFALINKEANRDARAIAYTQNLKGIKRE----LSDKLEKISKDLKDFSKSFDEfKNGKNKDFSKAEETLKALKG 729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 781 EIMKMsGDNSSQLTK-------MNDELRLKERDveelqlkLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKEL 853
Cdd:pfam18971 730 SVKDL-GINPEWISKvenlnaaLNEFKNGKNKD-------FSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKA 801
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217290444 854 ERKLSDLEKKMETSHNQCQELKARYERATSETKT-KHEEILQNLQKTLLDT--EDKLKGAreENSGLLQELEELRKQ 927
Cdd:pfam18971 802 MGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTgKNSELYQSVKNSVNKTlvGNGLSGI--EATALAKNFSDIKKE 876
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
586-1190 |
1.64e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 586 KLMKVIKEKENSLEAIRSKL-DKAEDQHLVEMEDTLNKlQEAEIKVKELEVLQAKCNEQTKV--IDNFTSQLKATEEKLL 662
Cdd:pfam12128 183 KIAKAMHSKEGKFRDVKSMIvAILEDDGVVPPKSRLNR-QQVEHWIRDIQAIAGIMKIRPEFtkLQQEFNTLESAELRLS 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 663 DL------DALRKAS--SEGKSEMKKLRQQLEAAEKQIKHLEIEKNAE-SSKKEKFAEASEEAVSVQ----RSMQETVNK 729
Cdd:pfam12128 262 HLhfgyksDETLIASrqEERQETSAELNQLLRTLDDQWKEKRDELNGElSAADAAVAKDRSELEALEdqhgAFLDADIET 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 730 LHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLI-KAKEKLENDIAEIMK---------------MSGDNSSQL 793
Cdd:pfam12128 342 AAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRsKIKEQNNRDIAGIKDklakireardrqlavAEDDLQALE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 794 TKMNDELRLKERDVEELQLKLTKANENASF------------LQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLE 861
Cdd:pfam12128 422 SELREQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpellLQLENFDERIERAREEQEAANAEVERLQSELRQARKRR 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 862 KKMETSHNQC----QELKARYERATSETKTKHEEILQNLQKTLLDTED-------------------------------- 905
Cdd:pfam12128 502 DQASEALRQAsrrlEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvispellhrtdldpevwdgsvggelnly 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 906 --KLKGAREENSGLLQELEELRKQADKAKAA-QTAED-AMQIMEQMTKEKTET-LASLEDTKQTNAKLQNELDTLKENNL 980
Cdd:pfam12128 582 gvKLDLKRIDVPEWAASEEELRERLDKAEEAlQSAREkQAAAEEQLVQANGELeKASREETFARTALKNARLDLRRLFDE 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 981 KNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERsvLNNQLL 1060
Cdd:pfam12128 662 KQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLAL--LKAAIA 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1061 EMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQ-TLESDKVKLELKVKNL 1139
Cdd:pfam12128 740 ARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQeTWLQRRPRLATQLSNI 819
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217290444 1140 ELQLKENKRQLSSSSGNTDTQADEDER------AQESQIDFLNSVIVDLQRKNQDLK 1190
Cdd:pfam12128 820 ERAISELQQQLARLIADTKLRRAKLEMerkaseKQQVRLSENLRGLRCEMSKLATLK 876
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
537-787 |
1.75e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 537 LGTETAEFAELKTQIEKMRLDYQHEIENLQNQQdseraahaKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQhLVEM 616
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKEL--------AALKKEEKALLKQLAALERRIAALARRIRALEQE-LAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 617 EDTLNKLQeaeikvKELEVLQAKCNEQTKVIDNFTSQL-KATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHL 695
Cdd:COG4942 82 EAELAELE------KEIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 696 EIEKNAESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKL 775
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250
....*....|..
gi 2217290444 776 ENDIAEIMKMSG 787
Cdd:COG4942 236 AAAAAERTPAAG 247
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
977-1223 |
2.60e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 48.42 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 977 ENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAA----AQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEER 1052
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKlgenAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1053 SVLNNQLLEMKKrESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS---LHSVVQTLESDK 1129
Cdd:COG5185 312 ESLEEQLAAAEA-EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1130 VKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERaqesQIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNGNGDDL 1208
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQR----QIEQATSSNEEVSKLLNELiSELNKVMREADEESQSRLE 466
|
250
....*....|....*
gi 2217290444 1209 NNYDSDDQEKQSKKK 1223
Cdd:COG5185 467 EAYDEINRSVRSKKE 481
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
332-696 |
2.77e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 332 RTGLHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVA----TVSEKSRIME---LE 404
Cdd:PRK03918 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgrelTEEHRKELLEeytAE 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 405 -KDLALRVQEVAELRRRLESNKPagDVDMSLSLLQEISSLQEKLEvtrtdhqrEITSLKEHFgarEETHQKEIKALYTAT 483
Cdd:PRK03918 461 lKRIEKELKEIEEKERKLRKELR--ELEKVLKKESELIKLKELAE--------QLKELEEKL---KKYNLEELEKKAEEY 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 484 EKLSKENESLKSKLEHANKENSDVIALwKSKLETAIASHQQAMEELkvsfskglgtetaefAELKTQIEKMRLDyqhEIE 563
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLEEL-KKKLAELEKKLDELEEEL---------------AELLKELEELGFE---SVE 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 564 NLQNQQDSERAAHAKEMEALRAKlmKVIKEKENSLEAIRSKLDKAEDqhlvEMEDTLNKLQEAEIKVKELEVLQAKcNEQ 643
Cdd:PRK03918 589 ELEERLKELEPFYNEYLELKDAE--KELEREEKELKKLEEELDKAFE----ELAETEKRLEELRKELEELEKKYSE-EEY 661
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 2217290444 644 TKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLE 696
Cdd:PRK03918 662 EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
858-1037 |
3.20e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 858 SDLEKKMETSHNQCQELKARYERATSETKTKHEEI-------------LQNLQKTLLDTEDKLKGAREENSGLLQELEEL 924
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLaalerriaalarrIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 925 RKQ-ADKAKAAQT------------------AEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE 985
Cdd:COG4942 103 KEElAELLRALYRlgrqpplalllspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2217290444 986 LNKSKELLtveNQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1037
Cdd:COG4942 183 LEEERAAL---EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
924-1131 |
3.92e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 924 LRKQADKAKAAQTAEDAMQIMEQMTKE-KTETLASLEDTKQTNAKLQNELD---TLKENNLKNVEE--------LNKSKE 991
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAKRILEEAKKEaEAIKKEALLEAKEEIHKLRNEFEkelRERRNELQKLEKrllqkeenLDRKLE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 992 LLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEEL-GRSRDEVTshqkleeersvlnNQLLEMKKRESKfi 1070
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAK-------------EILLEKVEEEAR-- 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 1071 kdadEEKASLQKSIsitsalltEKDAELE--KLRNEVTVL---R--GENASAKSLhSVVqTLESDKVK 1131
Cdd:PRK12704 169 ----HEAAVLIKEI--------EEEAKEEadKKAKEILAQaiqRcaADHVAETTV-SVV-NLPNDEMK 222
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
749-1149 |
4.03e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 749 ENLADMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERDVEELQLKLTKANENASFLQKSI 828
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEEL---------------EELEAELEELREELEKLEKLLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 829 E-DMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKL 907
Cdd:COG4717 136 AlEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 908 KGAREENSGLLQELEELRKQADKAKAAQTAEDAMQI--------------------------------------MEQMTK 949
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallallglggsllsliltiagvlflvlgllallFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 950 EKTETLASLEDTKQ-------TNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQlS 1022
Cdd:COG4717 296 EKASLGKEAEELQAlpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-A 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1023 ALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEkaSLQKSISITSALLTEKDAELEKLR 1102
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELR 452
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2217290444 1103 NEVTVLRGEnasakslhsvVQTLESDK--VKLELKVKNLELQLKENKRQ 1149
Cdd:COG4717 453 EELAELEAE----------LEQLEEDGelAELLQELEELKAELRELAEE 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
336-1008 |
4.54e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 4.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 336 HVLELEAKMDQLRTMVEAADrEKVELLNQLEEEKRKVEDLQfrveeesitkgdlevatvseksRIMELEKDLALRVQEVA 415
Cdd:COG4913 216 YMLEEPDTFEAADALVEHFD-DLERAHEALEDAREQIELLE----------------------PIRELAERYAAARERLA 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 416 ELRRRLESNKPAGDVDMSLSLLQEISSLQEKLEvtrtDHQREITSLKehfgAREETHQKEIKALYTATEKLSKEN-ESLK 494
Cdd:COG4913 273 ELEYLRAALRLWFAQRRLELLEAELEELRAELA----RLEAELERLE----ARLDALREELDELEAQIRGNGGDRlEQLE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 495 SKLEHANKEnsdvialwKSKLETAIASHQQAMEELKVSfskgLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERA 574
Cdd:COG4913 345 REIERLERE--------LEERERRRARLEALLAALGLP----LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 575 AHAKEMEALRAklmkviKEKE-NSLEAIRSKLdkaeDQHLVEMEDTLNklQEAEIKVKEL----EVLQAKCNEQT----- 644
Cdd:COG4913 413 ALRDLRRELRE------LEAEiASLERRKSNI----PARLLALRDALA--EALGLDEAELpfvgELIEVRPEEERwrgai 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 645 -KVIDNFTSQLkateekLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESS-------KKEKFAE----- 711
Cdd:COG4913 481 eRVLGGFALTL------LVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSlagkldfKPHPFRAwleae 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 712 ----------ASEEAVS-VQRSM----------------------------QETVNKLHQKEEQFNMLSSDLEKLRENLA 752
Cdd:COG4913 555 lgrrfdyvcvDSPEELRrHPRAItragqvkgngtrhekddrrrirsryvlgFDNRAKLAALEAELAELEEELAEAEERLE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 753 DMEAKFREKDEREEQLIKAKEKLENDI------AEImkmsgdnsSQLTKMNDELRLKERDVEELQLKLTKANENASFLQK 826
Cdd:COG4913 635 ALEAELDALQERREALQRLAEYSWDEIdvasaeREI--------AELEAELERLDASSDDLAALEEQLEELEAELEELEE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 827 SIEDMTVKAEQsqqeaakkheeekkelerklsdLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEdk 906
Cdd:COG4913 707 ELDELKGEIGR----------------------LEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA-- 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 907 lkgAREEnsgLLQELEELRKQAdKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEEl 986
Cdd:COG4913 763 ---VERE---LRENLEERIDAL-RARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGLPEYEE- 834
|
730 740
....*....|....*....|...
gi 2217290444 987 nKSKELLTV-ENQKMEEFRKEIE 1008
Cdd:COG4913 835 -RFKELLNEnSIEFVADLLSKLR 856
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
554-1011 |
4.64e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 47.52 E-value: 4.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 554 MRLDYQHEIENLQNQQDSERAAHAKEmEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEdtlNKLQEAEIKVKEL 633
Cdd:PRK04778 23 LRKRNYKRIDELEERKQELENLPVND-ELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIE---EQLFEAEELNDKF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 634 EVLQAKcneqtKVIDNFTSQLKATEEkllDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLeieKNAESSKKEKFAEAS 713
Cdd:PRK04778 99 RFRKAK-----HEINEIESLLDLIEE---DIEQILEELQELLESEEKNREEVEQLKDLYREL---RKSLLANRFSFGPAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 714 EEavsvqrsMQETVNKLHQKEEQFNMLSSD---------LEKLRENLADMEAKFrekDEREEQLIKAKEKLENDIAEI-- 782
Cdd:PRK04778 168 DE-------LEKQLENLEEEFSQFVELTESgdyveareiLDQLEEELAALEQIM---EEIPELLKELQTELPDQLQELka 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 783 ----MKMSG------DNSSQLTKMNDELRLKERDVEELqlKLTKANENASFLQKSIEDM------TVKAEQsqqeaakkh 846
Cdd:PRK04778 238 gyreLVEEGyhldhlDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLydilerEVKARK--------- 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 847 eeekkelerklsDLEKKMETshnqcqeLKARYERATSETKTKHEEILQnLQKTLLDTEDKLKGAREensgLLQELEELRK 926
Cdd:PRK04778 307 ------------YVEKNSDT-------LPDFLEHAKEQNKELKEEIDR-VKQSYTLNESELESVRQ----LEKQLESLEK 362
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 927 QADKAKAAQTAEDAM--QIMEQMTkektETLASLEDTKQTNAKLQNELDTLKEnnlknvEELnkskelltVENQKMEEFR 1004
Cdd:PRK04778 363 QYDEITERIAEQEIAysELQEELE----EILKQLEEIEKEQEKLSEMLQGLRK------DEL--------EAREKLERYR 424
|
....*..
gi 2217290444 1005 KEIETLK 1011
Cdd:PRK04778 425 NKLHEIK 431
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
411-808 |
5.61e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.74 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 411 VQEVAELRRRLESNKP--AGDVDMSLSLLQEI---SSLQE---KLEVTRTDHQ-----REITSLKEHFGAREETHQKeik 477
Cdd:TIGR01612 1364 IDEVKEYTKEIEENNKniKDELDKSEKLIKKIkddINLEEcksKIESTLDDKDideciKKIKELKNHILSEESNIDT--- 1440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 478 alYTATEKLSKENESLKSK-LEHANKENSDVIalwKSKLETAIASHQQAMEELKVSFSKGLGTETaEFAELKTQIEKMRL 556
Cdd:TIGR01612 1441 --YFKNADENNENVLLLFKnIEMADNKSQHIL---KIKKDNATNDHDFNINELKEHIDKSKGCKD-EADKNAKAIEKNKE 1514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 557 DYQheienlQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRskldKAEDQHLVEMEDTLNKLQEAEIKVKELEVL 636
Cdd:TIGR01612 1515 LFE------QYKKDVTELLNKYSALAIKNKFAKTKKDSEIIIKEIK----DAHKKFILEAEKSEQKIKEIKKEKFRIEDD 1584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 637 QAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMkklrqqlEAAEKQIKHLEIEknaesSKKEKFAEASEEA 716
Cdd:TIGR01612 1585 AAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKET-------ESIEKKISSFSID-----SQDTELKENGDNL 1652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 717 VSVQ---RSMQETVNKLHQKEEQFNMLSSDLEKLrENLADMEAKFRE---KDEREEQLIKAKEKLENdIAEIMK------ 784
Cdd:TIGR01612 1653 NSLQeflESLKDQKKNIEDKKKELDELDSEIEKI-EIDVDQHKKNYEigiIEKIKEIAIANKEEIES-IKELIEptienl 1730
|
410 420
....*....|....*....|....
gi 2217290444 785 MSGDNSSQLTKMNDELRLKERDVE 808
Cdd:TIGR01612 1731 ISSFNTNDLEGIDPNEKLEEYNTE 1754
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
665-884 |
5.76e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 665 DALRKASSEGKSEMKKLRQQLEAAEKQIKHLEieknaessKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDL 744
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEFR--------QKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 745 EKLRENLADMEAKFRE--KDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR-LKERDVEELQLKLTKANENA 821
Cdd:COG3206 243 AALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAaLRAQLQQEAQRILASLEAEL 322
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217290444 822 SFLQKSIEDMtvkaeQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSE 884
Cdd:COG3206 323 EALQAREASL-----QAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
455-1223 |
6.09e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 6.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 455 QREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVialwKSKLETAIASHQQAMEELKVSFS 534
Cdd:TIGR00606 236 SREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSEL----ELKMEKVFQGTDEQLNDLYHNHQ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 535 KGLGTETAEFAELKTQIEKMRLDYQheiENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLV 614
Cdd:TIGR00606 312 RTVREKERELVDCQRELEKLNKERR---LLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 615 EME-DTLNKLQ------EAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKL-LDLDALRKASSEGKSEMKKLrQQLE 686
Cdd:TIGR00606 389 ERQiKNFHTLVierqedEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIeLKKEILEKKQEELKFVIKEL-QQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 687 AAEKQIkhleIEKNAESSKKEKFAEASEEAVSVQRSMQETVnklHQKEEQFNMlssdLEKLRENLADMEAKFREKDEREE 766
Cdd:TIGR00606 468 GSSDRI----LELDQELRKAERELSKAEKNSLTETLKKEVK---SLQNEKADL----DRKLRKLDQEMEQLNHHTTTRTQ 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 767 QLIKAKEKLENDiAEIMKMSGDNSSQLT-----------------KMNDELRLKERDVEELQLKLTKANENASFLQKSIE 829
Cdd:TIGR00606 537 MEMLTKDKMDKD-EQIRKIKSRHSDELTsllgyfpnkkqledwlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELE 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 830 DMTvkAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKAR---YERATSETKTKHE----------EILQNL 896
Cdd:TIGR00606 616 SKE--EQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGAtavYSQFITQLTDENQsccpvcqrvfQTEAEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 897 QKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAaqTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTlK 976
Cdd:TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG--LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE-Q 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 977 ENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLsalqeenvklaeelgRSRDEVTSHQKLEEERsvln 1056
Cdd:TIGR00606 771 ETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKL---------------QGSDLDRTVQQVNQEK---- 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1057 nqllemkkreskfiKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKV 1136
Cdd:TIGR00606 832 --------------QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1137 KNLELQLKENKRQLSSssgntDTQADEDERAQESQIdflnsvIVDLQRKNQDLKMKVEMMSEAALN--GNGDDLNNYDSD 1214
Cdd:TIGR00606 898 QSLIREIKDAKEQDSP-----LETFLEKDQQEKEEL------ISSKETSNKKAQDKVNDIKEKVKNihGYMKDIENKIQD 966
|
....*....
gi 2217290444 1215 DQEKQSKKK 1223
Cdd:TIGR00606 967 GKDDYLKQK 975
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
740-1097 |
7.69e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 7.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 740 LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANE 819
Cdd:pfam02463 147 IAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 820 NASFLQKSIEdmtvKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQcQELKARYERATSETKTKHEEILQNLQKT 899
Cdd:pfam02463 227 LYLDYLKLNE----ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKE-NKEEEKEKKLQEEELKLLAKEEEELKSE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 900 LLDTEDKLKGAREENSGLLQELEELRKQADKAKaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENN 979
Cdd:pfam02463 302 LLKLERRKVDDEEKLKESEKEKKKAEKELKKEK--EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 980 LKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQL 1059
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
330 340 350
....*....|....*....|....*....|....*...
gi 2217290444 1060 LEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAE 1097
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
676-805 |
9.59e-05 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 47.00 E-value: 9.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 676 SEMKKLRQQLEAaekqikhLEIEKNAesSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADME 755
Cdd:COG0542 411 EELDELERRLEQ-------LEIEKEA--LKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELE 481
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217290444 756 AKFREKDEREEQLIKAKEKL------------ENDIAEIM---------KMSGDNSSQLTKMNDElrLKER 805
Cdd:COG0542 482 QRYGKIPELEKELAELEEELaelapllreevtEEDIAEVVsrwtgipvgKLLEGEREKLLNLEEE--LHER 550
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1225-1242 |
1.12e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.12e-04
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
622-840 |
1.43e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 622 KLQEAEIKVKELEVLQAKCNEQtkvIDNFTSQLKATEEKLLDLDALRKASsegKSEMKKLRQQLEAAEKQIKHL--EIEK 699
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAE---LDALQAELEELNEEYNELQAELEAL---QAEIDKLQAEIAEAEAEIEERreELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 700 NAESSKKEKFAEASEEAVSVQRSMQETVNKLH-------QKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAK 772
Cdd:COG3883 91 RARALYRSGGSVSYLDVLLGSESFSDFLDRLSalskiadADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 773 EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQ 840
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
563-818 |
1.61e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.05 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 563 ENLQNQQDSERAAHAKEMEALRAKLMKVIKEKEN-SLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCN 641
Cdd:PLN02939 94 DDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDfQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKIN 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 642 eqtkvidnftsqlkATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKH-LEIEKNAESSKKEKFAEASEEAVSVQ 720
Cdd:PLN02939 174 --------------ILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIrGATEGLCVHSLSKELDVLKEENMLLK 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 721 RSMQ---ETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAK-----EKLEN--DIAEIMKMSGDNS 790
Cdd:PLN02939 240 DDIQflkAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQydcwwEKVENlqDLLDRATNQVEKA 319
|
250 260
....*....|....*....|....*...
gi 2217290444 791 SQLTKMNDELRLKerdVEELQLKLTKAN 818
Cdd:PLN02939 320 ALVLDQNQDLRDK---VDKLEASLKEAN 344
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
888-1078 |
1.66e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 888 KHEEILQNLQKtLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQImEQMTKEKTETLASLEDTKQtnaK 967
Cdd:PRK05771 44 RLRKLRSLLTK-LSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKI-EKEIKELEEEISELENEIK---E 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 968 LQNELDTLK-----------------------------------ENNLKNVEELNKSKE----LLTVENQKMEEFRKEIE 1008
Cdd:PRK05771 119 LEQEIERLEpwgnfdldlslllgfkyvsvfvgtvpedkleelklESDVENVEYISTDKGyvyvVVVVLKELSDEVEEELK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1009 -------------TLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshQKLEEERSVLNNQLLEMKKRESKFIKDADE 1075
Cdd:PRK05771 199 klgferleleeegTPSELIREIKEELEEIEKERESLLEELKELA------KKYLEELLALYEYLEIELERAEALSKFLKT 272
|
...
gi 2217290444 1076 EKA 1078
Cdd:PRK05771 273 DKT 275
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
673-1032 |
1.75e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 673 EGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAvsvQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLA 752
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYY---QLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 753 DMEAKFREKDEREEQLIKAKEKLE-NDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEdm 831
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVlKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK-- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 832 tvKAEQSQQEAAKKHEEEKKElerkLSDLEKKMETSHNQCQELKARYERAtsetktkhEEILQNLQKTL-LDTEDKLKGA 910
Cdd:pfam02463 325 --KAEKELKKEKEEIEELEKE----LKELEIKREAEEEEEEELEKLQEKL--------EQLEEELLAKKkLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 911 REENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQ--NELDTLKENNLKNVEELNK 988
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkeELEKQELKLLKDELELKKS 470
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2217290444 989 SKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLA 1032
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLA 514
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
395-956 |
1.87e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.90 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 395 SEKSRIMELEKDLALRVQEVAELRRRLE---SNKPAGDVDMSLSLLQEISSLQEKLEVTRTdhqreiTSLKEHFgaREET 471
Cdd:pfam07111 27 TQRPTVTMWEQDVSGDGQGPGRRGRSLElegSQALSQQAELISRQLQELRRLEEEVRLLRE------TSLQQKM--RLEA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 472 HQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQI 551
Cdd:pfam07111 99 QAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 552 EKMRLDYQHEIENL---QNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAE-DQHLVEMEDTLNKLQEAE 627
Cdd:pfam07111 179 NSLETKRAGEAKQLaeaQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTwELERQELLDTMQHLQEDR 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 628 IKVKE-LEVLQAKCNEQTKVIdnfTSQLKATEEKLLDLDALR-KASSEGKSEMKKLRQQLEAAEKQIKHLEIE------- 698
Cdd:pfam07111 259 ADLQAtVELLQVRVQSLTHML---ALQEEELTRKIQPSDSLEpEFPKKCRSLLNRWREKVFALMVQLKAQDLEhrdsvkq 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 699 -KNAESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEN 777
Cdd:pfam07111 336 lRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQI 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 778 DIAEIMKMSGDNSSQLTKMNDELRLKERDVE------------------------------------------------- 808
Cdd:pfam07111 416 WLETTMTRVEQAVARIPSLSNRLSYAVRKVHtikglmarkvalaqlrqescpppppappvdadlsleleqlreernrlda 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 809 ELQL-------KLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERA 881
Cdd:pfam07111 496 ELQLsahliqqEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIY 575
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217290444 882 TSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKaaQTAEDAMQIMEQMTKEKTETLA 956
Cdd:pfam07111 576 GQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEK--ERNQELRRLQDEARKEEGQRLA 648
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
956-1203 |
1.93e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 956 ASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLaeel 1035
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL---- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1036 grsrdevtsHQKLEEERSVLNNQLLEMKKRES----KFIKDADEEKASLqKSISITSALLTEKDAELEKLRNEVTVLRge 1111
Cdd:COG4942 96 ---------RAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAV-RRLQYLKYLAPARREQAEELRADLAELA-- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1112 nASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQIDfLNSVIVDLQRKNQDLKM 1191
Cdd:COG4942 164 -ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE-LEALIARLEAEAAAAAE 241
|
250
....*....|..
gi 2217290444 1192 KVEMMSEAALNG 1203
Cdd:COG4942 242 RTPAAGFAALKG 253
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
910-1175 |
3.17e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 910 AREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKS 989
Cdd:PRK11281 27 ARAASNGDLPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 990 KElltvENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSrdeVTSHQKLEEERSVLNNQLLEMKKRESKF 1069
Cdd:PRK11281 107 KD----DNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL---VSLQTQPERAQAALYANSQRLQQIRNLL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1070 IKDADEEKA---SLQKSISITSALLtekDAELEKLRNEvtvLRGenasakslHSVVQTLESDKVKL-ELKVKNLELQLKE 1145
Cdd:PRK11281 180 KGGKVGGKAlrpSQRVLLQAEQALL---NAQNDLQRKS---LEG--------NTQLQDLLQKQRDYlTARIQRLEHQLQL 245
|
250 260 270
....*....|....*....|....*....|....*
gi 2217290444 1146 -----NKRQLSSSSgNTDTQADEDERAQESQIDFL 1175
Cdd:PRK11281 246 lqeaiNSKRLTLSE-KTVQEAQSQDEAARIQANPL 279
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
858-1044 |
3.35e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 858 SDLEKKMETSHNQCQELKARYERATSETKTKHEEIlQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADK-AKAAQT 936
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEY-NELQAELEALQAEIDKLQAEIAEAEAEIEERREELGErARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 937 AE-------------------DAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLtveN 997
Cdd:COG3883 98 SGgsvsyldvllgsesfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---E 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2217290444 998 QKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTS 1044
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
665-1200 |
3.55e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.10 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 665 DALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRsmqETVNKLHQKEEQFNMlssdl 744
Cdd:pfam05483 63 EGLKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQR---KAIQELQFENEKVSL----- 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 745 eKLRENLADMEAKFREKDereeqlikAKEKLENDIAEIMKMSGDNSSQLtkmndelrlkERDVEELQLKLTKANENASFL 824
Cdd:pfam05483 135 -KLEEEIQENKDLIKENN--------ATRHLCNLLKETCARSAEKTKKY----------EYEREETRQVYMDLNNNIEKM 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 825 QKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQ-------ELKARYERATSETKTKHEEILQNLQ 897
Cdd:pfam05483 196 ILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSllliqitEKENKMKDLTFLLEESRDKANQLEE 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 898 KTLLDTEDkLKGAREENSGLLQELEELRKQADKAKAAQTA-EDAMQI----MEQMTKEKTETLASLEDTKQTNAKLQNEL 972
Cdd:pfam05483 276 KTKLQDEN-LKELIEKKDHLTKELEDIKMSLQRSMSTQKAlEEDLQIatktICQLTEEKEAQMEELNKAKAAHSFVVTEF 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 973 DTlkennlknveELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEER 1052
Cdd:pfam05483 355 EA----------TTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEK 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1053 SVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKL 1132
Cdd:pfam05483 425 KQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKEL 504
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217290444 1133 ELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQI---DFLNSVIVDLQRKNQDLKMKVEMMSEAA 1200
Cdd:pfam05483 505 TQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMnlrDELESVREEFIQKGDEVKCKLDKSEENA 575
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
542-1010 |
4.79e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.35 E-value: 4.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 542 AEFAELKTQIEKMRLDY-QHEIENLQNQQDSERAAHA---------KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEdQ 611
Cdd:pfam05557 2 AELIESKARLSQLQNEKkQMELEHKRARIELEKKASAlkrqldresDRNQELQKRIRLLEKREAEAEEALREQAELNR-L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 612 HLVEMEDTLNKLQEAEIKVKELE----VLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEA 687
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADARevisCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 688 -------AEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRsMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFRE 760
Cdd:pfam05557 161 qqsslaeAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPE-LEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLER 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 761 KDEREEQLIK---AKEKLE--------------------------------NDIAEIMKMSGDNSS------QLTKMNDE 799
Cdd:pfam05557 240 EEKYREEAATlelEKEKLEqelqswvklaqdtglnlrspedlsrrieqlqqREIVLKEENSSLTSSarqlekARRELEQE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 800 LRLKERDVEELQLKLTKANENASFLQK-----------------SIEDMTVKAEQSQQEAAKKHE---------EEKKEL 853
Cdd:pfam05557 320 LAQYLKKIEDLNKKLKRHKALVRRLQRrvllltkerdgyraileSYDKELTMSNYSPQLLERIEEaedmtqkmqAHNEEM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 854 ERKLSDLEKKMETSHNQCQ----ELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQAD 929
Cdd:pfam05557 400 EAQLSVAEEELGGYKQQAQtlerELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQGD 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 930 ----KAKAAQTAEDAMQIMEQMTKEKTETL-ASLEDTKQTNAKLQNELD-------TLKENNLKNVEELNKSKELLTVEN 997
Cdd:pfam05557 480 ydpkKTKVLHLSMNPAAEAYQQRKNQLEKLqAEIERLKRLLKKLEDDLEqvlrlpeTTSTMNFKEVLDLRKELESAELKN 559
|
570 580
....*....|....*....|.
gi 2217290444 998 QKM--------EEFRKEIETL 1010
Cdd:pfam05557 560 QRLkevfqakiQEFRDVCYML 580
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
579-899 |
4.84e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 579 EMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDtlNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATE 658
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKE--EKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 659 EKLLDLDALRKasSEGKSEMKKLRQQLEAAE-KQIKHLEIEKNAESSKKEKFAEASEEAVSV-------QRSMQETVNKL 730
Cdd:pfam17380 345 ERERELERIRQ--EERKRELERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAARKVkileeerQRKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 731 HQ-KEEQFNMLSSDLEKLRENLA-DMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVE 808
Cdd:pfam17380 423 EQiRAEQEEARQREVRRLEEERArEMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 809 ELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKkelerklsdlEKKMETSHN-QCQELKARYERATSETKT 887
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRK----------QQEMEERRRiQEQMRKATEERSRLEAME 572
|
330
....*....|..
gi 2217290444 888 KHEEILQNLQKT 899
Cdd:pfam17380 573 REREMMRQIVES 584
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
614-779 |
5.08e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 44.25 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 614 VEMEDTLNKLQEAEIKV--KELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQ 691
Cdd:pfam05667 323 VETEEELQQQREEELEElqEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLPDAEEN 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 692 IKHLEIEKNAESSKKEKFAEASEEA----VSVQRSMQEtvnKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQ 767
Cdd:pfam05667 403 IAKLQALVDASAQRLVELAGQWEKHrvplIEEYRALKE---AKSNKEDESQRKLEEIKELREKIKEVAEEAKQKEELYKQ 479
|
170
....*....|..
gi 2217290444 768 LIKAKEKLENDI 779
Cdd:pfam05667 480 LVAEYERLPKDV 491
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
361-767 |
5.74e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 44.27 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 361 LLNQLEEEKRKVED-LQFrVEEesITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRrrlesnkpagdvdmslsllQE 439
Cdd:PTZ00108 1000 LLGKLERELARLSNkVRF-IKH--VINGELVITNAKKKDLVKELKKLGYVRFKDIIKKK-------------------SE 1057
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 440 ISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKL-EHANKENSDVIALWKS---KL 515
Cdd:PTZ00108 1058 KITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEkELEKLKNTTPKDMWLEdldKF 1137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 516 ETAIASHQQAMEELKVSFSKglgtetaefaelKTQIEKMRLDyqheieNLQNQQDSERAAHAKEMEALRAKLMKVIKEKE 595
Cdd:PTZ00108 1138 EEALEEQEEVEEKEIAKEQR------------LKSKTKGKAS------KLRKPKLKKKEKKKKKSSADKSKKASVVGNSK 1199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 596 NSLEAIRSKLDKAEDQHLVE------MEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLD----LD 665
Cdd:PTZ00108 1200 RVDSDEKRKLDDKPDNKKSNssgsdqEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNapkrVS 1279
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 666 ALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQF---NMLSS 742
Cdd:PTZ00108 1280 AVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRllrRPRKK 1359
|
410 420
....*....|....*....|....*
gi 2217290444 743 DLEKLRENLADMEAKFREKDEREEQ 767
Cdd:PTZ00108 1360 KSDSSSEDDDDSEVDDSEDEDDEDD 1384
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
678-1157 |
6.32e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 6.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 678 MKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLA---DM 754
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSkimKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 755 EAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMND-ELRLKERDVEELQLKLTKANENASFLQKS------ 827
Cdd:TIGR00606 268 DNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQrTVREKERELVDCQRELEKLNKERRLLNQEktellv 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 828 -IEDMTVKAEQSQQEAAKKHEEEKKELERKL-------SDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKT 899
Cdd:TIGR00606 348 eQGRLQLQADRHQEHIRARDSLIQSLATRLEldgfergPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 900 LLDTEDKLKGARE----ENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELdTL 975
Cdd:TIGR00606 428 ADEIRDEKKGLGRtielKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK-SL 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 976 KENNLKNVEELNKskelltvENQKMEEFRKEIETLKQAAAQKSQQLSALQeenvKLAEELGRSRDEVTSHQKLEEERSVL 1055
Cdd:TIGR00606 507 QNEKADLDRKLRK-------LDQEMEQLNHHTTTRTQMEMLTKDKMDKDE----QIRKIKSRHSDELTSLLGYFPNKKQL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1056 NNQLlemkKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSvvqtlesdkvkLELK 1135
Cdd:TIGR00606 576 EDWL----HSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQD-----------EESD 640
|
490 500
....*....|....*....|..
gi 2217290444 1136 VKNLELQLKENKRQLSSSSGNT 1157
Cdd:TIGR00606 641 LERLKEEIEKSSKQRAMLAGAT 662
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
966-1111 |
8.04e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 8.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 966 AKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRD--EVT 1043
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217290444 1044 SHQK----LEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGE 1111
Cdd:COG1579 93 ALQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
659-1137 |
8.45e-04 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 44.05 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 659 EKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEK---FAEASEEAVSVQRSMQETVNKLHQKEE 735
Cdd:PTZ00440 450 EKINELKKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKvdeLLQIINSIKEKNNIVNNNFKNIEDYYI 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 736 QFNMLSSDLEKLRENLADMEAKFREKDEREeqliKAKEKLENDIAEIMKMSGDNSSQLTKM---NDELRLKERDVEELqL 812
Cdd:PTZ00440 530 TIEGLKNEIEGLIELIKYYLQSIETLIKDE----KLKRSMKNDIKNKIKYIEENVDHIKDIislNDEIDNIIQQIEEL-I 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 813 KLTKANENASFLQKSIEDMTVKaeqsqqeaakkheeeKKELERKLSDLEKKMETSHNQCQELKARYERATSETKtkheei 892
Cdd:PTZ00440 605 NEALFNKEKFINEKNDLQEKVK---------------YILNKFYKGDLQELLDELSHFLDDHKYLYHEAKSKED------ 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 893 LQNLQKTLLDTEDKLKGAREEN--------SGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQT 964
Cdd:PTZ00440 664 LQTLLNTSKNEYEKLEFMKSDNidniiknlKKELQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEE 743
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 965 NAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTS 1044
Cdd:PTZ00440 744 EEKLEVYKHQIINRKNEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQK 823
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1045 HQKLEEERSVLNNQLLEMKKRESKFIKDADEEKaSLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQT 1124
Cdd:PTZ00440 824 LEAHTEKNDEELKQLLQKFPTEDENLNLKELEK-EFNENNQIVDNIIKDIENMNKNINIIKTLNIAINRSNSNKQLVEHL 902
|
490
....*....|...
gi 2217290444 1125 LESdkvKLELKVK 1137
Cdd:PTZ00440 903 LNN---KIDLKNK 912
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
859-1021 |
8.82e-04 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 43.40 E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 859 DLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGllQELEELRKQAdKAKAAQTAE 938
Cdd:COG4487 37 ERLADAAKREAALELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKKALAVAEEKE--KELAALQEAL-AEKDAKLAE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 939 DAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEN-NLKNVEELNKSKELLTVENQK-MEEFRKEIETLKQAAAQ 1016
Cdd:COG4487 114 LQAKELELLKKERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQ 193
|
....*
gi 2217290444 1017 KSQQL 1021
Cdd:COG4487 194 GSTQL 198
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
344-688 |
1.01e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 344 MDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVE----EESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRR 419
Cdd:PRK01156 351 LNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIErmsaFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQ 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 420 RLESNKpagDVDMSLSLLQEISSLQEKLEVTRTDHQRE-ITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLE 498
Cdd:PRK01156 431 RIRALR---ENLDELSRNMEMLNGQSVCPVCGTTLGEEkSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKE 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 499 HANKENSDVIALWKSKLETAIAShqqaMEELKVSFSKgLGTETAEFAELKTQIEKMRLdyqheiENLQNQQDSERAAHAK 578
Cdd:PRK01156 508 YLESEEINKSINEYNKIESARAD----LEDIKIKINE-LKDKHDKYEEIKNRYKSLKL------EDLDSKRTSWLNALAV 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 579 ----EMEALRAK---LMKVIKEKENSLEAIRSKLDKAE---DQHLVEMEDTLNKLQEaeiKVKELEVLQAKCNEQTKVID 648
Cdd:PRK01156 577 isliDIETNRSRsneIKKQLNDLESRLQEIEIGFPDDKsyiDKSIREIENEANNLNN---KYNEIQENKILIEKLRGKID 653
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2217290444 649 NFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAA 688
Cdd:PRK01156 654 NYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDA 693
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
706-814 |
1.11e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 706 KEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDER----EEQLIKAKEKLENDI-- 779
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEARSEERREIrk 463
|
90 100 110
....*....|....*....|....*....|....*.
gi 2217290444 780 -AEIMKMSGDNsSQLTKmndELRLKERDVEELQLKL 814
Cdd:COG2433 464 dREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
820-1199 |
1.13e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 820 NASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKT 899
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 900 LLDTEDKLKGAREENSGLLQE----LEELRK--QADKAKAAQTAEDAMQIMEQMTKE---KTETLASLEDTKQTNAKLQN 970
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEdakkAEAARKaeEVRKAEELRKAEDARKAEAARKAEeerKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 971 ELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQE----------ENVKLAEELGRSRD 1040
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkadeakkaEEKKKADEAKKKAE 1312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1041 EVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSAllTEKDAELEKLRNEVTVLRGENASAKSlHS 1120
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKKKADAAKKKA-EE 1389
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217290444 1121 VVQTLESDKVKLELKVKNLELQLKENKRQlssSSGNTDTQADEDERAQESQIDflnsviVDLQRKNQDLKMKVEMMSEA 1199
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKK---KADEAKKKAEEKKKADEAKKK------AEEAKKADEAKKKAEEAKKA 1459
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
918-1125 |
1.18e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 918 LQELEELRKQADKAKAAQTAedamqiMEQMTKEKTETLASLEDTKQTNAKLQNELDTLK--ENNLKNVEELNKSKELLTV 995
Cdd:COG4717 70 LKELKELEEELKEAEEKEEE------YAELQEELEELEEELEELEAELEELREELEKLEklLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 996 ENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELgrsrdEVTSHQKLEEersvlnnqllemkkreskfIKDADE 1075
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELL-----EQLSLATEEE-------------------LQDLAE 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1076 EKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTL 1125
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
349-725 |
1.25e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 43.30 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 349 TMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSeKSRIMELEkdlalrvQEVAELRRRLESNKPAG 428
Cdd:PLN03229 381 NMDELGKMDTEELLKHRMLKFRKIGGFQEGVPVDPERKVNMKKREAV-KTPVRELE-------GEVEKLKEQILKAKESS 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 429 DVDMSLSLLQEISSLQEKLEVTRTDH------QREITSLKEHFGAREETHQKEIKALYTATEKLSKE----------NES 492
Cdd:PLN03229 453 SKPSELALNEMIEKLKKEIDLEYTEAviamglQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEfnkrlsrapnYLS 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 493 LKSKLEHANKensdvIALWKSKLEtaiasHQQAMEELKVSFSKGLgTETAEFAELKtqiEKMrldyqheiENLQNQQDSE 572
Cdd:PLN03229 533 LKYKLDMLNE-----FSRAKALSE-----KKSKAEKLKAEINKKF-KEVMDRPEIK---EKM--------EALKAEVASS 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 573 RAAHAKEM-EALRAKLMKVIKEKENSLEAIRSKLDKAedqhlVEMEDTLNKLQEAEIKVKELEVLQAKCNEQT-KVIDNF 650
Cdd:PLN03229 591 GASSGDELdDDLKEKVEKMKKEIELELAGVLKSMGLE-----VIGVTKKNKDTAEQTPPPNLQEKIESLNEEInKKIERV 665
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217290444 651 --TSQLKATEEkLLDLDALRKASSEGKSEMKKLrqqlEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSMQE 725
Cdd:PLN03229 666 irSSDLKSKIE-LLKLEVAKASKTPDVTEKEKI----EALEQQIKQKIAEALNSSELKEKFEELEAELAAARETAAE 737
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
339-463 |
1.25e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatvSEKSRIMELEKDLALRVQEVAELR 418
Cdd:COG2433 410 EEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEAR-----------SEERREIRKDREISRLDREIERLE 478
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2217290444 419 RRLEsnkpagdvdmslSLLQEISSLQEKLEVTRT----DHQREITSLKE 463
Cdd:COG2433 479 RELE------------EERERIEELKRKLERLKElwklEHSGELVPVKV 515
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
339-734 |
1.28e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 339 ELEAKMDQLRTMVEAADREKV-----ELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQE 413
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 414 VAELRRRLES--NKPAGDVDMSLSLLQEISSLQEKLEvtrtdHQREITSLKehfgareethQKEIKALYTATEKLSKENE 491
Cdd:TIGR04523 365 LEEKQNEIEKlkKENQSYKQEIKNLESQINDLESKIQ-----NQEKLNQQK----------DEQIKKLQQEKELLEKEIE 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 492 SLKSKLEHANKENSDVIALwKSKLETAIASHQQAMEELKvsfsKGLGTETAEFAELKTQIEKMrldyQHEIENlQNQQDS 571
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLE----TQLKVLSRSINKIKQNLEQK----QKELKS-KEKELK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 572 ERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQhLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFT 651
Cdd:TIGR04523 500 KLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESK-ISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQK 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 652 SQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSMQETVNKLH 731
Cdd:TIGR04523 579 SLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
...
gi 2217290444 732 QKE 734
Cdd:TIGR04523 659 NKW 661
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
724-935 |
1.45e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 724 QETVNKL------HQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLikakeKLENDIAEIMKMSGDNSSQLTKMN 797
Cdd:COG3206 151 AAVANALaeayleQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF-----RQKNGLVDLSEEAKLLLQQLSELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 798 DELRlkerdveELQLKLTKANENASFLQKSIE-DMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKA 876
Cdd:COG3206 226 SQLA-------EARAELAEAEARLAALRAQLGsGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRA 298
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217290444 877 RYERATsetktkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQ 935
Cdd:COG3206 299 QIAALR-------AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
598-695 |
2.00e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 41.98 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 598 LEAIRSKLDK-AEDQHLVEMEDTLNKLQEAEIKVKEL----EVLQAKCNEQTKVIdnftSQLKATEEkllDLDALRKASS 672
Cdd:PRK05431 4 IKLIRENPEAvKEALAKRGFPLDVDELLELDEERRELqtelEELQAERNALSKEI----GQAKRKGE---DAEALIAEVK 76
|
90 100
....*....|....*....|...
gi 2217290444 673 EGKSEMKKLRQQLEAAEKQIKHL 695
Cdd:PRK05431 77 ELKEEIKALEAELDELEAELEEL 99
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
986-1189 |
2.14e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 986 LNKSKELLTVENQKMEEF-RKEIETLKQAAAQKSQQLSALQEEN--VKLAEELGRSRDEVTShqkLEEERSVLNNQLLEM 1062
Cdd:COG3206 162 LEQNLELRREEARKALEFlEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSE---LESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1063 KKRESKFIKDADEEKASLqkSISITSALLTEKDAELEKLRNEVTVLRgenASAKSLHSVVQTLESdkvklelKVKNLELQ 1142
Cdd:COG3206 239 EARLAALRAQLGSGPDAL--PELLQSPVIQQLRAQLAELEAELAELS---ARYTPNHPDVIALRA-------QIAALRAQ 306
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2217290444 1143 LKENKRQLSSSSGNTDTQADEDERAQESQIDFLNSVIVDLQRKNQDL 1189
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
741-1015 |
2.35e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 741 SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANEN 820
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 821 ASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEkkmetshnqcqelkaryeratsetktkheeILQNLQKTL 900
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ------------------------------YLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 901 LDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEdamqimeqmtkektetLASLEDTKQTNAKLQNELDTLKENNL 980
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEE----------------RAALEALKAERQKLLARLEKELAELA 212
|
250 260 270
....*....|....*....|....*....|....*
gi 2217290444 981 KNVEELNKSKELLTVENQKMEEFRKEIETLKQAAA 1015
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
397-628 |
2.42e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 397 KSRIMELEKDLALRVQEVAELRRRLESNKPAGDVDMslsLLQEISSLQEKLEVTRTDHQreitslkehfgareethqkEI 476
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEARAELA-------------------EA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 477 KALYTATEKLSKENESLKSKLEhankeNSDVIAlwksKLETAIASHQQAMEELkvsfSKGLGTETAEFAELKTQIEKMRL 556
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELL-----QSPVIQ----QLRAQLAELEAELAEL----SARYTPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 557 DYQHEIENLQNQQDSERAAHAKEMEALRAKL------MKVIKEKENSLEAIRSKLDKAEDQHlvemEDTLNKLQEAEI 628
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY----ESLLQRLEEARL 379
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
683-809 |
2.49e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 683 QQLEAAEKQIKHLEIEKNAesSKKEKfAEASEEavsvqrsmqetvnKLHQKEEQfnmlssdLEKLRENLADMEAKFREKD 762
Cdd:COG0542 411 EELDELERRLEQLEIEKEA--LKKEQ-DEASFE-------------RLAELRDE-------LAELEEELEALKARWEAEK 467
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2217290444 763 EREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEE 809
Cdd:COG0542 468 ELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVTE 514
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
570-781 |
2.54e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 570 DSERAAHAKEMEALRAKLMKVIKEkensLEAIRSKLDKAEDqhlvEMEDTLNKLQEAEIKV----KELEVLQAKCNEQTK 645
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAE----LDALQAELEELNE----EYNELQAELEALQAEIdklqAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 646 VIDNFTSQLKATEEKLLDLDALRKASSEGK--SEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSM 723
Cdd:COG3883 87 ELGERARALYRSGGSVSYLDVLLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217290444 724 QETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAE 781
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
890-1061 |
2.75e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 890 EEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAkaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNAkLQ 969
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL------ELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 970 NELDTLKennlKNVEELNksKELLTVENQKmEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTshQKLE 1049
Cdd:COG1579 96 KEIESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE--AERE 166
|
170
....*....|..
gi 2217290444 1050 EERSVLNNQLLE 1061
Cdd:COG1579 167 ELAAKIPPELLA 178
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
474-1054 |
3.13e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.87 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 474 KEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIAShqqaMEELKVSFSKGLGTETAEFAELKTQIEK 553
Cdd:COG5185 8 LQVKNPLAKEGNANKELIEILLESSKSEGKTLVFITILFFPLGISRDS----LRVTLRSVINVLDGLNYQNDVKKSESSV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 554 MRLDYQHEIENLQ--NQQDSERAAHAKEMEALRAKLMKVIKEKENslEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVK 631
Cdd:COG5185 84 KARKFLKEKKLDTkiLQEYVNSLIKLPNYEWSADILISLLYLYKS--EIVALKDELIKVEKLDEIADIEASYGEVETGII 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 632 ELevLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEmkkLRQQLEAAEKQIKHLEIEKNAESSKKEKFAE 711
Cdd:COG5185 162 KD--IFGKLTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVN---SIKESETGNLGSESTLLEKAKEIINIEEALK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 712 ASEEAVSVQRSMQETVNKLHQKEEQFNMLSsdLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEI-MKMSGDNS 790
Cdd:COG5185 237 GFQDPESELEDLAQTSDKLEKLVEQNTDLR--LEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIdIKKATESL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 791 SQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIED--MTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSH 868
Cdd:COG5185 315 EEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTEnlEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKESLD 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 869 NQCQELKARY---ERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIME 945
Cdd:COG5185 395 EIPQNQRGYAqeiLATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINR 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 946 QMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVE----ELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQL 1021
Cdd:COG5185 475 SVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEgvrsKLDQVAESLKDFMRARGYAHILALENLIPASELIQAS 554
|
570 580 590
....*....|....*....|....*....|...
gi 2217290444 1022 SALQEENVklAEELGRSRDEVTSHQKLEEERSV 1054
Cdd:COG5185 555 NAKTDGQA--ANLRTAVIDELTQYLSTIESQQA 585
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
439-991 |
3.16e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 439 EISSLQEKLEVTRTDHQREITSLKEHFGAREETHQK--EIKALYTATEKlskeNESLKSKLEHANKENSDVIALWKSKLE 516
Cdd:pfam10174 189 EAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDpaKTKALQTVIEM----KDTKISSLERNIRDLEDEVQMLKTNGL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 517 TAIASHQQAMEELKV--SFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERaahaKEMEALRAKLmkviKEK 594
Cdd:pfam10174 265 LHTEDREEEIKQMEVykSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCK----QHIEVLKESL----TAK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 595 ENSLEAIRSKLDkAEDQHLVEMEDTLNKlqeaeiKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLdldALRKASSEG 674
Cdd:pfam10174 337 EQRAAILQTEVD-ALRLRLEEKESFLNK------KTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKIN---VLQKKIENL 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 675 KSEMKKLRQQLEAAEKQIKHLEieknAESSKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMlsSDLEKLRENLADM 754
Cdd:pfam10174 407 QEQLRDKDKQLAGLKERVKSLQ----TDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERL--EELESLKKENKDL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 755 EAKF----REKDEREEQLIKAKEKLENDIAEIMKmsgdNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSiED 830
Cdd:pfam10174 481 KEKVsalqPELTEKESSLIDLKEHASSLASSGLK----KDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTN-PE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 831 MTVKAEQSQQEAAKKHEEEKKELERKLSDLE--KKMETSHNQCQELKARYERATSETKTKHEEILQNLQktLLDTEDKLK 908
Cdd:pfam10174 556 INDRIRLLEQEVARYKEESGKAQAEVERLLGilREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIK--HGQQEMKKK 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 909 GAreensGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNK 988
Cdd:pfam10174 634 GA-----QLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILE 708
|
...
gi 2217290444 989 SKE 991
Cdd:pfam10174 709 MKQ 711
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
653-913 |
3.88e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 653 QLKATE-----EKLLDL-----------DALRKASSEGKS-EMKK--LRQQLEAAEKQIKHLEiEKNAE--SSKKEKFAE 711
Cdd:PHA02562 146 QLSAPArrklvEDLLDIsvlsemdklnkDKIRELNQQIQTlDMKIdhIQQQIKTYNKNIEEQR-KKNGEniARKQNKYDE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 712 ASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFrekdEREEQLIKAKEK------LENDIAEIMKM 785
Cdd:PHA02562 225 LVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI----EQFQKVIKMYEKggvcptCTQQISEGPDR 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 786 SGDNSSQLTKMNDELRLKERDVEELQLKLTKANEnasfLQKSIEDMTVKAEQSQQEaakkheeekkelerklsdlekkME 865
Cdd:PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNE----QSKKLLELKNKISTNKQS----------------------LI 354
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2217290444 866 TSHNQCQELKARYERATSETKTKHEEILQnLQKTLLDTEDKLKGAREE 913
Cdd:PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAK-LQDELDKIVKTKSELVKE 401
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
646-822 |
4.03e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 646 VIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHleiekNAESSKKEKFAEASEEAVSVQRSMQE 725
Cdd:PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE-----EAEKEAQQAIKEAKKEADEIIKELRQ 595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 726 TVNKLH--QKEEQfnmLSSDLEKLRENLADMEAKFREKDEREEQLiKAKEKLE----NDIAEIMKMSGDNSSQLT----K 795
Cdd:PRK00409 596 LQKGGYasVKAHE---LIEARKRLNKANEKKEKKKKKQKEKQEEL-KVGDEVKylslGQKGEVLSIPDDKEAIVQagimK 671
|
170 180 190
....*....|....*....|....*....|
gi 2217290444 796 MN---DELRLKERDVEELQLKLTKANENAS 822
Cdd:PRK00409 672 MKvplSDLEKIQKPKKKKKKKPKTVKPKPR 701
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1000-1189 |
4.06e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1000 MEEFRKEIETLKQAAAQKSqqLSALQEENVKLAEELGRSRDEVTSHQK------LEEERSVLNNQLlemkkreskfiKDA 1073
Cdd:COG3206 158 AEAYLEQNLELRREEARKA--LEFLEEQLPELRKELEEAEAALEEFRQknglvdLSEEAKLLLQQL-----------SEL 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1074 DEEKASLQKSISITSALLTEKDAELEKLRNEVTVLrGENASAKSLHSVVQTLESDKVKLELK-------VKNLELQLKEN 1146
Cdd:COG3206 225 ESQLAEARAELAEAEARLAALRAQLGSGPDALPEL-LQSPVIQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAAL 303
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2217290444 1147 KRQLSSSSGNTDTQADEDERAQESQIDFLNSVIVDLQRKNQDL 1189
Cdd:COG3206 304 RAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
653-1196 |
4.27e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 653 QLKATEEKLLD-LDALRKASSEG---KSEMKKLRQQLEAAEKQIKHLEIEKNAESSKKEKFAEASEEAVSVQRSMQETVN 728
Cdd:PRK01156 163 SLERNYDKLKDvIDMLRAEISNIdylEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALN 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 729 KLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKE--------------KLENDIAEIMKMSGDNSSQLT 794
Cdd:PRK01156 243 ELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINdpvyknrnyindyfKYKNDIENKKQILSNIDAEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 795 KMNDELRlKERDVEELQLKLTKANENASFLQKSIEDMtvkaeQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQEL 874
Cdd:PRK01156 323 KYHAIIK-KLSVLQKDYNDYIKKKSRYDDLNNQILEL-----EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEI 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 875 KARYERATSETKTKHEEILQNLQktllDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTA---------EDAMQIME 945
Cdd:PRK01156 397 LKIQEIDPDAIKKELNEINVKLQ----DISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCpvcgttlgeEKSNHIIN 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 946 QMTKEKTETLASLEDTKQTNAKLQNELDTLKennlKNVEELNKSK-ELLTVENQKMEEFRKEIETLKQAAAQ-KSQQLSA 1023
Cdd:PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDLK----KRKEYLESEEiNKSINEYNKIESARADLEDIKIKINElKDKHDKY 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1024 LQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRE-SKFIKDADEEKASLQKSI----SITSALLTEKDAEL 1098
Cdd:PRK01156 549 EEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEiKKQLNDLESRLQEIEIGFpddkSYIDKSIREIENEA 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1099 EKLRNEVTVLRGENASAKSLHSVVQTLESDKVKL---ELKVKNLELQLKENKRQLSSSSGNTDtQADEDERAQESQIDFL 1175
Cdd:PRK01156 629 NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsiIPDLKEITSRINDIEDNLKKSRKALD-DAKANRARLESTIEIL 707
|
570 580
....*....|....*....|.
gi 2217290444 1176 NSVIVDLQRKNQDLKMKVEMM 1196
Cdd:PRK01156 708 RTRINELSDRINDINETLESM 728
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
438-783 |
5.68e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 438 QEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQK--EIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKL 515
Cdd:COG5185 208 KESETGNLGSESTLLEKAKEIINIEEALKGFQDPESEleDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNL 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 516 ETAIASHQQAMEELKVSFSKGLGTETAE----FAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVI 591
Cdd:COG5185 288 IKQFENTKEKIAEYTKSIDIKKATESLEeqlaAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIV 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 592 KEKENSLEAirSKLDKAEDQHLVEMEDTLNKLQEAEIKVKE-LEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKA 670
Cdd:COG5185 368 GEVELSKSS--EELDSFKDTIESTKESLDEIPQNQRGYAQEiLATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 671 SSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAeSSKKEKFAEASEEAVSVQRSMQETVNKLHQK-EEQFNMLSSDLEKLRE 749
Cdd:COG5185 446 LISELNKVMREADEESQSRLEEAYDEINRSV-RSKKEDLNEELTQIESRVSTLKATLEKLRAKlERQLEGVRSKLDQVAE 524
|
330 340 350
....*....|....*....|....*....|....*
gi 2217290444 750 NLADMEAKFREKDER-EEQLIKAKEKLENDIAEIM 783
Cdd:COG5185 525 SLKDFMRARGYAHILaLENLIPASELIQASNAKTD 559
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
875-1221 |
5.75e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 875 KARYERATSETKtkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEEL---RKQADKAKAAQTAEDAMQIMEQMTKEK 951
Cdd:PLN02939 36 RARRRGFSSQQK---KKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTvmeLPQKSTSSDDDHNRASMQRDEAIAAID 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 952 TETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSK-----ELLTVENQKmEEFRKEIETLKQAAAQKSQQLSALQE 1026
Cdd:PLN02939 113 NEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARlqaleDLEKILTEK-EALQGKINILEMRLSETDARIKLAAQ 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1027 ENVK---LAEELGRSRDEVTshQKLEEERSVLNNQLLEMKkreskfikDADEEKASLQKSISITSALL---TEKDAELEK 1100
Cdd:PLN02939 192 EKIHveiLEEQLEKLRNELL--IRGATEGLCVHSLSKELD--------VLKEENMLLKDDIQFLKAELievAETEERVFK 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1101 LRNEVTVLrgeNASAKSLHSVVQTLESDKVKLEL--------KVKNLELQLkenkrqlssssgntDTQADEDERAqesqi 1172
Cdd:PLN02939 262 LEKERSLL---DASLRELESKFIVAQEDVSKLSPlqydcwweKVENLQDLL--------------DRATNQVEKA----- 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2217290444 1173 dflnsvIVDLQRkNQDLKMKVEMMSEAALNGNGDDLNNYDSDDQEKQSK 1221
Cdd:PLN02939 320 ------ALVLDQ-NQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLK 361
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
921-1159 |
6.14e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 6.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 921 LEE--LRKQADKAKAA-QTAEDAMQIMEQmTKEKTETLASLEDTKQTNAKLQNELDTLKEnnlknveelnkSKELLTVEN 997
Cdd:COG4913 218 LEEpdTFEAADALVEHfDDLERAHEALED-AREQIELLEPIRELAERYAAARERLAELEY-----------LRAALRLWF 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 998 --QKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSH-----QKLEEERSVLNNQLLEMKKRESKFI 1070
Cdd:COG4913 286 aqRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrlEQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1071 KDAD-------EEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS-LHSVVQTLESdkvkLELKVKNLELQ 1142
Cdd:COG4913 366 ALLAalglplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRReLRELEAEIAS----LERRKSNIPAR 441
|
250
....*....|....*..
gi 2217290444 1143 LKENKRQLSSSSGNTDT 1159
Cdd:COG4913 442 LLALRDALAEALGLDEA 458
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
901-1065 |
6.59e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.59 E-value: 6.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 901 LDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKE---------KTETLAS-LEDTKQTNAKLQN 970
Cdd:PRK04778 252 LDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREvkarkyvekNSDTLPDfLEHAKEQNKELKE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 971 ELDTLKENNLKNVEELNKSKELltvENQkMEEFRKEIETLKQAAAQKSQQLSALQ---EENVKLAEELGRSRDEVTSH-Q 1046
Cdd:PRK04778 332 EIDRVKQSYTLNESELESVRQL---EKQ-LESLEKQYDEITERIAEQEIAYSELQeelEEILKQLEEIEKEQEKLSEMlQ 407
|
170
....*....|....*....
gi 2217290444 1047 KLEEERSVLNNQLLEMKKR 1065
Cdd:PRK04778 408 GLRKDELEAREKLERYRNK 426
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
859-1065 |
6.60e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.61 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 859 DLEKKMEtshnqcqELKARYERATSETKTKHEEILQNLQKTL--------LDTEDKLKGAREENSGLLQELEELRKQADK 930
Cdd:pfam06160 190 ALEELME-------DIPPLYEELKTELPDQLEELKEGYREMEeegyalehLNVDKEIQQLEEQLEENLALLENLELDEAE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 931 AKAAQTAEDAMQIMEQMTKE----------KTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELltveNQKM 1000
Cdd:pfam06160 263 EALEEIEERIDQLYDLLEKEvdakkyveknLPEIEDYLEHAEEQNKELKEELERVQQSYTLNENELERVRGL----EKQL 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1001 EEFRKEIETLKQAAAQKSQ--------------QLSALQEENVKLAEELGRSR-DEVTSHQKLEEERSVLNNQLLEMKKR 1065
Cdd:pfam06160 339 EELEKRYDEIVERLEEKEVayselqeeleeileQLEEIEEEQEEFKESLQSLRkDELEAREKLDEFKLELREIKRLVEKS 418
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
950-1173 |
7.19e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 950 EKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLsalqEENV 1029
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL----GERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 1030 KLAEELGRSR---DEVTSHQKLEE--ERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNE 1104
Cdd:COG3883 93 RALYRSGGSVsylDVLLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217290444 1105 VTVLRGENASAkslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQID 1173
Cdd:COG3883 173 LEAQQAEQEAL------LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
337-681 |
8.19e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 337 VLELEAKMDQLRTMVEAADREKVELLNQL----EEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQ 412
Cdd:TIGR00618 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRaslkEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM 609
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 413 EVAELRRRLESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKalYTATEKLSKENES 492
Cdd:TIGR00618 610 LACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKEL--LASRQLALQKMQS 687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 493 LKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRL-DYQHEIENLQNQQDS 571
Cdd:TIGR00618 688 EKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQaRTVLKARTEAHFNNN 767
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 572 ERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEM-EDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNF 650
Cdd:TIGR00618 768 EEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIpSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEI 847
|
330 340 350
....*....|....*....|....*....|.
gi 2217290444 651 TSQLKATEEKLLDLDALRKASSEGKSEMKKL 681
Cdd:TIGR00618 848 THQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
360-1102 |
8.48e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 40.59 E-value: 8.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 360 ELLNQLEEEKRKVEDLQFRVEEESITKGDLE--VATVSEKS----RIMELEKDLALRVQEVAELRRRLESNKPagdvdms 433
Cdd:PTZ00440 540 GLIELIKYYLQSIETLIKDEKLKRSMKNDIKnkIKYIEENVdhikDIISLNDEIDNIIQQIEELINEALFNKE------- 612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 434 lSLLQEISSLQEKL-EVTRTDHQREITSLKEHFGAREETHQKEIKALYTaTEKLSKENESLKSKLEHANKENSD----VI 508
Cdd:PTZ00440 613 -KFINEKNDLQEKVkYILNKFYKGDLQELLDELSHFLDDHKYLYHEAKS-KEDLQTLLNTSKNEYEKLEFMKSDnidnII 690
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 509 ALWKSKLETAIASHQQAMEE----LKVSFSKGLGTETAEFAELKTQIEKMRLD------YQHEIE--------NLQNQQD 570
Cdd:PTZ00440 691 KNLKKELQNLLSLKENIIKKqlnnIEQDISNSLNQYTIKYNDLKSSIEEYKEEeeklevYKHQIInrknefilHLYENDK 770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 571 SERAAHAKEMEALRAKLMKVIKEKE--NSLEAIRSKLDKAEDqhlvemedtlnKLQEAEIKVKELEVLQAKCNEQTKVID 648
Cdd:PTZ00440 771 DLPDGKNTYEEFLQYKDTILNKENKisNDINILKENKKNNQD-----------LLNSYNILIQKLEAHTEKNDEELKQLL 839
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 649 NFTSqlkaTEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQ---IKHLEIEKNAESSKK---EKFAE----------- 711
Cdd:PTZ00440 840 QKFP----TEDENLNLKELEKEFNENNQIVDNIIKDIENMNKNiniIKTLNIAINRSNSNKqlvEHLLNnkidlknkleq 915
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 712 -----------ASEEAVSVQRSMQETVNKLHQK--EEQFNMLSSDLEKLRENLADMEAKFREKDERE-EQLIKAKEKLEN 777
Cdd:PTZ00440 916 hmkiintdniiQKNEKLNLLNNLNKEKEKIEKQlsDTKINNLKMQIEKTLEYYDKSKENINGNDGTHlEKLDKEKDEWEH 995
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 778 DIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKA-----NENASFLQKSIEDMTVK------AEQSQQEAAKKH 846
Cdd:PTZ00440 996 FKSEIDKLNVNYNILNKKIDDLIKKQHDDIIELIDKLIKEkgkeiEEKVDQYISLLEKMKTKlssfhfNIDIKKYKNPKI 1075
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 847 EEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDklkgAREENSGLLQELEELRK 926
Cdd:PTZ00440 1076 KEEIKLLEEKVEALLKKIDENKNKLIEIKNKSHEHVVNADKEKNKQTEHYNKKKKSLEK----IYKQMEKTLKELENMNL 1151
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 927 QADKAKAAQTAEDAMQ------IMEQMTKEKTETLASLEDTKQTNAKL-QNELDTLKENNLKNVE-ELNKSKELLTVENQ 998
Cdd:PTZ00440 1152 EDITLNEVNEIEIEYErilidhIVEQINNEAKKSKTIMEEIESYKKDIdQVKKNMSKERNDHLTTfEYNAYYDKATASYE 1231
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 999 KMEEFRKEIETLKqAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRE-----SKFIKDA 1073
Cdd:PTZ00440 1232 NIEELTTEAKGLK-GEANRSTNVDELKEIKLQVFSYLQQVIKENNKMENALHEIKNMYEFLISIDSEKilkeiLNSTKKA 1310
|
810 820
....*....|....*....|....*....
gi 2217290444 1074 DEEKASLQKSISITSALLTEKDAELEKLR 1102
Cdd:PTZ00440 1311 EEFSNDAKKELEKTDNLIKQVEAKIEQAK 1339
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
338-642 |
8.56e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 338 LELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAEL 417
Cdd:pfam07888 69 EQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLER 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 418 RRRLESNKPagDVDMSLSLLQEI----SSLQEKLEVTRTDHQR---EITSLKEHFGAREETHQKEIKALYTATEKLSK-- 488
Cdd:pfam07888 149 ETELERMKE--RAKKAGAQRKEEeaerKQLQAKLQQTEEELRSlskEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTah 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 489 ----ENESLKSKL----EHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKgLGTETAEFAELKTQIEKMRLDYQH 560
Cdd:pfam07888 227 rkeaENEALLEELrslqERLNASERKVEGL-GEELSSMAAQRDRTQAELHQARLQ-AAQLTLQLADASLALREGRARWAQ 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 561 EIENLQNQQDSERAAHAKEMEALRaKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQE--AEIKV--KELEVL 636
Cdd:pfam07888 305 ERETLQQSAEADKDRIEKLSAELQ-RLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQElkASLRVaqKEKEQL 383
|
....*.
gi 2217290444 637 QAKCNE 642
Cdd:pfam07888 384 QAEKQE 389
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
858-953 |
8.94e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 858 SDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDK----LKGAREENSGLLQELEELRKQADKAKA 933
Cdd:PRK00409 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEaqqaIKEAKKEADEIIKELRQLQKGGYASVK 605
|
90 100
....*....|....*....|
gi 2217290444 934 AQTAEDAMQIMEQMTKEKTE 953
Cdd:PRK00409 606 AHELIEARKRLNKANEKKEK 625
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
579-685 |
9.05e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 579 EMEALRAKLMKVIKEKEnslEAIRSKlDKAEDQHLVEMEDTLNKLQEaeikvkELEVLQAKCNEQTKVIDNFTSQLKATE 658
Cdd:COG0542 412 ELDELERRLEQLEIEKE---ALKKEQ-DEASFERLAELRDELAELEE------ELEALKARWEAEKELIEEIQELKEELE 481
|
90 100
....*....|....*....|....*..
gi 2217290444 659 EKLLDLDALRKASSEGKSEMKKLRQQL 685
Cdd:COG0542 482 QRYGKIPELEKELAELEEELAELAPLL 508
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
917-1088 |
9.25e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.08 E-value: 9.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 917 LLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVE 996
Cdd:PRK12705 31 LAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEER 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217290444 997 NQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKlaEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEE 1076
Cdd:PRK12705 111 EKALSARELELEELEKQLDNELYRVAGLTPEQAR--KLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQR 188
|
170
....*....|...
gi 2217290444 1077 KAS-LQKSISITS 1088
Cdd:PRK12705 189 IASeTASDLSVSV 201
|
|
| |
