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Conserved domains on  [gi|2449489716|ref|XP_053665776|]
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cytosolic carboxypeptidase 2-like [Anopheles marshallii]

Protein Classification

M14 family cytosolic carboxypeptidase CCP2/3( domain architecture ID 15732948)

M14 family metallopeptidase is a zinc-binding carboxypeptidase which hydrolyzes a single, C-terminal amino acid from a polypeptide chain, and has a recognition site for the free C-terminal carboxyl group

EC:  3.4.17.-
Gene Ontology:  GO:0006508|GO:0008270
PubMed:  7674922|10493853

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
M14_AGBL2-3_like cd06907
Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins; ...
335-587 6.78e-161

Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins; Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


:

Pssm-ID: 349478  Cd Length: 252  Bit Score: 477.17  E-value: 6.78e-161
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  335 KSKFCKLRLLCRSLAGNNVYYLTVTAPTTHEDDnQKKKKAVIITARVHPGESPSSWMMKGLMDFITGDSYVAKKLRHKFI 414
Cdd:cd06907      1 RSQYCKRRVLCRTLAGNSVYVLTITSPSSNPEE-AKAKKAVVLTARVHPGETNASWMMKGFLDFLTGSSPDAKLLRDNFV 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  415 FKLVPMLNPDGVIVGNTRSSLTGRDLNRQYRTVIRETYPSIWNTKAMIRRLMEDCGVAMYCDMHAHSRKHNVFIYGCENl 494
Cdd:cd06907     80 FKIVPMLNPDGVIVGNYRCSLAGRDLNRNYKTPLKESFPTIWHTKMMIKRLLEEREVILYCDLHGHSRKQNVFMYGCEN- 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  495 KRHPDRRLLEQVFPLMLHKNVADKFSFENCKFKVQKNKEGTGRIVVWVLGVTNSYTLEASFGGSTMGGRAGTHFSTADYE 574
Cdd:cd06907    159 RKNPEKPLKERVFPLMLSKNAPDKFSFESCKFKVQKSKEGTGRVVMWREGILNSYTLEATFCGSTLGRRKGTHFNTLDFE 238
                          250
                   ....*....|...
gi 2449489716  575 HIGRAYCETLMDY 587
Cdd:cd06907    239 AMGYHFCDTLLDY 251
Pepdidase_M14_N super family cl39445
Cytosolic carboxypeptidase N-terminal domain; This entry corresponds to the N-terminal domain ...
167-313 1.23e-14

Cytosolic carboxypeptidase N-terminal domain; This entry corresponds to the N-terminal domain of cytosolic carboxypeptidases. The N-terminal domain folds into a nine-stranded antiparallel beta sandwich. This domain is specific to CCP proteins and is absent in other carboxypeptidases. It has been hypothesized that the N-terminal domain might contribute to folding, might have a regulatory function and/or might be involved in binding other proteins.


The actual alignment was detected with superfamily member pfam18027:

Pssm-ID: 407865  Cd Length: 107  Bit Score: 70.78  E-value: 1.23e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  167 FESRFESGNLGRAIKITPTYYELYLRPDmYTNRHTQWFYFQVKNTkAKVVYRFSIINLTKpdSLYKEGMRPLmysTMDAE 246
Cdd:pfam18027    1 ISSNFDSGNIEVVSASDPDAIRLRIRPD-NGSEHFQWFYFRVSGA-RGRPLTFVIENAGE--ASYPDGWTGY---RVVAS 73
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2449489716  247 CNQVGWRRCGdniAYFRNEdnsngynyshyhhrpvdddedeyigtssfTLSFNieFKYDGDTVYFAH 313
Cdd:pfam18027   74 YDRENWFRVP---TEYDGG-----------------------------VLTIT--HTPEADTVYFAY 106
 
Name Accession Description Interval E-value
M14_AGBL2-3_like cd06907
Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins; ...
335-587 6.78e-161

Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins; Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349478  Cd Length: 252  Bit Score: 477.17  E-value: 6.78e-161
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  335 KSKFCKLRLLCRSLAGNNVYYLTVTAPTTHEDDnQKKKKAVIITARVHPGESPSSWMMKGLMDFITGDSYVAKKLRHKFI 414
Cdd:cd06907      1 RSQYCKRRVLCRTLAGNSVYVLTITSPSSNPEE-AKAKKAVVLTARVHPGETNASWMMKGFLDFLTGSSPDAKLLRDNFV 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  415 FKLVPMLNPDGVIVGNTRSSLTGRDLNRQYRTVIRETYPSIWNTKAMIRRLMEDCGVAMYCDMHAHSRKHNVFIYGCENl 494
Cdd:cd06907     80 FKIVPMLNPDGVIVGNYRCSLAGRDLNRNYKTPLKESFPTIWHTKMMIKRLLEEREVILYCDLHGHSRKQNVFMYGCEN- 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  495 KRHPDRRLLEQVFPLMLHKNVADKFSFENCKFKVQKNKEGTGRIVVWVLGVTNSYTLEASFGGSTMGGRAGTHFSTADYE 574
Cdd:cd06907    159 RKNPEKPLKERVFPLMLSKNAPDKFSFESCKFKVQKSKEGTGRVVMWREGILNSYTLEATFCGSTLGRRKGTHFNTLDFE 238
                          250
                   ....*....|...
gi 2449489716  575 HIGRAYCETLMDY 587
Cdd:cd06907    239 AMGYHFCDTLLDY 251
MpaA COG2866
Murein tripeptide amidase MpaA [Cell wall/membrane/envelope biogenesis];
317-478 1.41e-25

Murein tripeptide amidase MpaA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442113 [Multi-domain]  Cd Length: 337  Bit Score: 109.39  E-value: 1.41e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  317 YTYSDLQDYLMCIQRNPvksKFCKLRLLCRSLAGNNVYYLTVTaptthedDNQKKKKAVIITARVHPGESPSSWMMKGLM 396
Cdd:COG2866     20 YTYEELLALLAKLAAAS---PLVELESIGKSVEGRPIYLLKIG-------DPAEGKPKVLLNAQQHGNEWTGTEALLGLL 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  397 DFI-TGDSYVAKKLRHKFIFKLVPMLNPDGVIVgNTRSSLTGRDLNRQYRTVIrETYPsiwNTKAMiRRLMEDCGVAMYC 475
Cdd:COG2866     90 EDLlDNYDPLIRALLDNVTLYIVPMLNPDGAER-NTRTNANGVDLNRDWPAPW-LSEP---ETRAL-RDLLDEHDPDFVL 163

                   ...
gi 2449489716  476 DMH 478
Cdd:COG2866    164 DLH 166
Zn_pept smart00631
Zn_pept domain;
317-557 2.08e-20

Zn_pept domain;


Pssm-ID: 214748 [Multi-domain]  Cd Length: 277  Bit Score: 92.78  E-value: 2.08e-20
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716   317 YTYSDLQDYLMCI-QRNPvksKFCKLRLLCRSLAGNNVYYLTVTAPTTHEddnqkkKKAVIITARVHPGESPSSWMMKGL 395
Cdd:smart00631    2 HSYEEIEAWLKELaARYP---DLVRLVSIGKSVEGRPIWVLKISNGGSHD------KPAIFIDAGIHAREWIGPATALYL 72
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716   396 MDFIT---GDSYVAKKLRHKFIFKLVPMLNPDGVIVGNT-----------RSSLTGRDLNRQY-------RTVIRETYP- 453
Cdd:smart00631   73 INQLLenyGRDPRVTNLLDKTDIYIVPVLNPDGYEYTHTgdrlwrknrspNSNCRGVDLNRNFpfhwgetGNPCSETYAg 152
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716   454 ----SIWNTKAMIRRLMEDCGVAMYCDMHAHSRKHNvFIYGCENLKRHPDRRLLEQVFplmlhKNVADKFSFENCKfkvq 529
Cdd:smart00631  153 pspfSEPETKAVRDFIRSNRRFKLYIDLHSYSQLIL-YPYGYTKNDLPPNVDDLDAVA-----KALAKALASVHGT---- 222
                           250       260       270       280
                    ....*....|....*....|....*....|....*....|
gi 2449489716   530 KNKEGTGRIVVW------------VLGVTNSYTLEASFGG 557
Cdd:smart00631  223 RYTYGISNGAIYpasggsddwaygVLGIPFSFTLELRDDG 262
Pepdidase_M14_N pfam18027
Cytosolic carboxypeptidase N-terminal domain; This entry corresponds to the N-terminal domain ...
167-313 1.23e-14

Cytosolic carboxypeptidase N-terminal domain; This entry corresponds to the N-terminal domain of cytosolic carboxypeptidases. The N-terminal domain folds into a nine-stranded antiparallel beta sandwich. This domain is specific to CCP proteins and is absent in other carboxypeptidases. It has been hypothesized that the N-terminal domain might contribute to folding, might have a regulatory function and/or might be involved in binding other proteins.


Pssm-ID: 407865  Cd Length: 107  Bit Score: 70.78  E-value: 1.23e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  167 FESRFESGNLGRAIKITPTYYELYLRPDmYTNRHTQWFYFQVKNTkAKVVYRFSIINLTKpdSLYKEGMRPLmysTMDAE 246
Cdd:pfam18027    1 ISSNFDSGNIEVVSASDPDAIRLRIRPD-NGSEHFQWFYFRVSGA-RGRPLTFVIENAGE--ASYPDGWTGY---RVVAS 73
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2449489716  247 CNQVGWRRCGdniAYFRNEdnsngynyshyhhrpvdddedeyigtssfTLSFNieFKYDGDTVYFAH 313
Cdd:pfam18027   74 YDRENWFRVP---TEYDGG-----------------------------VLTIT--HTPEADTVYFAY 106
Peptidase_M14 pfam00246
Zinc carboxypeptidase;
346-560 1.64e-14

Zinc carboxypeptidase;


Pssm-ID: 459730 [Multi-domain]  Cd Length: 287  Bit Score: 75.41  E-value: 1.64e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  346 RSLAGNNVYYLTVTAPTThedDNQKKKKAVIITARVHPGESPSS----WMMKGLMDFITGDSYVaKKLRHKFIFKLVPML 421
Cdd:pfam00246   23 KSVEGRPLKVLKISSGPG---EHNPGKPAVFIDGGIHAREWIGPatalYLIHQLLTNYGRDPEI-TELLDDTDIYILPVV 98
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  422 NPDGVIVGNT-------------RSSLTGRDLNRQY----------RTVIRETY-----PSIWNTKAMIRRLMEDCGVAM 473
Cdd:pfam00246   99 NPDGYEYTHTtdrlwrknrsnanGSSCIGVDLNRNFpdhwnevgasSNPCSETYrgpapFSEPETRAVADFIRSKKPFVL 178
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  474 YCDMHAHSRKHNvFIYGCENLKRHPDRRLLEQV---FPLMLHKNVADKFSFENCkFKVQKNKEGTGRIVVWV---LGVTN 547
Cdd:pfam00246  179 YISLHSYSQVLL-YPYGYTRDEPPPDDEELKSLaraAAKALQKMVRGTSYTYGI-TNGATIYPASGGSDDWAygrLGIKY 256
                          250
                   ....*....|...
gi 2449489716  548 SYTLEASFGGSTM 560
Cdd:pfam00246  257 SYTIELRDTGRYG 269
 
Name Accession Description Interval E-value
M14_AGBL2-3_like cd06907
Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins; ...
335-587 6.78e-161

Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins; Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349478  Cd Length: 252  Bit Score: 477.17  E-value: 6.78e-161
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  335 KSKFCKLRLLCRSLAGNNVYYLTVTAPTTHEDDnQKKKKAVIITARVHPGESPSSWMMKGLMDFITGDSYVAKKLRHKFI 414
Cdd:cd06907      1 RSQYCKRRVLCRTLAGNSVYVLTITSPSSNPEE-AKAKKAVVLTARVHPGETNASWMMKGFLDFLTGSSPDAKLLRDNFV 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  415 FKLVPMLNPDGVIVGNTRSSLTGRDLNRQYRTVIRETYPSIWNTKAMIRRLMEDCGVAMYCDMHAHSRKHNVFIYGCENl 494
Cdd:cd06907     80 FKIVPMLNPDGVIVGNYRCSLAGRDLNRNYKTPLKESFPTIWHTKMMIKRLLEEREVILYCDLHGHSRKQNVFMYGCEN- 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  495 KRHPDRRLLEQVFPLMLHKNVADKFSFENCKFKVQKNKEGTGRIVVWVLGVTNSYTLEASFGGSTMGGRAGTHFSTADYE 574
Cdd:cd06907    159 RKNPEKPLKERVFPLMLSKNAPDKFSFESCKFKVQKSKEGTGRVVMWREGILNSYTLEATFCGSTLGRRKGTHFNTLDFE 238
                          250
                   ....*....|...
gi 2449489716  575 HIGRAYCETLMDY 587
Cdd:cd06907    239 AMGYHFCDTLLDY 251
M14_AGTPBP-like cd06235
Peptidase M14-like domain of human Nna1/AGTPBP-1, AGBL2 -5, and related proteins; Subgroup of ...
338-586 4.17e-85

Peptidase M14-like domain of human Nna1/AGTPBP-1, AGBL2 -5, and related proteins; Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349454  Cd Length: 256  Bit Score: 276.65  E-value: 4.17e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  338 FCKLRLLCRSLAGNNVYYLTVTAPttheddNQKK----------KKAVIITARVHPGESPSSWMMKGLMDFITGDSYVAK 407
Cdd:cd06235      2 YFEREVLCHSLDGRKLDLLTITSP------NNKKlgpyprefagKKVVFLSGRVHPGETPASFVMKGFLDFLLSNDPRAQ 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  408 KLRHKFIFKLVPMLNPDGVIVGNTRSSLTGRDLNRQYRTVIRETYPSIWNTKAMIRRLMEDC--GVAMYCDMHAHSRKHN 485
Cdd:cd06235     76 LLREHFVFKIVPMLNPDGVIRGNYRCSLNGFNLNRHYKNPDPELHPTIYGAKKVIDYLQKTYkrRVLMYCDFHGHSSKSN 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  486 VFIYGCENLKRhpDRRLLEQVFPLMLHKNVADKFSFENCKFKVQKNKEGTGRIVVW-VLGVTNSYTLEASFGGSTMGGR- 563
Cdd:cd06235    156 GFMYGNSFPDT--VQFHWNMVFPKILSLNAPDFFSSSCCSFGVMKSKEGTGRVVFGrRLIHSHSYTLESTFFSNNRGNId 233
                          250       260
                   ....*....|....*....|...
gi 2449489716  564 AGTHFSTADYEHIGRAYCETLMD 586
Cdd:cd06235    234 GACGYTEENLEDLGYSVASTLLD 256
M14_Nna1 cd06906
Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; ...
344-585 4.07e-72

Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349477  Cd Length: 271  Bit Score: 241.13  E-value: 4.07e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  344 LCRSLAGNNVYYLTVTA---PTTHEDDNQKKKKAVI-ITARVHPGESPSSWMMKGLMDFITGDSYVAKKLRHKFIFKLVP 419
Cdd:cd06906     10 LCETLGGNSCPVLTITAmpeSNNEEHICQFRNRPYIfLSARVHPGESNASWVMKGTLDFLLSSSPAAQSLRESYIFKIVP 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  420 MLNPDGVIVGNTRSSLTGRDLNRQYRTVIRETYPSIWNTKAMIRRLMEDCGVAM-YCDMHAHSRKHNVFIYGC------- 491
Cdd:cd06906     90 MLNPDGVINGNHRCSLSGEDLNRRWLNPNPELHPTIYHTKGLLQYLRSIGRLPLvYCDYHGHSRKKNVFMYGCspkesws 169
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  492 ENLKRHPDRRLLEQV----FPLMLHkNVADKFSFENCKFKVQKNKEGTGRIVVW-VLGVTNSYTLEASFGGSTMGGRAGT 566
Cdd:cd06906    170 HGDTNNPSGDIVEDLgyrtLPKLLS-HFAPAFSLSSCSFVVEKSKESTARVVVWrEIGVLRSYTMESTYCGCDQGKYKGL 248
                          250
                   ....*....|....*....
gi 2449489716  567 HFSTADYEHIGRAYCETLM 585
Cdd:cd06906    249 HIGTRELEEMGARFCEALL 267
M14_AGBL4_like cd06908
Peptidase M14-like domain of ATP/GTP binding protein AGBL-4 and related proteins; Peptidase ...
343-588 3.94e-71

Peptidase M14-like domain of ATP/GTP binding protein AGBL-4 and related proteins; Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349479  Cd Length: 254  Bit Score: 237.58  E-value: 3.94e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  343 LLCRSLAGNNVYYLTVTAPTTHEDDNQKKKKAVIITARVHPGESPSSWMMKGLMDFITGDSYVAKKLRHKFIFKLVPMLN 422
Cdd:cd06908      7 LLGKSVQQRRLDLLTITDPVNKHLTVEKKKKVVFITARVHPGETPSSFVCQGLIDFLVSNHPVAKVLRDHLVFKIVPMLN 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  423 PDGVIVGNTRSSLTGRDLNRQYRTVIRETYPSIWNTKAMIRRLMED--CGVAMYCDMHAHSRKHNVFIYGceNLKRHPDR 500
Cdd:cd06908     87 PDGVFLGNYRCSLMGFDLNRHWHEPSPWAHPTLYAVKNLLRELDNDptVQLDFYIDIHAHSTLMNGFMYG--NIYDDVYR 164
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  501 RLLEQVFPLMLHKNvADKFSFENCKFKVQKNKEGTGRIVVWVLGVTNS--YTLEASFGG-STMGGRAGTHFSTADYEHIG 577
Cdd:cd06908    165 FERQAVFPKLLCQN-AEDFSLSNTVFNRDPVKAGTGRRFLGGLLDDTAncYTLEVSFYSyRLSDSSSATPYTEEGYMKLG 243
                          250
                   ....*....|.
gi 2449489716  578 RAYCETLMDYY 588
Cdd:cd06908    244 RNMARALLDYY 254
M14_AGBL5_like cd06236
Peptidase M14-like domain of ATP/GTP binding protein (AGBL)-5 and related proteins; Peptidase ...
343-592 1.58e-52

Peptidase M14-like domain of ATP/GTP binding protein (AGBL)-5 and related proteins; Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349455  Cd Length: 263  Bit Score: 185.16  E-value: 1.58e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  343 LLCRSLAGNNVYYLTVTA------------PTTHEDDNQ------KKKKAVIITARVHPGESPSSWMMKGLMDFI--TGD 402
Cdd:cd06236     13 LLCYSLEGRRVDLLTITSchgvteereerlPNLFPDTSKprphkfEGKKVVFISARVHPGETPSSFVFNGFLEFLlrPDD 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  403 SyVAKKLRHKFIFKLVPMLNPDGVIVGNTRSSLTGRDLNRQYRTVIRETYPSIWNTKAMIrrlmedcgvaMYCDMHAHSR 482
Cdd:cd06236     93 P-RAIALRRLFVFKLIPMLNPDGVARGHYRTDTRGVNLNRVYLNPDPELHPSIYAAKALL----------FYIDLHAHAS 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  483 KHNVFIYGcenlKRHPDrrLLEQVFPLMLHKNVADK---FSFENCKFKvQKN-----------KEGTGRIVVW-VLGVTN 547
Cdd:cd06236    162 KRGCFIYG----NALED--EEQQVENLLYPKLISLNsahFDFDACNFS-EKNmysrdkrdglsKEGSGRVALYkATGIVH 234
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 2449489716  548 SYTLEASFggstmggragthfstaDYEHIGRAYCETLMDYYDDNP 592
Cdd:cd06236    235 SYTLECNY----------------HFEDVGRALAVALLDMLGCNP 263
M14_PaCCP-like cd06234
Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases similar ...
317-505 1.58e-32

Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases similar to Pseudomonas aerugnosa CCP (PaCCP); A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. This subgroup includes PaCCP from Pseudomonas aeruginosa, a carboxypeptidase homologous to M14D subfamily of human CCPs. Structural complexes with well-known inhibitors of metallocarboxypeptidases indicate that PaCCP might only possess C-terminal hydrolase activity against cellular substrates of particular specificity. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349453 [Multi-domain]  Cd Length: 256  Bit Score: 127.30  E-value: 1.58e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  317 YTYSDLQDYLMCIQRNPvkskFCKLRLLCRSLAGNNVYYLTVTAPTTHeddnqkkKKAVIITARVHPGESPSSWMMKGLM 396
Cdd:cd06234      1 YSYERHLDLVARAQASP----GVRLEVLGQTLDGRDIDLLTIGDPGTG-------KKKVWIIARQHPGETMAEWFMEGLL 69
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  397 DFITGDS-YVAKKLRHKFIFKLVPMLNPDGVIVGNTRSSLTGRDLNRQYRTVIRETYPSIwntkAMIRRLMEDCGVAMYC 475
Cdd:cd06234     70 DRLLDEDdPVSRALLEKAVFYVVPNMNPDGSVRGNLRTNAAGVNLNREWANPSLERSPEV----FAVRQAMDATGVDFFL 145
                          170       180       190
                   ....*....|....*....|....*....|
gi 2449489716  476 DMHAHSRKHNVFIYGCENLKRHPDRRLLEQ 505
Cdd:cd06234    146 DVHGDEALPYNFIAGAEGIPSWTPRLAALE 175
M14_Nna1-like cd03856
Peptidase M14-like domain of ATP/GTP binding proteins, cytosolic carboxypeptidases and related ...
372-585 8.87e-32

Peptidase M14-like domain of ATP/GTP binding proteins, cytosolic carboxypeptidases and related proteins; Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a characteristic N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349429  Cd Length: 252  Bit Score: 125.00  E-value: 8.87e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  372 KKAVIITARVHPGESPSSWMMKGLMDFITGDSYVAKKLRHKFIFKLVPMLNPDGVIVGNTRSSLTGRDLNRQYRTVIRET 451
Cdd:cd03856     43 KSWLFLIARQHPGETTGAWVFFGFLDQLLSDDDPAQQLRAEYNFYIIPMVNPDGVARGHWRTNSRGMDLNRDWHAPDALL 122
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  452 YPSIWNTKA-MIRRLMEDCGVAMYCDMHAHSRkhNVFIYGCEN----LKRHPDR-RLLEQVFplmlhknvADKFSFENCK 525
Cdd:cd03856    123 SPETYAVAAaLAERVQSPEGVVLALDLHGDNR--NVFLTGPDNkdesTNHNPDKlNSLLTET--------DRRLPDYNTE 192
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2449489716  526 FKVQKNKEGT-GRIVVW-VLGVTNSYTLEASFggSTMGGRAGTHFSTADYEHIGRAYCETLM 585
Cdd:cd03856    193 ASPGDNPGGTvGKQWIAdVYQITHSVTLEVGD--NTDRSVASSRYTPGEIELVAKTAATALL 252
MpaA COG2866
Murein tripeptide amidase MpaA [Cell wall/membrane/envelope biogenesis];
317-478 1.41e-25

Murein tripeptide amidase MpaA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442113 [Multi-domain]  Cd Length: 337  Bit Score: 109.39  E-value: 1.41e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  317 YTYSDLQDYLMCIQRNPvksKFCKLRLLCRSLAGNNVYYLTVTaptthedDNQKKKKAVIITARVHPGESPSSWMMKGLM 396
Cdd:COG2866     20 YTYEELLALLAKLAAAS---PLVELESIGKSVEGRPIYLLKIG-------DPAEGKPKVLLNAQQHGNEWTGTEALLGLL 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  397 DFI-TGDSYVAKKLRHKFIFKLVPMLNPDGVIVgNTRSSLTGRDLNRQYRTVIrETYPsiwNTKAMiRRLMEDCGVAMYC 475
Cdd:COG2866     90 EDLlDNYDPLIRALLDNVTLYIVPMLNPDGAER-NTRTNANGVDLNRDWPAPW-LSEP---ETRAL-RDLLDEHDPDFVL 163

                   ...
gi 2449489716  476 DMH 478
Cdd:COG2866    164 DLH 166
Zn_pept smart00631
Zn_pept domain;
317-557 2.08e-20

Zn_pept domain;


Pssm-ID: 214748 [Multi-domain]  Cd Length: 277  Bit Score: 92.78  E-value: 2.08e-20
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716   317 YTYSDLQDYLMCI-QRNPvksKFCKLRLLCRSLAGNNVYYLTVTAPTTHEddnqkkKKAVIITARVHPGESPSSWMMKGL 395
Cdd:smart00631    2 HSYEEIEAWLKELaARYP---DLVRLVSIGKSVEGRPIWVLKISNGGSHD------KPAIFIDAGIHAREWIGPATALYL 72
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716   396 MDFIT---GDSYVAKKLRHKFIFKLVPMLNPDGVIVGNT-----------RSSLTGRDLNRQY-------RTVIRETYP- 453
Cdd:smart00631   73 INQLLenyGRDPRVTNLLDKTDIYIVPVLNPDGYEYTHTgdrlwrknrspNSNCRGVDLNRNFpfhwgetGNPCSETYAg 152
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716   454 ----SIWNTKAMIRRLMEDCGVAMYCDMHAHSRKHNvFIYGCENLKRHPDRRLLEQVFplmlhKNVADKFSFENCKfkvq 529
Cdd:smart00631  153 pspfSEPETKAVRDFIRSNRRFKLYIDLHSYSQLIL-YPYGYTKNDLPPNVDDLDAVA-----KALAKALASVHGT---- 222
                           250       260       270       280
                    ....*....|....*....|....*....|....*....|
gi 2449489716   530 KNKEGTGRIVVW------------VLGVTNSYTLEASFGG 557
Cdd:smart00631  223 RYTYGISNGAIYpasggsddwaygVLGIPFSFTLELRDDG 262
M14_Nna1-like cd06237
Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; ...
335-487 8.66e-18

Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; uncharacterized bacterial subgroup; A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349456 [Multi-domain]  Cd Length: 239  Bit Score: 84.16  E-value: 8.66e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  335 KSKFCKLRLLCRSLAGNNVYYLTVTAPttheddnqKKKKAVIITARVHPGESPSSWMMKGLMDFITGDSYVAKKLRHKFI 414
Cdd:cd06237     12 KKPFVKRSTIGKSVEGRPIEALTIGNP--------DSKELVVLLGRQHPPEVTGALAMQAFVETLLADTELAKAFRARFR 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  415 FKLVPMLNPDGVIVGNTRSSLTGRDLNRQyrtviretypsiWN------TKAM---IRRLMEDCGVAMYCDMHAHSRKHN 485
Cdd:cd06237     84 VLVVPLLNPDGVDLGHWRHNAGGVDLNRD------------WGpftqpeTRAVrdfLLELVEEPGGKVVFGLDFHSTWED 151

                   ..
gi 2449489716  486 VF 487
Cdd:cd06237    152 VF 153
Pepdidase_M14_N pfam18027
Cytosolic carboxypeptidase N-terminal domain; This entry corresponds to the N-terminal domain ...
167-313 1.23e-14

Cytosolic carboxypeptidase N-terminal domain; This entry corresponds to the N-terminal domain of cytosolic carboxypeptidases. The N-terminal domain folds into a nine-stranded antiparallel beta sandwich. This domain is specific to CCP proteins and is absent in other carboxypeptidases. It has been hypothesized that the N-terminal domain might contribute to folding, might have a regulatory function and/or might be involved in binding other proteins.


Pssm-ID: 407865  Cd Length: 107  Bit Score: 70.78  E-value: 1.23e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  167 FESRFESGNLGRAIKITPTYYELYLRPDmYTNRHTQWFYFQVKNTkAKVVYRFSIINLTKpdSLYKEGMRPLmysTMDAE 246
Cdd:pfam18027    1 ISSNFDSGNIEVVSASDPDAIRLRIRPD-NGSEHFQWFYFRVSGA-RGRPLTFVIENAGE--ASYPDGWTGY---RVVAS 73
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2449489716  247 CNQVGWRRCGdniAYFRNEdnsngynyshyhhrpvdddedeyigtssfTLSFNieFKYDGDTVYFAH 313
Cdd:pfam18027   74 YDRENWFRVP---TEYDGG-----------------------------VLTIT--HTPEADTVYFAY 106
Peptidase_M14 pfam00246
Zinc carboxypeptidase;
346-560 1.64e-14

Zinc carboxypeptidase;


Pssm-ID: 459730 [Multi-domain]  Cd Length: 287  Bit Score: 75.41  E-value: 1.64e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  346 RSLAGNNVYYLTVTAPTThedDNQKKKKAVIITARVHPGESPSS----WMMKGLMDFITGDSYVaKKLRHKFIFKLVPML 421
Cdd:pfam00246   23 KSVEGRPLKVLKISSGPG---EHNPGKPAVFIDGGIHAREWIGPatalYLIHQLLTNYGRDPEI-TELLDDTDIYILPVV 98
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  422 NPDGVIVGNT-------------RSSLTGRDLNRQY----------RTVIRETY-----PSIWNTKAMIRRLMEDCGVAM 473
Cdd:pfam00246   99 NPDGYEYTHTtdrlwrknrsnanGSSCIGVDLNRNFpdhwnevgasSNPCSETYrgpapFSEPETRAVADFIRSKKPFVL 178
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  474 YCDMHAHSRKHNvFIYGCENLKRHPDRRLLEQV---FPLMLHKNVADKFSFENCkFKVQKNKEGTGRIVVWV---LGVTN 547
Cdd:pfam00246  179 YISLHSYSQVLL-YPYGYTRDEPPPDDEELKSLaraAAKALQKMVRGTSYTYGI-TNGATIYPASGGSDDWAygrLGIKY 256
                          250
                   ....*....|...
gi 2449489716  548 SYTLEASFGGSTM 560
Cdd:pfam00246  257 SYTIELRDTGRYG 269
M14_Nna1-like cd18429
Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; ...
368-444 2.78e-10

Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; uncharacterized bacterial subgroup; A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.


Pssm-ID: 349485  Cd Length: 253  Bit Score: 62.09  E-value: 2.78e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2449489716  368 NQKKKKAVIITARVHPGESPSSWMMKGLMD-FITGDSyVAKKLRHKFIFKLVPMLNPDGVIVGNTRSSLTGRDLNRQY 444
Cdd:cd18429     36 NESAPHRVFLRARAHPWEAGGNWVVEGLVErLLQNDE-EAKRFLKRYCVYILPMANKDGVARGRTRFNANGKDLNREW 112
M14_CP_A-B_like cd03860
Peptidase M14 carboxypeptidase subfamily A/B-like; The Peptidase M14 Carboxypeptidase (CP) A/B ...
357-481 2.12e-06

Peptidase M14 carboxypeptidase subfamily A/B-like; The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues.


Pssm-ID: 349433 [Multi-domain]  Cd Length: 300  Bit Score: 50.99  E-value: 2.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  357 TVTAPTTHE-----------DDNQKKKKAVIITARVHPGE--SPSS--WMMKGLMDFiTGDSYVAKKLRHKFIFKLVPML 421
Cdd:cd03860     24 IFTIGKSYEgrditgihiwgSGGKGGKPAIVIHGGQHAREwiSTSTveYLAHQLLSG-YGSDATITALLDKFDFYIIPVV 102
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  422 NPDGVIV-------------GNTRSSLTGRDLNRQY----------RTVIRETYP-----SIWNTKAM---IRRLMEDCG 470
Cdd:cd03860    103 NPDGYVYtwttdrlwrknrqPTGGSSCVGIDLNRNWgykwggpgasTNPCSETYRgpsafSAPETKALadfINALAAGQG 182
                          170
                   ....*....|.
gi 2449489716  471 VAMYCDMHAHS 481
Cdd:cd03860    183 IKGFIDLHSYS 193
M14_REP34-like cd06231
Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34); This family ...
372-446 1.28e-05

Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34); This family includes Francisella tularensis protein rapid encystment phenotype 34 (REP34) which is a zinc-containing monomeric protein demonstrating carboxypeptidase B-like activity. REP34 possesses a novel topology with its substrate binding pocket deviating from the canonical M14 peptidases with a possible catalytic role for a conserved tyrosine and distinct S1' recognition site. Thus, REP34, identified as an active carboxypeptidase and a potential key F. tularensis effector protein, may help elucidate a mechanistic understanding of F. tularensis infection of phagocytic cells. A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349450 [Multi-domain]  Cd Length: 239  Bit Score: 48.07  E-value: 1.28e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2449489716  372 KKAVIITARVHpGESPSS-WmmkGLMDFItgDSYVAKKLRHkFIFKLVPMLNPDGvIVGNTRSSLTGRDLNRQYRT 446
Cdd:cd06231     42 KPRVLISAGIH-GDEPAGvE---ALLRFL--ESLAEKYLRR-VNLLVLPCVNPWG-FERNTRENADGIDLNRSFLK 109
M14-like cd03857
Peptidase M14-like domain; uncharacterized subfamily; Peptidase M14-like domain of a ...
375-455 9.68e-05

Peptidase M14-like domain; uncharacterized subfamily; Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349430 [Multi-domain]  Cd Length: 203  Bit Score: 44.76  E-value: 9.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  375 VIITARVHPGESPSSwmmKGLMDFI---TGDSYVAKKLRHKFIFKLVPMLNPDG------------VIVGNTRSSLTGRD 439
Cdd:cd03857      2 VLLAAQIHGNETTGT---EALMELIrdlASESDEAAKLLDNIVILLVPQLNPDGaelfvnfyldsmNGLPGTRYNANGID 78
                           90       100
                   ....*....|....*....|....*..
gi 2449489716  440 LNR-----------QYRTVIRETYPSI 455
Cdd:cd03857     79 LNRdhvkltqpetqAVAENFIHWWPDI 105
M14-like cd06905
Peptidase M14-like domain; uncharacterized subfamily; A functionally uncharacterized subgroup ...
317-445 5.69e-04

Peptidase M14-like domain; uncharacterized subfamily; A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349476 [Multi-domain]  Cd Length: 359  Bit Score: 43.37  E-value: 5.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  317 YTYSDLQDYLMCIQR-NPvksKFCKLRLLCRSLAGNNVYYLTVTAPTThedDNQKKKKAVIITARVHPGESPSS----WM 391
Cdd:cd06905      7 YTYAELTARLKALAEaYP---NLVRLESIGKSYEGRDIWLLTITNGET---GPADEKPALWVDGNIHGNEVTGSevalYL 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2449489716  392 MKGLMDFITGDSYVAKKLRHKFIFkLVPMLNPDgvivGNTRSSL-TGRDLNRQYR 445
Cdd:cd06905     81 AEYLLTNYGKDPEITRLLDTRTFY-ILPRLNPD----GAEAYKLkTERSGRSSPR 130
M14_CPT cd03859
Peptidase M14 Carboxypeptidase T subfamily; Peptidase M14-like domain of carboxypeptidase (CP) ...
307-444 1.43e-03

Peptidase M14 Carboxypeptidase T subfamily; Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.


Pssm-ID: 349432 [Multi-domain]  Cd Length: 292  Bit Score: 41.86  E-value: 1.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  307 DTVYfaHSYPYTYSDLQDYlmcIQRNPVkskFCKLRLLCRSLAGNNVYYLTVTAPTTHEDDnqkkKKAVIITARVHPGES 386
Cdd:cd03859      1 DGGY--HTYAELVAELDQL---AAEYPE---ITKLISIGKSVEGRPIWAVKISDNPDEDED----EPEVLFMGLHHAREW 68
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2449489716  387 PSSWMMKGLMDFITG----DSYVAKKLRHKFIFkLVPMLNPDGVIV-----------------GNTRSSLTGRDLNRQY 444
Cdd:cd03859     69 ISLEVALYFADYLLEnygtDPRITNLVDNREIW-IIPVVNPDGYEYnretgggrlwrknrrpnNGNNPGSDGVDLNRNY 146
Peptidase_M14_like cd00596
M14 family of metallocarboxypeptidases and related proteins; The M14 family of ...
375-446 5.22e-03

M14 family of metallocarboxypeptidases and related proteins; The M14 family of metallocarboxypeptidases (MCPs), also known as funnelins, are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.


Pssm-ID: 349427 [Multi-domain]  Cd Length: 216  Bit Score: 39.75  E-value: 5.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2449489716  375 VIITARVHPGESPSSWMMKGLMDFITGDSYvakKLRHKFIFK-----LVPMLNPDG---VIVGNTRSSLTGRDLNRQYRT 446
Cdd:cd00596      1 ILITGGIHGNEVIGVELALALIEYLLENYG---NDPLKRLLDnvelwIVPLVNPDGfarVIDSGGRKNANGVDLNRNFPY 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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