zinc finger matrin-type protein 5 isoform X1 [Homo sapiens]
zinc finger CCCH domain-containing protein( domain architecture ID 10432628)
zinc finger CCCH domain-containing protein similar to Homo sapiens zinc finger matrin-type protein 5, a component of the U11/U12 snRNPs that are part of the U12-type spliceosome
List of domain hits
Name | Accession | Description | Interval | E-value | ||
zf-CCCH | pfam00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar); |
54-76 | 1.72e-05 | ||
Zinc finger C-x8-C-x5-C-x3-H type (and similar); : Pssm-ID: 459885 [Multi-domain] Cd Length: 27 Bit Score: 39.87 E-value: 1.72e-05
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zf-U1 super family | cl22907 | U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) ... |
4-46 | 6.21e-05 | ||
U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilize U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. The actual alignment was detected with superfamily member COG5136: Pssm-ID: 389966 [Multi-domain] Cd Length: 188 Bit Score: 41.61 E-value: 6.21e-05
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Name | Accession | Description | Interval | E-value | |||
zf-CCCH | pfam00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar); |
54-76 | 1.72e-05 | |||
Zinc finger C-x8-C-x5-C-x3-H type (and similar); Pssm-ID: 459885 [Multi-domain] Cd Length: 27 Bit Score: 39.87 E-value: 1.72e-05
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COG5136 | COG5136 | U1 snRNP-specific protein C [RNA processing and modification]; |
4-46 | 6.21e-05 | |||
U1 snRNP-specific protein C [RNA processing and modification]; Pssm-ID: 227465 [Multi-domain] Cd Length: 188 Bit Score: 41.61 E-value: 6.21e-05
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zf-U1 | pfam06220 | U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) ... |
2-38 | 1.47e-04 | |||
U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilize U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. Pssm-ID: 368798 Cd Length: 38 Bit Score: 37.42 E-value: 1.47e-04
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COG5152 | COG5152 | Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function ... |
3-96 | 4.45e-04 | |||
Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]; Pssm-ID: 227481 [Multi-domain] Cd Length: 259 Bit Score: 39.29 E-value: 4.45e-04
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ZnF_C3H1 | smart00356 | zinc finger; |
55-76 | 2.22e-03 | |||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 34.14 E-value: 2.22e-03
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Name | Accession | Description | Interval | E-value | |||
zf-CCCH | pfam00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar); |
54-76 | 1.72e-05 | |||
Zinc finger C-x8-C-x5-C-x3-H type (and similar); Pssm-ID: 459885 [Multi-domain] Cd Length: 27 Bit Score: 39.87 E-value: 1.72e-05
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COG5136 | COG5136 | U1 snRNP-specific protein C [RNA processing and modification]; |
4-46 | 6.21e-05 | |||
U1 snRNP-specific protein C [RNA processing and modification]; Pssm-ID: 227465 [Multi-domain] Cd Length: 188 Bit Score: 41.61 E-value: 6.21e-05
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zf-U1 | pfam06220 | U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) ... |
2-38 | 1.47e-04 | |||
U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilize U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. Pssm-ID: 368798 Cd Length: 38 Bit Score: 37.42 E-value: 1.47e-04
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zf-CCCH_4 | pfam18044 | CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and ... |
55-76 | 3.99e-04 | |||
CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and one histidine to coordinate the zinc ion. This domain is found in a wide variety of proteins such as E3 ligases. Pssm-ID: 465626 Cd Length: 22 Bit Score: 36.03 E-value: 3.99e-04
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COG5152 | COG5152 | Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function ... |
3-96 | 4.45e-04 | |||
Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]; Pssm-ID: 227481 [Multi-domain] Cd Length: 259 Bit Score: 39.29 E-value: 4.45e-04
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ZnF_C3H1 | smart00356 | zinc finger; |
55-76 | 2.22e-03 | |||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 34.14 E-value: 2.22e-03
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
57-76 | 5.14e-03 | |||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 33.16 E-value: 5.14e-03
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Blast search parameters | ||||
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