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Conserved domains on  [gi|2462563286|ref|XP_054175953|]
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proline and serine-rich protein 3 isoform X11 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 244-615 1.37e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 1.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  244 PDSSKGLGPRAPASPAPAQAQTPTPAPAPASSQA---------PLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPA 314
Cdd:PHA03247  2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPdphppptvpPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR 2684

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  315 LRTLtsPAPVETLSSLGTQPnhvplwssvAQPGPPEAfyverPPFPSVSSphifwAPSSHGFFWAPQSGPWVSLGAVPPT 394
Cdd:PHA03247  2685 RRAA--RPTVGSLTSLADPP---------PPPPTPEP-----APHALVSA-----TPLPPGPAAARQASPALPAAPAPPA 2743

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  395 QQASTLAHLGStlAPPASLASTLEPPASTPaPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSscaqPKS 474
Cdd:PHA03247  2744 VPAGPATPGGP--ARPARPPTTAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA----PAA 2816

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  475 LGPKSRRSRAPRPEAAEQVPAAGQGPGPQlrgvlgqvvaarlFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPP 554
Cdd:PHA03247  2817 ALPPAASPAGPLPPPTSAQPTAPPPPPGP-------------PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462563286  555 SESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 615
Cdd:PHA03247  2884 RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 244-615 1.37e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 1.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  244 PDSSKGLGPRAPASPAPAQAQTPTPAPAPASSQA---------PLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPA 314
Cdd:PHA03247  2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPdphppptvpPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR 2684

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  315 LRTLtsPAPVETLSSLGTQPnhvplwssvAQPGPPEAfyverPPFPSVSSphifwAPSSHGFFWAPQSGPWVSLGAVPPT 394
Cdd:PHA03247  2685 RRAA--RPTVGSLTSLADPP---------PPPPTPEP-----APHALVSA-----TPLPPGPAAARQASPALPAAPAPPA 2743

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  395 QQASTLAHLGStlAPPASLASTLEPPASTPaPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSscaqPKS 474
Cdd:PHA03247  2744 VPAGPATPGGP--ARPARPPTTAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA----PAA 2816

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  475 LGPKSRRSRAPRPEAAEQVPAAGQGPGPQlrgvlgqvvaarlFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPP 554
Cdd:PHA03247  2817 ALPPAASPAGPLPPPTSAQPTAPPPPPGP-------------PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462563286  555 SESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 615
Cdd:PHA03247  2884 RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 266-414 8.73e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 39.63  E-value: 8.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 266 PTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPALRtltspAPVETLsslgTQPNHVPLWSSVAQ 345
Cdd:pfam09770 210 PAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQG-----HPVTIL----QRPQSPQPDPAQPS 280

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462563286 346 PGPPEAFYVERPPFPSVSSPHIFWAPSSHGFFWAPQSGPWVSLGAVPPTQQA----STLAHLGSTLAPPASLA 414
Cdd:pfam09770 281 IQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAhrqqGSFGRQAPIITHPQQLA 353
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 244-615 1.37e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 1.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  244 PDSSKGLGPRAPASPAPAQAQTPTPAPAPASSQA---------PLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPA 314
Cdd:PHA03247  2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPdphppptvpPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR 2684

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  315 LRTLtsPAPVETLSSLGTQPnhvplwssvAQPGPPEAfyverPPFPSVSSphifwAPSSHGFFWAPQSGPWVSLGAVPPT 394
Cdd:PHA03247  2685 RRAA--RPTVGSLTSLADPP---------PPPPTPEP-----APHALVSA-----TPLPPGPAAARQASPALPAAPAPPA 2743

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  395 QQASTLAHLGStlAPPASLASTLEPPASTPaPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSscaqPKS 474
Cdd:PHA03247  2744 VPAGPATPGGP--ARPARPPTTAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA----PAA 2816

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  475 LGPKSRRSRAPRPEAAEQVPAAGQGPGPQlrgvlgqvvaarlFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPP 554
Cdd:PHA03247  2817 ALPPAASPAGPLPPPTSAQPTAPPPPPGP-------------PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462563286  555 SESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 615
Cdd:PHA03247  2884 RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 392-511 1.10e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 1.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 392 PPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLAC-TPAPPASTLASPAVPQGLPI------- 463
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAPaaapaav 445

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462563286 464 ---PDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQV 511
Cdd:PRK14951  446 alaPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PHA03247 PHA03247
large tegument protein UL36; Provisional
 266-676 1.72e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 1.72e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  266 PTPAPAPASSQAPLRPeddilyqwRQRRKLEQAQGSKGDRAWVPPLTPALRTLTSPAPVETLSSLGTQPNHVPLWSSVAQ 345
Cdd:PHA03247  2569 PPPRPAPRPSEPAVTS--------RARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  346 PGPPEAFYVERPPF----PSVSSPHIFWAPSSHGFFWAPQSGpWVSLGAVPPTQQASTLAHLGSTLAPPASLASTLEPPA 421
Cdd:PHA03247  2641 HPPPTVPPPERPRDdpapGRVSRPRRARRLGRAAQASSPPQR-PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT 2719

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  422 STP-APLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGP 500
Cdd:PHA03247  2720 PLPpGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLP 2799

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  501 GPQlrgVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSpkVQATQPQTKVTPPPSESQC-----------RAKAESLKAK 569
Cdd:PHA03247  2800 SPW---DPADPPAAVLAPAAALPPAASPAGPLPPPTSA--QPTAPPPPPGPPPPSLPLGgsvapggdvrrRPPSRSPAAK 2874

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  570 ALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQVGSPEALAPPPPAADHAPSEALLAQAALLLQAAE 649
Cdd:PHA03247  2875 PAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE 2954

                          410       420
                   ....*....|....*....|....*..
gi 2462563286  650 DSDGSEfqdDPVLQVLRAHRAELSRQK 676
Cdd:PHA03247  2955 PSGAVP---QPWLGALVPGRVAVPRFR 2978
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
389-601 2.87e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 2.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 389 GAVPPTQQASTLAhlgsTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSS 468
Cdd:PRK12323  371 GAGPATAAAAPVA----QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 469 CAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPKVQAtqpQT 548
Cdd:PRK12323  447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW---VA 523

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2462563286 549 KVTPPPSESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPA 601
Cdd:PRK12323  524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PHA03247 PHA03247
large tegument protein UL36; Provisional
 232-612 4.10e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 4.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  232 SDGLSPFSETFIPDSSKGLGPRAPASPAPAQaqtptPAPAPASSQAPLRPEDDILYQWrqRRKLEQ-AQGSKGDRAwvPP 310
Cdd:PHA03247  2484 AEARFPFAAGAAPDPGGGGPPDPDAPPAPSR-----LAPAILPDEPVGEPVHPRMLTW--IRGLEElASDDAGDPP--PP 2554

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  311 LTPALRTLTSPAPVETlSSLGTQPNHVPLWSSVAQPGPPEAFYVERPPFPSVSSPHIFWAPSShgffwAPQSGPWVSLGA 390
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPP-PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSP-----LPPDTHAPDPPP 2628

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  391 VPPTQQASTLAHLGSTLAPPASLASTLEPP--------ASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLP 462
Cdd:PHA03247  2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  463 IPDP--SSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPgpqlrgvlgqvvaarLFPDSLEDTPPHFEGPPPPKAGSPK 540
Cdd:PHA03247  2709 EPAPhaLVSATPLPPGPAAARQASPALPAAPAPPAVPAGP---------------ATPGGPARPARPPTTAGPPAPAPPA 2773

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462563286  541 VQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPP 612
Cdd:PHA03247  2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 379-514 4.43e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.63  E-value: 4.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 379 APQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTlAPPASTPAPLACTPAPPAstlasPAVP 458
Cdd:PRK14951  384 PEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPA-AAPAAAPAAVALAPAPPA-----QAAP 457

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462563286 459 QGLPIPDPsscAQPKSLGPKSRRSRAPRPEAAEQVPAAgqgPGPQLRGVLGQVVAA 514
Cdd:PRK14951  458 ETVAIPVR---VAPEPAVASAAPAPAAAPAAARLTPTE---EGDVWHATVQQLAAA 507
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 418-512 5.59e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.81  E-value: 5.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  418 EPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSlgpksrrSRAPRPEAAEQVPAAG 497
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP-------AAPPAAAAAAAPAAAA 112

                           90
                   ....*....|....*.
gi 2462563286  498 QGPGPQ-LRGVLGQVV 512
Cdd:PRK12270   113 VEDEVTpLRGAAAAVA 128
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
388-493 1.80e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.77  E-value: 1.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 388 LGAVPPTQQASTLAHLGStlapPASLASTLEPPASTPAPLASTLAPPASTPAPLAcTPAPPASTLASPAVPQGLPIPDPS 467
Cdd:PRK14971  384 TQPAAAPQPSAAAAASPS----PSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA-VPVNPPSTAPQAVRPAQFKEEKKI 458

                          90       100
                  ....*....|....*....|....*.
gi 2462563286 468 SCAQPKSLGPKSRRsraPRPEAAEQV 493
Cdd:PRK14971  459 PVSKVSSLGPSTLR---PIQEKAEQA 481
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
343-515 2.05e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 343 VAQPGPPEAFYVERPPFPSVSSPHIFWAPSSHGFFWAPQSGPwvslGAVPPTQQASTLAHLGSTLAPPASLASTLEPPAs 422
Cdd:PRK12323  382 VAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAP----ARRSPAPEALAAARQASARGPGGAPAPAPAPAA- 456

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 423 TPAPLASTLAPPASTPAPLACTPAPPASTLASPA-----------VPQGLPIPDP----SSCAQPKSLGPKSRRSRAPRP 487
Cdd:PRK12323  457 APAAAARPAAAGPRPVAAAAAAAPARAAPAAAPApadddpppweeLPPEFASPAPaqpdAAPAGWVAESIPDPATADPDD 536

                         170       180
                  ....*....|....*....|....*...
gi 2462563286 488 EAAEQVPAAGQGPGPQLRGVLGQVVAAR 515
Cdd:PRK12323  537 AFETLAPAPAAAPAPRAAAATEPVVAPR 564
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
370-503 5.29e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 5.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 370 APSSHGFFWAPQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLA-----STLEPPASTPAPLASTLAPPASTPAPLACT 444
Cdd:PRK07003  387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAppataDRGDDAADGDAPVPAKANARASADSRCDER 466

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2462563286 445 PAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQ 503
Cdd:PRK07003  467 DAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 379-514 5.61e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 5.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 379 APQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLAstlePPASTPAPLASTLAPPASTPAPlacTPAPPASTLASPAVP 458
Cdd:PRK07764  380 RLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAA----APAAAAAPAPAAAPQPAPAPAP---APAPPSPAGNAPAGG 452

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 459 QGLPIPDPSSCAQPK---------SLGPKSRRSRAPRPEAAEQVPAA-----GQGPGPQLRGVLGQVVAA 514
Cdd:PRK07764  453 APSPPPAAAPSAQPApapaaapepTAAPAPAPPAAPAPAAAPAAPAApaapaGADDAATLRERWPEILAA 522
PRK11855 PRK11855
dihydrolipoamide acetyltransferase; Reviewed
 404-504 1.80e-03

dihydrolipoamide acetyltransferase; Reviewed


Pssm-ID: 237000 [Multi-domain]  Cd Length: 547  Bit Score: 41.35  E-value: 1.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 404 GSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQ-----GLPIpdpsscAQPKSLGPK 478
Cdd:PRK11855  196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRlarelGVDL------SQVKGTGKK 269

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2462563286 479 SR----------RSRAPRPEAAEQVPAAGQGPGPQL 504
Cdd:PRK11855  270 GRitkedvqafvKGAMSAAAAAAAAAAAAGGGGLGL 305
PHA03247 PHA03247
large tegument protein UL36; Provisional
 237-514 2.21e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 2.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  237 PFSETFIPDSSKGLGPRAPASPAPAQAQTPTPAPAPASSQAPLRPeddilyqwRQRRKLEQAQGSKGDRAWVPPLTPALR 316
Cdd:PHA03247  2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP--------ARPARPPTTAGPPAPAPPAAPAAGPPR 2781

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  317 TLTSPAPVETLSSLGTQPN-HVPLWSSVAQPGPPEAFYVERPPFPSVSSPHIFwAPSSHGFFWAPQSGPWVSLGAVPPtq 395
Cdd:PHA03247  2782 RLTRPAVASLSESRESLPSpWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA-QPTAPPPPPGPPPPSLPLGGSVAP-- 2858

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  396 qASTLAHLGSTLAPPASLASTLEPPAS---------TPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDP 466
Cdd:PHA03247  2859 -GGDVRRRPPSRSPAAKPAAPARPPVRrlarpavsrSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 2462563286  467 SSCAQPkslgpksrrsrAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAA 514
Cdd:PHA03247  2938 RPQPPL-----------APTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
420-613 3.57e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 3.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 420 PASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQG 499
Cdd:PRK07003  360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 500 PGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSvi 579
Cdd:PRK07003  440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS-- 517

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2462563286 580 RKSEATPspgaclqPEVPLSPAEQATTVKASPPA 613
Cdd:PRK07003  518 REDAPAA-------AAPPAPEARPPTPAAAAPAA 544
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 265-604 3.64e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 3.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 265 TPTPAPAPASSQAPLRPEDDILYQWRQrrklEQAQGSKGDRAWVPPLTPALRTLTSPAPVETLSSLGTQPNHVPLwSSVA 344
Cdd:PRK07764  428 APQPAPAPAPAPAPPSPAGNAPAGGAP----SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA-APAA 502

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 345 QPGPPEAFYVERppfpsvSSPHIFWAPSSHGFFWAPQSGPWVSLGAVppTQQASTLAHLGSTLA---------------- 408
Cdd:PRK07764  503 PAGADDAATLRE------RWPEILAAVPKRSRKTWAILLPEATVLGV--RGDTLVLGFSTGGLArrfaspgnaevlvtal 574

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 409 ---------------PPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPK 473
Cdd:PRK07764  575 aeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHP 654

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 474 SLGPKSRRSRAPRPEAAEQVPAAGQGPGPqlRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPP 553
Cdd:PRK07764  655 KHVAVPDASDGGDGWPAKAGGAAPAAPPP--APAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPS 732

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462563286 554 PSESQCRAKAEslkAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQA 604
Cdd:PRK07764  733 PAADDPVPLPP---EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
266-463 4.66e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 4.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 266 PTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKGDRAwvPPLTPALRTLTSPAPVETLSSLGTQPnhvplwSSVAQ 345
Cdd:PRK12323  413 AAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA--PAAAPAAAARPAAAGPRPVAAAAAAA------PARAA 484

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 346 PGPPEAFYVERPPfPSVSSPHIFWAPSSHGFfwAPQSGPWVSLGAVPPTQQASTLAHLGSTLAPPAslastleppASTPA 425
Cdd:PRK12323  485 PAAAPAPADDDPP-PWEELPPEFASPAPAQP--DAAPAGWVAESIPDPATADPDDAFETLAPAPAA---------APAPR 552

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2462563286 426 PLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPI 463
Cdd:PRK12323  553 AAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLPV 590
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 406-503 5.54e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.18  E-value: 5.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 406 TLAPPASLASTLEPPASTPAPLASTLAPpASTPAPLACTPAPPASTLASPAVPQGLPI-PDPSSCAQPKSLGPKSRRSRA 484
Cdd:PRK14950  358 ALLVPVPAPQPAKPTAAAPSPVRPTPAP-STRPKAAAAANIPPKEPVRETATPPPVPPrPVAPPVPHTPESAPKLTRAAI 436

                          90
                  ....*....|....*....
gi 2462563286 485 PRPEAAEqvpaaGQGPGPQ 503
Cdd:PRK14950  437 PVDEKPK-----YTPPAPP 450
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
384-616 8.18e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 8.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 384 PWVSLGAVPPTQQASTLAhlGSTLAPPASLASTLEPPASTPAPLAStlAPPASTPAPLACTPAPPASTLASPAVPQGLPI 463
Cdd:PRK07003  360 PAVTGGGAPGGGVPARVA--GAVPAPGARAAAAVGASAVPAVTAVT--GAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 464 PDP--SSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPkv 541
Cdd:PRK07003  436 ADRgdDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP-- 513

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 542 qATQPQTKVTPPPSESQCRAKAESLKAKALPPAAG------SVIRK------SEATPSPGACLQPEVPLSPAEQATtvkA 609
Cdd:PRK07003  514 -AAASREDAPAAAAPPAPEARPPTPAAAAPAARAGgaaaalDVLRNagmrvsSDRGARAAAAAKPAAAPAAAPKPA---A 589


                  ....*..
gi 2462563286 610 SPPAFQV 616
Cdd:PRK07003  590 PRVAVQV 596
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 404-497 8.35e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 39.34  E-value: 8.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 404 GSTLAPPASLASTLE--------------PPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSC 469
Cdd:PRK14965  358 MATLAPGAPVSELLDrlealergapappsAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS 437

                          90       100
                  ....*....|....*....|....*...
gi 2462563286 470 AQPKSLGPKSRRSRAPRPEAAEQVPAAG 497
Cdd:PRK14965  438 ADPAAAASAGDRWRAFVAFVKGKKPALG 465
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 266-414 8.73e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 39.63  E-value: 8.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 266 PTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPALRtltspAPVETLsslgTQPNHVPLWSSVAQ 345
Cdd:pfam09770 210 PAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQG-----HPVTIL----QRPQSPQPDPAQPS 280

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462563286 346 PGPPEAFYVERPPFPSVSSPHIFWAPSSHGFFWAPQSGPWVSLGAVPPTQQA----STLAHLGSTLAPPASLA 414
Cdd:pfam09770 281 IQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAhrqqGSFGRQAPIITHPQQLA 353
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 409-555 8.81e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.46  E-value: 8.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 409 PPASLASTLEPPAST-PAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKS-LGPKSRRSRAPR 486
Cdd:PRK07994  361 PAAPLPEPEVPPQSAaPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQqLQRAQGATKAKK 440

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462563286 487 PEAAEQVPAAgqgpgpQLRGVLGQVVAARLFPDSLEDtPPHFEGPPPPKAGSPKVQATQPQTKVTPPPS 555
Cdd:PRK07994  441 SEPAAASRAR------PVNSALERLASVRPAPSALEK-APAKKEAYRWKATNPVEVKKEPVATPKALKK 502
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 371-465 9.35e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.49  E-value: 9.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286  371 PSSHGFFWAPQSGPwvslgaVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPAS 450
Cdd:PRK12270    27 PSWREFFADYGPGS------TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

                           90
                   ....*....|....*
gi 2462563286  451 TLASPAVPQGLPIPD 465
Cdd:PRK12270   101 AAAAAAAPAAAAVED 115
PHA03378 PHA03378
EBNA-3B; Provisional
 384-522 9.63e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.28  E-value: 9.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462563286 384 PWVSLGAVPPTQQASTLAHlgstlaPPASLASTLEPPASTP---APLASTLAPPA------STPAPLACTPAPPASTLAS 454
Cdd:PHA03378  737 PAAAPGRARPPAAAPGRAR------PPAAAPGRARPPAAAPgapTPQPPPQAPPApqqrprGAPTPQPPPQAGPTSMQLM 810

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462563286 455 PAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAARLFPDSLE 522
Cdd:PHA03378  811 PRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQ 878
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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