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Conserved domains on  [gi|2462490212|ref|XP_054184878|]
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interferon regulatory factor 7 isoform X4 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IRF-3 super family cl11061
Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the ...
 2-170 3.19e-45

Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha,beta-stimulated gene). IRF-3 preexists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection.


The actual alignment was detected with superfamily member pfam10401:

Pssm-ID: 463076  Cd Length: 180  Bit Score: 148.17  E-value: 3.19e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462490212   2 YKGRTVLQKVVGHP-SCTFLYGPPDPAVR---ATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARR 77
Cdd:pfam10401  10 YRGRLVLELTVSSPeGCRLSYGPPDPQVAlygPVALQQVRFPDPDGIPDERQREYTRRLLNVLERGLLLWVAGQGLYAKR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462490212  78 MGKCKVYWEVGGPPGSASPstpaCLLPRNCDTPIFDFRVFFQELVEFRaRQRRGSPRYTIYLGFGQDLSAGRPKEKSLVL 157
Cdd:pfam10401  90 LCQSRVFWSGPEAPGGDKP----NKLERDATVKLFDLAKFLRELILFQ-EGRGRSPDYTITLCFGEEWPDDKPREKKLIT 164

                         170
                  ....*....|...
gi 2462490212 158 VKLEPWLCRVHLE 170
Cdd:pfam10401 165 VQVVPLFARQLLE 177
 
Name Accession Description Interval E-value
IRF-3 pfam10401
Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the ...
 2-170 3.19e-45

Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha,beta-stimulated gene). IRF-3 preexists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection.


Pssm-ID: 463076  Cd Length: 180  Bit Score: 148.17  E-value: 3.19e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462490212   2 YKGRTVLQKVVGHP-SCTFLYGPPDPAVR---ATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARR 77
Cdd:pfam10401  10 YRGRLVLELTVSSPeGCRLSYGPPDPQVAlygPVALQQVRFPDPDGIPDERQREYTRRLLNVLERGLLLWVAGQGLYAKR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462490212  78 MGKCKVYWEVGGPPGSASPstpaCLLPRNCDTPIFDFRVFFQELVEFRaRQRRGSPRYTIYLGFGQDLSAGRPKEKSLVL 157
Cdd:pfam10401  90 LCQSRVFWSGPEAPGGDKP----NKLERDATVKLFDLAKFLRELILFQ-EGRGRSPDYTITLCFGEEWPDDKPREKKLIT 164

                         170
                  ....*....|...
gi 2462490212 158 VKLEPWLCRVHLE 170
Cdd:pfam10401 165 VQVVPLFARQLLE 177
DWB smart00524
Domain B in dwarfin family proteins;
53-146 2.20e-04

Domain B in dwarfin family proteins;


Pssm-ID: 197770  Cd Length: 171  Bit Score: 40.37  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462490212   53 TEELLRHVAPGLHLELRGPQLWARRMGKCKVYweVGGPPGSA---SPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQR 129
Cdd:smart00524  53 TELIRKHIGKGVQLSYENGDVWLYNRSDSPIF--VQSPYLDEpggRTLDTVHKLPPGYSIKVFDMEKFAQLLARELAKGF 130

                           90       100
                   ....*....|....*....|....*
gi 2462490212  130 RGSPRYTIYL--------GFGQDLS 146
Cdd:smart00524 131 EGVYDLARMCtirisfvkGWGPDYS 155
 
Name Accession Description Interval E-value
IRF-3 pfam10401
Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the ...
 2-170 3.19e-45

Interferon-regulatory factor 3; This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha,beta-stimulated gene). IRF-3 preexists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection.


Pssm-ID: 463076  Cd Length: 180  Bit Score: 148.17  E-value: 3.19e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462490212   2 YKGRTVLQKVVGHP-SCTFLYGPPDPAVR---ATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARR 77
Cdd:pfam10401  10 YRGRLVLELTVSSPeGCRLSYGPPDPQVAlygPVALQQVRFPDPDGIPDERQREYTRRLLNVLERGLLLWVAGQGLYAKR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462490212  78 MGKCKVYWEVGGPPGSASPstpaCLLPRNCDTPIFDFRVFFQELVEFRaRQRRGSPRYTIYLGFGQDLSAGRPKEKSLVL 157
Cdd:pfam10401  90 LCQSRVFWSGPEAPGGDKP----NKLERDATVKLFDLAKFLRELILFQ-EGRGRSPDYTITLCFGEEWPDDKPREKKLIT 164

                         170
                  ....*....|...
gi 2462490212 158 VKLEPWLCRVHLE 170
Cdd:pfam10401 165 VQVVPLFARQLLE 177
DWB smart00524
Domain B in dwarfin family proteins;
53-146 2.20e-04

Domain B in dwarfin family proteins;


Pssm-ID: 197770  Cd Length: 171  Bit Score: 40.37  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462490212   53 TEELLRHVAPGLHLELRGPQLWARRMGKCKVYweVGGPPGSA---SPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQR 129
Cdd:smart00524  53 TELIRKHIGKGVQLSYENGDVWLYNRSDSPIF--VQSPYLDEpggRTLDTVHKLPPGYSIKVFDMEKFAQLLARELAKGF 130

                           90       100
                   ....*....|....*....|....*
gi 2462490212  130 RGSPRYTIYL--------GFGQDLS 146
Cdd:smart00524 131 EGVYDLARMCtirisfvkGWGPDYS 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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