|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4482 |
pfam14818 |
Domain of unknown function (DUF4482); This family is found in eukaryotes, and is approximately ... |
1253-1376 |
2.12e-52 |
|
Domain of unknown function (DUF4482); This family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam11365.
Pssm-ID: 464333 [Multi-domain] Cd Length: 138 Bit Score: 180.65 E-value: 2.12e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 1253 MDLRWQIHHSEKNWNREKVELLDRLDRDRQEWERQKKEFLWRIEQLQKENSPRR------------GGSFLCDQKDGNVR 1320
Cdd:pfam14818 1 MDLRWQLQHTEKNWHREKMELLDRFDRERQEWESQKKIMQKKIEQLQREVSLRRkinmnerakvidGEKFVPDQKESSSP 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462559939 1321 PFPHQGSLRMPR--PVAMWPCADADSIPFEDRPLSKLKESDRCSASENLYLDALSLDD 1376
Cdd:pfam14818 81 PFPDSGQCEFPRmnHPGSLSKSDSDEESFLDEGNQKLKEQKRCKASENLFLDALSLDN 138
|
|
| SOGA |
pfam11365 |
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, ... |
526-620 |
1.60e-38 |
|
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, SOGA2, and SOGA3. SOGA1 regulates autophagy by playing a role in the reduction of glucose production in an adiponectin and insulin dependent manner.
Pssm-ID: 463264 [Multi-domain] Cd Length: 95 Bit Score: 139.36 E-value: 1.60e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 526 DSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELKLRLKLVEEEANI 605
Cdd:pfam11365 1 SSAELRRQLQFVEEEAELLRRSLSEIEDHNKQLTNELNKYKSKYGPDESSLSDGEGGGSDSSREAELQEELKLARLQINE 80
|
90
....*....|....*
gi 2462559939 606 LGRKIVELEVENRGL 620
Cdd:pfam11365 81 LSGKVMKLQYENRVL 95
|
|
| SOGA |
pfam11365 |
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, ... |
655-747 |
3.64e-38 |
|
Protein SOGA; The SOGA (suppressor of glucose by autophagy) family consists of proteins SOGA1, SOGA2, and SOGA3. SOGA1 regulates autophagy by playing a role in the reduction of glucose production in an adiponectin and insulin dependent manner.
Pssm-ID: 463264 [Multi-domain] Cd Length: 95 Bit Score: 138.20 E-value: 3.64e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 655 SSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREPGWLGEGASPGA--GGGAPLQEELKSARLQISE 732
Cdd:pfam11365 1 SSAELRRQLQFVEEEAELLRRSLSEIEDHNKQLTNELNKYKSKYGPDESSLSDGEGGGSdsSREAELQEELKLARLQINE 80
|
90
....*....|....*
gi 2462559939 733 LSGKVLKLQHENHAL 747
Cdd:pfam11365 81 LSGKVMKLQYENRVL 95
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
12-326 |
2.35e-14 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 79.60 E-value: 2.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 12 APDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFL----KDLHARPAAPGPAVP---------SSGRAPAPAAPRSP 78
Cdd:PHA03247 2563 APDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRApvddRGDPRGPAPPSPLPPdthapdpppPSPSPAANEPDPHP 2642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 79 NLAGKAPPSPGSLAAPGRLSR----RSGGVPGAKDKPPpgagaraaggakaALGSRRAARvAPAEPLSRAGKPPGAEPPS 154
Cdd:PHA03247 2643 PPTVPPPERPRDDPAPGRVSRprraRRLGRAAQASSPP-------------QRPRRRAAR-PTVGSLTSLADPPPPPPTP 2708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 155 AAAKgRKVKRGSRAPP----ARTVGPPTPAARIPAVTLAVTSVAGSPARCSRiSHTDSSSDLSDCPSEPLSDEQRLLPAA 230
Cdd:PHA03247 2709 EPAP-HALVSATPLPPgpaaARQASPALPAAPAPPAVPAGPATPGGPARPAR-PPTTAGPPAPAPPAAPAAGPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 231 SSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVS------GGFAGPGvaEDVRG 304
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPppslplGGSVAPG--GDVRR 2864
|
330 340
....*....|....*....|....
gi 2462559939 305 RSPPERPV--PGTPKEPSLGEQSR 326
Cdd:PHA03247 2865 RPPSRSPAakPAAPARPPVRRLAR 2888
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
350-681 |
1.13e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSyLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAK 429
Cdd:TIGR02168 689 LEEKIAELEKALAELRKE-LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 430 DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKtfnqnggmerpgnc 509
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-------------- 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 510 rpatKTQRKLAPRRKDDSADLRCQLQFAKEEaflmrkkMAKLGREKDELEQELQKYKSLYGDVDSPLptgeaggppstre 589
Cdd:TIGR02168 834 ----AATERRLEDLEEQIEELSEDIESLAAE-------IEELEELIEELESELEALLNERASLEEAL------------- 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 590 AELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLEsstELRRHLQFVEEE 669
Cdd:TIGR02168 890 ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDD 966
|
330
....*....|..
gi 2462559939 670 AELLRRSISEIE 681
Cdd:TIGR02168 967 EEEARRRLKRLE 978
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
7-316 |
1.88e-10 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 66.35 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 7 PAGGGAPDAklqPPGQHHRHHHLHPVAERRRLHRAPSPA-RPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAP 85
Cdd:PHA03307 122 PPASPPPSP---APDLSEMLRPVGSPGPPPAASPPAAGAsPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 86 PSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSR-RAARVAPAEPLSRAGKPPGAEPPSAAAKGRKVKR 164
Cdd:PHA03307 199 PAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSEsSGCGWGPENECPLPRPAPITLPTRIWEASGWNGP 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 165 GSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDRE 244
Cdd:PHA03307 279 SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPP 358
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462559939 245 PPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGP-----GVAEDVRGRSPPERPVPGTP 316
Cdd:PHA03307 359 PADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGrprpsPLDAGAASGAFYARYPLLTP 435
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
10-319 |
2.76e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 62.65 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 10 GGAPDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPG 89
Cdd:PHA03247 2639 DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA 2718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 90 SLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAAR---VAPAEPLSRAGKPPGAEPPSAAAKGRKVKRGS 166
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTagpPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 167 RAPPARTVGPPTPAARIPAVTLAVTSVAGSPArcsrishtdSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSsdREPP 246
Cdd:PHA03247 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPP---------PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVR--RRPP 2867
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462559939 247 RGAPTPSPAARGAPPGSPEPPALLAAPLAAGACP--GGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEP 319
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPpdQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
39-320 |
4.29e-09 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 62.11 E-value: 4.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 39 HRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLS--RRSGGVPGAKDKPPPGAG 116
Cdd:PHA03307 77 TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEmlRPVGSPGPPPAASPPAAG 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 117 ARAAGGAKAALGSRRAARVAP-AEPLSRAGKPPGAEPPSAAakgrkvkrgSRAPPARTVGPPTPAARIPAVTLAVTSVAG 195
Cdd:PHA03307 157 ASPAAVASDAASSRQAALPLSsPEETARAPSSPPAEPPPST---------PPAAASPRPPRRSSPISASASSPAPAPGRS 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 196 SPARCSRISHTDSSSDLSDCPSEPLSDEQRLLPA-----ASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALL 270
Cdd:PHA03307 228 AADDAGASSSDSSSSESSGCGWGPENECPLPRPApitlpTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGP 307
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2462559939 271 AAPLAAGACPGGRSIPSGVSGGFAGPGVAEDV---RGRSPPERPVPGTPKEPS 320
Cdd:PHA03307 308 APSSPRASSSSSSSRESSSSSTSSSSESSRGAavsPGPSPSRSPSPSRPPPPA 360
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
8-330 |
6.44e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.49 E-value: 6.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 8 AGGGAPDAKLQPPGQHHRHHHLHPVAERRRlHRAPSPARPflkdlharPAAPGPAVPSSGRapapaaprspnlAGKAPPS 87
Cdd:PHA03247 2728 ARQASPALPAAPAPPAVPAGPATPGGPARP-ARPPTTAGP--------PAPAPPAAPAAGP------------PRRLTRP 2786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 88 PGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAA-AKGRKVKRgs 166
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvAPGGDVRR-- 2864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 167 RAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAEsgtgssdrePP 246
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP---------PP 2935
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 247 RGAPTPSPAARGAPPGSPEppallaaplAAGACPGGRSipsgvsgGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSR 326
Cdd:PHA03247 2936 PPRPQPPLAPTTDPAGAGE---------PSGAVPQPWL-------GALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
|
....
gi 2462559939 327 LVPA 330
Cdd:PHA03247 3000 SLSR 3003
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
352-567 |
2.12e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.54 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 352 DELDELRAEMEEMRDSY--LEedvyQLQELRRELDRANKNCRILQYRLRKAEqkslkvAETGQVDGELIRSLEQDLKVAK 429
Cdd:COG4913 235 DDLERAHEALEDAREQIelLE----PIRELAERYAAARERLAELEYLRAALR------LWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 430 DvsvRLHHELKTVEEKRAKAEDENETLRQQMIEVE-ISKQALQNELERLKESSLKRRSTREMYKEK-KTFnqngGMERPG 507
Cdd:COG4913 305 A---RLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALlAAL----GLPLPA 377
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 508 NcRPATKTQRKLAPRRKDDSADLRCQLQfakEEAFLMRKKMAKLGREKDELEQELQKYKS 567
Cdd:COG4913 378 S-AEEFAALRAEAAALLEALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
351-733 |
3.63e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 3.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 351 KDELDELRAEMEEMrDSYLEEDVYQLQELRRELDRANKNcRILQYRLRKAEQ----KSLKVAETG--QVDGElIRSLEQD 424
Cdd:TIGR02169 176 LEELEEVEENIERL-DLIIDEKRQQLERLRREREKAERY-QALLKEKREYEGyellKEKEALERQkeAIERQ-LASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 425 LkvaKDVSVRLHHELKTVEEKRAKAEDENETLRqQMIEVEISkqALQNELERLKessLKRRSTREMYKEKKtfnqnggme 504
Cdd:TIGR02169 253 L---EKLTEEISELEKRLEEIEQLLEELNKKIK-DLGEEEQL--RVKEKIGELE---AEIASLERSIAEKE--------- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 505 rpgncrpatKTQRKLAPRRKDDSADLRCQlqfaKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLptgeagGP 584
Cdd:TIGR02169 315 ---------RELEDAEERLAKLEAEIDKL----LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL------EE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 585 PSTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMedmrgqQEREGPGRDHAPSIPtspfgDSLESSTELrrhlq 664
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL------QRLSEELADLNAAIA-----GIEAKINEL----- 439
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462559939 665 fvEEEAELLRRSISEIEDHNRQLTHELSKFKFEpprepgwlgegASPGAGGGAPLQEELKSARLQISEL 733
Cdd:TIGR02169 440 --EEEKEDKALEIKKQEWKLEQLAADLSKYEQE-----------LYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
353-567 |
4.53e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 353 ELDELRAEMEEMRDsylEEDVYQ--LQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQ-------VDGELIRSLEQ 423
Cdd:TIGR02168 268 KLEELRLEVSELEE---EIEELQkeLYALANEISRLEQQKQILRERLANLERQLEELEAQLEeleskldELAEELAELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 424 DLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQM-------IEVEISKQALQNELERLKE--SSLKRRSTRemykek 494
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLetlrskvAQLELQIASLNNEIERLEArlERLEDRRER------ 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559939 495 ktFNQNGGMERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKS 567
Cdd:TIGR02168 419 --LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
350-687 |
5.27e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 5.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSYLE--------EDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETgqvdGELIRSL 421
Cdd:COG4717 93 LQEELEELEEELEELEAELEElreeleklEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL----EEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 422 EQDLKVAK--------DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKE 493
Cdd:COG4717 169 EAELAELQeeleelleQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 494 KKTFNQNGGM-ERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGR--EKDELEQ-ELQKYKSLY 569
Cdd:COG4717 249 RLLLLIAAALlALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAlpALEELEEeELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 570 GdVDSPLPTGEAGGPPST-----------REAELKLRLKLVEEEANILG-----------RKIVELEVENRGLKAEMEDM 627
Cdd:COG4717 329 G-LPPDLSPEELLELLDRieelqellreaEELEEELQLEELEQEIAALLaeagvedeeelRAALEQAEEYQELKEELEEL 407
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462559939 628 RGQQEREGPGRDHAPSIPTspfGDSLES-STELRRHLQFVEEEAELLRRSISEIEDHNRQL 687
Cdd:COG4717 408 EEQLEELLGELEELLEALD---EEELEEeLEELEEELEELEEELEELREELAELEAELEQL 465
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
350-567 |
8.96e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.42 E-value: 8.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDsyleedvyqlqELRRELDRANKNCRILQYRLRKAEqKSLKVAETG------QVD--GELIRSL 421
Cdd:pfam05483 546 LRDELESVREEFIQKGD-----------EVKCKLDKSEENARSIEYEVLKKE-KQMKILENKcnnlkkQIEnkNKNIEEL 613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 422 EQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQAlQNELERLKESSLkrrsTREMYKEKKTFNQng 501
Cdd:pfam05483 614 HQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQK-EIEDKKISEEKL----LEEVEKAKAIADE-- 686
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559939 502 gmerpgncrpATKTQRKLaprrkddsaDLRCQLQFAkEEAFLMRKKMAKLGREKDELEQELQKYKS 567
Cdd:pfam05483 687 ----------AVKLQKEI---------DKRCQHKIA-EMVALMEKHKHQYDKIIEERDSELGLYKN 732
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
85-331 |
1.40e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 85 PPSPGSLAAPGRLSRRSggVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPlsrAGKPPGAEPPSAAakgrkvkr 164
Cdd:PHA03247 2551 PPPPLPPAAPPAAPDRS--VPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD---RGDPRGPAPPSPL-------- 2617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 165 gsraPPARTVGPPTPAARIPAVTLA------------VTSVAGSPARCSRISHTDSSSDlsdcPSEPLSDEQRLLPAASS 232
Cdd:PHA03247 2618 ----PPDTHAPDPPPPSPSPAANEPdphppptvpppeRPRDDPAPGRVSRPRRARRLGR----AAQASSPPQRPRRRAAR 2689
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 233 DAESGTGSSDREPPRGaPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPV 312
Cdd:PHA03247 2690 PTVGSLTSLADPPPPP-PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768
|
250
....*....|....*....
gi 2462559939 313 PGTPKEPSLGEQSRLVPAA 331
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLTRPA 2787
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
7-264 |
1.77e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 56.40 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 7 PAGGGAPDAKLQPP---GQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGK 83
Cdd:PRK07003 362 VTGGGAPGGGVPARvagAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 84 APPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKVK 163
Cdd:PRK07003 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDA 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 164 RGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCS--RIShtdsssdlsdcpseplSDEQRLLPAASSDAESGTGSS 241
Cdd:PRK07003 522 PAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAgmRVS----------------SDRGARAAAAAKPAAAPAAAP 585
|
250 260
....*....|....*....|....
gi 2462559939 242 DREPPRGA-PTPSPAARGAPPGSP 264
Cdd:PRK07003 586 KPAAPRVAvQVPTPRARAATGDAP 609
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
350-695 |
2.46e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEmrdsyLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQdLKVAK 429
Cdd:PRK03918 219 LREELEKLEKEVKE-----LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 430 DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQNGGMERPGNC 509
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 510 RpATKTQRKLAPRRKDDSADLRCQLQFAKEEaflMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTRE 589
Cdd:PRK03918 373 E-LERLKKRLTGLTPEKLEKELEELEKAKEE---IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 590 AELKLRLKLVEEEANILGRKIvELEVENRGLKAEMEDMRGQQEREgpgRDHAPSIPTSPFGDSLESSTEL--RRHLQFVE 667
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELK-EIEEKERKLRKELRELEKVLKKE---SELIKLKELAEQLKELEEKLKKynLEELEKKA 524
|
330 340
....*....|....*....|....*...
gi 2462559939 668 EEAELLRRSISEIEDHNRQLTHELSKFK 695
Cdd:PRK03918 525 EEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
348-693 |
3.12e-07 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 54.91 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 348 DYLKDELDELRAEMEEMRDsyleedvyQLQELRRELDRANKNCRILQYRLRKAEQKsLKVAETGQvdgeliRSLEQDLKV 427
Cdd:COG4372 41 DKLQEELEQLREELEQARE--------ELEQLEEELEQARSELEQLEEELEELNEQ-LQAAQAEL------AQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 428 AKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKEsslKRRSTREMYKEKKTFNQNggmerpg 507
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEE---QLESLQEELAALEQELQA------- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 508 ncRPATKTQRKLAPRRKddsaDLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPST 587
Cdd:COG4372 176 --LSEAEAEQALDELLK----EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKE 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 588 ---REAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLESSTELRRHLQ 664
Cdd:COG4372 250 ellEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLE 329
|
330 340
....*....|....*....|....*....
gi 2462559939 665 FVEEEAELLRRSISEIEDHNRQLTHELSK 693
Cdd:COG4372 330 LALAILLAELADLLQLLLVGLLDNDVLEL 358
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
6-262 |
3.28e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 55.65 E-value: 3.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 6 GPAGGGAPDAklqppgqhhrHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPaaprspnlAGKAP 85
Cdd:PRK12323 366 GQSGGGAGPA----------TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAA--------PARRS 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 86 PSPGSLAAP-GRLSRRSGGVPGAKDKPPPGAgaraaggakaalgsrrAARVAPAEPLSRAGKPPGAEPPSAAAKGRKVKR 164
Cdd:PRK12323 428 PAPEALAAArQASARGPGGAPAPAPAPAAAP----------------AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 165 GSRAPPARTVGPPTPAARIPAVTLAvtsvagSPARCSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDRE 244
Cdd:PRK12323 492 ADDDPPPWEELPPEFASPAPAQPDA------APAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
|
250
....*....|....*...
gi 2462559939 245 PPRGAPTPSPAARGAPPG 262
Cdd:PRK12323 566 PRASASGLPDMFDGDWPA 583
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
370-697 |
3.46e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 370 EEDVYQLQELRRELDRANKNCRI-----LQYRLRKAEQKSLKVAETGQVDGELIRSLEQdLKVAKDVSVRLHHELktvEE 444
Cdd:TIGR02168 185 RENLDRLEDILNELERQLKSLERqaekaERYKELKAELRELELALLVLRLEELREELEE-LQEELKEAEEELEEL---TA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 445 KRAKAEDENETLRQQMIEVEISKQALQNELERLKE--SSLKRRstREMYKEKktfnqnggMERPGNCRPATKTQRKLAPR 522
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANeiSRLEQQ--KQILRER--------LANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 523 RKD----DSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVdsplptgeaggppSTREAELKLRLKL 598
Cdd:TIGR02168 331 KLDelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL-------------RSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 599 VEEEANILGRKIVELEVENRGLKAEMEDMRGQQErEGPGRDHAPSIPTSPfgdslESSTELRRHLQFVEEEAELLRRSIS 678
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLE-EAELKELQAELEELE-----EELEELQEELERLEEALEELREELE 471
|
330
....*....|....*....
gi 2462559939 679 EIEDHNRQLTHELSKFKFE 697
Cdd:TIGR02168 472 EAEQALDAAERELAQLQAR 490
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
133-383 |
4.04e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 55.38 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 133 ARVAPAEPLSRAGKPPGAEPPSAAAKGRKVKRGSR-APPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSSD 211
Cdd:PRK07764 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAApAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 212 LSDCPSEPLSdeqrllPAASSDAESGTGSSDRePPRGAPTPSPAARGAPPGSPEPPallaaplaagacPGGRSIPSGVSG 291
Cdd:PRK07764 666 GDGWPAKAGG------AAPAAPPPAPAPAAPA-APAGAAPAQPAPAPAATPPAGQA------------DDPAAQPPQAAQ 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 292 GFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVPAAEEEELLREMEELRSEndylkdELDELRAEMEEMRDSYLEE 371
Cdd:PRK07764 727 GASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE------EEEMAEDDAPSMDDEDRRD 800
|
250
....*....|...
gi 2462559939 372 -DVYQLQELRREL 383
Cdd:PRK07764 801 aEEVAMELLEEEL 813
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
443-794 |
5.41e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 5.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 443 EEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNqngGMERPGNCRPATKTQRKLAPR 522
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYE---GYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 523 RkddsADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSlygdvDSPLPTGEAGGPPSTREAELKLRLKLVEEE 602
Cdd:TIGR02169 246 L----ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE-----EEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 603 ANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHApsipTSPFGDSLESSTELRRHLQFVEEEAELLRRSISEIED 682
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL----TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 683 HNRQLTHELSKFKFEPPRepgwLGEGASPGAGGGAPLQEELKSARLQISELSGKVLKLQHENHALLSNIQRcdLAAHLGl 762
Cdd:TIGR02169 393 KLEKLKREINELKRELDR----LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ--LAADLS- 465
|
330 340 350
....*....|....*....|....*....|..
gi 2462559939 763 rapsprDSDAESDAGKKESDGEESRLPQPKRE 794
Cdd:TIGR02169 466 ------KYEQELYDLKEEYDRVEKELSKLQRE 491
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
81-331 |
5.62e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 54.86 E-value: 5.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 81 AGKAPPS-PGSLAAPGrlsRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKG 159
Cdd:PRK07003 369 GGGVPARvAGAVPAPG---ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADG 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 160 RKVKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARcsrishtdsssdlSDCPSEPLSdeqrllPAASSDAESGTG 239
Cdd:PRK07003 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP-------------PDAAFEPAP------RAAAPSAATPAA 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 240 SSDREPPRGAPTPSPAARGAPPgSPEPPALLAAPLAAGACPGG---------------RSIPSGVSGGFAGPGVAEDVRG 304
Cdd:PRK07003 507 VPDARAPAAASREDAPAAAAPP-APEARPPTPAAAAPAARAGGaaaaldvlrnagmrvSSDRGARAAAAAKPAAAPAAAP 585
|
250 260 270
....*....|....*....|....*....|
gi 2462559939 305 RSPPER---PVPgTPKEPSLGEQSRLVPAA 331
Cdd:PRK07003 586 KPAAPRvavQVP-TPRARAATGDAPPNGAA 614
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
39-317 |
6.00e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 54.79 E-value: 6.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 39 HRAPSPARPFLKDLHARPAA--PGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAP---GRLSRRSGGVPGAKDKP-P 112
Cdd:PHA03307 118 PPTPPPASPPPSPAPDLSEMlrPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPlssPEETARAPSSPPAEPPPsT 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 113 PGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKVKRGSRA-----PPARTVGPPTPAARIPAVT 187
Cdd:PHA03307 198 PPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENecplpRPAPITLPTRIWEASGWNG 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 188 LAVTSVAGSPARCSRISHTDSSSDLSDCPSEP----LSDEQRLLPAASSDAESGTGSSDREP--PRGA-----PTPSPAA 256
Cdd:PHA03307 278 PSSRPGPASSSSSPRERSPSPSPSSPGSGPAPssprASSSSSSSRESSSSSTSSSSESSRGAavSPGPspsrsPSPSRPP 357
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462559939 257 RGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPK 317
Cdd:PHA03307 358 PPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLD 418
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
350-634 |
8.42e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 8.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDsyleedvyQLQELRRELDRANKNCRILQYRLRKAEQKslkvaetgqvdgelIRSLEQDLKVAK 429
Cdd:COG1196 258 LEAELAELEAELEELRL--------ELEELELELEEAQAEEYELLAELARLEQD--------------IARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 430 DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKtfnqnggmerpgnc 509
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL-------------- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 510 rpATKTQRKLAPRRkdDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVdsplptgeaggppSTRE 589
Cdd:COG1196 382 --EELAEELLEALR--AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE-------------EEAL 444
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462559939 590 AELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQERE 634
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
350-750 |
1.51e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRD------SYLEEDVYQLQELRRELDRANKNCRILQYRLR--KAEQKSLKvaetGQVDGELIRSL 421
Cdd:TIGR04523 237 KQQEINEKTTEISNTQTqlnqlkDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNqlKSEISDLN----NQKEQDWNKEL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 422 EQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERlKESSLKRrstreMYKEKKTFNQNg 501
Cdd:TIGR04523 313 KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEE-KQNEIEK-----LKKENQSYKQE- 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 502 gmerpgncrpatktQRKLaprrKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEa 581
Cdd:TIGR04523 386 --------------IKNL----ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 582 ggppsTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMrgQQEREGPGRDHapSIPTSPFGDSLESSTELRR 661
Cdd:TIGR04523 447 -----NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK--QKELKSKEKEL--KKLNEEKKELEEKVKDLTK 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 662 HLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFepprepgwlgegaspgagggaplqeELKSARL--QISELSGKVLK 739
Cdd:TIGR04523 518 KISSLKEKIEKLESEKKEKESKISDLEDELNKDDF-------------------------ELKKENLekEIDEKNKEIEE 572
|
410
....*....|.
gi 2462559939 740 LQHENHALLSN 750
Cdd:TIGR04523 573 LKQTQKSLKKK 583
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
346-484 |
1.53e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 346 ENDYLKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDL 425
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLRAELEEVDK-EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462559939 426 KVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKE--SSLKR 484
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKelSKLQR 490
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
346-920 |
1.57e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.51 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 346 ENDYLKDE----LDELRAEMEEMRD-SYLEEDVYQLQELRRelDRANKNCRILQYRLRKAEQKSLKVAE---TGQVDgEL 417
Cdd:TIGR00606 502 EVKSLQNEkadlDRKLRKLDQEMEQlNHHTTTRTQMEMLTK--DKMDKDEQIRKIKSRHSDELTSLLGYfpnKKQLE-DW 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 418 IRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVE------ISKQALQNELERLKESSLKRRSTREMY 491
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEdklfdvCGSQDEESDLERLKEEIEKSSKQRAML 658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 492 KEK----KTFNQNGGMERPGNCrPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKS 567
Cdd:TIGR00606 659 AGAtavySQFITQLTDENQSCC-PVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS 737
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 568 LYGDVDSPLP-TGEAGGPPSTREAELKLRLklvEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPT 646
Cdd:TIGR00606 738 IIDLKEKEIPeLRNKLQKVNRDIQRLKNDI---EEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK 814
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 647 SPFGDSLESSTELRrhlQFVEEEAELLRRSISEIE-------DHNRQLTHELSKFKfepprepgwlgegaspgagggapl 719
Cdd:TIGR00606 815 LQGSDLDRTVQQVN---QEKQEKQHELDTVVSKIElnrkliqDQQEQIQHLKSKTN------------------------ 867
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 720 qeELKSARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLGLRAPSPRDSDAESDAGKKE----SDGEESRLPQPKREg 795
Cdd:TIGR00606 868 --ELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEelisSKETSNKKAQDKVN- 944
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 796 pvggesDSEEMFEKTSGFGSGKPSEASEPCPTELL-KAREDSEYLVTLKHEAQRLERTVERLITDTDSFlhdaglrggap 874
Cdd:TIGR00606 945 ------DIKEKVKNIHGYMKDIENKIQDGKDDYLKqKETELNTVNAQLEECEKHQEKINEDMRLMRQDI----------- 1007
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 2462559939 875 lpgpGLQGEEERGEGDQQEpqlLGTINAKMKAFKKELQAFLEQVNR 920
Cdd:TIGR00606 1008 ----DTQKIQERWLQDNLT---LRKRENELKEVEEELKQHLKEMGQ 1046
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
60-265 |
2.81e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 52.68 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 60 GPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAE 139
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 140 PLSRAGKPPGAEPPSAAAKGRKVKRGSRAPPARTVGPPTPAARipavtlAVTSVAGSPARCSRISHTDSSSDLSDCPSEP 219
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG------QADDPAAQPPQAAQGASAPSPAADDPVPLPP 743
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462559939 220 LSDEQRLLPAASSDAESGTGSSDREPPrgAPTPSPAARGAPPGSPE 265
Cdd:PRK07764 744 EPDDPPDPAGAPAQPPPPPAPAPAAAP--AAAPPPSPPSEEEEMAE 787
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
350-614 |
3.18e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSY---------LEEDVY----QLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGE 416
Cdd:COG1196 272 LRLELEELELELEEAQAEEyellaelarLEQDIArleeRRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 417 LIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKT 496
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 497 FNQnggmERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDvdspl 576
Cdd:COG1196 432 ELE----EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD----- 502
|
250 260 270
....*....|....*....|....*....|....*...
gi 2462559939 577 ptgEAGGPPSTREAELKLRLKLVEEEANILGRKIVELE 614
Cdd:COG1196 503 ---YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
351-644 |
3.58e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 351 KDELDELR---AEMEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLkv 427
Cdd:TIGR00606 244 ENELDPLKnrlKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKEREL-- 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 428 akdvsVRLHHELKtveekraKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREmykEKKTFNQNGGMERPG 507
Cdd:TIGR00606 322 -----VDCQRELE-------KLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQ---SLATRLELDGFERGP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 508 NCRPATKTQRKLAPRRKDDSA--------DLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTG 579
Cdd:TIGR00606 387 FSERQIKNFHTLVIERQEDEAktaaqlcaDLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL 466
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559939 580 EaGGPPSTREAELKLR-----LKLVEEEANILGRKIVELEVEN------RGLKAEMEDMRgQQEREGPGRDHAPSI 644
Cdd:TIGR00606 467 E-GSSDRILELDQELRkaereLSKAEKNSLTETLKKEVKSLQNekadldRKLRKLDQEME-QLNHHTTTRTQMEML 540
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
350-485 |
4.16e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRANKncrilqyRLRKAEQKSLKVAetgqvdgELIRSLEQDLKVAK 429
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGGDRLEQLEREIERLER-------ELEERERRRARLE-------ALLAALGLPLPASA 379
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462559939 430 DVSVRLHHELKtveEKRAKAEDENETLRQQMIEVEISKQALQNELERLKE--SSLKRR 485
Cdd:COG4913 380 EEFAALRAEAA---ALLEALEEELEALEEALAEAEAALRDLRRELRELEAeiASLERR 434
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-634 |
5.70e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 351 KDELDELRAEMEEMRDSylEEDVYQLQELRRELDRANKNCRILQY--RLRKAEQK----SLKVAETGQVDGELIRSLE-- 422
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADEAKKAAEAKKKadEAKKAEEAkkadEAKKAEEAKKADEAKKAEEkk 1546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 423 --QDLKVAKDVsvRLHHELKTVEEKRAKAEDENETLRQqmieVEISKQAlqnELERLKESSLKRRSTREMYKE--KKTFN 498
Cdd:PTZ00121 1547 kaDELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRK----AEEAKKA---EEARIEEVMKLYEEEKKMKAEeaKKAEE 1617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 499 QNGGMERpgnCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEaflmRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPT 578
Cdd:PTZ00121 1618 AKIKAEE---LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE----EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559939 579 GEAggppSTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQERE 634
Cdd:PTZ00121 1691 AEA----LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
345-686 |
6.35e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 6.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 345 SENDYLKDELDELRAEMEEMRDsyleedvyQLQELRRELDRANKNCRILQYRLRKAEQKslkvaetgqvdgelIRSLEQD 424
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASR--------KIGEIEKEIEQLEQEEEKLKERLEELEED--------------LSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 425 LKVAKDVSVRLHHELKTVEEKRAKAEDENETL-----RQQMIEVEISKQALQNELERLK------ESSLKRRSTREMYKE 493
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEarlreiEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 494 KKtfnqnggMERPGNCRPATKTQRKLAPRRKDDS-ADLRCQLQFAKE-EAFL--MRKKMAKLGREKDELEQELQKYKSLY 569
Cdd:TIGR02169 833 KE-------IQELQEQRIDLKEQIKSIEKEIENLnGKKEELEEELEElEAALrdLESRLGDLKKERDELEAQLRELERKI 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 570 GDVDSPLPTGEaggppsTREAELKLRLKLVEEEANILGRKIVELEVEN------RGLKAEMEDMRGQQEREGPGRDHAPs 643
Cdd:TIGR02169 906 EELEAQIEKKR------KRLSELKAKLEALEEELSEIEDPKGEDEEIPeeelslEDVQAELQRVEEEIRALEPVNMLAI- 978
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2462559939 644 iptSPFGDSLESSTELRRHLQFVEEEAELLRRSISEIEDHNRQ 686
Cdd:TIGR02169 979 ---QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
54-313 |
7.90e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 51.00 E-value: 7.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 54 ARPAAPGPAVPSS-----GRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKD-------KPPPGAGARAAG 121
Cdd:PRK07003 361 AVTGGGAPGGGVParvagAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATraeappaAPAPPATADRGD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 122 GAKAALGSRRAARVAPAEPLSRAGkPPGAEPPSAAAKgrKVKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCS 201
Cdd:PRK07003 441 DAADGDAPVPAKANARASADSRCD-ERDAQPPADSGS--ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 202 RishtdssSDLSDCPSEPLSDEQRLLPAASSDAESGTG---------------SSDREPPRGAPTPSPAARGAPPGSPEP 266
Cdd:PRK07003 518 R-------EDAPAAAAPPAPEARPPTPAAAAPAARAGGaaaaldvlrnagmrvSSDRGARAAAAAKPAAAPAAAPKPAAP 590
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2462559939 267 PALLAAPLaagacPGGRSIPSGVSGGFAGPGV-AEDVRGRSPPERPVP 313
Cdd:PRK07003 591 RVAVQVPT-----PRARAATGDAPPNGAARAEqAAESRGAPPPWEDIP 633
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-566 |
1.00e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 358 RAEMEEMRDSYLEEDVYQLQELRREldranKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAKDVSVRLHH 437
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKA-----EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 438 ELKTVEEKRAKAEdenETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYK--EKKTFNQNGGMERPGNCRPATKT 515
Cdd:PTZ00121 1666 EAKKAEEDKKKAE---EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeELKKAEEENKIKAEEAKKEAEED 1742
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462559939 516 QRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYK 566
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
350-695 |
1.12e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 50.51 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEmRDSYLEEDVYQLQELRRELDRANKNCR---ILQYRLRKAeQKSLKVAEtgQVDGELIRSL---EQ 423
Cdd:pfam05557 109 LKNELSELRRQIQR-AELELQSTNSELEELQERLDLLKAKASeaeQLRQNLEKQ-QSSLAEAE--QRIKELEFEIqsqEQ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 424 DLKVAKDVSVRLHhELKTVEEKRAKAEDENETLRQQMIEVEISKQ---ALQNELERLKES-------SLKRRSTREMYKE 493
Cdd:pfam05557 185 DSEIVKNSKSELA-RIPELEKELERLREHNKHLNENIENKLLLKEeveDLKRKLEREEKYreeaatlELEKEKLEQELQS 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 494 KKTFNQNGGME--RPGNCRPATKT--QRKLAPRRKDDSAD-----LRCQLQFAKEEAFLMRKKMAKL--GREK-DELEQE 561
Cdd:pfam05557 264 WVKLAQDTGLNlrSPEDLSRRIEQlqQREIVLKEENSSLTssarqLEKARRELEQELAQYLKKIEDLnkKLKRhKALVRR 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 562 LQK-----------YKSLYGDVDSPLPTGEAGGPPSTREAEL-----KLRLKLVEEEANI--LGRKIVELEVENRGLKAE 623
Cdd:pfam05557 344 LQRrvllltkerdgYRAILESYDKELTMSNYSPQLLERIEEAedmtqKMQAHNEEMEAQLsvAEEELGGYKQQAQTLERE 423
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559939 624 MEDMRGQQEREGPGRdhapsiptspfgdSLESSTELRRHLQFVEEEAELLRRSI----SEIEDHNRQLTHELSKFK 695
Cdd:pfam05557 424 LQALRQQESLADPSY-------------SKEEVDSLRRKLETLELERQRLREQKneleMELERRCLQGDYDPKKTK 486
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
350-695 |
1.25e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEmrdsyLEEDVYQLQELRRELDRANK--------NCRILQYRLRKAEQKSLKVAETGQVDGELIRSL 421
Cdd:PRK03918 343 LKKKLKELEKRLEE-----LEERHELYEEAKAKKEELERlkkrltglTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 422 EQ----------DLKVAK----------------DVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVE--ISKQ----A 469
Cdd:PRK03918 418 KKeikelkkaieELKKAKgkcpvcgrelteehrkELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvLKKEseliK 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 470 LQNELERLK--ESSLKRRSTREMYKEKKTF----NQNGGMErpGNCRPATKTQRKLAPRRKdDSADLRCQLQFAKEEAFL 543
Cdd:PRK03918 498 LKELAEQLKelEEKLKKYNLEELEKKAEEYeklkEKLIKLK--GEIKSLKKELEKLEELKK-KLAELEKKLDELEEELAE 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 544 MRKKMAKLGREK-DELEQELQKYKSLYGDVDsplptgEAGGPPSTREAELKlRLKLVEEEANILGRKIVELEVENRGLKA 622
Cdd:PRK03918 575 LLKELEELGFESvEELEERLKELEPFYNEYL------ELKDAEKELEREEK-ELKKLEEELDKAFEELAETEKRLEELRK 647
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559939 623 EMEDMR---GQQEREGPGRDHapsiptspfgdslessTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFK 695
Cdd:PRK03918 648 ELEELEkkySEEEYEELREEY----------------LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
375-564 |
3.02e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 48.98 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 375 QLQELRRELDRANKNcriLQYRLRKAEQKSLKVAETGQVD----GELIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAE 450
Cdd:pfam07111 482 ELEQLREERNRLDAE---LQLSAHLIQQEVGRAREQGEAErqqlSEVAQQLEQELQRAQESLASVGQQLEVARQGQQEST 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 451 DENETLRQQMI-EVEISKQALQN---ELE-RLKE--SSLKRR---STREMYKEKKTFNQnggmerpgncrpatkTQRKlA 520
Cdd:pfam07111 559 EEAASLRQELTqQQEIYGQALQEkvaEVEtRLREqlSDTKRRlneARREQAKAVVSLRQ---------------IQHR-A 622
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462559939 521 PRRKDDSADL-RCQLQFAKEEAFLMRKKMAKLGREKDELEQELQK 564
Cdd:pfam07111 623 TQEKERNQELrRLQDEARKEEGQRLARRVQELERDKNLMLATLQQ 667
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
6-264 |
3.50e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.17 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 6 GPAGGGAPDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGP----AVPSSGRAPAPAAPRSPNLA 81
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPpptsAQPTAPPPPPGPPPPSLPLG 2853
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 82 GKAPP------------SPGSLAAPGR----------LSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAE 139
Cdd:PHA03247 2854 GSVAPggdvrrrppsrsPAAKPAAPARppvrrlarpaVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP 2933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 140 PLSRAGKPPGAEPPSAAAKGR-----------KVKRGSRAPPARTVGPPTPAARIPAVTlaVTSVAGSPArcSRISHTDS 208
Cdd:PHA03247 2934 PPPPRPQPPLAPTTDPAGAGEpsgavpqpwlgALVPGRVAVPRFRVPQPAPSREAPASS--TPPLTGHSL--SRVSSWAS 3009
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 209 SSDLS-DCPSEPLSDEQRLLPAASSDAESGTGSSDREPPR---GAPTPSPAARGAPPGSP 264
Cdd:PHA03247 3010 SLALHeETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERsdlEALDPLPPEPHDPFAHE 3069
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-800 |
3.81e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 3.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 352 DELDELRAEMEEmrdsyleedvyQLQELRRELDRANKNcRILQYRLRKAEQKSLKVAetgqvdgelIRSLEQDLKVAKDV 431
Cdd:COG1196 189 ERLEDILGELER-----------QLEPLERQAEKAERY-RELKEELKELEAELLLLK---------LRELEAELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 432 SVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQNggmerpgncrp 511
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE----------- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 512 atktqrklapRRKDDSADLRcQLQFAKEEAflmRKKMAKLGREKDELEQELQkykslygdvdsplptgeaggppSTREAE 591
Cdd:COG1196 317 ----------RLEELEEELA-ELEEELEEL---EEELEELEEELEEAEEELE----------------------EAEAEL 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 592 LKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHApsiptspfgdslESSTELRRHLQFVEEEAE 671
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE------------ALLERLERLEEELEELEE 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 672 LLRRSISEIEDHNRQLTHELSKfkfepprepgwlgegaspgaggGAPLQEELKSARLQISELSGKVLKLQHENHALLSNI 751
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEE----------------------EAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2462559939 752 QRCDLAAHLGLRApsprdsdAESDAGKKESDGEESRLPQPKREGPVGGE 800
Cdd:COG1196 487 AEAAARLLLLLEA-------EADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
59-261 |
5.18e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.33 E-value: 5.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 59 PGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPgrlsrrsgGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPA 138
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPA--------APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAA 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 139 EPLSRAGKPPGAEPPSAAAkgrkvkrgsrAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSS--SDLSDCP 216
Cdd:PRK12323 437 RQASARGPGGAPAPAPAPA----------AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpwEELPPEF 506
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462559939 217 SEPLSDEQRLLPA-ASSDAESGTGSSDREPPRGAPTPSPAARGAPP 261
Cdd:PRK12323 507 ASPAPAQPDAAPAgWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
41-297 |
5.78e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.24 E-value: 5.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 41 APSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPgsLAAPGRLSRRSGGVPGAKDKPPPGAGARAA 120
Cdd:PHA03307 48 AELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTL--APASPAREGSPTPPGPSSPDPPPPTPPPAS 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 121 GGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKVKRGSRAPPARTVGPPTPAARIPAVTLAV-TSVAGSPAR 199
Cdd:PHA03307 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPsTPPAAASPR 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 200 CSRISHTDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPA--------ARGAPPGSPEPPALLA 271
Cdd:PHA03307 206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPApitlptriWEASGWNGPSSRPGPA 285
|
250 260
....*....|....*....|....*.
gi 2462559939 272 APLAAGACPGGRSIPSGVSGGFAGPG 297
Cdd:PHA03307 286 SSSSSPRERSPSPSPSSPGSGPAPSS 311
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
86-218 |
1.08e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 47.37 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 86 PSPGSLAAPGRLSRRSGGVPGAKDKPPPGagaraaggakaalgSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGRKVKRG 165
Cdd:PRK14959 373 PSGGGASAPSGSAAEGPASGGAATIPTPG--------------TQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462559939 166 SRAPPARTVGPPTPAARIPavtlAVTSVAGSPARCSRISHTDSSSDLSDCPSE 218
Cdd:PRK14959 439 APPAPPRSGIPPRPAPRMP----EASPVPGAPDSVASASDAPPTLGDPSDTAE 487
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
350-494 |
1.12e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDG---ElIRSLEQDLK 426
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKT-ELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEAlqkE-IESLKRRIS 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462559939 427 VAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVeisKQALQNELERLKESSLKRRSTREMYKEK 494
Cdd:COG1579 107 DLEDEILELMERIEELEEELAELEAELAELEAELEEK---KAELDEELAELEAELEELEAEREELAAK 171
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
354-584 |
1.52e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 354 LDELRAEMEEmrdsyLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGElIRSLEQDLKVAKDVSV 433
Cdd:COG4913 612 LAALEAELAE-----LEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAERE-IAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 434 rlhhELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESslkrrstremykekktfnqnggmerpgncRPAT 513
Cdd:COG4913 686 ----DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-----------------------------LDEL 732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 514 KTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKM------------AKLGREKDELEQELQKYKSLYGDVDSPLPTGEA 581
Cdd:COG4913 733 QDRLEAAEDLARLELRALLEERFAAALGDAVERELrenleeridalrARLNRAEEELERAMRAFNREWPAETADLDADLE 812
|
...
gi 2462559939 582 GGP 584
Cdd:COG4913 813 SLP 815
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
350-479 |
1.64e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 46.39 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSYL--EEDVYQLQELRRELDRANKNCRILQYRLRKAEQ-------------KSLKVAETGQVD 414
Cdd:pfam06160 303 AEEQNKELKEELERVQQSYTlnENELERVRGLEKQLEELEKRYDEIVERLEEKEVayselqeeleeilEQLEEIEEEQEE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 415 G-ELIRSLEQDLKVAKDVSVRLHHELKTVE---EKR-------------AKAEDENETLRQQMIEV-----EISKQAL-- 470
Cdd:pfam06160 383 FkESLQSLRKDELEAREKLDEFKLELREIKrlvEKSnlpglpesyldyfFDVSDEIEDLADELNEVplnmdEVNRLLDea 462
|
....*....
gi 2462559939 471 QNELERLKE 479
Cdd:pfam06160 463 QDDVDTLYE 471
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
352-616 |
1.68e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 352 DELDELRAEMEEMRDsyleedvyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETgqvdgelIRSLEQDLKVAKDv 431
Cdd:COG4942 20 DAAAEAEAELEQLQQ--------EIAELEKELAALKKEEKALLKQLAALERRIAALARR-------IRALEQELAALEA- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 432 svrlhhELKTVEEKRAKAEDENETLRQQMIEV--EISKQALQNELERLkessLKRRSTREMYKEKKTFNQnggmerpgnc 509
Cdd:COG4942 84 ------ELAELEKEIAELRAELEAQKEELAELlrALYRLGRQPPLALL----LSPEDFLDAVRRLQYLKY---------- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 510 rpATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVdsplptgeaggppSTRE 589
Cdd:COG4942 144 --LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARL-------------EKEL 208
|
250 260
....*....|....*....|....*..
gi 2462559939 590 AELKLRLKLVEEEANILGRKIVELEVE 616
Cdd:COG4942 209 AELAAELAELQQEAEELEALIARLEAE 235
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
356-687 |
1.74e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.67 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 356 ELRAEMEEMRDSyLEEDVYQLQELRRELDRANKNCRILQYRLRKaeqkslKVAETgQVDGELIRSLEQDLKVAKDVSVRL 435
Cdd:pfam07111 321 QLKAQDLEHRDS-VKQLRGQVAELQEQVTSQSQEQAILQRALQD------KAAEV-EVERMSAKGLQMELSRAQEARRRQ 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 436 HHELKTVEEKrakaedenetLRQQMIEVEISKQALQNELERLKESS--LKRRSTREMYKEKKTFNQNGGMERPGNCRPAT 513
Cdd:pfam07111 393 QQQTASAEEQ----------LKFVVNAMSSTQIWLETTMTRVEQAVarIPSLSNRLSYAVRKVHTIKGLMARKVALAQLR 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 514 KTQRKLAPRRKDDSADLRCQLQFAKEE-----------AFLMRKKMAKlGREKDE------------LEQELQKYKSLYG 570
Cdd:pfam07111 463 QESCPPPPPAPPVDADLSLELEQLREErnrldaelqlsAHLIQQEVGR-AREQGEaerqqlsevaqqLEQELQRAQESLA 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 571 DVDSPLPTGEAGGPPSTREAElKLRLKLVEEEaNILGRKIVE--LEVENRgLKAEMEDM--RGQQERegpgRDHAPSIPT 646
Cdd:pfam07111 542 SVGQQLEVARQGQQESTEEAA-SLRQELTQQQ-EIYGQALQEkvAEVETR-LREQLSDTkrRLNEAR----REQAKAVVS 614
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2462559939 647 -----SPFGDSLESSTELRR-HLQFVEEEAELLRRSISEIE-DHNRQL 687
Cdd:pfam07111 615 lrqiqHRATQEKERNQELRRlQDEARKEEGQRLARRVQELErDKNLML 662
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-687 |
1.74e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 351 KDELDELRaEMEEMRDSyleEDVYQLQELRRELDRANKNCRILQyRLRKAEQK------------------SLKVAETGQ 412
Cdd:PTZ00121 1545 KKKADELK-KAEELKKA---EEKKKAEEAKKAEEDKNMALRKAE-EAKKAEEArieevmklyeeekkmkaeEAKKAEEAK 1619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 413 VDGELIRSLEQDLKVAKDVSVRLHHELKTVEEKRaKAEDENETLRQQMieveiskqALQNELERLKESSLKRRSTREMYK 492
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK-KAEEENKIKAAEE--------AKKAEEDKKKAEEAKKAEEDEKKA 1690
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 493 EKKTFNQNGGMERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDV 572
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 573 DSPLPTGEAGGPPSTREAELKLRLKLVEEEANILGRKIVELEVENRG-----LKAEMEDMRGQQ--EREGPGRDHAPSIP 645
Cdd:PTZ00121 1771 EEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlvinDSKEMEDSAIKEvaDSKNMQLEEADAFE 1850
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2462559939 646 TSPFGDSLESSTELRRHLQFvEEEAELLRRSISEIE--DHNRQL 687
Cdd:PTZ00121 1851 KHKFNKNNENGEDGNKEADF-NKEKDLKEDDEEEIEeaDEIEKI 1893
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
144-264 |
1.83e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 46.63 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 144 AGKPPGAEPPSAAAKGRKVKRGSRAPPARTVGPPTPAARIPAVTL-AVTSVAGSPArcSRISHTDSSSDLSDCPSEPLSD 222
Cdd:PRK14951 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPaAAASAPAAPP--AAAPPAPVAAPAAAAPAAAPAA 440
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2462559939 223 EQRLLPAASSDAESGTGSSDREPPRGAPTPSPA-ARGAPPGSP 264
Cdd:PRK14951 441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAVAsAAPAPAAAP 483
|
|
| PBP1 |
COG5180 |
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
13-319 |
2.21e-04 |
|
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];
Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 46.21 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 13 PDAKLQPPGQHHRHHHLHPVAERrrLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLA 92
Cdd:COG5180 158 SDPILAKDPDGDSASTLPPPAEK--LDKVLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLTGGADHPRPEAASSPKVD 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 93 APGRLSRRSGgvPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAA-AKGRKVKRGSRAPPA 171
Cdd:COG5180 236 PPSTSEARSR--PATVDAQPEMRPPADAKERRRAAIGDTPAAEPPGLPVLEAGSEPQSDAPEAEtARPIDVKGVASAPPA 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 172 RTVGPPTPAAR---IPAVTLAVTSVAGSPARCSRISHTDSSSDlsdcPSEPLSDEQRLLPAASSDAESGTGSSDREPPRG 248
Cdd:COG5180 314 TRPVRPPGGARdpgTPRPGQPTERPAGVPEAASDAGQPPSAYP----PAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNG 389
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462559939 249 APTPSPaARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAedvrgRSPPERPVPGTPKEP 319
Cdd:COG5180 390 APQPGL-GRRGAPGPPMGAGDLVQAALDGGGRETASLGGAAGGAGQGPKAD-----FVPGDAESVSGPAGL 454
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
350-500 |
2.36e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVA- 428
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEE-QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAe 434
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559939 429 -KDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQN 500
Cdd:TIGR02168 435 lKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
82-326 |
4.75e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.55 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 82 GKAPPSPGSLAAPGRLSRRSGGvPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAG-------KPPGAEPPS 154
Cdd:PHA03307 69 TGPPPGPGTEAPANESRSTPTW-SLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPApdlsemlRPVGSPGPP 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 155 AAAKGRKVKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAG----SPARCSRISHTDSSSDLSDcPSEPLSDEQRLLPAA 230
Cdd:PHA03307 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSppaePPPSTPPAAASPRPPRRSS-PISASASSPAPAPGR 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 231 SSDAESGTGSSDREPPRGAPTPSpAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPgvaedvRGRSPPer 310
Cdd:PHA03307 227 SAADDAGASSSDSSSSESSGCGW-GPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSP------RERSPS-- 297
|
250
....*....|....*.
gi 2462559939 311 PVPGTPKEPSLGEQSR 326
Cdd:PHA03307 298 PSPSSPGSGPAPSSPR 313
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
338-693 |
5.16e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 338 REMEELRSENDYLKDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRankncRILQYRLRKAEQKSLKvaetgqVDGEL 417
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE-----YLLYLDYLKLNEERID------LLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 418 IRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDEnetlrQQMIEVEISKQALQNELERLKESSLKRRSTREmyKEKKTF 497
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE-----KKLQEEELKLLAKEEEELKSELLKLERRKVDD--EEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 498 NQNggmerpgncrPATKTQRKLAPRRKDdsadlrcQLQFAKEEAFLMRKKmAKLGREKDELEQELQKYKSLYGDVDSPLP 577
Cdd:pfam02463 319 SEK----------EKKKAEKELKKEKEE-------IEELEKELKELEIKR-EAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 578 TGEAGGPPSTREAELKLRLKLVEEeaNILGRKIVELEVENRGLKAEMEDMRGQQEREGpgrdhapsiptsPFGDSLESST 657
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEE--KEAQLLLELARQLEDLLKEEKKEELEILEEEE------------ESIELKQGKL 446
|
330 340 350
....*....|....*....|....*....|....*.
gi 2462559939 658 ELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSK 693
Cdd:pfam02463 447 TEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
102-323 |
5.84e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.98 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 102 GGVPGAKDKPPPGAGARAAGGAKAalgSRRAARVAPAEPlSRAGKPPGAEPPSAAAkgrkvkrgsrAPPARTVGPPTPAA 181
Cdd:PRK07764 589 GPAPGAAGGEGPPAPASSGPPEEA---ARPAAPAAPAAP-AAPAPAGAAAAPAEAS----------AAPAPGVAAPEHHP 654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 182 RIPAVTLAVTSVAGSPArcsrishtDSSSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPP 261
Cdd:PRK07764 655 KHVAVPDASDGGDGWPA--------KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQ 726
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462559939 262 GSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGE 323
Cdd:PRK07764 727 GASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAED 788
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
12-265 |
6.35e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.98 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 12 APDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPflkdlhARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSL 91
Cdd:PRK07764 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAP------AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 92 AAPGRLSRRSGGVPGAKDKPPPGAGARAaggakaalgSRRAARVAPAEPlsrAGKPPGAEPPSAAAKGRkvkrgSRAPPA 171
Cdd:PRK07764 657 VAVPDASDGGDGWPAKAGGAAPAAPPPA---------PAPAAPAAPAGA---APAQPAPAPAATPPAGQ-----ADDPAA 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 172 RTVGPPTPAARIPAVTLAVTSVAGSParcsrishtdsssDLSDCPSEPLSDEQrllPAASSDAESGTGSSDREPPRGAPT 251
Cdd:PRK07764 720 QPPQAAQGASAPSPAADDPVPLPPEP-------------DDPPDPAGAPAQPP---PPPAPAPAAAPAAAPPPSPPSEEE 783
|
250
....*....|....
gi 2462559939 252 PSPAARGAPPGSPE 265
Cdd:PRK07764 784 EMAEDDAPSMDDED 797
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
349-569 |
7.19e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 349 YLKDELDELRAEMEEMRDsYLEEdvyQLQELRRELDRANKncRILQYRlrkAEQKSLKVAETGQVDGELIRSLEQDLKVA 428
Cdd:COG3206 161 YLEQNLELRREEARKALE-FLEE---QLPELRKELEEAEA--ALEEFR---QKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 429 KDVSVRLHHELKTVEEKRAKAEDEN---------ETLRQQMIEVEiskQALQNELERLKESSLKRRSTREMYKEKKTFNQ 499
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALpellqspviQQLRAQLAELE---AELAELSARYTPNHPDVIALRAQIAALRAQLQ 308
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 500 nggmERPGNCRPATKTQRKLAPRRKddsADLRCQLQFAKEEAflmrKKMAKLGREKDELEQELQKYKSLY 569
Cdd:COG3206 309 ----QEAQRILASLEAELEALQARE---ASLQAQLAQLEARL----AELPELEAELRRLEREVEVARELY 367
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
346-496 |
7.77e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 7.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 346 ENDYLKDELDELRAE--MEEMRDSYLEEDVYQLQELRRELDRANKN--CRILQYRLRKAEQKSLKVAETgQVDGELIRSL 421
Cdd:pfam17380 390 KNERVRQELEAARKVkiLEEERQRKIQQQKVEMEQIRAEQEEARQRevRRLEEERAREMERVRLEEQER-QQQVERLRQQ 468
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559939 422 EQDLKVAKDVSVRLHHELKTVEEKRAKA-EDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKT 496
Cdd:pfam17380 469 EEERKRKKLELEKEKRDRKRAEEQRRKIlEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRK 544
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
350-634 |
8.63e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQK------SLKVAETGQVDGELIRSLEQ 423
Cdd:COG4717 168 LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEleeleeELEQLENELEAAALEERLKE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 424 DLKVAKDVSVRL------------------------------------HHELKTVEEKRAKAEDENETLRQQMIEVEISK 467
Cdd:COG4717 248 ARLLLLIAAALLallglggsllsliltiagvlflvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAA 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 468 QALQNELERLKESSLKRR--STREMYKEKKTFNQnggmerpgncrpatktQRKLAPRRKDDSADLRcQLQFAKEEAFLMR 545
Cdd:COG4717 328 LGLPPDLSPEELLELLDRieELQELLREAEELEE----------------ELQLEELEQEIAALLA-EAGVEDEEELRAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 546 kkmAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPST---REAELKLRLKLVEEEANILGRKIVELEVENRGLKA 622
Cdd:COG4717 391 ---LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEleeELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
330
....*....|..
gi 2462559939 623 EMEDMRGQQERE 634
Cdd:COG4717 468 DGELAELLQELE 479
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
149-314 |
8.98e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.48 E-value: 8.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 149 GAEPPSAAAKGRKVKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRishtdsssdlsdcpseplsdeqRLLP 228
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA----------------------RRSP 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 229 AASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSGVSGGFAGPGVAEDVrgrsPP 308
Cdd:PRK12323 429 APEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEEL----PP 504
|
....*.
gi 2462559939 309 ERPVPG 314
Cdd:PRK12323 505 EFASPA 510
|
|
| DUF4201 |
pfam13870 |
Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. ... |
376-479 |
9.72e-04 |
|
Domain of unknown function (DUF4201); This is a family of coiled-coil proteins from eukaryotes. The function is not known.
Pssm-ID: 464008 [Multi-domain] Cd Length: 177 Bit Score: 42.21 E-value: 9.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 376 LQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQ----VD-----------GELIRSLEQDLKVAKDVSVRLHHELK 440
Cdd:pfam13870 1 MRAKRNELSKLRLELITLKHTLAKIQEKLEQKEELGEgltmIDflqlqienqalNEKIEERNKELKRLKLKVTNTVHALT 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462559939 441 TVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKE 479
Cdd:pfam13870 81 HLKEKLHFLSAELSRLKKELRERQELLAKLRKELYRVKL 119
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
130-313 |
1.14e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.01 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 130 RRAARVAPAEPLSRA-GKPPGAEPPSAAAKGRKVKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDS 208
Cdd:PHA03307 742 RRARARASAWDITDAlFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS 821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 209 SSDLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACPGGRSIPSG 288
Cdd:PHA03307 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAP 901
|
170 180
....*....|....*....|....*
gi 2462559939 289 VSggfAGPGVAEDVRGRSPPERPVP 313
Cdd:PHA03307 902 AP---RPRPAPRVKLGPMPPGGPDP 923
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
345-568 |
1.17e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.98 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 345 SENDYLKDELDELRAEMEEMRDSYLE---------EDVYQLQELRRELDRANKNCRILQYRLRKAEQKSlkvaETGQVDG 415
Cdd:COG1340 57 EEAQELREKRDELNEKVKELKEERDElneklnelrEELDELRKELAELNKAGGSIDKLRKEIERLEWRQ----QTEVLSP 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 416 EL-------IRSLEQDLKVAKDvSVRLHHELKTVEEKRAKAEDENETLRQQMieveiskQALQNELERLKESSLKRRSTR 488
Cdd:COG1340 133 EEekelvekIKELEKELEKAKK-ALEKNEKLKELRAELKELRKEAEEIHKKI-------KELAEEAQELHEEMIELYKEA 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 489 -EMYKE----KKTFNqnggmerpgNCRPATKTQRKLAPRRKDDSADLRCQL--QFAKEEAFLMRKKMAKLGREKDELEQE 561
Cdd:COG1340 205 dELRKEadelHKEIV---------EAQEKADELHEEIIELQKELRELRKELkkLRKKQRALKREKEKEELEEKAEEIFEK 275
|
....*..
gi 2462559939 562 LQKYKSL 568
Cdd:COG1340 276 LKKGEKL 282
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
110-262 |
1.28e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.55 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 110 KPPPGAGaraaggakaalgsrrAARVAPAEPLSRAGKP-PGAEPPSAAAKGRKVKrgsRAPPARTVGPPTPAARI-PAVT 187
Cdd:PRK14951 365 KPAAAAE---------------AAAPAEKKTPARPEAAaPAAAPVAQAAAAPAPA---AAPAAAASAPAAPPAAApPAPV 426
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462559939 188 LAVTSVAGSPARcsriSHTDSSSDLSDCPSEPLSDEQRLLPAAssdAESGTGSSDREPPRGAPTPSPAARGAPPG 262
Cdd:PRK14951 427 AAPAAAAPAAAP----AAAPAAVALAPAPPAQAAPETVAIPVR---VAPEPAVASAAPAPAAAPAAARLTPTEEG 494
|
|
| Rootletin |
pfam15035 |
Ciliary rootlet component, centrosome cohesion; |
391-493 |
1.40e-03 |
|
Ciliary rootlet component, centrosome cohesion;
Pssm-ID: 464459 [Multi-domain] Cd Length: 190 Bit Score: 41.95 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 391 RILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDL-----KVAKDVSVRLHHELKTVEEKRAKAED---ENETLRQQMIE 462
Cdd:pfam15035 24 KVLQYKKRCSELEQQLLEKTSELEKTELLLRKLTLeprlqRLEREHSADLEEALIRLEEERQRSESlsqVNSLLREQLEQ 103
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2462559939 463 VEISKQALQNELERL-------------KESSLKRRstREMYKE 493
Cdd:pfam15035 104 ASRANEALREDLQKLtndwerareeleqKESEWRKE--EEAFNE 145
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
345-682 |
1.90e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 345 SENDYLKDELDEL-RAEME-EMRDSYLEEdvyQLQELRRELDRANKNCRILQYRLRKAEqkslkvAETGQVDGELIRSLE 422
Cdd:pfam01576 384 SENAELQAELRTLqQAKQDsEHKRKKLEG---QLQELQARLSESERQRAELAEKLSKLQ------SELESVSSLLNEAEG 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 423 QDLKVAKDVSvRLHHELKTV-----EEKRAK---------AEDENETLRQQMIEVEISKQALQNELERLKE--SSLKRR- 485
Cdd:pfam01576 455 KNIKLSKDVS-SLESQLQDTqellqEETRQKlnlstrlrqLEDERNSLQEQLEEEEEAKRNVERQLSTLQAqlSDMKKKl 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 486 ------------STREMYKEKKTFNQNGGmERPGNCRPATKTQRKLAPRRKDDSADLRCQLQFA-----KEEAF---LMR 545
Cdd:pfam01576 534 eedagtlealeeGKKRLQRELEALTQQLE-EKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVsnlekKQKKFdqmLAE 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 546 KKM--AKLGREKDELEQElqkykslygdvdsplptgeaggppsTREAELK-LRLKLVEEEANilgRKIVELEVENRGLKA 622
Cdd:pfam01576 613 EKAisARYAEERDRAEAE-------------------------AREKETRaLSLARALEEAL---EAKEELERTNKQLRA 664
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 623 EMEDMRGQQEREGpgrdhapsiptspfgdslESSTELRRHLQFVEEEAELLRRSISEIED 682
Cdd:pfam01576 665 EMEDLVSSKDDVG------------------KNVHELERSKRALEQQVEEMKTQLEELED 706
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
350-487 |
2.06e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKncrilqyRLRKAEQKSLKVAETgqvDGELIRSLEQDLKvak 429
Cdd:COG3206 268 LRAQLAELEAELAELSARYTPNHP-DVIALRAQIAALRA-------QLQQEAQRILASLEA---ELEALQAREASLQ--- 333
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462559939 430 dvsvrlhhelKTVEEKRAKAEDENETLRQQMI---EVEISKQALQNELERLKESSLKRRST 487
Cdd:COG3206 334 ----------AQLAQLEARLAELPELEAELRRlerEVEVARELYESLLQRLEEARLAEALT 384
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
348-739 |
2.20e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 348 DYLKDELDELRAEMEEMrdSYLEEDVY----QLQELRRELDRANKNCRILqyrLRKAEQKSlkvAETGQVDGELI--RSL 421
Cdd:PRK01156 169 DKLKDVIDMLRAEISNI--DYLEEKLKssnlELENIKKQIADDEKSHSIT---LKEIERLS---IEYNNAMDDYNnlKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 422 EQDLKVAKDVSVRLHHELKTVEEKRAKAEDENetlrqqmieVEISkqALQNELERLKESSL--KRRSTREMYKEKKTFNQ 499
Cdd:PRK01156 241 LNELSSLEDMKNRYESEIKTAESDLSMELEKN---------NYYK--ELEERHMKIINDPVykNRNYINDYFKYKNDIEN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 500 NGGMER--PGNCRPATKTQRKLAPRRKDDSadlrcqlQFAKeeaflMRKKMAKLGREKDELEQELQKYKSLYGDVDS--- 574
Cdd:PRK01156 310 KKQILSniDAEINKYHAIIKKLSVLQKDYN-------DYIK-----KKSRYDDLNNQILELEGYEMDYNSYLKSIESlkk 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 575 ------------PLPTGEAGGPPSTREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGpGRDHAP 642
Cdd:PRK01156 378 kieeyskniermSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQSVCP 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 643 SIPTSpFGDslESSTELRRH----LQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREpgwlgegASPGAGGGAP 718
Cdd:PRK01156 457 VCGTT-LGE--EKSNHIINHynekKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINK-------SINEYNKIES 526
|
410 420
....*....|....*....|.
gi 2462559939 719 LQEELKSARLQISELSGKVLK 739
Cdd:PRK01156 527 ARADLEDIKIKINELKDKHDK 547
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1155-1303 |
2.36e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 1155 KQVVENQQ-LFSAFKALLEDFRAELREDERARLRLQ---QQYASDKAAWDVEWAVLKCRLEQLEEKTENKLGELGSSAES 1230
Cdd:TIGR02168 788 EAQIEQLKeELKALREALDELRAELTLLNEEAANLRerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559939 1231 KGALKKEREVHQKLLADSHSLVMDLRwqihhseknwnrekvELLDRLDRDRQEWERQKKEFLWRIEQLQKENS 1303
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLR---------------SELEELSEELRELESKRSELRRELEELREKLA 925
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
31-156 |
2.62e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.78 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 31 PVAERRRLHRaPSPARPFLKDLHARPAAPGPAVPSSGrapapaaprspnlAGKAPPSPGSLAAPGRLSRRSGGVPGAKDK 110
Cdd:PRK14951 374 APAEKKTPAR-PEAAAPAAAPVAQAAAAPAPAAAPAA-------------AASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462559939 111 PPPGAGARAAGGAKAALGSRRA--ARVAPAEPLSRAGKPPGAEPPSAA 156
Cdd:PRK14951 440 AAPAAVALAPAPPAQAAPETVAipVRVAPEPAVASAAPAPAAAPAAAR 487
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
374-576 |
2.66e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 374 YQLQELRRELDRANKNCRILQYRLRKAEQKslkvaetgqvdgelIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDEN 453
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDE--------------LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 454 ETLRQQMIEVEISK--QALQNELERLKesslKRRSTREmyKEKKTFnqnggMERpgncrpATKTQRKLApRRKDDSADLR 531
Cdd:COG1579 76 KKYEEQLGNVRNNKeyEALQKEIESLK----RRISDLE--DEILEL-----MER------IEELEEELA-ELEAELAELE 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462559939 532 CQLQFAKEEAflmRKKMAKLGREKDELEQELQKYKSlygDVDSPL 576
Cdd:COG1579 138 AELEEKKAEL---DEELAELEAELEELEAEREELAA---KIPPEL 176
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
525-753 |
3.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 525 DDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYkslygdvdsplptgeaggppSTREAELKLRLKLVEEEAN 604
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL--------------------ERRIAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 605 ILGRKIVELEVENRGLKAEMEDMRGQQER-----EGPGRDHAPSIPTSP--FGDSLESSTELRRHLQFVEEEAELLRRSI 677
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAEllralYRLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559939 678 SEIEDHNRQLTHELSKfkfepprepgwLGEGASPGAGGGAPLQEELKSARLQISELSGKVLKLQHENHALLSNIQR 753
Cdd:COG4942 160 AELAALRAELEAERAE-----------LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
40-331 |
3.69e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 40 RAPSPARPflkdlHARPAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARA 119
Cdd:PRK07764 392 GAPAAAAP-----SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 120 AGGAKAALGSRRAARVAPAEPLSRAGKPPGAEPPSAAAKGR--------------KVKRGSRAPPARTVGPPTPAA-RIP 184
Cdd:PRK07764 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADdaatlrerwpeilaAVPKRSRKTWAILLPEATVLGvRGD 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 185 AVTLAVTSvAGSPARCSRISHTDSSSDL------SDC-------PSEPLSDEQRllPAASSDAESGTGSSDREPPRGAPT 251
Cdd:PRK07764 547 TLVLGFST-GGLARRFASPGNAEVLVTAlaeelgGDWqveavvgPAPGAAGGEG--PPAPASSGPPEEAARPAAPAAPAA 623
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 252 PSPAARGAPPGSPEPPALLAAPLA--AGACPGGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVP 329
Cdd:PRK07764 624 PAAPAPAGAAAAPAEASAAPAPGVaaPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP 703
|
..
gi 2462559939 330 AA 331
Cdd:PRK07764 704 AP 705
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
350-634 |
4.01e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.43 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSyLEEDVYQLQELRRELDraNKNCRILQYRLRKAEQKSLKvaetgqvdGELIRSLeQDLKVAK 429
Cdd:COG1340 13 LEEKIEELREEIEELKEK-RDELNEELKELAEKRD--ELNAQVKELREEAQELREKR--------DELNEKV-KELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 430 DvsvrlhhELKT-VEEKRAKAEDENEtLRQQMIEVEISKQALQNELERLKESSLKRRSTREmyKEKKTFNQnggmerpgn 508
Cdd:COG1340 81 D-------ELNEkLNELREELDELRK-ELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPE--EEKELVEK--------- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 509 crpATKTQRKLapRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYK----SLYGDVDSplptgeaggp 584
Cdd:COG1340 142 ---IKELEKEL--EKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHeemiELYKEADE---------- 206
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462559939 585 pSTREA--------ELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQERE 634
Cdd:COG1340 207 -LRKEAdelhkeivEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKE 263
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
347-625 |
4.16e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 347 NDYLKDELDELRAEMEEMRDSY--LEEDVYQ----LQELRRELDRAN---KNCRILQYRLrKAEQKSLKVAETGQVD--- 414
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQaaAEEQLVQangeLEKASREETFARtalKNARLDLRRL-FDEKQSEKDKKNKALAerk 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 415 ---GELIRSLEQDLKVakdvsvrLHHELKTVEEKRAKAEDENETLRQQMIEVEISkqALQNELERLKESSLKRRSTREMY 491
Cdd:pfam12128 678 dsaNERLNSLEAQLKQ-------LDKKHQAWLEEQKEQKREARTEKQAYWQVVEG--ALDAQLALLKAAIAARRSGAKAE 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 492 -KEKKTFNQNG----GMERPGNCRPATKTQ---RKLAPRRKDDSADLRCQlQFAKEEAFLMRKKMA----KLGREKDELE 559
Cdd:pfam12128 749 lKALETWYKRDlaslGVDPDVIAKLKREIRtleRKIERIAVRRQEVLRYF-DWYQETWLQRRPRLAtqlsNIERAISELQ 827
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559939 560 QELQKykslygdvdsplptgeaggppstREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEME 625
Cdd:pfam12128 828 QQLAR-----------------------LIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMS 870
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
416-695 |
5.71e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 416 ELIRSLEQDLKVAKDVSVRLhhelKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKE-----SSLKRRsTREM 490
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELI----KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeeiEELEKE-LESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 491 YKEKKTFNqnggmERPGNCRPATKTQRKLAPRRKDDSADLRcQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYG 570
Cdd:PRK03918 251 EGSKRKLE-----EKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 571 DVDSPLPTGEAggpPSTREAELKLRLKLVEEEANILGRKIVELEVenrgLKAEMEDMRGQQEREGPgrdhapsiptspfg 650
Cdd:PRK03918 325 GIEERIKELEE---KEERLEELKKKLKELEKRLEELEERHELYEE----AKAKKEELERLKKRLTG-------------- 383
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462559939 651 dslESSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFK 695
Cdd:PRK03918 384 ---LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK 425
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
346-741 |
6.06e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 6.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 346 ENDYLKDELDELRAEMEEmrdsyLEEDVYQLQELRRELDRANKNCRIL--QYRLRKAEQKSLKVAETGQV---------- 413
Cdd:TIGR00618 254 EQLKKQQLLKQLRARIEE-----LRAQEAVLEETQERINRARKAAPLAahIKAVTQIEQQAQRIHTELQSkmrsrakllm 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 414 ----------DGELIRSLEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQ------NELERL 477
Cdd:TIGR00618 329 kraahvkqqsSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQslckelDILQRE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 478 KESSLKRRSTREMYKEKKTfnqnggmerpgncrpATKTQRKLAPRRKDD-SADLRCQLQFAKEEAFLMRKKMAKLgREKD 556
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLA---------------HAKKQQELQQRYAELcAAAITCTAQCEKLEKIHLQESAQSL-KERE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 557 ELEQELQKYKSLY---GDVDSPLPTGEAGGPPSTREAELKLRLKLVE-EEANILGRKIVELEVENRGLKAEMEDMRGQ-- 630
Cdd:TIGR00618 473 QQLQTKEQIHLQEtrkKAVVLARLLELQEEPCPLCGSCIHPNPARQDiDNPGPLTRRMQRGEQTYAQLETSEEDVYHQlt 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 631 QEREGPGR--------DHAPSIPTSPFGDSLESSTELRRHLQFV----EEEAELLRRSISEIEDHNRQLTHELSkfKFEP 698
Cdd:TIGR00618 553 SERKQRASlkeqmqeiQQSFSILTQCDNRSKEDIPNLQNITVRLqdltEKLSEAEDMLACEQHALLRKLQPEQD--LQDV 630
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 2462559939 699 PREPGWLGEGASPGAGGGAPLQEELKSARLQISELSGKVLKLQ 741
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE 673
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
7-311 |
6.11e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 7 PAGGGAPD------AKLQPPGQHHRHHHLHPVAERRRLHRAPsparpflkdLHARPAAPGPAVPSSGRAPAPAAPRSPNL 80
Cdd:PHA03247 206 PSGPGPAApadltaAALHLYGASETYLQDEPFVERRVVISHP---------LRGDIAAPAPPPVVGEGADRAPETARGAT 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 81 AGKAPPSPGSLAAPGRLSRRS-----GGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEPLSRAGKP-------- 147
Cdd:PHA03247 277 GPPPPPEAAAPNGAAAPPDGVwgaalAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPlgfpkrrr 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 148 PGAEPPSAA---AKGRKVKRgsRAPPARTVGPPTPAARIPavtlavtsVAGSPArcsrishtdssSDLSDCPSEPlsdeq 224
Cdd:PHA03247 357 PTWTPPSSLedlSAGRHHPK--RASLPTRKRRSARHAATP--------FARGPG-----------GDDQTRPAAP----- 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 225 rlLPAASSDAESGTGSSDREPPRGAPTPSP-AARGAPPGSPeppallaaplAAGACPGGRSIPSGVSGGFAGPGVAEDVR 303
Cdd:PHA03247 411 --VPASVPTPAPTPVPASAPPPPATPLPSAePGSDDGPAPP----------PERQPPAPATEPAPDDPDDATRKALDALR 478
|
....*...
gi 2462559939 304 GRSPPERP 311
Cdd:PHA03247 479 ERRPPEPP 486
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
36-184 |
6.65e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.59 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 36 RRLHRAPSPARPflkdlhaRPAAPGPAVPSSGRAPAPAAPrspnlAGKAPPSPGSLAAPGRLsRRSGGVPGAKdkPPPGA 115
Cdd:PHA03378 685 LPIQWAPGTMQP-------PPRAPTPMRPPAAPPGRAQRP-----AAATGRARPPAAAPGRA-RPPAAAPGRA--RPPAA 749
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462559939 116 GARAAGGAKAALGSRRAARVAPaeplsraGKPPGAEPPSAAAKGRKVKRGSRAPPARTVGPPTPAARIP 184
Cdd:PHA03378 750 APGRARPPAAAPGRARPPAAAP-------GAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMP 811
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
56-329 |
7.98e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.10 E-value: 7.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 56 PAAPGPAVPSSGRAPAPAAPRSPNLAGKAPPSPGSLAAPGRLSRRS---------GGVP---GAKDKPPPGAGARAAGGA 123
Cdd:pfam17823 115 LAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAaiaaasaphAASPaprTAASSTTAASSTTAASSA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 124 KAALGSRRAARVAPAEPLSRAGKPPGAepPSAAAKGRKVkrGSRAPPART----VGPPTPA--ARIPAVTLAVTSVAGSP 197
Cdd:pfam17823 195 PTTAASSAPATLTPARGISTAATATGH--PAAGTALAAV--GNSSPAAGTvtaaVGTVTPAalATLAAAAGTVASAAGTI 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 198 ARCSRISHTDSSSdlSDCPSEPLSDEqrllPAASSDAES-GTGS--SDREP---PRGAPTPSPAARGAPPGSPEPPALLA 271
Cdd:pfam17823 271 NMGDPHARRLSPA--KHMPSDTMARN----PAAPMGAQAqGPIIqvSTDQPvhnTAGEPTPSPSNTTLEPNTPKSVASTN 344
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462559939 272 APLAAGACPGGRSiPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVP 329
Cdd:pfam17823 345 LAVVTTTKAQAKE-PSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLAP 401
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
350-495 |
8.08e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 350 LKDELDELRAEMEEMRDSYLEEDVyQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQdLKVAK 429
Cdd:COG3883 35 AQAELDALQAELEELNEEYNELQA-ELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDV-LLGSE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 430 DVS-------------------VRLHHELK-TVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTRE 489
Cdd:COG3883 113 SFSdfldrlsalskiadadadlLEELKADKaELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEA 192
|
....*.
gi 2462559939 490 MYKEKK 495
Cdd:COG3883 193 AAEAQL 198
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
351-563 |
9.16e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 351 KDELDELRAEMEEMRDSY------LEEDVYQLQELRRELDRANKNCRILQYRLRKAEqKSLKVAETGQVDGElIRSLEQD 424
Cdd:PRK02224 383 REEIEELEEEIEELRERFgdapvdLGNAEDFLEELREERDELREREAELEATLRTAR-ERVEEAEALLEAGK-CPECGQP 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559939 425 LKVAKDVSVrlhheLKTVEEKRAKAEDENETLRQQMIEVE------ISKQALQNELERLKEsslKRRSTREMYKEKKTfn 498
Cdd:PRK02224 461 VEGSPHVET-----IEEDRERVEELEAELEDLEEEVEEVEerleraEDLVEAEDRIERLEE---RREDLEELIAERRE-- 530
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462559939 499 qngGMERPgncRPATKTQRKLAPRRKDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQ 563
Cdd:PRK02224 531 ---TIEEK---RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
|
| |
