NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2462566144|ref|XP_054177353|]
View 

shiftless antiviral inhibitor of ribosomal frameshifting protein isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
UPF0515 super family cl21003
Uncharacterized protein UPF0515; This family of proteins is functionally uncharacterized. This ...
 16-78 1.02e-12

Uncharacterized protein UPF0515; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. There are two conserved sequence motifs: PLT and HSC.


The actual alignment was detected with superfamily member pfam15135:

Pssm-ID: 464521  Cd Length: 271  Bit Score: 65.60  E-value: 1.02e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462566144  16 REKFHGKVSSKKAGALMRKFGSDHTGVGRSIVY------GVKQKDGQELSNDLDAQTKKLRPKSLASKQ 78
Cdd:pfam15135   1 REKFHGKVSIEKAGVLMRRYGNNHDLVAMWIILckdaafDLDEEDQGALVNDPVARNVINKLKAEEQNG 69
 
Name Accession Description Interval E-value
UPF0515 pfam15135
Uncharacterized protein UPF0515; This family of proteins is functionally uncharacterized. This ...
 16-78 1.02e-12

Uncharacterized protein UPF0515; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. There are two conserved sequence motifs: PLT and HSC.


Pssm-ID: 464521  Cd Length: 271  Bit Score: 65.60  E-value: 1.02e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462566144  16 REKFHGKVSSKKAGALMRKFGSDHTGVGRSIVY------GVKQKDGQELSNDLDAQTKKLRPKSLASKQ 78
Cdd:pfam15135   1 REKFHGKVSIEKAGVLMRRYGNNHDLVAMWIILckdaafDLDEEDQGALVNDPVARNVINKLKAEEQNG 69
 
Name Accession Description Interval E-value
UPF0515 pfam15135
Uncharacterized protein UPF0515; This family of proteins is functionally uncharacterized. This ...
 16-78 1.02e-12

Uncharacterized protein UPF0515; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. There are two conserved sequence motifs: PLT and HSC.


Pssm-ID: 464521  Cd Length: 271  Bit Score: 65.60  E-value: 1.02e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462566144  16 REKFHGKVSSKKAGALMRKFGSDHTGVGRSIVY------GVKQKDGQELSNDLDAQTKKLRPKSLASKQ 78
Cdd:pfam15135   1 REKFHGKVSIEKAGVLMRRYGNNHDLVAMWIILckdaafDLDEEDQGALVNDPVARNVINKLKAEEQNG 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH