|
Name |
Accession |
Description |
Interval |
E-value |
| MEF2_binding |
pfam09047 |
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ... |
2082-2116 |
9.26e-16 |
|
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.
Pssm-ID: 370261 [Multi-domain] Cd Length: 35 Bit Score: 72.58 E-value: 9.26e-16
10 20 30
....*....|....*....|....*....|....*
gi 2462584298 2082 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2116
Cdd:pfam09047 1 TLLSPKGSISEETKQKLKNAILSAQSAANVKKDSL 35
|
|
| MEF2_binding |
cd13839 |
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; ... |
2082-2116 |
5.48e-14 |
|
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; The myocyte enhancer factor-2 (MEF2) binding domain, as found in the calcineurin-binding protein cabin-1, adopts an amphipathic alpha-helical structure, which allows it to bind to a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription. Cabin-1 inhibits calcineurin-mediated signal transduction in T-cell receptor-mediated signalling pathways, by binding to the activated form of calcineurin. Cabin-1 acts as a co-repressor of MEF2, the mycocyte enhancer factor-2, which regulates transcription in a calcium-dependent manner and plays vital roles in T-cell development and function.
Pssm-ID: 260103 [Multi-domain] Cd Length: 35 Bit Score: 67.41 E-value: 5.48e-14
10 20 30
....*....|....*....|....*....|....*
gi 2462584298 2082 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2116
Cdd:cd13839 1 TLLSPKGSISEETKQKLKNAILSSQSAANVKKDTL 35
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1868-2120 |
1.65e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.80 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1868 GAAAQRQASGDTPTTPKHPKDSRENFfpvtVVPTAPDPVPADSvQRPSDAHTKPRPAlaaATTIITCPPSASASTLDQSK 1947
Cdd:PHA03247 2583 TSRARRPDAPPQSARPRAPVDDRGDP----RGPAPPSPLPPDT-HAPDPPPPSPSPA---ANEPDPHPPPTVPPPERPRD 2654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1948 DPGPPRPHRP-----EATPSMASLGPEG-------EELARVAEGTSFPPQEPRHSPQvkmAPTSSPAEPhcWPAEAALGT 2015
Cdd:PHA03247 2655 DPAPGRVSRPrrarrLGRAAQASSPPQRprrraarPTVGSLTSLADPPPPPPTPEPA---PHALVSATP--LPPGPAAAR 2729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2016 GAEPTCSQAASSKAPSSGSAQPpeghpgkPEPSRAKSRPLPNMPklviPSAAtkfPPEITVTPPTPTLLSPKGSISEETK 2095
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATP-------GGPARPARPPTTAGP----PAPA---PPAAPAAGPPRRLTRPAVASLSESR 2795
|
250 260
....*....|....*....|....*
gi 2462584298 2096 QKLKSAILSAQSAANVRKESLCQPA 2120
Cdd:PHA03247 2796 ESLPSPWDPADPPAAVLAPAAALPP 2820
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1876-2109 |
4.22e-08 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 58.77 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1876 SGDTPTTPK-HPKDS-RENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGP-- 1951
Cdd:pfam05109 483 SGASPVTPSpSPRDNgTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPav 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1952 --PRPH------------------RPEAT-PSMASLGPEGEELARVAEGTSFPP---QEPRH----------------SP 1991
Cdd:pfam05109 563 ttPTPNatiptlgktsptsavttpTPNATsPTVGETSPQANTTNHTLGGTSSTPvvtSPPKNatsavttgqhnitsssTS 642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1992 QVKMAPTS-----SPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMpklviPSA 2066
Cdd:pfam05109 643 SMSLRPSSisetlSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGN-----SST 717
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2462584298 2067 ATKfPPEITVTPPTPtllsPKGSISEETKQKLKSAILSAQSAA 2109
Cdd:pfam05109 718 STK-PGEVNVTKGTP----PKNATSPQAPSGQKTAVPTVTSTG 755
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1880-2086 |
4.67e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.80 E-value: 4.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1880 PTTPKHPKDSRENFFPVTVVPTAPDPVPADS-VQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHRPE 1958
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGrVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1959 ATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSsgSAQPP 2038
Cdd:PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR--RLTRP 2786
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462584298 2039 EGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSP 2086
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1900-2082 |
1.80e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.87 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1900 PTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPP-SASAST-LDQSKD--------PGPPRPHRPEATPSMASlgPE 1969
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPqSARPRApVDDRGDprgpappsPLPPDTHAPDPPPPSPS--PA 2634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1970 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGT-GAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPS 2048
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPqRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHA 2714
|
170 180 190
....*....|....*....|....*....|....
gi 2462584298 2049 RAKSRPLPNMPKlvIPSAATKFPPEITVTPPTPT 2082
Cdd:PHA03247 2715 LVSATPLPPGPA--AARQASPALPAAPAPPAVPA 2746
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1869-2109 |
2.43e-07 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 55.74 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1869 AAAQRQASGDTPTTPKHPKdSRENFFPVTVVPTAPDPV----PADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLD 1944
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALP-SEAFSAPRAAACRANASAapraAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1945 QSKDPGPPRPHRPEATPSMASLGPE-GEELARVAEGTSFPPQEPRHSPQVKMAP-------------------TSSPAEP 2004
Cdd:pfam17823 199 ASSAPATLTPARGISTAATATGHPAaGTALAAVGNSSPAAGTVTAAVGTVTPAAlatlaaaagtvasaagtinMGDPHAR 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2005 HCWPAEAAlgtgaePTCSQAASSKAPSSGSAQ----------PPEGHPGKPEPSRAKSRPLPNMPKLVIPS--------- 2065
Cdd:pfam17823 279 RLSPAKHM------PSDTMARNPAAPMGAQAQgpiiqvstdqPVHNTAGEPTPSPSNTTLEPNTPKSVASTnlavvtttk 352
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2462584298 2066 AATKFPPEITVtPPTPTLLSPKGSISEETKQklKSAILSAQSAA 2109
Cdd:pfam17823 353 AQAKEPSASPV-PVLHTSMIPEVEATSPTTQ--PSPLLPTQGAA 393
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1867-2082 |
2.89e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.10 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1867 LGAAAQRQASGDTPTTPKHPKdsrenffpVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQS 1946
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHAL--------VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP 2766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1947 KDPGPPRPhrPEATPSMASLGPEGEELARVAEGTSFPPqEPRHSPQVKMAPTssPAEPhcwPAEAALGTGAEPTCSQAAS 2026
Cdd:PHA03247 2767 PAPAPPAA--PAAGPPRRLTRPAVASLSESRESLPSPW-DPADPPAAVLAPA--AALP---PAASPAGPLPPPTSAQPTA 2838
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2027 SKAPS--SGSAQPPEGH--PGKPEPSRAKSRPLPNMPklvipsAATKFPPEITVTPPTPT 2082
Cdd:PHA03247 2839 PPPPPgpPPPSLPLGGSvaPGGDVRRRPPSRSPAAKP------AAPARPPVRRLARPAVS 2892
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
35-160 |
3.01e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.86 E-value: 3.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 35 EAFALYHKALDLQKHDRFEESAKAYHELLEasllreavmLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWP 114
Cdd:COG0457 41 DAEALYNLGLAYLRLGRYEEALADYEQALE---------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE 111
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462584298 115 CLDNLITVLYTLSDYTTCLYFICKALEKDCRYSKGLVLKEKIFEEQ 160
Cdd:COG0457 112 ALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1869-2120 |
3.65e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.10 E-value: 3.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1869 AAAQRQASGDTPTTPKHPKDSRENFFP----VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASAS--- 1941
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPAPPAAPAAGpprrLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppp 2831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1942 TLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFP-PQEPRHSPQVKMA------PTSSPAEPHCWPAEAALG 2014
Cdd:PHA03247 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAkPAAPARPPVRRLArpavsrSTESFALPPDQPERPPQP 2911
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2015 TGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPN-MPKLVIPSAATKFPPEITVT-----PPTPTLLSPKG 2088
Cdd:PHA03247 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEpSGAVPQPWLGALVPGRVAVPrfrvpQPAPSREAPAS 2991
|
250 260 270
....*....|....*....|....*....|..
gi 2462584298 2089 SISEETKQKLkSAILSAQSAANVRKESLCQPA 2120
Cdd:PHA03247 2992 STPPLTGHSL-SRVSSWASSLALHEETDPPPV 3022
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
30-154 |
4.64e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.47 E-value: 4.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYhelleasllREAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCN 109
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDY---------EKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD 72
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2462584298 110 PDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD-----CRYSKGLVLKE 154
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALELDpddaeALYNLGLALLE 122
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1874-2079 |
1.03e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 54.11 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1874 QASGDT-PTTPKHPKDSRENffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASA-STLDQSKDPGP 1951
Cdd:PRK12323 367 QSGGGAgPATAAAAPVAQPA--PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlAAARQASARGP 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1952 PRPHRPEATPSMAslgPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPS 2031
Cdd:PRK12323 445 GGAPAPAPAPAAA---PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462584298 2032 SGSAQPpegHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPP 2079
Cdd:PRK12323 522 VAESIP---DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
34-154 |
4.65e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.39 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 34 AEAFALYHKALDLQKHDrfeesAKAYHEL----------LEA-SLLREAVMLDSTDVNLWYKIGHVALRLIRIPLARHAF 102
Cdd:COG0457 59 EEALADYEQALELDPDD-----AEALNNLglalqalgryEEAlEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAY 133
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2462584298 103 EEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDCRYSKGLVLKE 154
Cdd:COG0457 134 ERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGE 185
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
30-143 |
7.95e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 51.15 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavmLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCN 109
Cdd:COG3914 106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALA---------LNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
90 100 110
....*....|....*....|....*....|....
gi 2462584298 110 PDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 143
Cdd:COG3914 177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
1874-2119 |
8.50e-06 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 51.21 E-value: 8.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1874 QASGDTPTTPKHPKDSrenffPVTVVP----TAPDPVPADSVQRPSDAHTKPRPaLAAATTIITCP-------PSASAST 1942
Cdd:PHA03379 407 KASEPTYGTPRPPVEK-----PRPEVPqsleTATSHGSAQVPEPPPVHDLEPGP-LHDQHSMAPCPvaqlppgPLQDLEP 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1943 LDQskDPGPPRPHRPEATPSMASLGP---EGEELARVAEGTSFPPQEPRHSP-QVKMAPTSSPAEPHC-WPAEAALGTGA 2017
Cdd:PHA03379 481 GDQ--LPGVVQDGRPACAPVPAPAGPivrPWEASLSQVPGVAFAPVMPQPMPvEPVPVPTVALERPVCpAPPLIAMQGPG 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2018 EPTCS-QAASSKAPSSGSAQPPEghpgKPEPSRAKSRPLPNMPKLVIPSAATKF-PPEITVTPPTPTLLSPKGSISEETK 2095
Cdd:PHA03379 559 ETSGIvRVRERWRPAPWTPNPPR----SPSQMSVRDRLARLRAEAQPYQASVEVqPPQLTQVSPQQPMEYPLEPEQQMFP 634
|
250 260 270
....*....|....*....|....*....|.
gi 2462584298 2096 QKLKSAILSAQSAANV-------RKESLCQP 2119
Cdd:PHA03379 635 GSPFSQVADVMRAGGVpamqpqyFDLPLQQP 665
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1878-2122 |
8.58e-06 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 51.22 E-value: 8.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1878 DTPTTPKHP---KDSRENFFPVTVVPTAP---DPVPADSVQRPSdAHTKPRPALAAATTIITCPPSASAstldQSKDPGP 1951
Cdd:PHA03378 607 EPPTTQSHIpetSAPRQWPMPLRPIPMRPlrmQPITFNVLVFPT-PHQPPQVEITPYKPTWTQIGHIPY----QPSPTGA 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1952 PRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSP-------AEPHCWPAEAALGTGAEPtcSQA 2024
Cdd:PHA03378 682 NTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPgrarppaAAPGRARPPAAAPGRARP--PAA 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2025 ASSKAPSSGSA-------QPPEGHPGKPEPSRAKSRPLPnmpklvipsaatkfPPEItvtPPTPTLLSPKGSISEETKQK 2097
Cdd:PHA03378 760 APGRARPPAAApgaptpqPPPQAPPAPQQRPRGAPTPQP--------------PPQA---GPTSMQLMPRAAPGQQGPTK 822
|
250 260
....*....|....*....|....*
gi 2462584298 2098 LKSAILSAQSAANVRKESLCQPALE 2122
Cdd:PHA03378 823 QILRQLLTGGVKRGRPSLKKPAALE 847
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1869-2110 |
1.29e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 50.62 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1869 AAAQRQASGDTPTTPKHPKdsrenffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKD 1948
Cdd:PRK07003 395 AVPAVTAVTGAAGAALAPK-------AAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERD 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1949 PGPPRPHRPEATPSMASLGPegeelarvaegtsfPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSK 2028
Cdd:PRK07003 468 AQPPADSGSASAPASDAPPD--------------AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2029 APSSGSAQPPEGHPGKPEP-----------SRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSiseeTKQK 2097
Cdd:PRK07003 534 PPTPAAAAPAARAGGAAAAldvlrnagmrvSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAAT----GDAP 609
|
250
....*....|...
gi 2462584298 2098 LKSAILSAQSAAN 2110
Cdd:PRK07003 610 PNGAARAEQAAES 622
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1868-2093 |
1.55e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 50.55 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1868 GAAAQRQASGDTPTTPKHPKDSREnfFPVTVVPTAPDPVPADSVQRPSDahtkprPALAAATtiitcPPSASASTLDQSK 1947
Cdd:PHA03307 76 GTEAPANESRSTPTWSLSTLAPAS--PAREGSPTPPGPSSPDPPPPTPP------PASPPPS-----PAPDLSEMLRPVG 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1948 DPGPPRPHRPEATPSMASLGPEGEE-------LARVAEGTSFPPQEPRHSPQVKMAP---TSSPAEPHCWPAEAALGTGA 2017
Cdd:PHA03307 143 SPGPPPAASPPAAGASPAAVASDAAssrqaalPLSSPEETARAPSSPPAEPPPSTPPaaaSPRPPRRSSPISASASSPAP 222
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462584298 2018 EPTCSQAAS-SKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPeitvtPPTPTLLSPKGSISEE 2093
Cdd:PHA03307 223 APGRSAADDaGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGP-----SSRPGPASSSSSPRER 294
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1913-2094 |
2.24e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 49.49 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1913 RPSDAHTKPRPALAAATTIITCPPSASASTldqskdPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEP----R 1988
Cdd:PRK12323 364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPA------AAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlaaaR 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1989 HSPQVKMAPTSSPAephcwPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPklvipsaat 2068
Cdd:PRK12323 438 QASARGPGGAPAPA-----PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP--------- 503
|
170 180
....*....|....*....|....*.
gi 2462584298 2069 kfpPEITVTPPTPTLLSPKGSISEET 2094
Cdd:PRK12323 504 ---PEFASPAPAQPDAAPAGWVAESI 526
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1863-2083 |
2.71e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1863 CQVHLGAAAQRQASGDTPTTPKHPKDSRENffpvTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiiTCPPSASAST 1942
Cdd:PRK07764 582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEE----AARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP--GVAAPEHHPK 655
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1943 LDQSKDPGPPRPHRPEATPSMASLGPEGEelarvaegtsfPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPT-C 2021
Cdd:PRK07764 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPA-----------PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPqA 724
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462584298 2022 SQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTL 2083
Cdd:PRK07764 725 AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
1903-2063 |
2.96e-05 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 48.96 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1903 PDPVPADSVQrpsdAHTKPRPALAAATTIITCPPSASASTLDQSKDPGP-PRPHrpeatpSMASLGPEgeelarvaegts 1981
Cdd:PHA03269 40 PDPAPAPHQA----ASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPaPAPH------QAASRAPD------------ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1982 fppqePRHSPQVKMAPTSSPAEPhcwPAEAALGTGAEPTCSQAASSKAPSsgsaqpPEGHPGKPEPSRAKSRPLPNMPKL 2061
Cdd:PHA03269 98 -----PAVAPQLAAAPKPDAAEA---FTSAAQAHEAPADAGTSAASKKPD------PAAHTQHSPPPFAYTRSMEHIACT 163
|
..
gi 2462584298 2062 VI 2063
Cdd:PHA03269 164 HG 165
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
32-143 |
3.20e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 32 QEAEAFALYHKALDLQKHDR--FEESAKAYHEL--LE--ASLLREAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEG 105
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPeaFALLGEILLQLgdLDeaIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98
|
90 100 110
....*....|....*....|....*....|....*...
gi 2462584298 106 LRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 143
Cdd:COG4783 99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
1895-2001 |
4.80e-05 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 47.55 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1895 PVTVVPTAPDP-VPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHR--PEAT------PSMAS 1965
Cdd:PHA02682 76 PSGQSPLAPSPaCAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPacPPSTrqcppaPPLPT 155
|
90 100 110
....*....|....*....|....*....|....*..
gi 2462584298 1966 LGPEGEELARVAEGTSFPPQEPRHS-PQVKMAPTSSP 2001
Cdd:PHA02682 156 PKPAPAAKPIFLHNQLPPPDYPAAScPTIETAPAASP 192
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1875-2112 |
5.76e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.63 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1875 ASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATT--IITCPPSASA----STLDQSKD 1948
Cdd:PHA03307 124 ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPeeTARAPSSPPAepppSTPPAAAS 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1949 PGPPRPHRPEATPSM--ASLGPEGEELARVAEGTSFPPQE------------PRHSPQVKMAPT---------------- 1998
Cdd:PHA03307 204 PRPPRRSSPISASASspAPAPGRSAADDAGASSSDSSSSEssgcgwgpenecPLPRPAPITLPTriweasgwngpssrpg 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1999 -----SSPAEPHCWPAEAALGTGAEPTCSQAASSKAPS--SGSAQPPEGHPGK--------PEPSRAKSRPLPNmpklvi 2063
Cdd:PHA03307 284 passsSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSreSSSSSTSSSSESSrgaavspgPSPSRSPSPSRPP------ 357
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2064 PSAATKFPPE-ITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVR 2112
Cdd:PHA03307 358 PPADPSSPRKrPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1897-2087 |
5.81e-05 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 48.28 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1897 TVVPTAPDPVPADSVQRPSDAHTKPRPAlaaattiitcpPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARV 1976
Cdd:PRK14086 91 SAGEPAPPPPHARRTSEPELPRPGRRPY-----------EGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1977 AEGTSFPPQEPRH---SPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQ-----AASSKAPSSGSAQPPEGHPGKPEPS 2048
Cdd:PRK14086 160 RAADDYGWQQQRLgfpPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRdydhpRPDWDRPRRDRTDRPEPPPGAGHVH 239
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462584298 2049 RAkSRPLPNMPKLVIPSAATKFP------PEITVTPPTPTL-LSPK 2087
Cdd:PRK14086 240 RG-GPGPPERDDAPVVPIRPSAPgplaaqPAPAPGPGEPTArLNPK 284
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1869-2039 |
6.88e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.06 E-value: 6.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1869 AAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPaDSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKD 1948
Cdd:PRK07764 622 AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP-DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1949 PGPPRPHRP------EATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCS 2022
Cdd:PRK07764 701 PAPAPAATPpagqadDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
|
170
....*....|....*..
gi 2462584298 2023 QAASSKAPSSGSAQPPE 2039
Cdd:PRK07764 781 EEEEMAEDDAPSMDDED 797
|
|
| PRK13863 |
PRK13863 |
T-DNA border endonuclease VirD2; |
1864-2053 |
8.39e-05 |
|
T-DNA border endonuclease VirD2;
Pssm-ID: 237533 [Multi-domain] Cd Length: 446 Bit Score: 47.63 E-value: 8.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1864 QVHLGAAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTA-----PDPVPADSVQRPSDAHTKPRPALAAATtiitcppsa 1938
Cdd:PRK13863 258 EVRLQEPAGSSIKADARIRVSLESERRAQPSASKIPVADdfgieTSYVAEGDVRKLEGNSGTPRLATEVAT--------- 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1939 sASTLDQSkdPGPPRPHRPEATPSMASLGpegeELARVAEGTSFPPQEP--RHSPQVKMAPTSSPAEPHCwPAEAALGTG 2016
Cdd:PRK13863 329 -HTTSERQ--QRRKRPRDDEGEPSGAKRT----RLNGIAVGPEANAGEQdgRDDPITSPAQPPRSNPLAD-PVRASIATD 400
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462584298 2017 AEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSR 2053
Cdd:PRK13863 401 SLPATADRQQQREPSSKRPRDDDGEPSIRKRARDGRS 437
|
|
| PHA03381 |
PHA03381 |
tegument protein VP22; Provisional |
1886-2029 |
8.54e-05 |
|
tegument protein VP22; Provisional
Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 46.93 E-value: 8.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1886 PKDSRENFFPVTVVPTAPDPVPAD-SVQRPSDAHTKPRPALAAAT----------TIITCPPSASASTLDQSKDPGPPRP 1954
Cdd:PHA03381 11 PHGTDEVEADVYYDFISPDASPARvSFEEPADRARRGAGQARGRSqaerrfhhydEARADYPYYTGSSSEDERPADPRPS 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462584298 1955 HRPEATPSM----ASLGPEGEELARVAEGTSFPPqEPRHSPQVKMAPTSSPAEPHCwPAEAALGTGAEPTCSQAASSKA 2029
Cdd:PHA03381 91 RRPHAQPEAsgpgPARGARGPAGSRGRGRRAESP-SPRDPPNPKGASAPRGRKSAC-ADSAALLDAPAPAAPKRQKTPA 167
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
1883-2086 |
1.16e-04 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 47.23 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1883 PKHPkDSRENFFPVTVVPTAPD-PVPADSVQRPSDAHTKPRPA--------LAAATTIITCPPS---ASASTLDQSKDPG 1950
Cdd:PLN03209 330 PKES-DAADGPKPVPTKPVTPEaPSPPIEEEPPQPKAVVPRPLspytayedLKPPTSPIPTPPSsspASSKSVDAVAKPA 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1951 PPRPH-RPEATPSMASLGPEGEELARVAEGTSF-------PPQEPRHSPQVKMAPTSS-----PAEPHCWPAEAALGTGA 2017
Cdd:PLN03209 409 EPDVVpSPGSASNVPEVEPAQVEAKKTRPLSPYaryedlkPPTSPSPTAPTGVSPSVSstssvPAVPDTAPATAATDAAA 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2018 EPTCSQAASSKAPSSGSAQPPEG-HPGKPEPSRAKSRPlPNMPKLVIPSAATKFPPEITVTPPTPTLLSP 2086
Cdd:PLN03209 489 PPPANMRPLSPYAVYDDLKPPTSpSPAAPVGKVAPSST-NEVVKVGNSAPPTALADEQHHAQPKPRPLSP 557
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
1896-2081 |
1.58e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 46.91 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1896 VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSA-----SASTLDQSKDPGPPRPhRPEATPSMASLGPEG 1970
Cdd:PRK12727 62 TPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAaedmiAAMALRQPVSVPRQAP-AAAPVRAASIPSPAA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1971 EELARVAEGTSFPPQE----PRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPG-KP 2045
Cdd:PRK12727 141 QALAHAAAVRTAPRQEhalsAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGfDL 220
|
170 180 190
....*....|....*....|....*....|....*.
gi 2462584298 2046 EPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTP 2081
Cdd:PRK12727 221 DDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1895-2091 |
2.00e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.70 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1895 PVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAA-----TTIITCPPSASASTLDQSKDPGPpRPHRPEATPSMASLGPE 1969
Cdd:PHA03307 25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGaaacdRFEPPTGPPPGPGTEAPANESRS-TPTWSLSTLAPASPARE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1970 GEELARVAEGTSFPPQ-EPRHSPqvkmAPTSSPAEPHCWPAEAALGTGAeptcsqAASSKAPSSGSAQPPEGHPGKPEPS 2048
Cdd:PHA03307 104 GSPTPPGPSSPDPPPPtPPPASP----PPSPAPDLSEMLRPVGSPGPPP------AASPPAAGASPAAVASDAASSRQAA 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462584298 2049 RAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSIS 2091
Cdd:PHA03307 174 LPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISAS 216
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
1847-2081 |
2.17e-04 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 46.30 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1847 IKQVDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPKHPKDSRenffpvtvvPTAPDPvpadsvqrpsdaHTKPRPALA 1926
Cdd:NF033839 248 IDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKK---------PSAPKP------------GMQPSPQPE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1927 AAttiitcPPSASASTLDQSKDPGPPRPhRPEATPSmaslgPEGEElarvaegTSFPPQEPRHSPQVKMAPTSSPAEPHC 2006
Cdd:NF033839 307 KK------EVKPEPETPKPEVKPQLEKP-KPEVKPQ-----PEKPK-------PEVKPQLETPKPEVKPQPEKPKPEVKP 367
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462584298 2007 WPAEAALGTGAEPTCSQAASSKAPSsgsAQPPEGHPgKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTP 2081
Cdd:NF033839 368 QPEKPKPEVKPQPETPKPEVKPQPE---KPKPEVKP-QPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKP 438
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1863-2087 |
2.74e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 46.30 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1863 CQVHLGAAAQRQASGDTPTTPKHPKDSREnffPVTVVPTAPDPV--PADSVQRPSDAHTKPRPALAAATTIITCPPsasa 1940
Cdd:pfam03154 184 PSPPPPGTTQAATAGPTPSAPSVPPQGSP---ATSQPPNQTQSTaaPHTLIQQTPTLHPQRLPSPHPPLQPMTQPP---- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1941 stldqskdpgPPRPHRPEATPSMASLGPegeelarvaegtsFPPQEprHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPT 2020
Cdd:pfam03154 257 ----------PPSQVSPQPLPQPSLHGQ-------------MPPMP--HSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPP 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462584298 2021 CSQAASSKAPSSGSAQPP-EGHPGKPEPSRakSRPLPNMPkLVIPSAAtkfPPEITVTPPTPTLLSPK 2087
Cdd:pfam03154 312 GPSPAAPGQSQQRIHTPPsQSQLQSQQPPR--EQPLPPAP-LSMPHIK---PPPTTPIPQLPNPQSHK 373
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1868-2055 |
2.89e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.47 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1868 GAAAQRQASGD---TPTTPKHPKDSRENFFPVTvVPTAPDPVPADSVQRPSdahtkprpalaaattiitcPPSASASTLD 1944
Cdd:PHA03247 2860 GDVRRRPPSRSpaaKPAAPARPPVRRLARPAVS-RSTESFALPPDQPERPP-------------------QPQAPPPPQP 2919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1945 QSKDPGPPRPHRPEATPSMaslgpegeelarvaegtsfPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEP--TCS 2022
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPR-------------------PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPrfRVP 2980
|
170 180 190
....*....|....*....|....*....|...
gi 2462584298 2023 QAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPL 2055
Cdd:PHA03247 2981 QPAPSREAPASSTPPLTGHSLSRVSSWASSLAL 3013
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1907-2110 |
3.28e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.02 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1907 PADSVQRPSDAhtkPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHR---PEATPSMASLGPEGEELARVAEGTSFP 1983
Cdd:PRK12323 374 PATAAAAPVAQ---PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAaapARRSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1984 PQEPRHSPqvkmAPTSSPAEPHcwPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGK-PEPSRAKSRPLPNM---- 2058
Cdd:PRK12323 451 APAPAAAP----AAAARPAAAG--PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEfASPAPAQPDAAPAGwvae 524
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462584298 2059 ----PKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAAN 2110
Cdd:PRK12323 525 sipdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1891-2047 |
3.52e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.93 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1891 ENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAattiitcPPSASASTLDQSKDPGPPrphrPEATPSMASLGP-E 1969
Cdd:PHA03307 62 CDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPA-------SPAREGSPTPPGPSSPDP----PPPTPPPASPPPsP 130
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462584298 1970 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEP 2047
Cdd:PHA03307 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
29-160 |
5.62e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.95 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 29 KEAQEAEAFALYHKALDLQkhdrfEESAKAYHELLEASL-----------LREAVMLDSTDVNLWYKIGHVALRLIRIPL 97
Cdd:COG2956 122 QEGDWEKAIEVLERLLKLG-----PENAHAYCELAELYLeqgdydeaieaLEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462584298 98 ARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDCRYSKGLVLKEKIFEEQ 160
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKE 259
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
1848-2095 |
6.01e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.08 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1848 KQVDEEAALEQAVKfcqvhlGAAAQRQA---SGDTPTTPKHPK-DSRENFFPVT--VVPTAPDPVPADSVQRPSDAHTkP 1921
Cdd:PRK10263 270 KRMDDDEEITYTAR------GVAADPDDvlfSGNRATQPEYDEyDPLLNGAPITepVAVAAAATTATQSWAAPVEPVT-Q 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1922 RPALAAATTIITCPpsasasTLDQSKDPGPprpHRPEatPSMAslgPEGEELARVAEGTSfpPQEPRHSPQVKMAPTSSP 2001
Cdd:PRK10263 343 TPPVASVDVPPAQP------TVAWQPVPGP---QTGE--PVIA---PAPEGYPQQSQYAQ--PAVQYNEPLQQPVQPQQP 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2002 AEPHCWPAEAALGTGAePTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPN-MPKLVIPSAATKFPPEITVTPPT 2080
Cdd:PRK10263 407 YYAPAAEQPAQQPYYA-PAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTyQTEQTYQQPAAQEPLYQQPQPVE 485
|
250
....*....|....*
gi 2462584298 2081 PTLLSPKGSISEETK 2095
Cdd:PRK10263 486 QQPVVEPEPVVEETK 500
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1870-2054 |
6.36e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.87 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1870 AAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPA------DSVQRPSDAHTKPRPALAAATTIITCPPSASASTL 1943
Cdd:PRK12323 393 AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEalaaarQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPV 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1944 DQSKDPGPPRPHRPEATPSMASLGPEGEELarvaegtsfPPQEPRHSP-QVKMAPTSSPAEPHCWPAEAALGTGAEPTCS 2022
Cdd:PRK12323 473 AAAAAAAPARAAPAAAPAPADDDPPPWEEL---------PPEFASPAPaQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
|
170 180 190
....*....|....*....|....*....|..
gi 2462584298 2023 QAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP 2054
Cdd:PRK12323 544 APAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| sucB |
TIGR01347 |
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ... |
1970-2076 |
6.38e-04 |
|
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]
Pssm-ID: 273565 [Multi-domain] Cd Length: 403 Bit Score: 44.34 E-value: 6.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1970 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHcwPAEAALGTGAEPTCSQAASSKAPSsgSAQPPEGHPG------ 2043
Cdd:TIGR01347 68 GQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAA--PTAAANRPSLSPAARRLAKEHGID--LSAVPGTGVTgrvtke 143
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462584298 2044 ---KPEPSRAKSRPLPNMPKLVIPSAATKfpPEITV 2076
Cdd:TIGR01347 144 diiKKTEAPASAQPPAAAAAAAAPAAATR--PEERV 177
|
|
| PHA03325 |
PHA03325 |
nuclear-egress-membrane-like protein; Provisional |
1938-2089 |
8.69e-04 |
|
nuclear-egress-membrane-like protein; Provisional
Pssm-ID: 223044 Cd Length: 418 Bit Score: 44.10 E-value: 8.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1938 ASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQ-----VKMAPTSSPAEPhcwPAEAA 2012
Cdd:PHA03325 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPppvrrPRVKHPEAGKEE---PDGAR 335
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462584298 2013 LGTGAEPTCSqAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPsaATKFPPEITVTPPTPTLLSPKGS 2089
Cdd:PHA03325 336 NAEAKEPAQP-ATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSP--PLDLTTSLRHMPSPSVTSAPEPP 409
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1850-2039 |
1.01e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.10 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1850 VDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADS-----VQRPSDAHTKPRPA 1924
Cdd:PRK12323 395 AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAaapaaAARPAAAGPRPVAA 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1925 LAAATTIITCPPSASAStldqSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPP--QEPRHSPQVKMAPTSSPA 2002
Cdd:PRK12323 475 AAAAAPARAAPAAAPAP----ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAtaDPDDAFETLAPAPAAAPA 550
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462584298 2003 EphcwPAEAALGTGAEPTCSQAASSKAPSSGSAQPPE 2039
Cdd:PRK12323 551 P----RAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
1879-2090 |
1.06e-03 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 44.28 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1879 TPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIitcpPSASASTLDQSKDPGPPRPHRPe 1958
Cdd:PHA03379 473 GPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVM----PQPMPVEPVPVPTVALERPVCP- 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1959 ATPSMASLGP-EGEELARVAE---GTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTgaEPTCSQAASSKAPSSGS 2034
Cdd:PHA03379 548 APPLIAMQGPgETSGIVRVRErwrPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEV--QPPQLTQVSPQQPMEYP 625
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462584298 2035 AQPPEG-HPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSI 2090
Cdd:PHA03379 626 LEPEQQmFPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGPV 682
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
1904-2088 |
1.75e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 43.04 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1904 DPVPADSVQRPSDAHTKPRPALAAATTIitcppsASASTLDQSKDPGPP-RPHRPEATPSMASLGPEGEELARVAEGTSF 1982
Cdd:PRK13108 281 APGALRGSEYVVDEALEREPAELAAAAV------ASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVAD 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1983 PPQEPRHSPQVKMAPTSSPAEPHCWPAEAAlgtgAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKlv 2062
Cdd:PRK13108 355 RDGESTPAVEETSEADIEREQPGDLAGQAP----AAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAK-- 428
|
170 180
....*....|....*....|....*.
gi 2462584298 2063 ipsaatkfPPEITVTPPTPTLLSPKG 2088
Cdd:PRK13108 429 --------PDELAVAGPGDDPAEPDG 446
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1696-2083 |
1.79e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1696 ADQSGERKDKESPRAGPTEPmdTSEATVCH-SDLERTPPllPGRPardrgPESRPTELS----LEELSISARQQ--PTPL 1768
Cdd:PHA03247 2667 ARRLGRAAQASSPPQRPRRR--AARPTVGSlTSLADPPP--PPPT-----PEPAPHALVsatpLPPGPAAARQAspALPA 2737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1769 TPAQPAPAPAPATTTGTRAGGHPEEPLSRLSrkrklledtesgktllldayrvwqqgqkgvaydlgrverimsetymlik 1848
Cdd:PHA03247 2738 APAPPAVPAGPATPGGPARPARPPTTAGPPA------------------------------------------------- 2768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1849 qvdeeaaleqavkfcqvhlGAAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAA 1928
Cdd:PHA03247 2769 -------------------PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP 2829
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1929 TTIITCP--------PSASASTLDQSKDPGPP----RPHRPEATPSMASLGPEGEELARVA-----EGTSFPPQEPRHSP 1991
Cdd:PHA03247 2830 PPTSAQPtapppppgPPPPSLPLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLARPAvsrstESFALPPDQPERPP 2909
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1992 QVKMAPTSSPAEPhcwPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP-LPNMPKLVIPSAAtkf 2070
Cdd:PHA03247 2910 QPQAPPPPQPQPQ---PPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPA--- 2983
|
410
....*....|...
gi 2462584298 2071 PPEITVTPPTPTL 2083
Cdd:PHA03247 2984 PSREAPASSTPPL 2996
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1911-2081 |
1.80e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.60 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1911 VQRPSDAHTKPRPALAAATTIITCPPSASASTLD-QSKDPGPPRPHRPEATPSMASLGPEGEELarvaegtsFPPQEPR- 1988
Cdd:pfam03154 174 LQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPpQGSPATSQPPNQTQSTAAPHTLIQQTPTL--------HPQRLPSp 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1989 HSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNmPKLVIPSAAT 2068
Cdd:pfam03154 246 HPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPS-PAAPGQSQQR 324
|
170
....*....|...
gi 2462584298 2069 KFPPEITVTPPTP 2081
Cdd:pfam03154 325 IHTPPSQSQLQSQ 337
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1-143 |
2.09e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.10 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1 MIRIAALNASSTIEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKhdRFEESAKAYhelleasllREAVMLDSTDVN 80
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG--DFEESLALL---------EQALQLDPNNPE 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462584298 81 LWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 143
Cdd:COG5010 90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1637-2089 |
2.40e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1637 PGARMTTDVSHKASPEDGQEGLPQPKKPPLADGSGPGPEPGGKvgLLNHRPVAMDAGDSADQSGERKDKESPRAGPTEpm 1716
Cdd:PHA03307 49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWS--LSTLAPASPAREGSPTPPGPSSPDPPPPTPPPA-- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1717 dtseatvchSDLERTPPLLPGrPARDRGPESRPTELSLEELSISARQQPTPLTPAQPAPAPAPATTTGTRAGGHPEEPLs 1796
Cdd:PHA03307 125 ---------SPPPSPAPDLSE-MLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP- 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1797 RLSRKRKLLEDTESGKtllldaYRVWQQGQKGVAYDLGRVERimsetymlikqVDEEAALEQAVKFCQVHLGAAAQRQAS 1876
Cdd:PHA03307 194 PPSTPPAAASPRPPRR------SSPISASASSPAPAPGRSAA-----------DDAGASSSDSSSSESSGCGWGPENECP 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1877 GDTPTTPKHPKDSREnffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHR 1956
Cdd:PHA03307 257 LPRPAPITLPTRIWE---ASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1957 PEATPSMASLGPEGEELARvaegtsfpPQEPRHSPQVKMAPTSSPAEPhcwpaeaalgtgAEPTCSQAASSKAPSSGSAQ 2036
Cdd:PHA03307 334 ESSRGAAVSPGPSPSRSPS--------PSRPPPPADPSSPRKRPRPSR------------APSSPAASAGRPTRRRARAA 393
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 2462584298 2037 PPEghpgkPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPtptLLSPKGS 2089
Cdd:PHA03307 394 VAG-----RARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP---LLTPSGE 438
|
|
| PHA03291 |
PHA03291 |
envelope glycoprotein I; Provisional |
1893-2087 |
3.11e-03 |
|
envelope glycoprotein I; Provisional
Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 42.25 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1893 FFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiiTCPPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEE 1972
Cdd:PHA03291 203 FVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPST--TIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASR 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1973 -----------------LARVAEGTSF-----PPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGT-GAEptcsqaasska 2029
Cdd:PHA03291 281 yeltvtqiiqiaipasiIACVFLGSCAcclhrRCRRRRRRPARIYRPPSPVAPSISAVNEAALARlGDE----------- 349
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462584298 2030 pssgsaqpPEGHPGKPePSRAKSRPLPN-MPKLVIPSAATKFP--PEITVTPPTPTLLSPK 2087
Cdd:PHA03291 350 --------LKRHPPES-PRRSKRRSSQTmVPSLTAISEESEAPavVELSRSPRRPGGPTAR 401
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1924-2096 |
3.69e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.47 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1924 ALAAATTIITCPPSASAstlDQSKDP--GPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHspqvkMAPTSSP 2001
Cdd:PHA03307 13 AAAEGGEFFPRPPATPG---DAADDLlsGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGT-----EAPANES 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2002 AEPHCWPAEAALGTGAEPTCSQAASSkaPSSGSAQPPEGHPGKPEPSRA-------KSRPLPNMPKLVIPSAATKFPPEI 2074
Cdd:PHA03307 85 RSTPTWSLSTLAPASPAREGSPTPPG--PSSPDPPPPTPPPASPPPSPApdlsemlRPVGSPGPPPAASPPAAGASPAAV 162
|
170 180
....*....|....*....|..
gi 2462584298 2075 TVTPPTPTLLSPKGSISEETKQ 2096
Cdd:PHA03307 163 ASDAASSRQAALPLSSPEETAR 184
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1871-2003 |
4.30e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.07 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1871 AQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASA---------- 1940
Cdd:PRK14971 360 AQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVdppaavpvnp 439
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462584298 1941 -STLDQSKDPGPPRPHRPEATPSMASLGPegeelarvaeGTSFPPQEPRHSPQ--VKMAPTSSPAE 2003
Cdd:PRK14971 440 pSTAPQAVRPAQFKEEKKIPVSKVSSLGP----------STLRPIQEKAEQATgnIKEAPTGTQKE 495
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1913-2043 |
4.34e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.01 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1913 RPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPhRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQ 1992
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462584298 1993 VKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPG 2043
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1922-2086 |
4.49e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.01 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1922 RPALAAATtiitcPPSASASTldqskdpgpprPHRPEATPSMASlgpegeelarvaegtsfpPQEPRHSpqvkmAPTSSP 2001
Cdd:PRK14951 365 KPAAAAEA-----AAPAEKKT-----------PARPEAAAPAAA------------------PVAQAAA-----APAPAA 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 2002 AEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTP 2081
Cdd:PRK14951 406 APAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485
|
....*
gi 2462584298 2082 TLLSP 2086
Cdd:PRK14951 486 ARLTP 490
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1949-2050 |
5.70e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.90 E-value: 5.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1949 PGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPP-QEPRHSPQVKMAPTSSPAEPHCWPAEAALGTgAEPTCSQAASS 2027
Cdd:PRK07764 396 AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPaPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS-AQPAPAPAAAP 474
|
90 100
....*....|....*....|...
gi 2462584298 2028 KAPSSGSAQPPEGHPGKPEPSRA 2050
Cdd:PRK07764 475 EPTAAPAPAPPAAPAPAAAPAAP 497
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
32-112 |
6.05e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.02 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 32 QEAEAFALYHKALDLQKHD--------RFEESAKAYHEllEASLLREAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFE 103
Cdd:COG4783 53 DLDEAIVLLHEALELDPDEpearlnlgLALLKAGDYDE--ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130
|
....*....
gi 2462584298 104 EGLRCNPDH 112
Cdd:COG4783 131 KALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
67-143 |
7.42e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 7.42e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462584298 67 LLREAVMLDSTDVNLWYKIGHVALRLIRIPLARhAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 143
Cdd:COG3063 14 YYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1883-2081 |
7.95e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1883 PKHPKDSREnffPVTVVPTAPDPVPADSVQRPSDAHTKPrpalaaattiitcPPSASASTLDQSKDPGPPRPhrpeatPS 1962
Cdd:PHA03247 2475 PGAPVYRRP---AEARFPFAAGAAPDPGGGGPPDPDAPP-------------APSRLAPAILPDEPVGEPVH------PR 2532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1963 MASLGPEGEELARVAEGTSFPPQEPRHSPQV--KMAPTSSPAEPHCWPAEAALGT--GAEPtcsQAASSKAPSSGSAQPP 2038
Cdd:PHA03247 2533 MLTWIRGLEELASDDAGDPPPPLPPAAPPAApdRSVPPPRPAPRPSEPAVTSRARrpDAPP---QSARPRAPVDDRGDPR 2609
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462584298 2039 -EGHPGKPEPSRAKSRPLPNMPKlviPSAATKFPPEITVTPPTP 2081
Cdd:PHA03247 2610 gPAPPSPLPPDTHAPDPPPPSPS---PAANEPDPHPPPTVPPPE 2650
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1913-2115 |
8.42e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.39 E-value: 8.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1913 RPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPrPHRPEATPSMASLGPEGEELARVAEGTsfpPQEPRHSPQ 1992
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAV-PPPPASAPQQAPAVPLPETTSQLLAAR---QQLQRAQGA 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1993 VKmAPTSSPAEPhcwpaeaalgTGAEPTcSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSR-PLPNMPKLVIPSAATKFP 2071
Cdd:PRK07994 436 TK-AKKSEPAAA----------SRARPV-NSALERLASVRPAPSALEKAPAKKEAYRWKATnPVEVKKEPVATPKALKKA 503
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462584298 2072 PEITVTPPTPTLLSPKGSISE---ETKQKLKSAILSAQSAANVRKES 2115
Cdd:PRK07994 504 LEHEKTPELAAKLAAEAIERDpwaALVSQLGLPGLVEQLALNAWKEE 550
|
|
| PLN03237 |
PLN03237 |
DNA topoisomerase 2; Provisional |
1851-2054 |
9.81e-03 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 41.39 E-value: 9.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1851 DEEAALEQAVKfcQVHLGAAAQrqASGDTPTTPKHPKDSRENFFPVtvvPTAPDPVPADSVQRPSDAHTKPRPAlaaATT 1930
Cdd:PLN03237 1261 DEILDLKDRLA--AYNLDSAPA--QSAKMEETVKAVPARRAAARKK---PLASVSVISDSDDDDDDFAVEVSLA---ERL 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462584298 1931 IITCPPSASASTLDQSKDPGPPRPHRPEATPSMASLgpEGEELARVAEGTSFPPQEPRhspqvKMAPTSSPAEphcwpAE 2010
Cdd:PLN03237 1331 KKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKL--LTEMLKPAEAIGISPEKKVR-----KMRASPFNKK-----SG 1398
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462584298 2011 AALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP 2054
Cdd:PLN03237 1399 SVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQ 1442
|
|
| |
