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Conserved domains on  [gi|2296795309|ref|XP_050452127|]
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xyloside xylosyltransferase 1-like [Cataglyphis hispanica]

Protein Classification

glycosyltransferase family protein( domain architecture ID 27718)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyco_tranf_GTA_type super family cl11394
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
98-336 8.89e-17

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


The actual alignment was detected with superfamily member cd06431:

Pssm-ID: 472172  Cd Length: 280  Bit Score: 79.44  E-value: 8.89e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309  98 RKFQIFVDSLLRLSSVNIAFHVISDdeskSIAQIVIRDVkVNTGKFIKFQVFYYDvhilATQLEDIVSVMsphfsskPGT 177
Cdd:cd06431    14 RDVVTLVKSVLFYRRNPLHFHLITD----EIARRILATL-FQTWMVPAVEVSFYN----AEELKSRVSWI-------PNK 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 178 YYSDALFFLSLGMHKIAPSHQKLAVMFDADTKFRRDVKDLFEEFNNFGKEALFGLAPELTPVYrhVLYLYRTKHPTTMFG 257
Cdd:cd06431    78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWY--LGNLWKNHRPWPALG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 258 EprhkggypGYNSGMVLFNLERLRK-SFEYKEIVTknsvdtmTEKY---HFKGHLGDQDFYTLLGMERPELIHTVDCGWN 333
Cdd:cd06431   156 R--------GFNTGVILLDLDKLRKmKWESMWRLT-------AERElmsMLSTSLADQDIFNAVIKQNPFLVYQLPCAWN 220

                  ...
gi 2296795309 334 RQL 336
Cdd:cd06431   221 VQL 223
 
Name Accession Description Interval E-value
GT8_LARGE_C cd06431
LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in ...
98-336 8.89e-17

LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis; The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil motif, and two putative catalytic domains. This catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis.


Pssm-ID: 133053  Cd Length: 280  Bit Score: 79.44  E-value: 8.89e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309  98 RKFQIFVDSLLRLSSVNIAFHVISDdeskSIAQIVIRDVkVNTGKFIKFQVFYYDvhilATQLEDIVSVMsphfsskPGT 177
Cdd:cd06431    14 RDVVTLVKSVLFYRRNPLHFHLITD----EIARRILATL-FQTWMVPAVEVSFYN----AEELKSRVSWI-------PNK 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 178 YYSDALFFLSLGMHKIAPSHQKLAVMFDADTKFRRDVKDLFEEFNNFGKEALFGLAPELTPVYrhVLYLYRTKHPTTMFG 257
Cdd:cd06431    78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWY--LGNLWKNHRPWPALG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 258 EprhkggypGYNSGMVLFNLERLRK-SFEYKEIVTknsvdtmTEKY---HFKGHLGDQDFYTLLGMERPELIHTVDCGWN 333
Cdd:cd06431   156 R--------GFNTGVILLDLDKLRKmKWESMWRLT-------AERElmsMLSTSLADQDIFNAVIKQNPFLVYQLPCAWN 220

                  ...
gi 2296795309 334 RQL 336
Cdd:cd06431   221 VQL 223
RfaJ COG1442
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope ...
106-363 3.39e-08

Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441051 [Multi-domain]  Cd Length: 301  Bit Score: 54.21  E-value: 3.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 106 SLLRLSS-VNIAFHVISDDESKSIAQIVIRDVKVNtgkfiKFQVFYYDVHilATQLEDIVSvmSPHFSskPGTYYSdalf 184
Cdd:COG1442    26 SLLENNPdRPYDFHILTDGLSDENKERLEALAAKY-----NVSIEFIDVD--DELLKDLPV--SKHIS--KATYYR---- 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 185 flsLGMHKIAPSHQKLAVMFDADTKFRRDVKDLFE-EFNNfgkeALFGLAPELTPVYRHVLYLYRTKHPttmfgeprHKG 263
Cdd:COG1442    91 ---LLIPELLPDDYDKVLYLDADTLVLGDLSELWDiDLGG----NLLAAVRDGTVTGSQKKRAKRLGLP--------DDD 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 264 GYpgYNSGMVLFNLERLRksfeyKEIVTKNSVDTMtEKYHFKGHLGDQDFYTLLGMERpelIHTVDCGWNRQlCTWWRDR 343
Cdd:COG1442   156 GY--FNSGVLLINLKKWR-----EENITEKALEFL-KENPDKLKYPDQDILNIVLGGK---VKFLPPRYNYQ-YSLYYEL 223
                         250       260
                  ....*....|....*....|
gi 2296795309 344 GYADIFANYSECHSEIKLWH 363
Cdd:COG1442   224 KDKSNKKELLEARKNPVIIH 243
 
Name Accession Description Interval E-value
GT8_LARGE_C cd06431
LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in ...
98-336 8.89e-17

LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis; The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil motif, and two putative catalytic domains. This catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis.


Pssm-ID: 133053  Cd Length: 280  Bit Score: 79.44  E-value: 8.89e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309  98 RKFQIFVDSLLRLSSVNIAFHVISDdeskSIAQIVIRDVkVNTGKFIKFQVFYYDvhilATQLEDIVSVMsphfsskPGT 177
Cdd:cd06431    14 RDVVTLVKSVLFYRRNPLHFHLITD----EIARRILATL-FQTWMVPAVEVSFYN----AEELKSRVSWI-------PNK 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 178 YYSDALFFLSLGMHKIAPSHQKLAVMFDADTKFRRDVKDLFEEFNNFGKEALFGLAPELTPVYrhVLYLYRTKHPTTMFG 257
Cdd:cd06431    78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWY--LGNLWKNHRPWPALG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 258 EprhkggypGYNSGMVLFNLERLRK-SFEYKEIVTknsvdtmTEKY---HFKGHLGDQDFYTLLGMERPELIHTVDCGWN 333
Cdd:cd06431   156 R--------GFNTGVILLDLDKLRKmKWESMWRLT-------AERElmsMLSTSLADQDIFNAVIKQNPFLVYQLPCAWN 220

                  ...
gi 2296795309 334 RQL 336
Cdd:cd06431   221 VQL 223
RfaJ COG1442
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope ...
106-363 3.39e-08

Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441051 [Multi-domain]  Cd Length: 301  Bit Score: 54.21  E-value: 3.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 106 SLLRLSS-VNIAFHVISDDESKSIAQIVIRDVKVNtgkfiKFQVFYYDVHilATQLEDIVSvmSPHFSskPGTYYSdalf 184
Cdd:COG1442    26 SLLENNPdRPYDFHILTDGLSDENKERLEALAAKY-----NVSIEFIDVD--DELLKDLPV--SKHIS--KATYYR---- 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 185 flsLGMHKIAPSHQKLAVMFDADTKFRRDVKDLFE-EFNNfgkeALFGLAPELTPVYRHVLYLYRTKHPttmfgeprHKG 263
Cdd:COG1442    91 ---LLIPELLPDDYDKVLYLDADTLVLGDLSELWDiDLGG----NLLAAVRDGTVTGSQKKRAKRLGLP--------DDD 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 264 GYpgYNSGMVLFNLERLRksfeyKEIVTKNSVDTMtEKYHFKGHLGDQDFYTLLGMERpelIHTVDCGWNRQlCTWWRDR 343
Cdd:COG1442   156 GY--FNSGVLLINLKKWR-----EENITEKALEFL-KENPDKLKYPDQDILNIVLGGK---VKFLPPRYNYQ-YSLYYEL 223
                         250       260
                  ....*....|....*....|
gi 2296795309 344 GYADIFANYSECHSEIKLWH 363
Cdd:COG1442   224 KDKSNKKELLEARKNPVIIH 243
Glyco_transf_8 cd00505
Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis ...
90-368 1.34e-07

Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis; Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.


Pssm-ID: 132996 [Multi-domain]  Cd Length: 246  Bit Score: 52.06  E-value: 1.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309  90 VASNSPMKRKFQIFVDSLLRLSSVNIAFHVISDDESKSIaqiviRDVKVNTGKFIKFQVFYYDVHIlatqlEDIVSVMSP 169
Cdd:cd00505     6 VATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTF-----KAALDNLRKLYNFNYELIPVDI-----LDSVDSEHL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 170 HFSSKPGTYysdALFFLSlgmhKIAPSHQKLaVMFDADTKFRRDVKDLfeeFNNFGKEALFGLAPELTPVYRHVLYLYRT 249
Cdd:cd00505    76 KRPIKIVTL---TKLHLP----NLVPDYDKI-LYVDADILVLTDIDEL---WDTPLGGQELAAAPDPGDRREGKYYRQKR 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 250 KHPTtmfgeprhkGGYpGYNSGMVLFNLERLRksfeYKEIVTKNSvdtmtEKYHFKGH---LGDQDFYTLLGMERPELIH 326
Cdd:cd00505   145 SHLA---------GPD-YFNSGVFVVNLSKER----RNQLLKVAL-----EKWLQSLSslsGGDQDLLNTFFKQVPFIVK 205
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2296795309 327 TVDCGWNrqlctwWRDRGYADIFANYSECHSEIKLWHGNCNT 368
Cdd:cd00505   206 SLPCIWN------VRLTGCYRSLNCFKAFVKNAKVIHFNGPT 241
GT8_like_2 cd06430
GT8_like_2 represents a subfamily of GT8 with unknown function; A subfamily of ...
205-333 1.03e-06

GT8_like_2 represents a subfamily of GT8 with unknown function; A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.


Pssm-ID: 133052  Cd Length: 304  Bit Score: 49.77  E-value: 1.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 205 DADTKFRRDVKDLFEEFNNFGKEALFGLAPElTPVYRHVLYLYRTKHPTTmfgeprhkgGYPGYNSGMVLFNLERLRKSF 284
Cdd:cd06430   104 DTDILFLRPVEEIWSFLKKFNSTQLAAMAPE-HEEPNIGWYNRFARHPYY---------GKTGVNSGVMLMNLTRMRRKY 173
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2296795309 285 EYKEIVTKN-----SVDTMTEKYHFKGHLGDQDFYTLLGMERPELIHTVDCGWN 333
Cdd:cd06430   174 FKNDMTPVGlrweeILMPLYKKYKLKITWGDQDLINIIFHHNPEMLYVFPCHWN 227
GT8_A4GalT_like cd04194
A4GalT_like proteins catalyze the addition of galactose or glucose residues to the ...
114-333 1.55e-04

A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface; The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.


Pssm-ID: 133037 [Multi-domain]  Cd Length: 248  Bit Score: 42.97  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 114 NIAFHVISDDES----KSIAQIV------IRDVKVNTGKFIKFQVFyydvhilatqledivsvmSPHFSSkpGTYYSdaL 183
Cdd:cd04194    30 DYDFYILNDDISeenkKKLKELLkkynssIEFIKIDNDDFKFFPAT------------------TDHISY--ATYYR--L 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2296795309 184 FflslgMHKIAPSHQKlAVMFDADTKFRRDVKDLFE-EFNNfgkeALFGLAPEltPVYRHVLYLYRTKHPTTmfgeprhk 262
Cdd:cd04194    88 L-----IPDLLPDYDK-VLYLDADIIVLGDLSELFDiDLGD----NLLAAVRD--PFIEQEKKRKRRLGGYD-------- 147
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2296795309 263 gGYPGYNSGMVLFNLERLRksfeyKEIVTKNSVDtMTEKYHFKGHLGDQDFYTLLGMERpelIHTVDCGWN 333
Cdd:cd04194   148 -DGSYFNSGVLLINLKKWR-----EENITEKLLE-LIKEYGGRLIYPDQDILNAVLKDK---ILYLPPRYN 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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