|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
13-98 |
2.13e-29 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 111.60 E-value: 2.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 13 LDAEFDHFVVDMKPFVLKLPHRTERQRCALWIRKLCEPSGTgagIMGRKNRNLYAKLLLHMLKRGALEGPFTHRPEPGTL 92
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 2462553653 93 KILPSY 98
Cdd:pfam14846 78 PPLPEF 83
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
421-719 |
3.56e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 3.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 421 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEhalsA 500
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKD----L 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 501 SKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyEKKAHDLQSELDKGKEDTQkkihKFEEALK 580
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-----EAEIEELEAQIEQLKEELK----ALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 581 EKEEQLTRVTE-----VQRLQAQQADAALEEfKRQVELNSEKvyAEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIR 655
Cdd:TIGR02168 807 ELRAELTLLNEeaanlRERLESLERRIAATE-RRLEDLEEQI--EELSEDIESLAAEIEELEELIEELESE-LEALLNER 882
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462553653 656 QRYEQQIVELKLEHEQekthlLQQHNAEKDSLVRDHEREIENLEKQLRAANM---EHENQIQEFKKR 719
Cdd:TIGR02168 883 ASLEEALALLRSELEE-----LSEELRELESKRSELRRELEELREKLAQLELrleGLEVRIDNLQER 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
402-734 |
1.15e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 402 AQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLL 481
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 482 QTKYDADINLLKQEHALSA--SKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQS 559
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEErlEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 560 ELDKgKEDTQKKIHKFEEALKEKEEQLTRVTEVQRlqaqQADAALEEFKRQVELNSeKVYAEMKEQMEKVEADL-TRSKS 638
Cdd:TIGR02168 829 LERR-IAATERRLEDLEEQIEELSEDIESLAAEIE----ELEELIEELESELEALL-NERASLEEALALLRSELeELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 639 LREKQSKefLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQ-----------------QHNAEKDSLVRDHEREIENLEKQ 701
Cdd:TIGR02168 903 LRELESK--RSELRRELEELREKLAQLELRLEGLEVRIDNlqerlseeysltleeaeALENKIEDDEEEARRRLKRLENK 980
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2462553653 702 LRA---ANMEHENQIQEFKKR----DAQ------ASKKLLGILAEI 734
Cdd:TIGR02168 981 IKElgpVNLAAIEEYEELKERydflTAQkedlteAKETLEEAIEEI 1026
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
238-742 |
1.60e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 238 LRKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTL--YRSKQHETEETIRK 315
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 316 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQS-TESLNNDWEKKLHNAVAEMEQEKF---DLQKQHTENIQELLEDTNV 391
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAKKKAEEKKkadEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 392 RLNKMESEYMAQTQSTNHMIKELEARVQQ------LTGEAENS----NLQRQKLIQEKAELERCYQITCSELQEVKARRN 461
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEakkadeAKKKAEEAkkaeEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 462 TLHKEKDHLVNDYEQNMKLLQTKYDADI----NLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK--QQLRDQ 535
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAkkadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 536 ENKFQMEK--SHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEAlKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL 613
Cdd:PTZ00121 1574 EDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 614 NSE----KVYAEM---KEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQqiVELKLEHEQEKTHLLQQHNAEKDS 686
Cdd:PTZ00121 1653 KKAeeenKIKAAEeakKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE--LKKKEAEEKKKAEELKKAEEENKI 1730
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553653 687 LVRDHEREIENLEKQLRAANMEHE--NQIQEFKKRDAQASKKLLGILAEIISEKVLDE 742
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAKKDEEekKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
285-645 |
2.03e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 285 QKILERKNnEIEELktlyRSKQHETEETIRKLEKKVQTLirdcQVIRETKEDQIAELKKICEQSTESLNNdwekklhnav 364
Cdd:TIGR02168 670 SSILERRR-EIEEL----EEKIEELEEKIAELEKALAEL----RKELEELEEELEQLRKELEELSRQISA---------- 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 365 AEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELER 444
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 445 CYQITCSELQEVKARRntlhkekdhlvNDYEQNMKLLQTKydadINLLKQEHALSASKASSMIEELEQnvCQLKQQLQES 524
Cdd:TIGR02168 811 ELTLLNEEAANLRERL-----------ESLERRIAATERR----LEDLEEQIEELSEDIESLAAEIEE--LEELIEELES 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 525 ELQRKQQLRDQENKfqmekshlkhiYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVtevqRLQAQQADAAL 604
Cdd:TIGR02168 874 ELEALLNERASLEE-----------ALALLRSELEELSEELRELESKRSELRRELEELREKLAQL----ELRLEGLEVRI 938
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2462553653 605 EEFKRQVelnSEKVYAEMKEQMEKVEADLTRSKSLREKQSK 645
Cdd:TIGR02168 939 DNLQERL---SEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
270-641 |
3.90e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 270 HEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKL---EKKVQTLIRDCQVIRETKEDQIAELKKICE 346
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 347 QSTEslNNDWEKKLHNAVAEMEQEKFDLQKQhTENIQELLEDTNVRLNKMESEYmaqtQSTNHMIKELEARVQQLTGEAE 426
Cdd:TIGR02168 762 EIEE--LEERLEEAEEELAEAEAEIEELEAQ-IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 427 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDY---EQNMKLLQTKYDadinllkqehalsasKA 503
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELE---------------EL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 504 SSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKE 583
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462553653 584 EQLTRVTEVQRlqaqqadAALEEFKRQvelnsEKVYAEMKEQMEkveaDLTRSK-SLRE 641
Cdd:TIGR02168 979 NKIKELGPVNL-------AAIEEYEEL-----KERYDFLTAQKE----DLTEAKeTLEE 1021
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
280-738 |
5.86e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.39 E-value: 5.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 280 HDADVQKI---LERKNNEIEELKTLYRSKQH------ETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTE 350
Cdd:pfam12128 232 AIAGIMKIrpeFTKLQQEFNTLESAELRLSHlhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELS 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 351 SLNNDWEKKLHNAVAEMEQ----EKFDLQKQHTEniQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQ------- 419
Cdd:pfam12128 312 AADAAVAKDRSELEALEDQhgafLDADIETAAAD--QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkikeqnn 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 420 -QLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEhAL 498
Cdd:pfam12128 390 rDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-EN 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 499 SASKASSMIEELEQnvCQLKQQLQESELQRKQQLRDQEN-----------KFQMEKSHLKHIYEKKAHDLQSELDKGKED 567
Cdd:pfam12128 469 FDERIERAREEQEA--ANAEVERLQSELRQARKRRDQASealrqasrrleERQSALDELELQLFPQAGTLLHFLRKEAPD 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 568 TQKKIHK---------------FEEALKEKEEQLTRVT-EVQRLQAQQADAALEEFKRQVElNSEKVYAEMKEQMEKVEA 631
Cdd:pfam12128 547 WEQSIGKvispellhrtdldpeVWDGSVGGELNLYGVKlDLKRIDVPEWAASEEELRERLD-KAEEALQSAREKQAAAEE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 632 DLTRSKSLREKQSKEflwqLEDIRQRYEQ---QIVELKLEHEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANME 708
Cdd:pfam12128 626 QLVQANGELEKASRE----ETFARTALKNarlDLRRLFDEKQSEKDKKNKALAERKDSA----NERLNSLEAQLKQLDKK 697
|
490 500 510
....*....|....*....|....*....|
gi 2462553653 709 HENQIQEFKKRDAQASKKLLGILAEIISEK 738
Cdd:pfam12128 698 HQAWLEEQKEQKREARTEKQAYWQVVEGAL 727
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-693 |
7.65e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 7.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 302 YRSKQHETEetiRKLEKKVQTLIRDCQVIRETKEdQIAELKKICEQSteslnndweKKLHNAVAEMEQEKFDLQKQHTEN 381
Cdd:TIGR02168 170 YKERRKETE---RKLERTRENLDRLEDILNELER-QLKSLERQAEKA---------ERYKELKAELRELELALLVLRLEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 382 IQELLEDTNVRLNKMESEymaqtqstnhmIKELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqitcSELQEVKARRN 461
Cdd:TIGR02168 237 LREELEELQEELKEAEEE-----------LEELTAELQELEEKLEELRLEVSELEEEIEELQ-------KELYALANEIS 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 462 TLHKEKDHlvndYEQNMKLLQTKYDadinllkqehalsasKASSMIEELEQNvcqlKQQLQESELQRKQQLRDQENKFQM 541
Cdd:TIGR02168 299 RLEQQKQI----LRERLANLERQLE---------------ELEAQLEELESK----LDELAEELAELEEKLEELKEELES 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 542 EKSHLkhiyeKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtEVQRLQAQQADAALEEFKRQVELNSEKVYAE 621
Cdd:TIGR02168 356 LEAEL-----EELEAELEELESRLEELEEQLETLRSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462553653 622 MKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYE--QQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHER 693
Cdd:TIGR02168 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEelREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
271-738 |
3.98e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 3.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 271 EEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTE 350
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 351 SLNND-WEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNvRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSN 429
Cdd:COG1196 402 LEELEeAEEALLERLERLEEELEELEEALAELEEEEEEEEE-ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 430 LQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADI-----NLLKQEHALSASKAS 504
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALeaalaAALQNIVVEDDEVAA 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 505 SMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHD----LQSELDKGKEDTQKKIHKFEEALK 580
Cdd:COG1196 561 AAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADaryyVLGDTLLGRTLVAARLEAALRRAV 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 581 EKEEQLTRVT----------EVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQ 650
Cdd:COG1196 641 TLAGRLREVTlegeggsaggSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 651 LEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL----VRDHEREIENLEKQLR-------AANMEHENQIQEFKKR 719
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPeppdLEELERELERLEREIEalgpvnlLAIEEYEELEERYDFL 800
|
490 500
....*....|....*....|....*
gi 2462553653 720 DAQ------ASKKLLGILAEIISEK 738
Cdd:COG1196 801 SEQredleeARETLEEAIEEIDRET 825
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
256-669 |
6.66e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 6.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 256 KELD---MKTKMMEAKFHEEKLKLQQKHDADVQKIlERKNNEIEELKTLyRSKQHETEETIRKLEKKVQTLIRDCQVIRE 332
Cdd:pfam15921 419 RELDdrnMEVQRLEALLKAMKSECQGQMERQMAAI-QGKNESLEKVSSL-TAQLESTKEMLRKVVEELTAKKMTLESSER 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 333 TKEDQIAELKKIcEQSTESLNNDWEKKlhnavaemeQEKFDLQKQHTENIQEllEDTNVRLNKMESEYMA-QTQSTNHMI 411
Cdd:pfam15921 497 TVSDLTASLQEK-ERAIEATNAEITKL---------RSRVDLKLQELQHLKN--EGDHLRNVQTECEALKlQMAEKDKVI 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 412 KELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVK--------------ARRNTLHKEKDHLVNDYEQN 477
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdakireleARVSDLELEKVKLVNAGSER 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 478 MKLLQTKYDADINLLkQEHALSASKASSMIEE---LEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKA 554
Cdd:pfam15921 645 LRAVKDIKQERDQLL-NEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDG 723
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 555 HDLQSELDKGKEDT---------QKKIHKFEEALKE--KEEQLTRvTEVQRLQAQQADAALEEFKRQVELNSekvyaeMK 623
Cdd:pfam15921 724 HAMKVAMGMQKQITakrgqidalQSKIQFLEEAMTNanKEKHFLK-EEKNKLSQELSTVATEKNKMAGELEV------LR 796
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2462553653 624 EQMEKVEADLTRSKSLREKQSKEFLwQLEDIRQRYEQQIVELKLEH 669
Cdd:pfam15921 797 SQERRLKEKVANMEVALDKASLQFA-ECQDIIQRQEQESVRLKLQH 841
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
411-738 |
9.74e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 9.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 411 IKELEARVQQLTGEAENSnLQRQKLIQEKAELERCYQItcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADIN 490
Cdd:COG1196 195 LGELERQLEPLERQAEKA-ERYRELKEELKELEAELLL--LKLRELEAELEELEAELEELEAELEELEAELAEL-EAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 491 LLKQEHalsaskassmiEELEQNVcqlkQQLQESELQRKQQLrdqenkfqmekshlkhiyekkahdlqSELDKGKEDTQK 570
Cdd:COG1196 271 ELRLEL-----------EELELEL----EEAQAEEYELLAEL--------------------------ARLEQDIARLEE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 571 KIHKFEEALKEKEEQLtrvtEVQRLQAQQADAALEEFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEflwq 650
Cdd:COG1196 310 RRRELEERLEELEEEL----AELEEELEELEEELEELEEELE-EAEEELEEAEAELAEAEEALLEAEAELAEAEEE---- 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 651 lediRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAnmEHENQIQEFKKRDAQASKKLLGI 730
Cdd:COG1196 381 ----LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA--ELEEEEEEEEEALEEAAEEEAEL 454
|
....*...
gi 2462553653 731 LAEIISEK 738
Cdd:COG1196 455 EEEEEALL 462
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
497-726 |
1.12e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 497 ALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHI--YEKKAHDLQSELDKGKE---DTQKK 571
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELAALEAelaELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 572 IHKFEEALKEKEEQL-TRVTEVQRLQAQQADAAL------EEFKRQVELnSEKVYAEMKEQMEKVEADLTRSKSLREKQS 644
Cdd:COG4942 92 IAELRAELEAQKEELaELLRALYRLGRQPPLALLlspedfLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 645 KEfLWQLEDIRQRYEQQIVELKLEhEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRaanmEHENQIQEFKKRDAQAS 724
Cdd:COG4942 171 AE-RAELEALLAELEEERAALEAL-KAERQKLLARLEKELAEL----AAELAELQQEAE----ELEALIARLEAEAAAAA 240
|
..
gi 2462553653 725 KK 726
Cdd:COG4942 241 ER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
288-631 |
1.23e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 288 LERKNNEIEELKTLYRSKQhETEETIRKLEKKvqTLIRDcqviRETKEDQIAELKKICEQSTESLNnDWEKKLHNAVAEM 367
Cdd:TIGR02169 203 LRREREKAERYQALLKEKR-EYEGYELLKEKE--ALERQ----KEAIERQLASLEEELEKLTEEIS-ELEKRLEEIEQLL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 368 EQEkfdlqkqhTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyq 447
Cdd:TIGR02169 275 EEL--------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER--- 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 448 itcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEHALSASKASSMIEELEQNVCQLKQqLQESELQ 527
Cdd:TIGR02169 344 ----EIEEERKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKREINELKRELDR-LQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 528 RKQQLRDQENKfqmekshLKHIYEKKAhdlqsELDKGKEDTQKKIhkfeealKEKEEQLtrvtevQRLQAQQADAALEEF 607
Cdd:TIGR02169 418 LSEELADLNAA-------IAGIEAKIN-----ELEEEKEDKALEI-------KKQEWKL------EQLAADLSKYEQELY 472
|
330 340
....*....|....*....|....*
gi 2462553653 608 KRQVELNS-EKVYAEMKEQMEKVEA 631
Cdd:TIGR02169 473 DLKEEYDRvEKELSKLQRELAEAEA 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
250-742 |
1.34e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 250 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 329
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 330 IRETkEDQIAELKKICEQSTESLNNDWEKK--LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQST 407
Cdd:COG1196 311 RREL-EERLEELEEELAELEEELEELEEELeeLEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 408 NHM--IKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNDYEQnmklLQTKY 485
Cdd:COG1196 390 EALraAAELAAQLEELEEAEEALLERLERLEEELEELEE-------ALAELEEEEEEEEEALEEAAEEEAE----LEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 486 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 565
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 566 ED-------TQKKIHKFEEALKE-----KEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADL 633
Cdd:COG1196 539 ALeaalaaaLQNIVVEDDEVAAAaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 634 TRSKSLRE-KQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQ 712
Cdd:COG1196 619 GDTLLGRTlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510
....*....|....*....|....*....|
gi 2462553653 713 IQEFKKRDAQASKKLLGILAEIISEKVLDE 742
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEE 728
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
272-736 |
1.38e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 272 EKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTES 351
Cdd:pfam12128 340 ETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQA 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 352 LNNDWEKKLHNAVAEMEQEKFDL------------QKQHTENIQELLEDTNVRLNKMESEymaQTQSTnhmiKELEARVQ 419
Cdd:pfam12128 420 LESELREQLEAGKLEFNEEEYRLksrlgelklrlnQATATPELLLQLENFDERIERAREE---QEAAN----AEVERLQS 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 420 QLTGEAENSNLQRQKLIQEKAELERcYQITCSELQEV-KARRNTLHKEKDHLVNDYEQNM-------KLLQTKYDADIN- 490
Cdd:pfam12128 493 ELRQARKRRDQASEALRQASRRLEE-RQSALDELELQlFPQAGTLLHFLRKEAPDWEQSIgkvispeLLHRTDLDPEVWd 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 491 -LLKQE----------HALSASKASSMIEELEQNVCQLKQQLQ-ESELQRKQ-----QLRDQENKFQMEKSHLKHIYEKK 553
Cdd:pfam12128 572 gSVGGElnlygvkldlKRIDVPEWAASEEELRERLDKAEEALQsAREKQAAAeeqlvQANGELEKASREETFARTALKNA 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 554 AHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADL 633
Cdd:pfam12128 652 RLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQL 731
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 634 TR---SKSLREKQSKEFLWQLEDIRQR--------------YEQQIVEL--------KLEHEQEKTHLLQQHN--AEKDS 686
Cdd:pfam12128 732 ALlkaAIAARRSGAKAELKALETWYKRdlaslgvdpdviakLKREIRTLerkieriaVRRQEVLRYFDWYQETwlQRRPR 811
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 2462553653 687 L---VRDHEREIENLEKQLRAANMEHENQIQEFkKRDAQASKKLLGILAEIIS 736
Cdd:pfam12128 812 LatqLSNIERAISELQQQLARLIADTKLRRAKL-EMERKASEKQQVRLSENLR 863
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
257-738 |
2.50e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 257 ELDMKTKMMEAKFHEEKLKLQQKHDADVQKILE----------RKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRD 326
Cdd:TIGR00618 315 ELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLqtlhsqeihiRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQK 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 327 CQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQs 406
Cdd:TIGR00618 395 LQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQ- 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 407 tnhmikeLEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQE--------------VKARRNTLHKEKDHLVN 472
Cdd:TIGR00618 474 -------QLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNParqdidnpgpltrrMQRGEQTYAQLETSEED 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 473 DYEQNMKLLQ--TKYDADINLLKQEHALSASKASSMIEELE--QNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKH 548
Cdd:TIGR00618 547 VYHQLTSERKqrASLKEQMQEIQQSFSILTQCDNRSKEDIPnlQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 549 IYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEF---KRQVELNSEKVyAEMKEQ 625
Cdd:TIGR00618 627 LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMqseKEQLTYWKEML-AQCQTL 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 626 MEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNaekdslvrDHEREIENLEKQL-RA 704
Cdd:TIGR00618 706 LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTE--------AHFNNNEEVTAALqTG 777
|
490 500 510
....*....|....*....|....*....|....
gi 2462553653 705 ANMEHENQIQEFKKRDAQASKKLLGILAEIISEK 738
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
273-600 |
2.64e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 2.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 273 KLKLQQKHDADVQKILERKNNEIEELKTlyrsKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAElkkiceqstesl 352
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEA----ELEELEAELAELEAELEELRLELEELELELEEAQAE------------ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 353 nndwEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQstnhmIKELEARVQQLTGEAENSNLQR 432
Cdd:COG1196 290 ----EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-----LEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 433 QKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEq 512
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE- 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 513 nvcqlkqQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEV 592
Cdd:COG1196 440 -------EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
....*...
gi 2462553653 593 QRLQAQQA 600
Cdd:COG1196 513 ALLLAGLR 520
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
251-718 |
3.17e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 3.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDAD-VQKILERKNNEIEELKtlyrsKQHETEETIRKLEKKVQTLIRDCQV 329
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADeAKKKAEEDKKKADELK-----KAAAAKKKADEAKKKAEEKKKADEA 1436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 330 IRETKEDQIA-ELKKICEQSTESLNndWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTN 408
Cdd:PTZ00121 1437 KKKAEEAKKAdEAKKKAEEAKKAEE--AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 409 HMIKELEARVQQLTGEAENSNLQRQKLIQEK---------AELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMK 479
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKkkadelkkaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 480 LLQTKYDADINLLKQEHALSASKASSMIEEL-----EQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYE--- 551
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkaeeEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEedk 1674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 552 KKAHDLQ---------SELDKGKEDTQKK---IHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVElnSEKVY 619
Cdd:PTZ00121 1675 KKAEEAKkaeedekkaAEALKKEAEEAKKaeeLKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE--EAKKD 1752
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 620 AEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLE 699
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
|
490
....*....|....*....
gi 2462553653 700 KQLRAANMEHENQIQEFKK 718
Cdd:PTZ00121 1833 KEVADSKNMQLEEADAFEK 1851
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
314-676 |
3.99e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 50.29 E-value: 3.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 314 RKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEK--KLHNAVAEMEQEKFDLQKqhtENIQELLEDTNV 391
Cdd:PLN02939 48 KKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSsdDDHNRASMQRDEAIAAID---NEQQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 392 RLNKMESEYMAQTQSTNHMIKEL-EARVQQLtGEAEnsnlqrqKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHL 470
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAEKNILLLnQARLQAL-EDLE-------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 471 VNDYEQNMKLLqtkydadiNLLKQEHALSASKASSMIEEL----EQNVcQLKQQLQESELQRKQQLRDQENKFQMEKSHl 546
Cdd:PLN02939 197 EILEEQLEKLR--------NELLIRGATEGLCVHSLSKELdvlkEENM-LLKDDIQFLKAELIEVAETEERVFKLEKER- 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 547 kHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE---EFKRQVE-----LNSEKV 618
Cdd:PLN02939 267 -SLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDqnqDLRDKVDkleasLKEANV 345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462553653 619 YAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLedirQRYEQQIVEL-----KLEHEQEKTHL 676
Cdd:PLN02939 346 SKFSSYKVELLQQKLKLLEERLQASDHEIHSYI----QLYQESIKEFqdtlsKLKEESKKRSL 404
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
255-726 |
4.77e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 255 EKELDMKTKMMEAKFHEEKLKLQQKhdadvqkilERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETK 334
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEE---------ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 335 EDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEY-MAQTQSTNHMIKE 413
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 414 LEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYEQNMKLLQTKYDADINLLK 493
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 494 QEHALSASKASSMIEElEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIH 573
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEE-AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 574 ---KFEEALKEKE----EQLTRVTEVQRlqAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSK- 645
Cdd:PTZ00121 1532 eakKADEAKKAEEkkkaDELKKAEELKK--AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKa 1609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 646 EFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQASK 725
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
.
gi 2462553653 726 K 726
Cdd:PTZ00121 1690 A 1690
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
285-701 |
5.72e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 5.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 285 QKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRET------KEDQIAELKKICEQSTESLNNDWEK 358
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkkikeLEKQLNQLKSEISDLNNQKEQDWNK 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 359 KLHNAVAEMEQEKFDLQKQHTENIQEL--LEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLI 436
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIIsqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 437 QEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYeQNMKLLQTKYDADI-NLLKQEHALSASkassmIEELEQNVC 515
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI-ERLKETIIKNNSEIkDLTNQDSVKELI-----IKNLDNTRE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 516 QLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSeldkgkEDTQKKIHKFEEALKEKEEQLTrvTEVQRL 595
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKEL------EEKVKDLTKKISSLKEKIEKLE--SEKKEK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 596 QAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSkeflwQLEDIRQRYEQQIVELKLEHEqekth 675
Cdd:TIGR04523 537 ESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQE-----EKQELIDQKEKEKKDLIKEIE----- 606
|
410 420
....*....|....*....|....*.
gi 2462553653 676 llqqhnaEKDSLVRDHEREIENLEKQ 701
Cdd:TIGR04523 607 -------EKEKKISSLEKELEKAKKE 625
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
238-722 |
5.79e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 5.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 238 LRKSSSFHDDHFLSrIREKELDMKTKMMEAKFHEEKL----KLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETI 313
Cdd:pfam15921 94 LNESNELHEKQKFY-LRQSVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 314 RKLEKKVQTLIRDCQVIRETKED-QIAELKKICEQstESLNNDWEKKLHNAVAEM------------------------- 367
Cdd:pfam15921 173 EQLRKMMLSHEGVLQEIRSILVDfEEASGKKIYEH--DSMSTMHFRSLGSAISKIlreldteisylkgrifpvedqleal 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 368 ---EQEKFDLQ-KQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEarVQQLTGEAENSNLQRQkliqeKAELE 443
Cdd:pfam15921 251 kseSQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE--IIQEQARNQNSMYMRQ-----LSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 444 RCYQITCSELQEVKarrnTLHKEKdhlVNDYEQNMKLLqtkyDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQE 523
Cdd:pfam15921 324 STVSQLRSELREAK----RMYEDK---IEELEKQLVLA----NSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 524 SELQRKQQLR--DQENKFQMEKSHLKHIYEKKAHDLQ---SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVqrlqAQ 598
Cdd:pfam15921 393 LSLEKEQNKRlwDRDTGNSITIDHLRRELDDRNMEVQrleALLKAMKSECQGQMERQMAAIQGKNESLEKVSSL----TA 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 599 QADAALEEFKRQV-ELNSEKVYAemkEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELK--------LEH 669
Cdd:pfam15921 469 QLESTKEMLRKVVeELTAKKMTL---ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegdhLRN 545
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462553653 670 EQEKTHLLQQHNAEKDSLVRDHEREIENLEK------------QLRAANMEHE-----NQIQEFK----KRDAQ 722
Cdd:pfam15921 546 VQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagamQVEKAQLEKEindrrLELQEFKilkdKKDAK 619
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
251-703 |
6.50e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 6.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYrSKQHETEETIRKLEKKVQTLIRDCQVI 330
Cdd:TIGR00606 716 SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI-EEQETLLGTIMPEEESAKVCLTDVTIM 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 331 RETKEDQIAELKKICEQSTESLNNDwekkLHNAVAEMEQEKFDLQKQHTENIQELLEdtnvrLNKMESEYMAQTQSTNHM 410
Cdd:TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSD----LDRTVQQVNQEKQEKQHELDTVVSKIEL-----NRKLIQDQQEQIQHLKSK 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 411 IKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHK---EKDHLVNDYEQNMKLLQTKYDA 487
Cdd:TIGR00606 866 TNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKdqqEKEELISSKETSNKKAQDKVND 945
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 488 DINLLKQEHALSASkassmIEELEQNVCQLKQQLQESELQR--KQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 565
Cdd:TIGR00606 946 IKEKVKNIHGYMKD-----IENKIQDGKDDYLKQKETELNTvnAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDN 1020
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 566 EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVeadLTRSKSLREKqsk 645
Cdd:TIGR00606 1021 LTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEI---KHFKKELREP--- 1094
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553653 646 eflwQLEDIRQRYEQQIVELKLEHEQEKThLLQQHNAEKDSLVRDHEREIENLEKQLR 703
Cdd:TIGR00606 1095 ----QFRDAEEKYREMMIVMRTTELVNKD-LDIYYKTLDQAIMKFHSMKMEEINKIIR 1147
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
255-722 |
1.11e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 255 EKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETK 334
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 335 EDQ--IAELKKICEQSTESlnNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDtnvrlnKMESEYMAQTQSTNHMIK 412
Cdd:PTZ00121 1415 AAKkkADEAKKKAEEKKKA--DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE------AKKADEAKKKAEEAKKAD 1486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 413 ELEARVQQLTGEAENsnLQRQKLIQEKAELERcyqiTCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLL 492
Cdd:PTZ00121 1487 EAKKKAEEAKKKADE--AKKAAEAKKKADEAK----KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 493 KQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKI 572
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 573 HKFEEA-----LKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEF 647
Cdd:PTZ00121 1641 KEAEEKkkaeeLKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462553653 648 LWQLEDIRQRYEQQIvELKLEHEQEKTHLLQQHNAEKDSLVRDHEREienlEKQLRAANMEHENQIQE-FKKRDAQ 722
Cdd:PTZ00121 1721 LKKAEEENKIKAEEA-KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE----EKKAEEIRKEKEAVIEEeLDEEDEK 1791
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
437-737 |
2.43e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 437 QEKAELERCYQitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKydadinllkqehalsASKASSMIEELEQNVCQ 516
Cdd:TIGR02169 671 SEPAELQRLRE----RLEGLKRELSSLQSELRRI----ENRLDELSQE---------------LSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 517 LKQQlQESELQRKQQLRDQENKFQMEKSHLKhiyekkahDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVtevqrlQ 596
Cdd:TIGR02169 728 LEQE-EEKLKERLEELEEDLSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARLSHS------R 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 597 AQQADAALEEFKRQVELNSEKVyaemkEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQR---YEQQIVELKLEHEQEK 673
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARL-----REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQiksIEKEIENLNGKKEELE 867
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462553653 674 THLLQQHNAEKD--SLVRDHEREIENLEKQLRAANM---EHENQIQEFKKRDAQASKKlLGILAEIISE 737
Cdd:TIGR02169 868 EELEELEAALRDleSRLGDLKKERDELEAQLRELERkieELEAQIEKKRKRLSELKAK-LEALEEELSE 935
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
518-672 |
2.53e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 518 KQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 597
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462553653 598 QQADAALEEFKRQvELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLwqLEDIRQRYEQQIVELKLEHEQE 672
Cdd:PRK12704 110 EELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-540 |
5.47e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 5.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 252 RIREKELDMKTkmMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLY---RSKQHETEETIRKLEKKVQTL---IR 325
Cdd:TIGR02168 221 ELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEEKLeelRLEVSELEEEIEELQKELYALaneIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 326 DCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNA--VAEMEQEKFDLQKQHT------ENIQELLEDTNVRLNKME 397
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAeeLAELEEKLEELKEELEsleaelEELEAELEELESRLEELE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 398 SEYMAQTQ---STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyQITCSELQEVKARRNTLHKEKDHLVNDY 474
Cdd:TIGR02168 379 EQLETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462553653 475 EqnmkllqtkydadinllkqEHALSASKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQ 540
Cdd:TIGR02168 457 E-------------------RLEEALEELREELEEAEQALDAAERELAQLQ-ARLDSLERLQENLE 502
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
502-642 |
5.98e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.36 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 502 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQ-MEKSHLKhiYEKKAHDLQSELDKGKEDTQKKIHK-FEEAL 579
Cdd:PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKeAEKLKEE--LEEKKEKLQEEEDKLLEEAEKEAQQaIKEAK 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553653 580 KEKEEQLTRVTEVQRLQ-----AQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK 642
Cdd:PRK00409 584 KEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
366-727 |
6.39e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 6.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 366 EMEQEKFDLQKqhtenIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARvQQLTGEAENsnlQRQKLIQEKAELERC 445
Cdd:pfam01576 6 EMQAKEEELQK-----VKERQQKAESELKELEKKHQQLCEEKNALQEQLQAE-TELCAEAEE---MRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 446 YQITCSELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDADiNLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 525
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKM----QQHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 526 LQRKQ----------QLRDQENKFQMeKSHLKHIYEKKAHDLQSEL---DKGKEDTQKKIHKFEEALKEKEEQLTRvtev 592
Cdd:pfam01576 152 KERKLleeriseftsNLAEEEEKAKS-LSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLEGESTDLQEQIAE---- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 593 qrLQAQQADAALEEFKRQVELNSEKVYAEmKEQMEKVEAdltrSKSLREKQS-----KEFLWQLEDIRQRYEQQIVELKL 667
Cdd:pfam01576 227 --LQAQIAELRAQLAKKEEELQAALARLE-EETAQKNNA----LKKIRELEAqiselQEDLESERAARNKAEKQRRDLGE 299
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462553653 668 EHEQEKTHLL--QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQASKKL 727
Cdd:pfam01576 300 ELEALKTELEdtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEEL 361
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
567-739 |
8.84e-05 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 45.63 E-value: 8.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 567 DTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAAL--EEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQs 644
Cdd:COG2268 211 ETEIAIAQANREAEEAELEQEREIETARIAEAEAELAKkkAEERREAETARAEAEAAYEIAEANAEREVQRQLEIAERE- 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 645 KEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFkkrdaqas 724
Cdd:COG2268 290 REIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAEGKRALAEAWNKLGDAAILLM-------- 361
|
170
....*....|....*
gi 2462553653 725 kkLLGILAEIISEKV 739
Cdd:COG2268 362 --LIEKLPEIAEAAA 374
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
272-738 |
1.21e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 272 EKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRdcqvireTKEDQIAELKK-------- 343
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR-------MYEDKIEELEKqlvlanse 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 344 ICEQSTE-----SLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNvrlNKMESEYMAQTQSTNHM-IKELEAR 417
Cdd:pfam15921 358 LTEARTErdqfsQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG---NSITIDHLRRELDDRNMeVQRLEAL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 418 VQQLTGEAENSNLQRQKLIQEKAE-LERCYQITCselqEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEH 496
Cdd:pfam15921 435 LKAMKSECQGQMERQMAAIQGKNEsLEKVSSLTA----QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 497 ALSASKASsmIEELEQNVcqlkqqlqESELQRKQQLRDQENkfqmeksHLKHIyekkahdlQSELDKGKEDTQKKiHKFE 576
Cdd:pfam15921 511 AIEATNAE--ITKLRSRV--------DLKLQELQHLKNEGD-------HLRNV--------QTECEALKLQMAEK-DKVI 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 577 EALKEKEEQLTRVT-----EVQRLQAQQADAALEEFKRQVELNSEKVYAEMKE----QMEKVEADLTRSKSLREKQSKEF 647
Cdd:pfam15921 565 EILRQQIENMTQLVgqhgrTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDakirELEARVSDLELEKVKLVNAGSER 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 648 LWQLEDIRQRYEQQIVELKlEHEQEKTHLLQQHNAEKDSLvRDHEREIE----NLEKQLRAANMEHE---NQIQEFKKRD 720
Cdd:pfam15921 645 LRAVKDIKQERDQLLNEVK-TSRNELNSLSEDYEVLKRNF-RNKSEEMEtttnKLKMQLKSAQSELEqtrNTLKSMEGSD 722
|
490
....*....|....*...
gi 2462553653 721 AQASKKLLGILAEIISEK 738
Cdd:pfam15921 723 GHAMKVAMGMQKQITAKR 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-525 |
1.32e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDcQVI 330
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL-AEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 331 RETKEDQIAELKKICEQsteslnndwekkLHNAVAEMEQEKFDLqKQHTENIQELLEDTNVRLNKMESeymaQTQSTNHM 410
Cdd:TIGR02168 339 LAELEEKLEELKEELES------------LEAELEELEAELEEL-ESRLEELEEQLETLRSKVAQLEL----QIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 411 IKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADIN 490
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462553653 491 LLKQEHALSASKAS--SMIEELEQNVCQLKQQLQESE 525
Cdd:TIGR02168 480 AERELAQLQARLDSleRLQENLEGFSEGVKALLKNQS 516
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
380-718 |
1.66e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 380 ENIQELLEDTNVRLNKMEsEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQitcsELQEVKAR 459
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 460 RNTLHKEKDHLvndyEQNMKLLQTKydadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK-QQLRDQENK 538
Cdd:PRK03918 240 IEELEKELESL----EGSKRKLEEK--------IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 539 FQMEKSHLKHIYEKKAHDLQ-------------SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE 605
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEerikeleekeerlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 606 EFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEkthLLQQHNAEKD 685
Cdd:PRK03918 388 KLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELK 462
|
330 340 350
....*....|....*....|....*....|...
gi 2462553653 686 SlVRDHEREIENLEKQLRAANMEHENQIQEFKK 718
Cdd:PRK03918 463 R-IEKELKEIEEKERKLRKELRELEKVLKKESE 494
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
268-727 |
1.69e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 268 KFHEEKLKLQQKHDaDVQKILERKNNEIEELKTLyRSKQHETEETIRKLEKKVQTL---IRDCQVIRETKEDQIAELKKI 344
Cdd:PRK02224 224 RYEEQREQARETRD-EADEVLEEHEERREELETL-EAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERDDLLAE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 345 CE------QSTESLNNDWEKKLHNAVAEMEQEKFDLQkQHTENIQEL------LEDTNVRLNKMESEYMAQTQST----- 407
Cdd:PRK02224 302 AGlddadaEAVEARREELEDRDEELRDRLEECRVAAQ-AHNEEAESLredaddLEERAEELREEAAELESELEEAreave 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 408 --NHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqitcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKY 485
Cdd:PRK02224 381 drREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR-------EERDELREREAELEATLRTARERVEEAEALLEAGK 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 486 --DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQ--ESELQRKQQLRDQENKFQMekshlkhiYEKKAHDLQSEL 561
Cdd:PRK02224 454 cpECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEevEERLERAEDLVEAEDRIER--------LEERREDLEELI 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 562 DKGKEDTQKKIHKFEEALKEKEEqLTRVTEVQRLQAQQADAALEEFKRQV-ELNSEKV-YAEMKEQMEKVEADLT----- 634
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAE-LEAEAEEKREAAAEAEEEAEEAREEVaELNSKLAeLKERIESLERIRTLLAaiada 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 635 --RSKSLREK---------QSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLR 703
Cdd:PRK02224 605 edEIERLREKrealaelndERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIG 684
|
490 500
....*....|....*....|....
gi 2462553653 704 AANMEHENQIQEFKKRDAQASKKL 727
Cdd:PRK02224 685 AVENELEELEELRERREALENRVE 708
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
278-675 |
1.91e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 278 QKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEdqiaELKKICEQSTESLNN--D 355
Cdd:TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN----KLQKVNRDIQRLKNDieE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 356 WEKKLHNAVAEMEQEKfDLQKQHT--ENIQELLEDTNVRLNKMESEYMAQtqstnhmikELEARVQQLTGEAENSNLQRQ 433
Cdd:TIGR00606 770 QETLLGTIMPEEESAK-VCLTDVTimERFQMELKDVERKIAQQAAKLQGS---------DLDRTVQQVNQEKQEKQHELD 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 434 KLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLlkQEHALSASKASSMIEELEQN 513
Cdd:TIGR00606 840 TVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV--QSLIREIKDAKEQDSPLETF 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 514 VCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKaHDLQSELDKGKEDTQKK----IHKFEEALKEKEEQLTRV 589
Cdd:TIGR00606 918 LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM-KDIENKIQDGKDDYLKQketeLNTVNAQLEECEKHQEKI 996
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 590 TEVQRLQAQQADAA-LEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLE---DIRQRYEQQIVEL 665
Cdd:TIGR00606 997 NEDMRLMRQDIDTQkIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEeniDLIKRNHVLALGR 1076
|
410
....*....|
gi 2462553653 666 KLEHEQEKTH 675
Cdd:TIGR00606 1077 QKGYEKEIKH 1086
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
277-722 |
1.97e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.73 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 277 QQKHDADVQkiLERKNNEIEELKT---LYRSKQHETEETIRKLEKKVQTLirdcqvirETKEDQIAELK-KICEQSTESL 352
Cdd:pfam05557 118 RQIQRAELE--LQSTNSELEELQErldLLKAKASEAEQLRQNLEKQQSSL--------AEAEQRIKELEfEIQSQEQDSE 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 353 NNDWEKKLHNAVAEMEQEkfdlqkqhteniQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEaRVQQLTGEAENSNLQR 432
Cdd:pfam05557 188 IVKNSKSELARIPELEKE------------LERLREHNKHLNENIENKLLLKEEVEDLKRKLE-REEKYREEAATLELEK 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 433 QKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSAskASSMIEELEQ 512
Cdd:pfam05557 255 EKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQ--YLKKIEDLNK 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 513 NVCQLKQQLQEseLQRKQQLRDQENKF--QMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVT 590
Cdd:pfam05557 333 KLKRHKALVRR--LQRRVLLLTKERDGyrAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEEL 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 591 EVQRLQAQQADAALEEFKRQVELN----SEKVYAEMKEQMEKVEADLTRSKslREKQSKEFLWQLEDIRQRYEQQIVEL- 665
Cdd:pfam05557 411 GGYKQQAQTLERELQALRQQESLAdpsySKEEVDSLRRKLETLELERQRLR--EQKNELEMELERRCLQGDYDPKKTKVl 488
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462553653 666 ------KLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQ 722
Cdd:pfam05557 489 hlsmnpAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKE 551
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
248-570 |
2.08e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 248 HFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKIL-ERKNNEIEELKTLYRSKQHETEETIRKLEKKvqtlird 326
Cdd:pfam02463 187 ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKLNEERIDLLQELLRDEQEEIESSKQE------- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 327 cQVIRETKEDQIAELKKICEQSTESLNNDWEKK-LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQ 405
Cdd:pfam02463 260 -IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 406 STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKy 485
Cdd:pfam02463 339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 486 dADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 565
Cdd:pfam02463 418 -EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
....*
gi 2462553653 566 EDTQK 570
Cdd:pfam02463 497 ERSQK 501
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
328-705 |
2.20e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 328 QVIRETKEDQIAELKKICEQST---ESLNNDWEKKLHNAVAEMEQ--EKFDLQKQHTENIQELLEDTNVRLNKMESEYMA 402
Cdd:pfam01576 319 QELRSKREQEVTELKKALEEETrshEAQLQEMRQKHTQALEELTEqlEQAKRNKANLEKAKQALESENAELQAELRTLQQ 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 403 QTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQ 482
Cdd:pfam01576 399 AKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQ 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 483 TKYDADINLLKQEHALSASKASSM---------IEELEQNVCQLKQQLQES--------------ELQRKQQLRDQENKF 539
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQeqleeeeeaKRNVERQLSTLQAQLSDMkkkleedagtlealEEGKKRLQRELEALT 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 540 QM--EKSHLKHIYEKKAHDLQSELDKGKEDTQ----------KKIHKFEEALKE-------------KEEQLTRVTEVQR 594
Cdd:pfam01576 559 QQleEKAAAYDKLEKTKNRLQQELDDLLVDLDhqrqlvsnleKKQKKFDQMLAEekaisaryaeerdRAEAEAREKETRA 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 595 LQAQQADAALEEFKRQVELNSEKVYAEM------KEQMEKVEADLTRSKSLREKQSKEFLWQL----------EDIRQRY 658
Cdd:pfam01576 639 LSLARALEEALEAKEELERTNKQLRAEMedlvssKDDVGKNVHELERSKRALEQQVEEMKTQLeeledelqatEDAKLRL 718
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 2462553653 659 EQQIVELKLEHEQEKTHLLQQHNAEKDSL---VRDHEREIENLEKQLRAA 705
Cdd:pfam01576 719 EVNMQALKAQFERDLQARDEQGEEKRRQLvkqVRELEAELEDERKQRAQA 768
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
557-727 |
2.21e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 557 LQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtevqrlqaQQADAALEEFKRQ---VELNSE-----KVYAEMKEQMEK 628
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKEL-----------EEAEAALEEFRQKnglVDLSEEaklllQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 629 VEADLTRSKSLR---EKQSKEFLWQLEDIR-----QRYEQQIVELKLEHEQEKTHLLQQHNAekdslVRDHEREIENLEK 700
Cdd:COG3206 231 ARAELAEAEARLaalRAQLGSGPDALPELLqspviQQLRAQLAELEAELAELSARYTPNHPD-----VIALRAQIAALRA 305
|
170 180 190
....*....|....*....|....*....|.
gi 2462553653 701 QLRAANMEH----ENQIQEFKKRDAQASKKL 727
Cdd:COG3206 306 QLQQEAQRIlaslEAELEALQAREASLQAQL 336
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
251-470 |
2.38e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQK----ILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTL--- 323
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKkngeNIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIedp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 324 ------IRDCQVIRETKEDQIAELKK------ICEQSTESLNNDWEKklhnaVAEMEQEKFDLQKQHteniqELLEDTNV 391
Cdd:PHA02562 254 saalnkLNTAAAKIKSKIEQFQKVIKmyekggVCPTCTQQISEGPDR-----ITKIKDKLKELQHSL-----EKLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 392 RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEaENSNLQRQKLIQE--------KAELERCYQitcsELQEVKARRNTL 463
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLLELKNKISTNKQSLITL-VDKAKKVKAAIEElqaefvdnAEELAKLQD----ELDKIVKTKSEL 398
|
....*..
gi 2462553653 464 HKEKDHL 470
Cdd:PHA02562 399 VKEKYHR 405
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
335-537 |
2.47e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 335 EDQIAELKKICEQSTESLNNdwEKKLHNAVAEMEQEKFDLQKQhtENIQELLEDTNVRLNKMESEYmaqtQSTNHMIKEL 414
Cdd:COG3206 181 EEQLPELRKELEEAEAALEE--FRQKNGLVDLSEEAKLLLQQL--SELESQLAEARAELAEAEARL----AALRAQLGSG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 415 EARVQQLTGEAENSNL--QRQKLIQEKAELERCYQITCSELQEVKARRNTLHK----EKDHLVNDYEQNMKLLQTK---Y 485
Cdd:COG3206 253 PDALPELLQSPVIQQLraQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqlqqEAQRILASLEAELEALQAReasL 332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462553653 486 DADINLLKQEhALSASKASSMIEELEQNVcQLKQQLQESELQRKQQLRDQEN 537
Cdd:COG3206 333 QAQLAQLEAR-LAELPELEAELRRLEREV-EVARELYESLLQRLEEARLAEA 382
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
399-728 |
3.29e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 399 EYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNM 478
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 479 KLLQTKYDADINLLKQEHALSASKASSMIEELEQnvcqlkQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ 558
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE------KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 559 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 638
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 639 LREKQSKEFLWQLEDiRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 718
Cdd:pfam02463 401 SEEEKEAQLLLELAR-QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330
....*....|
gi 2462553653 719 RDAQASKKLL 728
Cdd:pfam02463 480 VKLQEQLELL 489
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
386-627 |
3.35e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 386 LEDTNVRLNKME---SEYMAQTQSTNHMIKELEARVQQLTGEAENSN-LQRQKLIQEKAELE-------------RCYQI 448
Cdd:PRK04863 839 LRQLNRRRVELEralADHESQEQQQRSQLEQAKEGLSALNRLLPRLNlLADETLADRVEEIReqldeaeeakrfvQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 449 TCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQT---KYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 525
Cdd:PRK04863 919 ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDakqQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAE 998
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 526 LQR---KQQLRDQENKFQMekshlkhiYEKKAHDLQSELDKGKE---DTQKKIHKF--------EEALKEKEEQL----- 586
Cdd:PRK04863 999 QERtraREQLRQAQAQLAQ--------YNQVLASLKSSYDAKRQmlqELKQELQDLgvpadsgaEERARARRDELharls 1070
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2462553653 587 ---TRVTEVQRlQAQQADAALEEFKRQVELnSEKVYAEMKEQME 627
Cdd:PRK04863 1071 anrSRRNQLEK-QLTFCEAEMDNLTKKLRK-LERDYHEMREQVV 1112
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
262-695 |
3.69e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 262 TKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEE----LKTLYRSKQH-----ETEETIRKLEKKV----QTLIRDCQ 328
Cdd:TIGR01612 873 TNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEeyqnINTLKKVDEYikiceNTKESIEKFHNKQnilkEILNKNID 952
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 329 VIRETKE--------------DQIAELKKICEQ----STESLNNDWEKKLHNAVAEMEQEK-------FDLQKQHTENIQ 383
Cdd:TIGR01612 953 TIKESNLieksykdkfdntliDKINELDKAFKDaslnDYEAKNNELIKYFNDLKANLGKNKenmlyhqFDEKEKATNDIE 1032
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 384 ELLEDTNVRLNKMEseyMAQTQSTNHMIKELEARVQQlTGEAENSNlqrqklIQEKAElercyqITCSELQEVkarrntl 463
Cdd:TIGR01612 1033 QKIEDANKNIPNIE---IAIHTSIYNIIDEIEKEIGK-NIELLNKE------ILEEAE------INITNFNEI------- 1089
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 464 hKEKDHLVNdYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEqnvcQLKQQLQESELQRKQQLRDqenkfqMEK 543
Cdd:TIGR01612 1090 -KEKLKHYN-FDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALE----EIKKKSENYIDEIKAQIND------LED 1157
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 544 SHLKHIY-------EKKAHDLQSELDKgKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVElNSE 616
Cdd:TIGR01612 1158 VADKAISnddpeeiEKKIENIVTKIDK-KKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKID-EEK 1235
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 617 KVYAEMKEQMEKVEADLTRSKslreKQSKEFLWQLeDIRQRYEQQIVELKLEHEQEKT-HLLQQHNAEKDSLVRDHEREI 695
Cdd:TIGR01612 1236 KKSEHMIKAMEAYIEDLDEIK----EKSPEIENEM-GIEMDIKAEMETFNISHDDDKDhHIISKKHDENISDIREKSLKI 1310
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
580-718 |
3.78e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 580 KEKEEQLTRVTEVQRLQAQQADAALEEFKRQVelnsEKVYAEMKEQMEKVEAdltRSKSLREKQskeflwqlediRQRYE 659
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE---EEDKLLEEA-----------EKEAQ 576
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462553653 660 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREIENLEKQLRAANMEHENQIQEFKK 718
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKE 632
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-523 |
4.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 252 RIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELktlyRSKQHETEETIRKLEKKVQTLIRDCQVIR 331
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 332 EtkedQIAELKKICEQSTESLNNDWEK--KLHNAVAEMEQEKFDLQKQHtENIQELLEDTNVRLNKMESEYMAQTQSTNH 409
Cdd:TIGR02168 803 E----ALDELRAELTLLNEEAANLRERleSLERRIAATERRLEDLEEQI-EELSEDIESLAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 410 MIKE---LEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYD 486
Cdd:TIGR02168 878 LLNErasLEEALALLRSELEELSEELRELESKRSELRR-------ELEELREKLAQLELRLEGL----EVRIDNLQERLS 946
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462553653 487 ADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQE 523
Cdd:TIGR02168 947 EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
507-701 |
4.17e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 507 IEELEQNVCQLKQQLQ-----ESELQRKQQLRDQENKFQMEKSHLKH-IYEKKAHDLQSELDKGKEDTQKKIHKFEEALK 580
Cdd:COG4913 237 LERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRAALRLwFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 581 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNsEKVYAEMKEQMEKVEADLTR--------SKSLRE--KQSKEFLWQ 650
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQLEREIERL-ERELEERERRRARLEALLAAlglplpasAEEFAAlrAEAAALLEA 395
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462553653 651 LEDIRQRYEQQIVELKLEheqekthlLQQHNAEKDSLvrdhEREIENLEKQ 701
Cdd:COG4913 396 LEEELEALEEALAEAEAA--------LRDLRRELREL----EAEIASLERR 434
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
370-705 |
5.02e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 5.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 370 EKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqit 449
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE----- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 450 csELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALSA--SKASSMIEELEQNVCQLKQQLQESEL 526
Cdd:TIGR02169 252 --ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAeiASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 527 QRKQQLRDQEN-------------KFQMEKSHLKHIYEKKAHDLQSELDKGKE--DTQKKIHKFEEALKEKEEQLTRVTE 591
Cdd:TIGR02169 330 EIDKLLAEIEElereieeerkrrdKLTEEYAELKEELEDLRAELEEVDKEFAEtrDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 592 VQRLQAQQADAALEEFKRQVELNSEKVY---AEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEqqivelKLE 668
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKY-EQELYDLKEEYD------RVE 482
|
330 340 350
....*....|....*....|....*....|....*..
gi 2462553653 669 HEQEKThllqqhnaekdslvrdhEREIENLEKQLRAA 705
Cdd:TIGR02169 483 KELSKL-----------------QRELAEAEAQARAS 502
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
250-725 |
5.58e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 250 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 329
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 330 iretkEDQIAELKKiceqsteslnndwekklhnavaeMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYmaqtQSTNH 409
Cdd:TIGR00606 268 -----DNEIKALKS-----------------------RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNH----QRTVR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 410 MIKELEARVQQltgEAENSNLQRQKLIQEKAELER---CYQITCSELQEVKARRNTLHKE-KDHLVNDYEQNMKLLQTKY 485
Cdd:TIGR00606 316 EKERELVDCQR---ELEKLNKERRLLNQEKTELLVeqgRLQLQADRHQEHIRARDSLIQSlATRLELDGFERGPFSERQI 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 486 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKfqmekshlKHIYEKKAHDLQSELDKGK 565
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELK--------KEILEKKQEELKFVIKELQ 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 566 --EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQ 643
Cdd:TIGR00606 465 qlEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 644 SKEFlWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQA 723
Cdd:TIGR00606 545 MDKD-EQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKE--INQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
..
gi 2462553653 724 SK 725
Cdd:TIGR00606 622 SS 623
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
307-636 |
5.69e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 307 HETEETIRKLEKKVQTLIRDCQVIRETKEDQIAEL-KKICEQSTE------SLNNDwEKKLHNAVAEMEQEKFDLQKQHT 379
Cdd:pfam12128 596 AASEEELRERLDKAEEALQSAREKQAAAEEQLVQAnGELEKASREetfartALKNA-RLDLRRLFDEKQSEKDKKNKALA 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 380 ENIQELLEdtnvRLNKMESEymaqtqsTNHMIKELEARVQQLTGEAENSNLQRQKLIQEkAELERCYQITcSELQEVKAR 459
Cdd:pfam12128 675 ERKDSANE----RLNSLEAQ-------LKQLDKKHQAWLEEQKEQKREARTEKQAYWQV-VEGALDAQLA-LLKAAIAAR 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 460 RNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASsmIEELEQNVCQLKQQLQESELQRKQQLRDQENKF 539
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIER--IAVRRQEVLRYFDWYQETWLQRRPRLATQLSNI 819
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 540 qmekshlkhiyEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR----------------------LQA 597
Cdd:pfam12128 820 -----------ERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRglrcemsklatlkedanseqaqGSI 888
|
330 340 350
....*....|....*....|....*....|....*....
gi 2462553653 598 QQADAALEEFKRQVELNSEKVYAEMkEQMEKVEADLTRS 636
Cdd:pfam12128 889 GERLAQLEDLKLKRDYLSESVKKYV-EHFKNVIADHSGS 926
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
397-715 |
6.11e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 397 ESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL--QEVKARRNTLHKEKDHLVNDY 474
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKarQAEMDRQAAIYAEQERMAMER 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 475 EQNM-KLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQL-QESELQRKQQLRDQEN--KFQMEKSHLKHIY 550
Cdd:pfam17380 347 ERELeRIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVrQELEAARKVKILEEERqrKIQQQKVEMEQIR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 551 EKKAHDLQSELDKGKEDTQKKIHKFeealkeKEEQLTRVTEVQRLQAQQAdaalEEFKRQVELNsekvyaemKEQMEKVE 630
Cdd:pfam17380 427 AEQEEARQREVRRLEEERAREMERV------RLEEQERQQQVERLRQQEE----ERKRKKLELE--------KEKRDRKR 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 631 ADLTRSKSLREkqskeflwQLEDIRQryeqqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE 710
Cdd:pfam17380 489 AEEQRRKILEK--------ELEERKQ---------AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
....*
gi 2462553653 711 NQIQE 715
Cdd:pfam17380 552 RRIQE 556
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
272-718 |
6.23e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.50 E-value: 6.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 272 EKLKLQQKHDADVQKILERKNNEIEELKTlyRSKQHETEETIRKLEKKVQTLI-------RDCQVIRETKEDQIAE---- 340
Cdd:TIGR01612 1229 EKIDEEKKKSEHMIKAMEAYIEDLDEIKE--KSPEIENEMGIEMDIKAEMETFnishdddKDHHIISKKHDENISDirek 1306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 341 -LKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTE--NIQELLEDTNVR--LNKMEsEYMAQTQSTNHMIK-EL 414
Cdd:TIGR01612 1307 sLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEiaNIYNILKLNKIKkiIDEVK-EYTKEIEENNKNIKdEL 1385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 415 EARVQQLTGEAENSNLQRQKLIQEKA----ELERCyqitcseLQEVKARRNTLHKEKDHlVNDYEQNMKllqtKYDADIN 490
Cdd:TIGR01612 1386 DKSEKLIKKIKDDINLEECKSKIESTlddkDIDEC-------IKKIKELKNHILSEESN-IDTYFKNAD----ENNENVL 1453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 491 LL---------KQEHALSASKASSM------IEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAH 555
Cdd:TIGR01612 1454 LLfkniemadnKSQHILKIKKDNATndhdfnINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSAL 1533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 556 DLQSELDKGKEDTQKKIHKFEEALK------EKEEQltRVTEVQRLQAQQADAALEEFKrqvelnSEKVYAEMKEQMEKV 629
Cdd:TIGR01612 1534 AIKNKFAKTKKDSEIIIKEIKDAHKkfileaEKSEQ--KIKEIKKEKFRIEDDAAKNDK------SNKAAIDIQLSLENF 1605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 630 EADLTRSKSLREKqSKEFLWQLEDIrqryEQQIVELKLEHEQEKthlLQQHNAEKDSL------VRDHEREIENLEKQLR 703
Cdd:TIGR01612 1606 ENKFLKISDIKKK-INDCLKETESI----EKKISSFSIDSQDTE---LKENGDNLNSLqeflesLKDQKKNIEDKKKELD 1677
|
490
....*....|....*...
gi 2462553653 704 AANME---HENQIQEFKK 718
Cdd:TIGR01612 1678 ELDSEiekIEIDVDQHKK 1695
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
202-640 |
7.27e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 202 SDIEARLNSWNLGIENPRYLRQKPIPVSLQMTPKfslrksssfhddhflSRIREKELDMKTKMMEAKFHEEKLKLQQKHD 281
Cdd:pfam02463 119 KEVAELLESQGISPEAYNFLVQGGKIEIIAMMKP---------------ERRLEIEEEAAGSRLKRKKKEALKKLIEETE 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 282 ADVQKILERKNNEIEELKTLYRSKqheteETIRKLEKKVQTlirdcqviRETKEDQIAELKkicEQSTESLNNDWEKKLh 361
Cdd:pfam02463 184 NLAELIIDLEELKLQELKLKEQAK-----KALEYYQLKEKL--------ELEEEYLLYLDY---LKLNEERIDLLQELL- 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 362 navaEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAE 441
Cdd:pfam02463 247 ----RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 442 LERCYQITCSELQEVKARRN--TLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQ 519
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKelKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 520 QLQESELQ---RKQQLRDQENKFQMEKSHLKHIYE----KKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEV 592
Cdd:pfam02463 403 EEKEAQLLlelARQLEDLLKEEKKEELEILEEEEEsielKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 2462553653 593 QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLR 640
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGR 530
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
279-708 |
8.85e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 279 KHDADVQKILERKNNEIEELKTLYrskqhetEETIRKLEKKVQTLIRDCQVIReTKEDQIAELKKICEQSTESLNNDWEK 358
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMY-------EDKIEELEKQLVLANSELTEAR-TERDQFSQESGNLDDQLQKLLADLHK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 359 KLHNAVAEMEQEK--FDLQKQHTENIQEL---LEDTNVRLNKME-------------------------------SEYMA 402
Cdd:pfam15921 389 REKELSLEKEQNKrlWDRDTGNSITIDHLrreLDDRNMEVQRLEallkamksecqgqmerqmaaiqgkneslekvSSLTA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 403 QTQSTNHMIKELearVQQLTGEA---ENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDyEQNMK 479
Cdd:pfam15921 469 QLESTKEMLRKV---VEELTAKKmtlESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-GDHLR 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 480 LLQTKYDAdinlLKqehaLSASKASSMIEELEQNVCQLKQQLQE------SELQRKQQLRDQENKFQMEKSHLKHIYEKK 553
Cdd:pfam15921 545 NVQTECEA----LK----LQMAEKDKVIEILRQQIENMTQLVGQhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKK 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 554 AHDLQsELDKGKEDTQKKIHKFEEAlkeKEEQLTRVTEVQrlqaQQADAALEEFKR-QVELNSekvyaeMKEQMEKVEAD 632
Cdd:pfam15921 617 DAKIR-ELEARVSDLELEKVKLVNA---GSERLRAVKDIK----QERDQLLNEVKTsRNELNS------LSEDYEVLKRN 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 633 LTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELK-LE----HEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANM 707
Cdd:pfam15921 683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKsMEgsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANK 762
|
.
gi 2462553653 708 E 708
Cdd:pfam15921 763 E 763
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
254-444 |
9.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 9.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 254 REKELDMKTKMMEAKfhEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHE---TEETIRKLEKKVQTLIRDCQVI 330
Cdd:COG4942 25 AEAELEQLQQEIAEL--EKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 331 RETKEDQIAELKKICEQSTESL---NNDWEK-----KLHNAVAEMEQEKFDLQKQHTENIQEL---LEDTNVRLNKMESE 399
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllsPEDFLDavrrlQYLKYLAPARREQAEELRADLAELAALraeLEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462553653 400 YMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELER 444
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
390-719 |
1.02e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 390 NVRLNKMESEYMAQTQSTNHMIKEL-----------------EARV---QQLTGEAENSNLQRQkLIQEKAELERcyqiT 449
Cdd:COG3096 237 ALRENRMTLEAIRVTQSDRDLFKHLiteatnyvaadymrhanERRElseRALELRRELFGARRQ-LAEEQYRLVE----M 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 450 CSELQEVKARRNTLHKE----KDHL---VNDYEQNMKLlqTKYDADInllkQEHALSASKASSMIEELEQNVCQLKQQLQ 522
Cdd:COG3096 312 ARELEELSARESDLEQDyqaaSDHLnlvQTALRQQEKI--ERYQEDL----EELTERLEEQEEVVEEAAEQLAEAEARLE 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 523 ESELQRKQqLRDQENKFQ--MEKSHLKHIYEKKAhdLQSeLDKGK------EDTQKKIHKFEEALKEKEEQLTRvtevQR 594
Cdd:COG3096 386 AAEEEVDS-LKSQLADYQqaLDVQQTRAIQYQQA--VQA-LEKARalcglpDLTPENAEDYLAAFRAKEQQATE----EV 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 595 LQAQQ----ADAALEEFKRQVELnSEKVYAEmkeqMEKVEADLTRSKSLREKQSKEFL--------WQLEDIRQRYEQQ- 661
Cdd:COG3096 458 LELEQklsvADAARRQFEKAYEL-VCKIAGE----VERSQAWQTARELLRRYRSQQALaqrlqqlrAQLAELEQRLRQQq 532
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462553653 662 -IVEL----------KLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLeKQLRAANMEHENQIQEFKKR 719
Cdd:COG3096 533 nAERLleefcqrigqQLDAAEELEELLAELEAQLEELEEQAAEAVEQR-SELRQQLEQLRARIKELAAR 600
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
398-726 |
1.03e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 398 SEYMAQTQSTNHMIKELEArvqqltgEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhkEKDHLVNDYEQN 477
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQK-------TIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLL--KKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 478 MKLLQTKYDAdinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQrkqqlrdqENKFQMEKS-HLKHIYEKKAHD 556
Cdd:COG5022 877 VELAERQLQE-----LKIDVKSISSLKLVNLELESEIIELKKSLSSDLIE--------NLEFKTELIaRLKKLLNNIDLE 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 557 LQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEvqrlqaqqadaALEEFKRQV---ELNSEKVYAEMKEQMEKVEADL 633
Cdd:COG5022 944 EGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLK-----------KSTILVREGnkaNSELKNFKKELAELSKQYGALQ 1012
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 634 TRSKSLREKQSK-EFLWQLEDI--RQRYEQQIveLKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE 710
Cdd:COG5022 1013 ESTKQLKELPVEvAELQSASKIisSESTELSI--LKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTE 1090
|
330
....*....|....*.
gi 2462553653 711 NQIQEFKKRDAQASKK 726
Cdd:COG5022 1091 NLLKTINVKDLEVTNR 1106
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
271-470 |
1.04e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 271 EEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRD-----CQVIRETKEDQIAELKKIc 345
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlshsrIPEIQAELSKLEEEVSRI- 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 346 EQSTESLNNDWEKK------LHNAVAEMEQEKFDLQKQHTENIQELlEDTNVRLNKMESEyMAQTQSTnhmIKELEARVQ 419
Cdd:TIGR02169 811 EARLREIEQKLNRLtlekeyLEKEIQELQEQRIDLKEQIKSIEKEI-ENLNGKKEELEEE-LEELEAA---LRDLESRLG 885
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462553653 420 QLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHL 470
Cdd:TIGR02169 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
341-679 |
1.97e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 341 LKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEaRVQQ 420
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR-EALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 421 LTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNdyeQNMKLLQTKYDADINLLKQEHALSA 500
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQQ-------LLKQLRARIEELRAQEAVLEE---TQERINRARKAAPLAAHIKAVTQIE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 501 SKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQS----ELDKGKEDTQ--KKIHK 574
Cdd:TIGR00618 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsireISCQQHTLTQhiHTLQQ 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 575 FEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKrqvELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKeflwQLEDI 654
Cdd:TIGR00618 387 QKTTLTQKLQSLCKELDILQREQATIDTRTSAFR---DLQGQLAHAKKQQELQQRYAELCAAAITCTAQCE----KLEKI 459
|
330 340
....*....|....*....|....*
gi 2462553653 655 RQRYEQQIVELKLEHEQEKTHLLQQ 679
Cdd:TIGR00618 460 HLQESAQSLKEREQQLQTKEQIHLQ 484
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
492-737 |
2.38e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 492 LKQEHALSASKASSMIEELEQNVCQLKQQLQESE-----LQRKQQLRDQENKFQMEKSHLKHIyEKKAHDLQSELdkgkE 566
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEaaleeFRQKNGLVDLSEEAKLLLQQLSEL-ESQLAEARAEL----A 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 567 DTQKKIHKFEEALKEKEEQLTRVTEVQRLqaQQADAALEEFKRQVELNSEKvYAEMKEQMEKVEADLTRSKSLREKQSKE 646
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVI--QQLRAQLAELEAELAELSAR-YTPNHPDVIALRAQIAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 647 FLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEKQLraanmeheNQIQEfKKRDAQASKK 726
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE--LRRLEREVEVARELY--------ESLLQ-RLEEARLAEA 382
|
250
....*....|.
gi 2462553653 727 LLGILAEIISE 737
Cdd:COG3206 383 LTVGNVRVIDP 393
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
390-726 |
2.46e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 390 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERcyqitcselqEVKARRNTLHKEK 467
Cdd:PRK04863 238 ALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADymRHAN-ERRVHLEEALELRR----------ELYTSRRQLAAEQ 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 468 DHLVN------DYEQNMKLLQTKY-DADINL-LKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKF 539
Cdd:PRK04863 307 YRLVEmarelaELNEAESDLEQDYqAASDHLnLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 540 QMEKSHLK------------HIYEKKA---HDLQSELDKGKED------TQKKIHKFEEALKEKEEQLTRvtevQRLQAQ 598
Cdd:PRK04863 387 AAEEEVDElksqladyqqalDVQQTRAiqyQQAVQALERAKQLcglpdlTADNAEDWLEEFQAKEQEATE----ELLSLE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 599 Q----ADAALEEFkrqvelnsEKVYAEMKeqmeKVEADLTRSKSLREKQSKEFLW---------------QLEDIRQRYE 659
Cdd:PRK04863 463 QklsvAQAAHSQF--------EQAYQLVR----KIAGEVSRSEAWDVARELLRRLreqrhlaeqlqqlrmRLSELEQRLR 530
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462553653 660 QQIVELKLEHEQEKTHLLQQHNAEK-DSLVRDHEREIENLEKQLRAAN---MEHENQIQEFKKRDAQASKK 726
Cdd:PRK04863 531 QQQRAERLLAEFCKRLGKNLDDEDElEQLQEELEARLESLSESVSEARerrMALRQQLEQLQARIQRLAAR 601
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
330-733 |
2.90e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 330 IRETKEDQiAELKKICEQSTESLNNDW-----EKKLH-NAVAEMEQEKFDLQKQHTENIQelledtnvRLNKMESEYMAQ 403
Cdd:COG3096 248 IRVTQSDR-DLFKHLITEATNYVAADYmrhanERRELsERALELRRELFGARRQLAEEQY--------RLVEMARELEEL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 404 TQSTNHMIKELEA------RVQQLTGEAE------------NSNLQRQKLIQEKAELERcyqitcselQEVKARRNTLHK 465
Cdd:COG3096 319 SARESDLEQDYQAasdhlnLVQTALRQQEkieryqedleelTERLEEQEEVVEEAAEQL---------AEAEARLEAAEE 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 466 EKDHLVN---DYEQNMKLLQTK---YDADINLLKQEHALSAskassmIEELEQ-NVCQLKQQLQESELQRKQQLRDQENK 538
Cdd:COG3096 390 EVDSLKSqlaDYQQALDVQQTRaiqYQQAVQALEKARALCG------LPDLTPeNAEDYLAAFRAKEQQATEEVLELEQK 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 539 FQMEKSHlKHIYEKKAHDLQS---ELDKGKEDTQKK----IHKFEEALKEKEEQL-TRVTEVQRLQAQQADAA--LEEFK 608
Cdd:COG3096 464 LSVADAA-RRQFEKAYELVCKiagEVERSQAWQTARellrRYRSQQALAQRLQQLrAQLAELEQRLRQQQNAErlLEEFC 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 609 RQV--ELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQ-------------------QIVELKL 667
Cdd:COG3096 543 QRIgqQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKElaarapawlaaqdalerlrEQSGEAL 622
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462553653 668 EHEQEKTHLLQQhnaekdslVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQASKKLLGiLAE 733
Cdd:COG3096 623 ADSQEVTAAMQQ--------LLEREREATVERDELAARKQALESQIERLSQPGGAEDPRLLA-LAE 679
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
251-738 |
3.14e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 251 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRS---KQHETEETIRKLEKKVQTLIRDC 327
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDlndKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 328 QVIRE---TKEDQIAELKKICEQSTESL--NNDWEKKLHNAVAEMEQEKFDLQKQHTE-------------NIQELLEDT 389
Cdd:TIGR04523 113 KNDKEqknKLEVELNKLEKQKKENKKNIdkFLTEIKKKEKELEKLNNKYNDLKKQKEElenelnllekeklNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 390 NVRLNKMESeYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDH 469
Cdd:TIGR04523 193 KNKLLKLEL-LLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 470 LVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQ------QLRDQENKFQMEK 543
Cdd:TIGR04523 272 KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQnnkiisQLNEQISQLKKEL 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 544 SHLKHIYEKKAHDL---QSELDKGKEDTQKKIHKFEEaLKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELnSEKVYA 620
Cdd:TIGR04523 352 TNSESENSEKQRELeekQNEIEKLKKENQSYKQEIKN-LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL-LEKEIE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 621 EMKEQMEKVEA---DLTRSKSLREKQSKEflwqLEDIRQRYEQQIVELKLEHEQEKTHL------LQQHNAEKDSLvRDH 691
Cdd:TIGR04523 430 RLKETIIKNNSeikDLTNQDSVKELIIKN----LDNTRESLETQLKVLSRSINKIKQNLeqkqkeLKSKEKELKKL-NEE 504
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 2462553653 692 EREIENLEKQLRAANMEHENQIQEFKKRDAQASKKLLGILAEIISEK 738
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
479-646 |
4.03e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 479 KLLQTKYDADiNLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLkhiyEKKAHDLq 558
Cdd:PRK12704 32 KIKEAEEEAK-RILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENL----DRKLELL- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 559 seldkgkEDTQKKIHKFEEALKEKEEQLT-RVTEVQRLQAQQadaaLEEFKRQVELNSEkvyaEMKEQ-MEKVEADLTRS 636
Cdd:PRK12704 106 -------EKREEELEKKEKELEQKQQELEkKEEELEELIEEQ----LQELERISGLTAE----EAKEIlLEKVEEEARHE 170
|
170
....*....|
gi 2462553653 637 KSLREKQSKE 646
Cdd:PRK12704 171 AAVLIKEIEE 180
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
515-717 |
4.12e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 39.87 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 515 CQLKQQLQESELQRKQQLRDQeNKfQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR 594
Cdd:cd16269 89 QKFQKKLMEQLEEKKEEFCKQ-NE-EASSKRCQALLQELSAPLEEKISQGSYSVPGGYQLYLEDREKLVEKYRQVPRKGV 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 595 lqaqQADAALEEFKRQVE------LNSEKVYAE----MKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQIVE 664
Cdd:cd16269 167 ----KAEEVLQEFLQSKEaeaeaiLQADQALTEkekeIEAERAKAEAAEQERKLLEEQQ-RELEQKLEDQERSYEEHLRQ 241
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462553653 665 LKLEHEQEKTHLLQQHNAEKDSLVRDHEREienLEKQLRAANMEHENQIQEFK 717
Cdd:cd16269 242 LKEKMEEERENLLKEQERALESKLKEQEAL---LEEGFKEQAELLQEEIRSLK 291
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
502-706 |
4.68e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.20 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 502 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELDKGKedtqkkiHKFEEALKE 581
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYRE----LRKSLLANR-------FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 582 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 654
Cdd:PRK04778 170 LEKQL--------------ENLEEEFSQFVELTESgdyvearEILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462553653 655 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN 706
Cdd:PRK04778 236 KAGYRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQ 288
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
503-723 |
4.74e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 503 ASSMIEELEQNVCQLKQQLQ--ESELQRKQQlrdqenkfQMEKShlkhiyEKKAHDLQSELdkgkEDTQKKIHKFEEALK 580
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEaaQAELDALQA--------ELEEL------NEEYNELQAEL----EALQAEIDKLQAEIA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 581 EKEEQLTRVTEV--QRLQAQQADAA-------------LEEFKRQVELnSEKVYAEMKEQMEKVEADLtrsKSLREKQSk 645
Cdd:COG3883 76 EAEAEIEERREElgERARALYRSGGsvsyldvllgsesFSDFLDRLSA-LSKIADADADLLEELKADK---AELEAKKA- 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553653 646 eflwQLEDIRQRYEQQIVELKLEHEQekthlLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQA 723
Cdd:COG3883 151 ----ELEAKLAELEALKAELEAAKAE-----LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
517-742 |
4.92e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 517 LKQQLQESELQRKQQLRDQENKFQ-MEKSHLKHIYEKKAHDLQS--ELDKGKEDTQKKIHKFEEALKEKEE-QLTRVTEV 592
Cdd:pfam17380 271 LNQLLHIVQHQKAVSERQQQEKFEkMEQERLRQEKEEKAREVERrrKLEEAEKARQAEMDRQAAIYAEQERmAMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 593 QRLQAQQADAALEEFKRQ-VELNSEKVYAEMKEQMEKVEADlTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQ 671
Cdd:pfam17380 351 ERIRQEERKRELERIRQEeIAMEISRMRELERLQMERQQKN-ERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462553653 672 EKTHLLQQHNAEKdslvrDHEREIEnlekQLRAANMEHENQIQEFKKRDAQASKKLLGILAEIISEKVLDE 742
Cdd:pfam17380 430 EEARQREVRRLEE-----ERAREME----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEE 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
358-540 |
5.09e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 358 KKLHNAVAEMEQEKFDLQKQHteNIQELLEDTNVRLNKMeSEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQ 437
Cdd:COG3206 185 PELRKELEEAEAALEEFRQKN--GLVDLSEEAKLLLQQL-SELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 438 EkaelercyqitcSELQEVKARRNTLHKEKDHLVNDYEQN---MKLLQTKYDADINLLKQEHALSASKASSMIEELEQNV 514
Cdd:COG3206 262 S------------PVIQQLRAQLAELEAELAELSARYTPNhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQARE 329
|
170 180
....*....|....*....|....*.
gi 2462553653 515 CQLKQQLQESElQRKQQLRDQENKFQ 540
Cdd:COG3206 330 ASLQAQLAQLE-ARLAELPELEAELR 354
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
506-714 |
6.00e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 506 MIEELEQNVCQLKQQLQES-ELQRKQQ---------LRDQENKFQMEKSHLKHIYEKKAhdlQSELDKgKEDTQKKIHKF 575
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRES---QSQEDL-RNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 576 EEALKEKEEQL----TRVTEVQRLQAQQaDAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQL 651
Cdd:pfam15921 155 EAAKCLKEDMLedsnTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEI 233
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462553653 652 EDIRQR---YEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhENQIQ 714
Cdd:pfam15921 234 SYLKGRifpVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ 298
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
508-717 |
6.66e-03 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 39.70 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 508 EELEQNVCQLKQQlqESELQRKQQLRDQEnkFQMEKSHLKHIYEKKAHDLQSElDKGKEDTQKKIHKFEEALKEKEEQLT 587
Cdd:pfam03528 4 EDLQQRVAELEKE--NAEFYRLKQQLEAE--FNQKRAKFKELYLAKEEDLKRQ-NAVLQEAQVELDALQNQLALARAEME 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 588 RVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLE----DIRQRYEQQIV 663
Cdd:pfam03528 79 NIKAVATVSENTKQEAIDEVKSQWQEEVASLQAIMKETVREYEVQFHRRLEQERAQWNQYRESAEreiaDLRRRLSEGQE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462553653 664 ELKLEHEQEKThllqQHNAEK-DSLVRDHEREIENLEKQLRAAnmehENQIQEFK 717
Cdd:pfam03528 159 EENLEDEMKKA----QEDAEKlRSVVMPMEKEIAALKAKLTEA----EDKIKELE 205
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
296-737 |
7.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 7.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 296 EELKTLYRSKQHETEETIRKLEKKVQTLIRdcqviRETKEDQIAELKKICEQSTESLNndwEKKLHNAVAEMEQEKFDLQ 375
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKE-----AEEKEEEYAELQEELEELEEELE---ELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 376 KQHTENIQEL------LEDTNVRLNKMEsEYMAQTQSTNHMIKELEARVQQLTGEAENsnLQRQKLIQEKAELERcyqiT 449
Cdd:COG4717 125 LQLLPLYQELealeaeLAELPERLEELE-ERLEELRELEEELEELEAELAELQEELEE--LLEQLSLATEEELQD----L 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 450 CSELQEVKARRNTLHKEKDHL---VNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQE--- 523
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAqeeLEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiag 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 524 -------------SELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVT 590
Cdd:COG4717 278 vlflvlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 591 EV-QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREkQSKEFLWQLEDIRQRYEQQIVELKLEH 669
Cdd:COG4717 358 ELeEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEE-QLEELLGELEELLEALDEEELEEELEE 436
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553653 670 EQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQASKKLLGILAEIISE 737
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
496-584 |
7.23e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 39.25 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 496 HALSASKASSMIEELEQNVCQLKQQLQESELQRKQQlRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK--EDTQKKIH 573
Cdd:smart00435 275 HEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLK-RKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKqiERLEERIE 353
|
90
....*....|.
gi 2462553653 574 KFEEALKEKEE 584
Cdd:smart00435 354 KLEVQATDKEE 364
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
255-463 |
7.42e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 255 EKELD-MKTKMMEAkfhEEKL-KLQQKHD-ADVQkilERKNNEIEELKTLyRSKQHETEETIRKLEKKVQTLirdcqvir 331
Cdd:COG3206 181 EEQLPeLRKELEEA---EAALeEFRQKNGlVDLS---EEAKLLLQQLSEL-ESQLAEARAELAEAEARLAAL-------- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 332 etkEDQIAELKkicEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTEN----------IQELLEDTNVRLNKMESEYM 401
Cdd:COG3206 246 ---RAQLGSGP---DALPELLQSPVIQQLRAQLAELEAELAELSARYTPNhpdvialraqIAALRAQLQQEAQRILASLE 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462553653 402 AQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLiqekAELERCYQITCSELQEVKARRNTL 463
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELPELEAEL----RRLEREVEVARELYESLLQRLEEA 377
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
509-727 |
7.89e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 509 ELEQNVCQLK---QQLQESELQRKQQLrDQENKFQMEKSHLK-HIYEKKAHDLQSELDKGKEDtQKKIHKFEEALKEKEE 584
Cdd:COG3096 847 ELERELAQHRaqeQQLRQQLDQLKEQL-QLLNKLLPQANLLAdETLADRLEELREELDAAQEA-QAFIQQHGKALAQLEP 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 585 QLTRV----TEVQRLQA--QQADAALEEFKRQVELNSEKV-------YAE--------------MKEQMEKVEADLTRSK 637
Cdd:COG3096 925 LVAVLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVqrrphfsYEDavgllgensdlnekLRARLEQAEEARREAR 1004
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 638 -SLREKQSK--EFLWQLEDIRQRYEQQIVELKlEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQ 714
Cdd:COG3096 1005 eQLRQAQAQysQYNQVLASLKSSRDAKQQTLQ-ELEQELEELGVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLT 1083
|
250
....*....|...
gi 2462553653 715 EFKKRDAQASKKL 727
Cdd:COG3096 1084 RCEAEMDSLQKRL 1096
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
254-733 |
7.97e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 254 REKELDMKTKMMEAKFHEEKLKLQQKHDadVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRET 333
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEA--ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 334 KEDQIAELkkicEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHtENIQELLEDTNVRLNKMESEY------MAQTQST 407
Cdd:TIGR02168 416 RERLQQEI----EELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELREELEEAEQALdaaereLAQLQAR 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 408 NHMIKELEARVQQLTGEAENSNLQRQK----------LIQEKAELERCYQITCSE---------LQEVKARRNTLHKEKD 468
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlseLISVDEGYEAAIEAALGGrlqavvvenLNAAKKAIAFLKQNEL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 469 HLVN------------DYEQNMKLLQTKYDADINLLKQEHALSASKA-------SSMIEELEQNVCQLKQQLQE------ 523
Cdd:TIGR02168 571 GRVTflpldsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggVLVVDDLDNALELAKKLRPGyrivtl 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 524 --------------------SELQRKQQLRDQENKFQM--EKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKE 581
Cdd:TIGR02168 651 dgdlvrpggvitggsaktnsSILERRREIEELEEKIEEleEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 582 KEEQLTRVT-EVQRLQAQQADAALEefkrQVELNSEKvyAEMKEQMEKVEADLTRSKSLREKQSKEFLwQLEDIRQRYEQ 660
Cdd:TIGR02168 731 LRKDLARLEaEVEQLEERIAQLSKE----LTELEAEI--EELEERLEEAEEELAEAEAEIEELEAQIE-QLKEELKALRE 803
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462553653 661 QIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQLRAANMEHEN---QIQEFKKRDAQASKKLLGILAE 733
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLErrIAATERRLEDLEEQIEELSEDIESlaaEIEELEELIEELESELEALLNE 881
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
240-673 |
9.15e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.32 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 240 KSSSFHDDHFLSRIREKELDMKTKMMEAKFH-EEKLKLQQKHDADVQKILERKNNEIEELktlyrskQHETEETIRKLEK 318
Cdd:pfam05483 66 KDSDFENSEGLSRLYSKLYKEAEKIKKWKVSiEAELKQKENKLQENRKIIEAQRKAIQEL-------QFENEKVSLKLEE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 319 KVQT---LIRDCQVIRETkedqIAELKKICEQSTESlnndwEKKLHNAVAEMEQEKFDLQkQHTENIQELLEDTNVRLNK 395
Cdd:pfam05483 139 EIQEnkdLIKENNATRHL----CNLLKETCARSAEK-----TKKYEYEREETRQVYMDLN-NNIEKMILAFEELRVQAEN 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 396 MESEYMAQTQSTNHMIKELEARVQQLTGEAENsnlQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYE 475
Cdd:pfam05483 209 ARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK---QVSLLLIQITEKENKMKDLTFLLEESRDKANQL-EEKTKLQDENL 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 476 QNMKLLQTKYDADINLLKQEHALSASKASSMIEELE---QNVCQLKQQlQESELQRKQQLRDQENKFQMEKSHLKHIYEK 552
Cdd:pfam05483 285 KELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQiatKTICQLTEE-KEAQMEELNKAKAAHSFVVTEFEATTCSLEE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 553 KAHDLQSELDKGKEdtQKKIHKFEEALKEKE-EQLTRVTEVQRLQAQQADAALEEfkRQVELNSEKVYAEMKEQMEKVEA 631
Cdd:pfam05483 364 LLRTEQQRLEKNED--QLKIITMELQKKSSElEEMTKFKNNKEVELEELKKILAE--DEKLLDEKKQFEKIAEELKGKEQ 439
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2462553653 632 DLTRSKSLREKQSKEFLWQLEDIR---QRYEQQIVELKLEHEQEK 673
Cdd:pfam05483 440 ELIFLLQAREKEIHDLEIQLTAIKtseEHYLKEVEDLKTELEKEK 484
|
|
| PRK05560 |
PRK05560 |
DNA gyrase subunit A; Validated |
414-459 |
9.42e-03 |
|
DNA gyrase subunit A; Validated
Pssm-ID: 235502 [Multi-domain] Cd Length: 805 Bit Score: 39.24 E-value: 9.42e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462553653 414 LEARVQQLTGeaensnLQRQKLIQEKAEL--------------ERCYQITCSELQEVKAR 459
Cdd:PRK05560 420 LDMRLQRLTG------LERDKIEDEYKELlaliadlkdilaspERLLEIIKEELLEIKEK 473
|
|
| |
