|
Name |
Accession |
Description |
Interval |
E-value |
| LamB |
smart00281 |
Laminin B domain; |
308-433 |
3.78e-41 |
|
Laminin B domain;
Pssm-ID: 214597 Cd Length: 127 Bit Score: 147.41 E-value: 3.78e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 308 RLDPVYFVAPAKFLGNQQVSYGQSLSFDYRVD--RGGRHPSAHDVILEGAGLRITAPLMplGKTLPCGLTK-TYTFRLNE 384
Cdd:smart00281 1 DNEPVYWVAPEQFLGDKVTSYGGKLRYTLSFDgrRGGTHVSAPDVILEGNGLRISHPAE--GPPLPDELTTvEVRFREEN 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2462509084 385 HPSNNWSPQLSYfEYRRLLRNLTALRIRATYGEYSTG-YIDNVTLISARP 433
Cdd:smart00281 79 WQYYGGRPVTRE-DLMMVLANLTAILIRATYSQQMAGsRLSDVSLEVAVP 127
|
|
| Laminin_B |
pfam00052 |
Laminin B (Domain IV); |
313-443 |
3.76e-37 |
|
Laminin B (Domain IV);
Pssm-ID: 459652 Cd Length: 136 Bit Score: 136.25 E-value: 3.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 313 YFVAPAKFLGNQQVSYGQSLSFDYRVDRGGRHPSAH---DVILEGAGLRITAPLMPLGKTLPcGLTKTYTFRLNEHpsnN 389
Cdd:pfam00052 1 YWSAPEQFLGNKLTSYGGYLTYTVRYEPLPGGGSLNsepDVILEGNGLRLSYSSPDQPPPDP-GQEQTYSVRLHEE---N 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 390 W----SPQLSYFEYRRLLRNLTALRIRATYGEYSTG-YIDNVTLISARP-VSGAPAPWVE 443
Cdd:pfam00052 77 WrdsdGAPVSREDFMMVLANLTAILIRATYSTGSGQvSLSNVSLDSAVPgGSGPPASWVE 136
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
677-1167 |
6.35e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 73.61 E-value: 6.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 677 NQVKIQMdqFMQQLQ-RMEALISKAQggdgvvpdTELEGRMQQAEQAlqdilrdaqisEGASRSLGLQLA----KVRSQE 751
Cdd:pfam15921 254 SQNKIEL--LLQQHQdRIEQLISEHE--------VEITGLTEKASSA-----------RSQANSIQSQLEiiqeQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 752 NSYQSRLDDLKMTVERVRA----LGSQYQNRVRDTHRlitqmQLSLAESEASLGNTNipaSDHYVGPNGF------KSLA 821
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSelreAKRMYEDKIEELEK-----QLVLANSELTEARTE---RDQFSQESGNlddqlqKLLA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 822 QEATRLAESHVESASN-------------MEQLTRETEDYSK--QALSLVRKALHEGVgSGSGSPDGAVVQGLVEKLEKT 886
Cdd:pfam15921 385 DLHKREKELSLEKEQNkrlwdrdtgnsitIDHLRRELDDRNMevQRLEALLKAMKSEC-QGQMERQMAAIQGKNESLEKV 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 887 KSLAQQL--TREATQAEIEADRSYQHSLRlldsvSRLQGVSDQSFQVEEAKR-IKQKADSLSSLVTR------HMDEFKR 957
Cdd:pfam15921 464 SSLTAQLesTKEMLRKVVEELTAKKMTLE-----SSERTVSDLTASLQEKERaIEATNAEITKLRSRvdlklqELQHLKN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 958 TQKNLGNWKEEAQQL-LQngKSGREKSDQLLSRA--NLAKSRAQEALSMGnatfyeveSILKNLREFDLQVDNRKAEAEE 1034
Cdd:pfam15921 539 EGDHLRNVQTECEALkLQ--MAEKDKVIEILRQQieNMTQLVGQHGRTAG--------AMQVEKAQLEKEINDRRLELQE 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1035 aMKRLsyisqkvsdaSDKTQQAERALGSAAADAQRAK----NGAGEALEISSEIEQEIGSLNLEANVTadgalamEKGLA 1110
Cdd:pfam15921 609 -FKIL----------KDKKDAKIRELEARVSDLELEKvklvNAGSERLRAVKDIKQERDQLLNEVKTS-------RNELN 670
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462509084 1111 SLKSEMREVEGELERKELEFDTNMDAVQMVITEAQKVDTRAKNagvtiqdTLNTLDG 1167
Cdd:pfam15921 671 SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRN-------TLKSMEG 720
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
146-190 |
2.49e-12 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 62.76 E-value: 2.49e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2462509084 146 PCNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHMLTDAG 190
Cdd:cd00055 1 PCDCNGHGSLSGQCDpGTGQCECKPNTTGRRCDRCAPGYYGLPSQG 46
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
147-191 |
5.83e-12 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 61.56 E-value: 5.83e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2462509084 147 CNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHMLTDAGC 191
Cdd:smart00180 1 CDCDPGGSASGTCDpDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
202-247 |
1.22e-11 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 60.44 E-value: 1.22e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2462509084 202 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLDGGNPEGC 247
Cdd:pfam00053 1 CDCNPHGSLSDtCDPetGQCLCKPGVTGRHCDRCKPGYYGLPSDPPQGC 49
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
147-186 |
1.38e-11 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 60.44 E-value: 1.38e-11
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2462509084 147 CNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHML 186
Cdd:pfam00053 1 CDCNPHGSLSDTCDpETGQCLCKPGVTGRHCDRCKPGYYGL 41
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
579-628 |
1.60e-10 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 57.36 E-value: 1.60e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2462509084 579 PCQCNNNvdPSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDPLAPN 628
Cdd:cd00055 1 PCDCNGH--GSLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGG 47
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
202-247 |
6.00e-10 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 55.78 E-value: 6.00e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2462509084 202 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYnldGGNPEGC 247
Cdd:smart00180 1 CDCDPGGSASGtCDPdtGQCECKPNVTGRRCDRCAPGYY---GDGPPGC 46
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
580-627 |
7.55e-10 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 55.44 E-value: 7.55e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 2462509084 580 CQCNNNVdpSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDPLAP 627
Cdd:pfam00053 1 CDCNPHG--SLSDTCDPETGQCL-CKPGVTGRHCDRCKPGYYGLPSDP 45
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
202-248 |
4.68e-09 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 53.13 E-value: 4.68e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2462509084 202 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLDgGNPEGCT 248
Cdd:cd00055 2 CDCNGHGSLSGqCDPgtGQCECKPNTTGRRCDRCAPGYYGLP-SQGGGCQ 50
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
710-1179 |
4.88e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 4.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 710 TELEGRMQ----QAEQA-----LQDILRDAQISEGAS--RSLGLQLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNR 778
Cdd:COG1196 196 GELERQLEplerQAEKAeryreLKEELKELEAELLLLklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 779 VRDTHRLITQMQLSLAESEASLGNTNipasdhyvgpNGFKSLAQEATRLAESHVESASNMEQLTRETEDYSKQALSLVRK 858
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLE----------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 859 ALHEgvgsgsgspdGAVVQGLVEKLEKTKSLAQQLTREATQAEIEADRSYQHSLRLLDSVSRLQGVSDQSFQVEEAK--- 935
Cdd:COG1196 346 LEEA----------EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALler 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 936 --RIKQKADSLSSLVTRHMDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVES 1013
Cdd:COG1196 416 leRLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1014 ILKNLREFDLQVDNRKAEAEEAMKRLsyISQKVSDASDKTQQAERALgsAAADAQRAKNGAGEALEISSEIEQEIGSLNL 1093
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1094 EAnVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQKVDTRAKNAGVTIQDTLNTLDGLLHLMG 1173
Cdd:COG1196 572 GR-ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
....*.
gi 2462509084 1174 AHGGEA 1179
Cdd:COG1196 651 LEGEGG 656
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
879-1145 |
5.91e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 879 LVEKLEKTKSLAQQLTREATQAEIEADRsYQHSLRLLDSvsRLQGVSDQ-SFQVEEAKRIKQKADSLSSLVTRHMDEFKR 957
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEE-LEEELEQLRK--ELEELSRQiSALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 958 TQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANlaksRAQEALSMGNATFYEVESILKNLREFDLQVDNRKA----EAE 1033
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAANLRERLEslerRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1034 EAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEanvtadgalamekgLASLK 1113
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE--------------LEELS 900
|
250 260 270
....*....|....*....|....*....|....*
gi 2462509084 1114 SEMREVE---GELERKELEFDTNMDAVQMVITEAQ 1145
Cdd:TIGR02168 901 EELRELEskrSELRRELEELREKLAQLELRLEGLE 935
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
580-624 |
7.86e-08 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 49.62 E-value: 7.86e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 2462509084 580 CQCNnnVDPSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDP 624
Cdd:smart00180 1 CDCD--PGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGDG 42
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
823-1169 |
4.27e-07 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 54.83 E-value: 4.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 823 EATRLAESHV-ESASNMEQLTRETEdysKQALSLVRKALHEGvgsgsgspDGAVVQGLVEKLEKTKSLAQQLTREATQAE 901
Cdd:NF041483 138 ERRQTVESHVnENVAWAEQLRARTE---SQARRLLDESRAEA--------EQALAAARAEAERLAEEARQRLGSEAESAR 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 902 IEAD----RSYQHSLRLLDSVS-RLQGVSDQSFQ-----VEEAKRIKQKADSLSSLVTRHMDEFKR--------TQKNLG 963
Cdd:NF041483 207 AEAEailrRARKDAERLLNAAStQAQEATDHAEQlrsstAAESDQARRQAAELSRAAEQRMQEAEEalrearaeAEKVVA 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 964 NWKEEAQQLLQNGKSGREKsdqllsRANLAKSR----AQEALSMGNATFYEVESILKNLREfdlQVDNRKAEAEEAmKRL 1039
Cdd:NF041483 287 EAKEAAAKQLASAESANEQ------RTRTAKEEiarlVGEATKEAEALKAEAEQALADARA---EAEKLVAEAAEK-ART 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1040 SYISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALE-ISSEIEQEIGSLNLEANVTADGAlameKGLA-------- 1110
Cdd:NF041483 357 VAAEDTAAQLAKAARTAEEVLTKASEDAKATTRAAAEEAErIRREAEAEADRLRGEAADQAEQL----KGAAkddtkeyr 432
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462509084 1111 ----SLKSEMREVEGELERKELEfdtnmdavqmVITEAQKVDTRAKNAGVT-IQDTLNTLDGLL 1169
Cdd:NF041483 433 aktvELQEEARRLRGEAEQLRAE----------AVAEGERIRGEARREAVQqIEEAARTAEELL 486
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
524-572 |
1.47e-06 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 46.19 E-value: 1.47e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2462509084 524 PCPCHNGFSCSVMPETEEVVCNnCPPGVTGARCELCADGYFGDPFGEHG 572
Cdd:cd00055 1 PCDCNGHGSLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGGG 48
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
732-1162 |
2.33e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 52.27 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 732 ISEGASRSLGLQLAK----VRSQENSYQSRLDDLKMTVERVRALGSQYQnrvrDTHRLITqmqlslaESeaslgnTNIPA 807
Cdd:PRK04863 209 ISSAITRSLRDYLLPensgVRKAFQDMEAALRENRMTLEAIRVTQSDRD----LFKHLIT-------ES------TNYVA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 808 SDHYVGPNGFKSLAQEATRL--------------AESHVESASNMEQLTRE----TEDY--SKQALSLVRKAL--HEGVG 865
Cdd:PRK04863 272 ADYMRHANERRVHLEEALELrrelytsrrqlaaeQYRLVEMARELAELNEAesdlEQDYqaASDHLNLVQTALrqQEKIE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 866 SGSGSpdgavVQGLVEKLEKTKSLAQQLTREATQAEIEADRSYQHSLR----LLDSVSRLQGVSDQSFQVEEAKRIKQKA 941
Cdd:PRK04863 352 RYQAD-----LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDElksqLADYQQALDVQQTRAIQYQQAVQALERA 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 942 DSLSSLvtrhmDEFkrTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVE-SILKNL-R 1019
Cdd:PRK04863 427 KQLCGL-----PDL--TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSrSEAWDVaR 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1020 EFDLQVDNRKAEAEeamkRLSYISQKVSDA---SDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEAN 1096
Cdd:PRK04863 500 ELLRRLREQRHLAE----QLQQLRMRLSELeqrLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462509084 1097 VTADGALAMEKGLASLKSEMRevegELERKELEFDTNMDAVQMVitEAQKVDTRAKNAGVT--IQDTL 1162
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQ----RLAARAPAWLAAQDALARL--REQSGEEFEDSQDVTeyMQQLL 637
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
635-667 |
8.29e-06 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 44.27 E-value: 8.29e-06
10 20 30
....*....|....*....|....*....|....
gi 2462509084 635 ACNCNPMGSEPVGC-RSDGTCVCKPGFGGPNCEH 667
Cdd:cd00055 1 PCDCNGHGSLSGQCdPGTGQCECKPNTTGRRCDR 34
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
525-571 |
8.38e-06 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 43.84 E-value: 8.38e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2462509084 525 CPCHNGFSCSVMPETEEVVCNnCPPGVTGARCELCADGYFGDPFGEH 571
Cdd:smart00180 1 CDCDPGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGDGPPGC 46
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
636-667 |
2.74e-05 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 42.73 E-value: 2.74e-05
10 20 30
....*....|....*....|....*....|...
gi 2462509084 636 CNCNPMGSEPVGC-RSDGTCVCKPGFGGPNCEH 667
Cdd:pfam00053 1 CDCNPHGSLSDTCdPETGQCLCKPGVTGRHCDR 33
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
636-667 |
6.04e-05 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 41.53 E-value: 6.04e-05
10 20 30
....*....|....*....|....*....|...
gi 2462509084 636 CNCNPMGSEPVGCRSD-GTCVCKPGFGGPNCEH 667
Cdd:smart00180 1 CDCDPGGSASGTCDPDtGQCECKPNVTGRRCDR 33
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
884-1154 |
3.33e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 45.20 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 884 EKTKSLAQQLTREATQAEIEADR---------------------SYQ-HSLRLLDSVSRLQGVSDQ--SFQVEEAKRIKQ 939
Cdd:NF041483 386 ATTRAAAEEAERIRREAEAEADRlrgeaadqaeqlkgaakddtkEYRaKTVELQEEARRLRGEAEQlrAEAVAEGERIRG 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 940 KAdslSSLVTRHMDEFKRTQKN-LGNWKEEAQQLLQNGKSGREK-SDQLLSRAN---------LAKSRAQ------EALS 1002
Cdd:NF041483 466 EA---RREAVQQIEEAARTAEElLTKAKADADELRSTATAESERvRTEAIERATtlrrqaeetLERTRAEaerlraEAEE 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1003 MGNATFYEVESILKNLR-EFDLQVDNRKAEAEEAMKRLSyisqkvSDASDKTQQAERALGSAAADAQRAKNGAGEALE-- 1079
Cdd:NF041483 543 QAEEVRAAAERAARELReETERAIAARQAEAAEELTRLH------TEAEERLTAAEEALADARAEAERIRREAAEETErl 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1080 ----------ISSEIEQEIGSLNLEANVTADGALAMEKGLA-SLKSemrEVEGELERKELEFDTNMDAVQM-VITEAQKV 1147
Cdd:NF041483 617 rteaaerirtLQAQAEQEAERLRTEAAADASAARAEGENVAvRLRS---EAAAEAERLKSEAQESADRVRAeAAAAAERV 693
|
....*..
gi 2462509084 1148 DTRAKNA 1154
Cdd:NF041483 694 GTEAAEA 700
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
547-572 |
2.68e-03 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 36.95 E-value: 2.68e-03
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
91-149 |
4.57e-03 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 36.18 E-value: 4.57e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462509084 91 CDCNG---KSRQCifdrelHRQTGngfRCLnCNDNTDGIHCEKCKNGFYRHRerdRCLPCNC 149
Cdd:pfam00053 1 CDCNPhgsLSDTC------DPETG---QCL-CKPGVTGRHCDRCKPGYYGLP---SDPPQGC 49
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
91-141 |
5.22e-03 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 36.18 E-value: 5.22e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 2462509084 91 CDCNG---KSRQCifdrelHRQTGngfRCLnCNDNTDGIHCEKCKNGFYRHRER 141
Cdd:cd00055 2 CDCNGhgsLSGQC------DPGTG---QCE-CKPNTTGRRCDRCAPGYYGLPSQ 45
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LamB |
smart00281 |
Laminin B domain; |
308-433 |
3.78e-41 |
|
Laminin B domain;
Pssm-ID: 214597 Cd Length: 127 Bit Score: 147.41 E-value: 3.78e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 308 RLDPVYFVAPAKFLGNQQVSYGQSLSFDYRVD--RGGRHPSAHDVILEGAGLRITAPLMplGKTLPCGLTK-TYTFRLNE 384
Cdd:smart00281 1 DNEPVYWVAPEQFLGDKVTSYGGKLRYTLSFDgrRGGTHVSAPDVILEGNGLRISHPAE--GPPLPDELTTvEVRFREEN 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2462509084 385 HPSNNWSPQLSYfEYRRLLRNLTALRIRATYGEYSTG-YIDNVTLISARP 433
Cdd:smart00281 79 WQYYGGRPVTRE-DLMMVLANLTAILIRATYSQQMAGsRLSDVSLEVAVP 127
|
|
| Laminin_B |
pfam00052 |
Laminin B (Domain IV); |
313-443 |
3.76e-37 |
|
Laminin B (Domain IV);
Pssm-ID: 459652 Cd Length: 136 Bit Score: 136.25 E-value: 3.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 313 YFVAPAKFLGNQQVSYGQSLSFDYRVDRGGRHPSAH---DVILEGAGLRITAPLMPLGKTLPcGLTKTYTFRLNEHpsnN 389
Cdd:pfam00052 1 YWSAPEQFLGNKLTSYGGYLTYTVRYEPLPGGGSLNsepDVILEGNGLRLSYSSPDQPPPDP-GQEQTYSVRLHEE---N 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 390 W----SPQLSYFEYRRLLRNLTALRIRATYGEYSTG-YIDNVTLISARP-VSGAPAPWVE 443
Cdd:pfam00052 77 WrdsdGAPVSREDFMMVLANLTAILIRATYSTGSGQvSLSNVSLDSAVPgGSGPPASWVE 136
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
677-1167 |
6.35e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 73.61 E-value: 6.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 677 NQVKIQMdqFMQQLQ-RMEALISKAQggdgvvpdTELEGRMQQAEQAlqdilrdaqisEGASRSLGLQLA----KVRSQE 751
Cdd:pfam15921 254 SQNKIEL--LLQQHQdRIEQLISEHE--------VEITGLTEKASSA-----------RSQANSIQSQLEiiqeQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 752 NSYQSRLDDLKMTVERVRA----LGSQYQNRVRDTHRlitqmQLSLAESEASLGNTNipaSDHYVGPNGF------KSLA 821
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSelreAKRMYEDKIEELEK-----QLVLANSELTEARTE---RDQFSQESGNlddqlqKLLA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 822 QEATRLAESHVESASN-------------MEQLTRETEDYSK--QALSLVRKALHEGVgSGSGSPDGAVVQGLVEKLEKT 886
Cdd:pfam15921 385 DLHKREKELSLEKEQNkrlwdrdtgnsitIDHLRRELDDRNMevQRLEALLKAMKSEC-QGQMERQMAAIQGKNESLEKV 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 887 KSLAQQL--TREATQAEIEADRSYQHSLRlldsvSRLQGVSDQSFQVEEAKR-IKQKADSLSSLVTR------HMDEFKR 957
Cdd:pfam15921 464 SSLTAQLesTKEMLRKVVEELTAKKMTLE-----SSERTVSDLTASLQEKERaIEATNAEITKLRSRvdlklqELQHLKN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 958 TQKNLGNWKEEAQQL-LQngKSGREKSDQLLSRA--NLAKSRAQEALSMGnatfyeveSILKNLREFDLQVDNRKAEAEE 1034
Cdd:pfam15921 539 EGDHLRNVQTECEALkLQ--MAEKDKVIEILRQQieNMTQLVGQHGRTAG--------AMQVEKAQLEKEINDRRLELQE 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1035 aMKRLsyisqkvsdaSDKTQQAERALGSAAADAQRAK----NGAGEALEISSEIEQEIGSLNLEANVTadgalamEKGLA 1110
Cdd:pfam15921 609 -FKIL----------KDKKDAKIRELEARVSDLELEKvklvNAGSERLRAVKDIKQERDQLLNEVKTS-------RNELN 670
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462509084 1111 SLKSEMREVEGELERKELEFDTNMDAVQMVITEAQKVDTRAKNagvtiqdTLNTLDG 1167
Cdd:pfam15921 671 SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRN-------TLKSMEG 720
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
146-190 |
2.49e-12 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 62.76 E-value: 2.49e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2462509084 146 PCNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHMLTDAG 190
Cdd:cd00055 1 PCDCNGHGSLSGQCDpGTGQCECKPNTTGRRCDRCAPGYYGLPSQG 46
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
147-191 |
5.83e-12 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 61.56 E-value: 5.83e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2462509084 147 CNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHMLTDAGC 191
Cdd:smart00180 1 CDCDPGGSASGTCDpDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
202-247 |
1.22e-11 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 60.44 E-value: 1.22e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2462509084 202 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLDGGNPEGC 247
Cdd:pfam00053 1 CDCNPHGSLSDtCDPetGQCLCKPGVTGRHCDRCKPGYYGLPSDPPQGC 49
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
147-186 |
1.38e-11 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 60.44 E-value: 1.38e-11
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2462509084 147 CNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHML 186
Cdd:pfam00053 1 CDCNPHGSLSDTCDpETGQCLCKPGVTGRHCDRCKPGYYGL 41
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
579-628 |
1.60e-10 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 57.36 E-value: 1.60e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2462509084 579 PCQCNNNvdPSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDPLAPN 628
Cdd:cd00055 1 PCDCNGH--GSLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGG 47
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
202-247 |
6.00e-10 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 55.78 E-value: 6.00e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2462509084 202 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYnldGGNPEGC 247
Cdd:smart00180 1 CDCDPGGSASGtCDPdtGQCECKPNVTGRRCDRCAPGYY---GDGPPGC 46
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
677-1246 |
6.62e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.98 E-value: 6.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 677 NQVKIQMDQFMQQLQRMEALISKAQggdgvvpdTELEGRMQQAEQALQdilrdaqiseGASRSLglqlAKVRSQENSYQS 756
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLKAMK--------SECQGQMERQMAAIQ----------GKNESL----EKVSSLTAQLES 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 757 RLDDLKMTVERVRALGSQYQNrvrdTHRLITQMQLSLAESEASLGNTNIPA----SDHYVGPNGFKSLAQEATRLaeSHV 832
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLES----SERTVSDLTASLQEKERAIEATNAEItklrSRVDLKLQELQHLKNEGDHL--RNV 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 833 ESASNMEQLTRETEDYSKQALSLVRKALHEGVGSgSGSPDGAVvqgLVEKLEKTKSLAQQlTREATQAEIEADRSyQHSL 912
Cdd:pfam15921 547 QTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ-HGRTAGAM---QVEKAQLEKEINDR-RLELQEFKILKDKK-DAKI 620
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 913 RLLDS------VSRLQGVSDQSFQVEEAKRIKQKADSLsslvtrhMDEFKRTQKNLGNWKEEAQQLLQNGksgREKSDQL 986
Cdd:pfam15921 621 RELEArvsdleLEKVKLVNAGSERLRAVKDIKQERDQL-------LNEVKTSRNELNSLSEDYEVLKRNF---RNKSEEM 690
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 987 LSRANLAKSRAQEALSmgnatfyEVESILKNLREFDlQVDNRKAEAEEAM-KRLSYISQKVSDASDKTQQAERALGSAAA 1065
Cdd:pfam15921 691 ETTTNKLKMQLKSAQS-------ELEQTRNTLKSME-GSDGHAMKVAMGMqKQITAKRGQIDALQSKIQFLEEAMTNANK 762
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1066 DAQRAKngagealEISSEIEQEIGSLNLEANvtadgalAMEKGLASLKSEMRevegELERKELEFDTNMDAVQMVITEAQ 1145
Cdd:pfam15921 763 EKHFLK-------EEKNKLSQELSTVATEKN-------KMAGELEVLRSQER----RLKEKVANMEVALDKASLQFAECQ 824
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1146 KVDTRAKNAGVTIQdTLNTLDgLLHLMG-AHGGEAPTDPALDGPAGTTQinklAYLNLrPPTQEltqckkTAStpcdFIS 1224
Cdd:pfam15921 825 DIIQRQEQESVRLK-LQHTLD-VKELQGpGYTSNSSMKPRLLQPASFTR----THSNV-PSSQS------TAS----FLS 887
|
570 580
....*....|....*....|..
gi 2462509084 1225 DQSALLAHWLPQPMKfSLKTLL 1246
Cdd:pfam15921 888 HHSRKTNALKEDPTR-DLKQLL 908
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
580-627 |
7.55e-10 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 55.44 E-value: 7.55e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 2462509084 580 CQCNNNVdpSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDPLAP 627
Cdd:pfam00053 1 CDCNPHG--SLSDTCDPETGQCL-CKPGVTGRHCDRCKPGYYGLPSDP 45
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
202-248 |
4.68e-09 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 53.13 E-value: 4.68e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2462509084 202 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLDgGNPEGCT 248
Cdd:cd00055 2 CDCNGHGSLSGqCDPgtGQCECKPNTTGRRCDRCAPGYYGLP-SQGGGCQ 50
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
710-1179 |
4.88e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 4.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 710 TELEGRMQ----QAEQA-----LQDILRDAQISEGAS--RSLGLQLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNR 778
Cdd:COG1196 196 GELERQLEplerQAEKAeryreLKEELKELEAELLLLklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 779 VRDTHRLITQMQLSLAESEASLGNTNipasdhyvgpNGFKSLAQEATRLAESHVESASNMEQLTRETEDYSKQALSLVRK 858
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLE----------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 859 ALHEgvgsgsgspdGAVVQGLVEKLEKTKSLAQQLTREATQAEIEADRSYQHSLRLLDSVSRLQGVSDQSFQVEEAK--- 935
Cdd:COG1196 346 LEEA----------EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALler 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 936 --RIKQKADSLSSLVTRHMDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVES 1013
Cdd:COG1196 416 leRLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1014 ILKNLREFDLQVDNRKAEAEEAMKRLsyISQKVSDASDKTQQAERALgsAAADAQRAKNGAGEALEISSEIEQEIGSLNL 1093
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1094 EAnVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQKVDTRAKNAGVTIQDTLNTLDGLLHLMG 1173
Cdd:COG1196 572 GR-ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
....*.
gi 2462509084 1174 AHGGEA 1179
Cdd:COG1196 651 LEGEGG 656
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
879-1145 |
5.91e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 879 LVEKLEKTKSLAQQLTREATQAEIEADRsYQHSLRLLDSvsRLQGVSDQ-SFQVEEAKRIKQKADSLSSLVTRHMDEFKR 957
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEE-LEEELEQLRK--ELEELSRQiSALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 958 TQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANlaksRAQEALSMGNATFYEVESILKNLREFDLQVDNRKA----EAE 1033
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAANLRERLEslerRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1034 EAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEanvtadgalamekgLASLK 1113
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE--------------LEELS 900
|
250 260 270
....*....|....*....|....*....|....*
gi 2462509084 1114 SEMREVE---GELERKELEFDTNMDAVQMVITEAQ 1145
Cdd:TIGR02168 901 EELRELEskrSELRRELEELREKLAQLELRLEGLE 935
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
580-624 |
7.86e-08 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 49.62 E-value: 7.86e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 2462509084 580 CQCNnnVDPSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDP 624
Cdd:smart00180 1 CDCD--PGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGDG 42
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
711-1162 |
1.28e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 711 ELEGRMQQAEQALQDILRDAQISEGASRSLGL--QLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNRVRDthrlITQ 788
Cdd:COG4717 99 ELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEELRELEEELEELEAE----LAE 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 789 MQLSLAESEASLGNTNipasdhyvgPNGFKSLAQEATRLAESHVESASNMEQLTRETEDYSKQALSLVRKALHEgvgsgs 868
Cdd:COG4717 175 LQEELEELLEQLSLAT---------EEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA------ 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 869 gspdgavvqglvEKLEKTKSLAQQLTREATQAEIEADrsyqhSLRLLDSVSRLQGVsdqsfqveeakrikqkADSLSSLV 948
Cdd:COG4717 240 ------------ALEERLKEARLLLLIAAALLALLGL-----GGSLLSLILTIAGV----------------LFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 949 TRHMDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSR----ANLAKSRAQEALSMGNATFYEVESILKNLREFDLQ 1024
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAlglpPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1025 V---------DNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEAleissEIEQEIGSLNLEA 1095
Cdd:COG4717 367 EleqeiaallAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE-----ELEEELEELEEEL 441
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462509084 1096 NVTADGALAMEKGLASLKSEMREVE--GELERKELEFDTnmdaVQMVITEAQKVDTRAKNAGVTIQDTL 1162
Cdd:COG4717 442 EELEEELEELREELAELEAELEQLEedGELAELLQELEE----LKAELRELAEEWAALKLALELLEEAR 506
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
815-1102 |
1.36e-07 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 55.73 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 815 NGFKSL--AQEATRLAESHVESASNMEQLTRETEDYSKQaLSLVRKALHEGVGSGSGSpdgavVQGLVEKLEKTKSLAQQ 892
Cdd:COG5185 347 QGQESLteNLEAIKEEIENIVGEVELSKSSEELDSFKDT-IESTKESLDEIPQNQRGY-----AQEILATLEDTLKAADR 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 893 lTREATQAEIE-ADRSYQHSLRLLDSVSRLQGVSDQSFQVEEAKRIKQKADSLSSlvtrhmdefkRTQKNLGNWKEEAQQ 971
Cdd:COG5185 421 -QIEELQRQIEqATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINR----------SVRSKKEDLNEELTQ 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 972 LLQNGKSGREKSDQLlsRANLAKSraqealsmgnatfyeVESILKNLREFDLQVDNRKAEAEEAMKRLsyISQKVSDASD 1051
Cdd:COG5185 490 IESRVSTLKATLEKL--RAKLERQ---------------LEGVRSKLDQVAESLKDFMRARGYAHILA--LENLIPASEL 550
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2462509084 1052 KTQQAERALGSAAADAQRAKNGAGEALEIsseieqeIGSLNLEANVTADGA 1102
Cdd:COG5185 551 IQASNAKTDGQAANLRTAVIDELTQYLST-------IESQQAREDPIPDQA 594
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
711-1099 |
3.46e-07 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 54.14 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 711 ELEGRMQQAEQALQDILRDAQISEgasRSLGLQLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNRVRDTHRLITQMQ 790
Cdd:COG4372 17 GLRPKTGILIAALSEQLRKALFEL---DKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 791 LSLAESEASLgntnipasdhyvgpngfKSLAQEATRLAEShvesasnMEQLTREtedysKQALSLVRKALHEGVgsgsgs 870
Cdd:COG4372 94 AELAQAQEEL-----------------ESLQEEAEELQEE-------LEELQKE-----RQDLEQQRKQLEAQI------ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 871 pdGAVVQGLVEKLEKTKSLAQQLTReaTQAEIEADRSYQHSLRLLDSVSRLQGVSDQSFQVEEAKRIKQKADSLSSLVTR 950
Cdd:COG4372 139 --AELQSEIAEREEELKELEEQLES--LQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPR 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 951 HMDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLREFD----LQVD 1026
Cdd:COG4372 215 ELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEaleeAALE 294
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462509084 1027 NRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAAD--AQRAKNGAGEALEISSEIEQEIGSLNLEANVTA 1099
Cdd:COG4372 295 LKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAIllAELADLLQLLLVGLLDNDVLELLSKGAEAGVAD 369
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
823-1169 |
4.27e-07 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 54.83 E-value: 4.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 823 EATRLAESHV-ESASNMEQLTRETEdysKQALSLVRKALHEGvgsgsgspDGAVVQGLVEKLEKTKSLAQQLTREATQAE 901
Cdd:NF041483 138 ERRQTVESHVnENVAWAEQLRARTE---SQARRLLDESRAEA--------EQALAAARAEAERLAEEARQRLGSEAESAR 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 902 IEAD----RSYQHSLRLLDSVS-RLQGVSDQSFQ-----VEEAKRIKQKADSLSSLVTRHMDEFKR--------TQKNLG 963
Cdd:NF041483 207 AEAEailrRARKDAERLLNAAStQAQEATDHAEQlrsstAAESDQARRQAAELSRAAEQRMQEAEEalrearaeAEKVVA 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 964 NWKEEAQQLLQNGKSGREKsdqllsRANLAKSR----AQEALSMGNATFYEVESILKNLREfdlQVDNRKAEAEEAmKRL 1039
Cdd:NF041483 287 EAKEAAAKQLASAESANEQ------RTRTAKEEiarlVGEATKEAEALKAEAEQALADARA---EAEKLVAEAAEK-ART 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1040 SYISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALE-ISSEIEQEIGSLNLEANVTADGAlameKGLA-------- 1110
Cdd:NF041483 357 VAAEDTAAQLAKAARTAEEVLTKASEDAKATTRAAAEEAErIRREAEAEADRLRGEAADQAEQL----KGAAkddtkeyr 432
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462509084 1111 ----SLKSEMREVEGELERKELEfdtnmdavqmVITEAQKVDTRAKNAGVT-IQDTLNTLDGLL 1169
Cdd:NF041483 433 aktvELQEEARRLRGEAEQLRAE----------AVAEGERIRGEARREAVQqIEEAARTAEELL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
879-1152 |
5.33e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 5.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 879 LVEKLEKTKSLAQQLTRE---------ATQAEIEADRSYQHSL--RLLDSVSRLQG-VSDQSFQVEEAKRIKQKADSLSs 946
Cdd:TIGR02168 237 LREELEELQEELKEAEEEleeltaelqELEEKLEELRLEVSELeeEIEELQKELYAlANEISRLEQQKQILRERLANLE- 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 947 lvtrhmDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEAlsmgNATFYEVESILKNLREFDLQVD 1026
Cdd:TIGR02168 316 ------RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL----EAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1027 NRKAEAEE----AMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAkngagEALEISSEIEQEigslnleanvtadga 1102
Cdd:TIGR02168 386 SKVAQLELqiasLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-----ELKELQAELEEL--------------- 445
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1103 lamEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQKVDTRAK 1152
Cdd:TIGR02168 446 ---EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
524-572 |
1.47e-06 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 46.19 E-value: 1.47e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2462509084 524 PCPCHNGFSCSVMPETEEVVCNnCPPGVTGARCELCADGYFGDPFGEHG 572
Cdd:cd00055 1 PCDCNGHGSLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGGG 48
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
914-1125 |
1.82e-06 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 50.06 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 914 LLDSVSRL--QGVSDQSFQVEEAKRIKQKAdslsslvTRHMdefkrtQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRAN 991
Cdd:pfam04012 1 IFKRLGRLvrANIHEGLDKAEDPEKMLEQA-------IRDM------QSELVKARQALAQTIARQKQLERRLEQQTEQAK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 992 LAKSRAQEALSMGN-----ATFYEVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQ----QAERALGS 1062
Cdd:pfam04012 68 KLEEKAQAALTKGNeelarEALAEKKSLEKQAEALETQLAQQRSAVEQLRKQLAALETKIQQLKAKKNllkaRLKAAKAQ 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462509084 1063 AAADAQRAKNGAGEALEISSEIEQEIgsLNLEANVTADGALAMEKGL----ASLKSEMREVEGELER 1125
Cdd:pfam04012 148 EAVQTSLGSLSTSSATDSFERIEEKI--EEREARADAAAELASAVDLdaklEQAGIQMEVSEDVLAR 212
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
732-1162 |
2.33e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 52.27 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 732 ISEGASRSLGLQLAK----VRSQENSYQSRLDDLKMTVERVRALGSQYQnrvrDTHRLITqmqlslaESeaslgnTNIPA 807
Cdd:PRK04863 209 ISSAITRSLRDYLLPensgVRKAFQDMEAALRENRMTLEAIRVTQSDRD----LFKHLIT-------ES------TNYVA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 808 SDHYVGPNGFKSLAQEATRL--------------AESHVESASNMEQLTRE----TEDY--SKQALSLVRKAL--HEGVG 865
Cdd:PRK04863 272 ADYMRHANERRVHLEEALELrrelytsrrqlaaeQYRLVEMARELAELNEAesdlEQDYqaASDHLNLVQTALrqQEKIE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 866 SGSGSpdgavVQGLVEKLEKTKSLAQQLTREATQAEIEADRSYQHSLR----LLDSVSRLQGVSDQSFQVEEAKRIKQKA 941
Cdd:PRK04863 352 RYQAD-----LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDElksqLADYQQALDVQQTRAIQYQQAVQALERA 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 942 DSLSSLvtrhmDEFkrTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVE-SILKNL-R 1019
Cdd:PRK04863 427 KQLCGL-----PDL--TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSrSEAWDVaR 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1020 EFDLQVDNRKAEAEeamkRLSYISQKVSDA---SDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEAN 1096
Cdd:PRK04863 500 ELLRRLREQRHLAE----QLQQLRMRLSELeqrLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462509084 1097 VTADGALAMEKGLASLKSEMRevegELERKELEFDTNMDAVQMVitEAQKVDTRAKNAGVT--IQDTL 1162
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQ----RLAARAPAWLAAQDALARL--REQSGEEFEDSQDVTeyMQQLL 637
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
711-1059 |
2.59e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 711 ELEGRMQQAEQALQDiLRDAQisegasRSLGLQLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNRVRDTHRLITQMQ 790
Cdd:TIGR02168 688 ELEEKIAELEKALAE-LRKEL------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 791 LSLAESEAslgntnipasdhyvgpngfkSLAQEATRLAESHVESASNMEQLTRETEDYS--KQALSLVRKALHEgvgsgs 868
Cdd:TIGR02168 761 AEIEELEE--------------------RLEEAEEELAEAEAEIEELEAQIEQLKEELKalREALDELRAELTL------ 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 869 gspdgavvqgLVEKLEKTKSLAQQLTREATQAEIEADRSYQHSLRLLDSVSRLQGV--------SDQSFQVEEAKRIKQK 940
Cdd:TIGR02168 815 ----------LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEieeleeliEELESELEALLNERAS 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 941 ADSLSSLVTRHMDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLRE 1020
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE 964
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462509084 1021 FDLQVDNRK-------------------AEAEEAMKRLSYISQKVSDASDKTQQAERA 1059
Cdd:TIGR02168 965 DDEEEARRRlkrlenkikelgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
635-667 |
8.29e-06 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 44.27 E-value: 8.29e-06
10 20 30
....*....|....*....|....*....|....
gi 2462509084 635 ACNCNPMGSEPVGC-RSDGTCVCKPGFGGPNCEH 667
Cdd:cd00055 1 PCDCNGHGSLSGQCdPGTGQCECKPNTTGRRCDR 34
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
525-571 |
8.38e-06 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 43.84 E-value: 8.38e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2462509084 525 CPCHNGFSCSVMPETEEVVCNnCPPGVTGARCELCADGYFGDPFGEH 571
Cdd:smart00180 1 CDCDPGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGDGPPGC 46
|
|
| TNFRSF4 |
cd13406 |
Tumor necrosis factor receptor superfamily member 4 (TNFRSF4), also known as CD134 or OXO40; ... |
500-580 |
1.27e-05 |
|
Tumor necrosis factor receptor superfamily member 4 (TNFRSF4), also known as CD134 or OXO40; TNFRSF4 (also known as OX40, ACT35, CD134, IMD16, TXGP1L) activates NF-kappaB through its interaction with adaptor proteins TRAF2 and TRAF5. It also promotes the expression of apoptosis inhibitors BCL2 and BCL2lL1/BCL2-XL, and thus suppresses apoptosis. It is primarily expressed on activated CD4+ and CD8+ T cells, where it is transiently expressed and upregulated on the most recently antigen-activated T cells within inflammatory lesions. This makes it an attractive target to modulate immune responses, i.e. TNFRSF4 (OX40) blocking agents to inhibit adverse inflammation or agonists to enhance immune responses. An artificially created biologic fusion protein, OX40-immunoglobulin (OX40-Ig), prevents OX40 from reaching the T-cell receptors, thus reducing the T-cell response. Some single nucleotide polymorphisms (SNPs) of its natural ligand OX40 ligand (OX40L, CD252), which is also found on activated T cells, have been associated with systemic lupus erythematosus.
Pssm-ID: 276911 [Multi-domain] Cd Length: 142 Bit Score: 46.24 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 500 NPDIECADCPIGFYNDPHDPRSCKPCPCHNGFSCSVMPE----TEEVVCnNCPPGVT-------GARCELCADGYFGDpf 568
Cdd:cd13406 31 TQDTVCSPCEPGFYNEAVNYEPCKPCTQCNQRSGSEEKQkctkTSDTVC-RCRPGTQpldsykpGVDCVPCPPGHFSR-- 107
|
90
....*....|..
gi 2462509084 569 GEHGPVRPCQPC 580
Cdd:cd13406 108 GDNQACKPWTNC 119
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
677-1130 |
1.32e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 677 NQVKIQMDQFMQQLQRMEALISkAQGGDGVvpdTELEGRMQQAEQALQDILRDAQISEGASRSLGLQLAKVRSQENSYQS 756
Cdd:COG4913 312 ERLEARLDALREELDELEAQIR-GNGGDRL---EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 757 RLDDLKMTVERVRAlgsQYQNRVRDTHRLITQMQLSLAESE---ASL--GNTNIPASDHYVgpngfKSLAQEATRLAESH 831
Cdd:COG4913 388 EAAALLEALEEELE---ALEEALAEAEAALRDLRRELRELEaeiASLerRKSNIPARLLAL-----RDALAEALGLDEAE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 832 V----------------ESAsnMEQLTR--------ETEDYsKQALSLVRkALH-------EGVGSGSGSPDGAVV--QG 878
Cdd:COG4913 460 LpfvgelievrpeeerwRGA--IERVLGgfaltllvPPEHY-AAALRWVN-RLHlrgrlvyERVRTGLPDPERPRLdpDS 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 879 LVEKLEKTKSLAqqltREATQAEIEADRSYqhslRLLDSVSRLQGVS-------------------DQSFQVEE------ 933
Cdd:COG4913 536 LAGKLDFKPHPF----RAWLEAELGRRFDY----VCVDSPEELRRHPraitragqvkgngtrhekdDRRRIRSRyvlgfd 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 934 -AKRIKQKADSLSSLvTRHMDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQ-----EALSMGNAT 1007
Cdd:COG4913 608 nRAKLAALEAELAEL-EEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAEleaelERLDASSDD 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1008 fyevesiLKNLREfdlQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAknGAGEALEISSEIEQE 1087
Cdd:COG4913 687 -------LAALEE---QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA--EDLARLELRALLEER 754
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 2462509084 1088 IGSLNLEAnVTADGALAMEKGLASLKSEMREVEGELERKELEF 1130
Cdd:COG4913 755 FAAALGDA-VERELRENLEERIDALRARLNRAEEELERAMRAF 796
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
818-1128 |
1.38e-05 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 49.60 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 818 KSLAQEATRLA---ESHVESASNMEQLTRETEDYSKQA---LSLvRKALHEGVGSGSGSPDGAVVQGLVEklektksLAQ 891
Cdd:pfam13779 406 RALIEQRRRLAldrENRPRVARALDALTLAPEEFGPDAgvyLGL-RSALARLELARSDEALDEVADLLWE-------LAL 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 892 QLT-REATQAEIEADRSYQhslRLLDSVSRlqGVSDqsfqvEEakrIKQKADSLSSLVTRHMDEFKRTQKNLGNwkEEAQ 970
Cdd:pfam13779 478 RIEdGDLSDAERRLRAAQE---RLSEALER--GASD-----EE---IAKLMQELREALDDYMQALAEQAQQNPQ--DLQQ 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 971 QLLQNGKSGREKS-DQLLSR-ANLAKS----RAQEALSmgnatfyEVESILKNLR--EFDLQVDNRKAEAEEAMKRLSYI 1042
Cdd:pfam13779 543 PDDPNAQEMTQQDlQRMLDRiEELARSgrraEAQQMLS-------QLQQMLENLQagQPQQQQQQGQSEMQQAMDELGDL 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1043 SQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEANVTADGAL-----AMEKGLASLKSEMR 1117
Cdd:pfam13779 616 LREQQQLLDETFRQLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAQMPPQGGAEALGDLaerqqALRRRLEELQDELK 695
|
330
....*....|.
gi 2462509084 1118 EVEGELERKEL 1128
Cdd:pfam13779 696 ELGGKEPGQAL 706
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
636-667 |
2.74e-05 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 42.73 E-value: 2.74e-05
10 20 30
....*....|....*....|....*....|...
gi 2462509084 636 CNCNPMGSEPVGC-RSDGTCVCKPGFGGPNCEH 667
Cdd:pfam00053 1 CDCNPHGSLSDTCdPETGQCLCKPGVTGRHCDR 33
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
711-1129 |
3.05e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 3.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 711 ELEGRMQQAEQALQDILRdaQISEGAS--RSLGLQLAKVRSQensYQsRLDDLKMTVERVRALGSQYQNRVRDTHRLITQ 788
Cdd:PRK03918 190 NIEELIKEKEKELEEVLR--EINEISSelPELREELEKLEKE---VK-ELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 789 MQLSLAESEASLgntnipasdhyvgpngfKSLAQEATRLAESHvESASNMEQLTRETEDYsKQALSLVRKALhegvgsGS 868
Cdd:PRK03918 264 LEERIEELKKEI-----------------EELEEKVKELKELK-EKAEEYIKLSEFYEEY-LDELREIEKRL------SR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 869 GSPDGAVVQGLVEKLEKTKSLAQQLTREATQ-----AEIEAD-RSYQHSLRLLDSVSRLQgvsdQSFQVEEAKRIKQKAD 942
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKElekrlEELEERhELYEEAKAKKEELERLK----KRLTGLTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 943 SLSSLVTRHMDEFKRTQKNLGNWKEEAQQL------LQNGKS-----GREKSDQllSRANL-AKSRAqealsmgnatfyE 1010
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELkkaieeLKKAKGkcpvcGRELTEE--HRKELlEEYTA------------E 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1011 VESILKNLREFDLQVDNRKAEAEEAMKRLSYISQ--KVSDASDKTQQAERALGS-AAADAQRAKNGAGEALEISSEIEQE 1087
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLKGE 540
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 2462509084 1088 IGSLNLEANVTADgalaMEKGLASLKSEMREVEGELER--KELE 1129
Cdd:PRK03918 541 IKSLKKELEKLEE----LKKKLAELEKKLDELEEELAEllKELE 580
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
953-1124 |
3.93e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.59 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 953 DEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLREFDLQVDNRKAEA 1032
Cdd:COG4372 45 EELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKER 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1033 EEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAgEALEIS------SEIEQEIGSLNLEANVTADGALAME 1106
Cdd:COG4372 125 QDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEEL-AALEQElqalseAEAEQALDELLKEANRNAEKEEELA 203
|
170
....*....|....*...
gi 2462509084 1107 KGLASLKSEMREVEGELE 1124
Cdd:COG4372 204 EAEKLIESLPRELAEELL 221
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
711-1150 |
4.58e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 4.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 711 ELEGRMQQAEQALQDILRDAQISEGASRSLGLQLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNRVRDTHRLITQMQ 790
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 791 LSLAESEASLGNTNIPASDHYVGPNGFKSLAQEATRLAESHVESASNMEQLTRETEDYSKQALSLVRKALHEGVgsgsgS 870
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL-----A 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 871 PDGAVVQGLVEKLEKT------KSLAQQLTREATQAE--IEADRSyqhslRLLDSVSRLQGVSDQSFQVEEAKRIKQKAD 942
Cdd:COG1196 524 GAVAVLIGVEAAYEAAleaalaAALQNIVVEDDEVAAaaIEYLKA-----AKAGRATFLPLDKIRARAALAAALARGAIG 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 943 SLSSLVTRHMDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRAnLAKSRAQEALSMGNATFYEVESILKNLREFd 1022
Cdd:COG1196 599 AAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL-REVTLEGEGGSAGGSLTGGSRRELLAALLE- 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1023 lqvdnRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNgAGEALEISSEIEQEIGSLNLEANVTADGA 1102
Cdd:COG1196 677 -----AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL-EEEALEEQLEAEREELLEELLEEEELLEE 750
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 2462509084 1103 LAMEKGLASLKSEmrEVEGELERKELEFDT----NMDAvqmvITEAQKVDTR 1150
Cdd:COG1196 751 EALEELPEPPDLE--ELERELERLEREIEAlgpvNLLA----IEEYEELEER 796
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
872-1163 |
5.34e-05 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 47.30 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 872 DGAVVQGLVEKLEKTKSLAQQLTreaTQAEIEADrsyqhslrllDSVSRLQGVSDQSFQ-VEEAKRIKQKADslsslvtr 950
Cdd:pfam05262 179 DKKVVEALREDNEKGVNFRRDMT---DLKERESQ----------EDAKRAQQLKEELDKkQIDADKAQQKAD-------- 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 951 hmdefkRTQKNLGNWKEEAQQLLQNGKSGREKSDqllsranlaKSRAQEALSMGNATFYEVESILKNLREFDLQVDNRKA 1030
Cdd:pfam05262 238 ------FAQDNADKQRDEVRQKQQEAKNLPKPAD---------TSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKD 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1031 EAEEAMKRLSYISQKvsDASDKTQQAERALGSAAADAQRAKNgAGEAlEISSEIEQEIGSLN--LEANVTADGALAMEKG 1108
Cdd:pfam05262 303 HKAFDLKQESKASEK--EAEDKELEAQKKREPVAEDLQKTKP-QVEA-QPTSLNEDAIDSSNpvYGLKVVDPITNLSELV 378
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462509084 1109 LASLKSEMREVEGELE--RKELEFDTNMDAVQMVITEA----QKVDTRAKNAGVTIQDTLN 1163
Cdd:pfam05262 379 LIDLKTEVRLRESAQQtiRRRGLYEREKDLVAIAITSGnaklQLVDIDLKNLEVIKESNFE 439
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
636-667 |
6.04e-05 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 41.53 E-value: 6.04e-05
10 20 30
....*....|....*....|....*....|...
gi 2462509084 636 CNCNPMGSEPVGCRSD-GTCVCKPGFGGPNCEH 667
Cdd:smart00180 1 CDCDPGGSASGTCDPDtGQCECKPNVTGRRCDR 33
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
677-1156 |
1.07e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 677 NQVKIQMDQFMQQLQRMEALISKAQggdgvvpDTELEGRMQQAEQALQDILRDAQIS----EGASRSLGLQLAKVRSQEN 752
Cdd:TIGR00618 362 EVATSIREISCQQHTLTQHIHTLQQ-------QKTTLTQKLQSLCKELDILQREQATidtrTSAFRDLQGQLAHAKKQQE 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 753 SYQSRLDDLKMTVE------------------RVRALGSQYQN------RVRDTHRLITQMQLSLAESEASL-GNTNIPA 807
Cdd:TIGR00618 435 LQQRYAELCAAAITctaqceklekihlqesaqSLKEREQQLQTkeqihlQETRKKAVVLARLLELQEEPCPLcGSCIHPN 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 808 SDHYV----GPN------GFKSLAQEATRLAESHVESASNMEQLTR-----ETEDYSKQALSLVRKALHEGVgSGSGSPD 872
Cdd:TIGR00618 515 PARQDidnpGPLtrrmqrGEQTYAQLETSEEDVYHQLTSERKQRASlkeqmQEIQQSFSILTQCDNRSKEDI-PNLQNIT 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 873 GAVVQGLVEKLEKTKSLAQQLTREATQAEIEAD--------RSYQHSLRL-LDSVSRLQGVSDQSFQVEEAKRIKQKADS 943
Cdd:TIGR00618 594 VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDlqdvrlhlQQCSQELALkLTALHALQLTLTQERVREHALSIRVLPKE 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 944 LSSLVTRHMDEFKRTQKNLGNWKEEAQQ---LLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFyeVESILKNLRE 1020
Cdd:TIGR00618 674 LLASRQLALQKMQSEKEQLTYWKEMLAQcqtLLRELETHIEEYDREFNEIENASSSLGSDLAAREDAL--NQSLKELMHQ 751
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1021 FDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKngagealEISSEIEQEIGSLNLEANVTAD 1100
Cdd:TIGR00618 752 ARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK-------TLEAEIGQEIPSDEDILNLQCE 824
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462509084 1101 galAMEKGLASLKSEMRE---VEGELERKELEFDTNMDAVQMVITEAQKVDTRAKNAGV 1156
Cdd:TIGR00618 825 ---TLVQEEEQFLSRLEEksaTLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNG 880
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
876-1102 |
2.32e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 876 VQGLVEKLEKTKSLAQQLTRE--ATQAEIEAD--------RSYQHSLRLLDSVSRLqgVSDQSFQ--VEEAKRIKQKADS 943
Cdd:COG3883 53 YNELQAELEALQAEIDKLQAEiaEAEAEIEERreelgeraRALYRSGGSVSYLDVL--LGSESFSdfLDRLSALSKIADA 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 944 LSSLvtrhMDEFKRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSmgnatfyEVESILKNLREFDL 1023
Cdd:COG3883 131 DADL----LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLA-------QLSAEEAAAEAQLA 199
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462509084 1024 QVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEANVTADGA 1102
Cdd:COG3883 200 ELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAGAAGAAAGAAGAGAAA 278
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
711-922 |
2.82e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 711 ELEGRMQQAEQALQDILRDAQISEGASRSLGL--QLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNRVRD--THRLI 786
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKNGLVDLSEEAKLLlqQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEllQSPVI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 787 TQMQLSLAESEAslgntnipasdhyvgpngfkSLAQEATRLAESHVEsasnMEQLTRETEDYSKQALSLVRKALHEGVGS 866
Cdd:COG3206 266 QQLRAQLAELEA--------------------ELAELSARYTPNHPD----VIALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462509084 867 GSGSpdGAVVQGLVEKLEKTKSLAQQLTR-EATQAEIEadRSYQHSLRLLDS-VSRLQ 922
Cdd:COG3206 322 LEAL--QAREASLQAQLAQLEARLAELPElEAELRRLE--REVEVARELYESlLQRLE 375
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
884-1154 |
3.33e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 45.20 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 884 EKTKSLAQQLTREATQAEIEADR---------------------SYQ-HSLRLLDSVSRLQGVSDQ--SFQVEEAKRIKQ 939
Cdd:NF041483 386 ATTRAAAEEAERIRREAEAEADRlrgeaadqaeqlkgaakddtkEYRaKTVELQEEARRLRGEAEQlrAEAVAEGERIRG 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 940 KAdslSSLVTRHMDEFKRTQKN-LGNWKEEAQQLLQNGKSGREK-SDQLLSRAN---------LAKSRAQ------EALS 1002
Cdd:NF041483 466 EA---RREAVQQIEEAARTAEElLTKAKADADELRSTATAESERvRTEAIERATtlrrqaeetLERTRAEaerlraEAEE 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1003 MGNATFYEVESILKNLR-EFDLQVDNRKAEAEEAMKRLSyisqkvSDASDKTQQAERALGSAAADAQRAKNGAGEALE-- 1079
Cdd:NF041483 543 QAEEVRAAAERAARELReETERAIAARQAEAAEELTRLH------TEAEERLTAAEEALADARAEAERIRREAAEETErl 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1080 ----------ISSEIEQEIGSLNLEANVTADGALAMEKGLA-SLKSemrEVEGELERKELEFDTNMDAVQM-VITEAQKV 1147
Cdd:NF041483 617 rteaaerirtLQAQAEQEAERLRTEAAADASAARAEGENVAvRLRS---EAAAEAERLKSEAQESADRVRAeAAAAAERV 693
|
....*..
gi 2462509084 1148 DTRAKNA 1154
Cdd:NF041483 694 GTEAAEA 700
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
783-1063 |
3.43e-04 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 43.94 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 783 HRLITQMQLSLAESEASLGNTNIPASDHYVGPNGFKSLAQEATRLAESHVESASNMEQLTRETEDYSKQALSLVRKALhe 862
Cdd:pfam06008 15 YKINYNLENLTKQLQEYLSPENAHKIQIEILEKELSSLAQETEELQKKATQTLAKAQQVNAESERTLGHAKELAEAIK-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 863 gvgsgsgspdgAVVQGLVEKLEKTKSLAQQL------TREATQAEIeadrsyQHSLRLLDSvsrlqgvSDQSFQVEEAKR 936
Cdd:pfam06008 93 -----------NLIDNIKEINEKVATLGENDfalpssDLSRMLAEA------QRMLGEIRS-------RDFGTQLQNAEA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 937 IKQKADSLsslvtrhmdeFKRTQKNLGNWKEEAQQLLQNGKSG-REKSDQL-----LSRANLAKSRAQEALSMGNAtfye 1010
Cdd:pfam06008 149 ELKAAQDL----------LSRIQTWFQSPQEENKALANALRDSlAEYEAKLsdlreLLREAAAKTRDANRLNLANQ---- 214
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2462509084 1011 vesilKNLREFdlqvdNRKAEAEEAMKRLsyISQKVSDASDKTQQAERALGSA 1063
Cdd:pfam06008 215 -----ANLREF-----QRKKEEVSEQKNQ--LEETLKTARDSLDAANLLLQEI 255
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
888-1120 |
3.47e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 888 SLAQQLTREATQAEIEADRsyQHSLRLLDSVSRLQgvSDQSFQVEEAKRIKQKADSLSSLVTRHMDEFKRTQKNLGNWKE 967
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQ--QEIAELEKELAALK--KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 968 EAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLREFdlqVDNRKAEAEEAMKRLSYISQKVS 1047
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYL---APARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462509084 1048 DASDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVE 1120
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
976-1129 |
3.53e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 976 GKSGREKSDQLLSRANLAKSRAQEAlsmgnatfyEVESiLKNLREFdLQVDNRKAEaeeamKRLSYISQKVSDASDKTQQ 1055
Cdd:TIGR02169 657 GGSRAPRGGILFSRSEPAELQRLRE---------RLEG-LKRELSS-LQSELRRIE-----NRLDELSQELSDASRKIGE 720
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462509084 1056 AERALGSAAADAQRAKngagealEISSEIEQEIGSLnleanvtadgalamEKGLASLKSEMREVEGELERKELE 1129
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLK-------ERLEELEEDLSSL--------------EQEIENVKSELKELEARIEELEED 773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
711-1146 |
3.65e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 711 ELEGRMQQAEQALQDILRDAQISEGASRSLGLQLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNRVRDTHRLITQMQ 790
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 791 LSLAESEASLgntnipasdhyvgpngfKSLAQEATRLAESHVESASNMEQLTRETEDYSKQALSLVR--KALHEGVGSGS 868
Cdd:COG1196 407 EAEEALLERL-----------------ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEeeEALLELLAELL 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 869 GSPDGAVVQGLVEKLEKTKSLAQQLTREATQAEIEADRSYQHSLRLLDSVSRLQGVSDQSFQVEEAKRIKQKADSLSSLV 948
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 949 TRHMDEFKRTQknlgnwkeEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLREFDLQVDN- 1027
Cdd:COG1196 550 NIVVEDDEVAA--------AAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDt 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1028 ---------RKAEAEEAMKRLSY------------------ISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALEI 1080
Cdd:COG1196 622 llgrtlvaaRLEAALRRAVTLAGrlrevtlegeggsaggslTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462509084 1081 SSEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQK 1146
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
967-1125 |
3.84e-04 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 43.28 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 967 EEAQQLLQNGKSG------REKS-----DQLLSRANLAKSRAQEALSMGNatfyevESI----LKNLREFDLQVDNRKAE 1031
Cdd:COG1842 33 RDMEEDLVEARQAlaqviaNQKRlerqlEELEAEAEKWEEKARLALEKGR------EDLareaLERKAELEAQAEALEAQ 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1032 AEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAK--------------NGAGEALEissEIEQEIgsLNLEANV 1097
Cdd:COG1842 107 LAQLEEQVEKLKEALRQLESKLEELKAKKDTLKARAKAAKaqekvnealsgidsDDATSALE---RMEEKI--EEMEARA 181
|
170 180 190
....*....|....*....|....*....|..
gi 2462509084 1098 TADGALAMEKGL----ASLKSEMrEVEGELER 1125
Cdd:COG1842 182 EAAAELAAGDSLddelAELEADS-EVEDELAA 212
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
709-1166 |
5.84e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 709 DTELEGRMQQAEQALQDIlrDAQIS------EGASRSLGlQLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQnRVRDT 782
Cdd:PRK02224 201 EKDLHERLNGLESELAEL--DEEIEryeeqrEQARETRD-EADEVLEEHEERREELETLEAEIEDLRETIAETE-REREE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 783 HRLITQMQLSLAESEASlgntnipASDHYVGPNGFKSLAQEA------------TRLAESHVESASNMEQLTRETEDYSK 850
Cdd:PRK02224 277 LAEEVRDLRERLEELEE-------ERDDLLAEAGLDDADAEAvearreeledrdEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 851 QALSLVRKA--LHEGVGSgsgspDGAVVQGLVEKLEKTKSlaqqlTREATQAEIEADRSyqhslRLLDSVSRLQGVSDQS 928
Cdd:PRK02224 350 DADDLEERAeeLREEAAE-----LESELEEAREAVEDRRE-----EIEELEEEIEELRE-----RFGDAPVDLGNAEDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 929 FQVEEAK-RIKQKADSLSSlvtrhmdefkrTQKNLGNWKEEAQQLLQNGK------------------SGREKSDQLlsR 989
Cdd:PRK02224 415 EELREERdELREREAELEA-----------TLRTARERVEEAEALLEAGKcpecgqpvegsphvetieEDRERVEEL--E 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 990 ANLAKSRAQ--------EALSMGNATFYEVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALG 1061
Cdd:PRK02224 482 AELEDLEEEveeveerlERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1062 SAAADAQRAKNGAGEALEISSEIEQEIGSLNLEANVTADGALAME---------KGLASLKSEMREVEGEL-ERK-ELEF 1130
Cdd:PRK02224 562 EAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDeierlrekrEALAELNDERRERLAEKrERKrELEA 641
|
490 500 510
....*....|....*....|....*....|....*.
gi 2462509084 1131 DTNMDAVQmvitEAQKVDTRAKNAGVTIQDTLNTLD 1166
Cdd:PRK02224 642 EFDEARIE----EAREDKERAEEYLEQVEEKLDELR 673
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
881-1174 |
8.31e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.98 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 881 EKLEKTKSLAQQLtreatqAEIEADRSyqhslRLLDSVSRLQGVSDQSFqvEEAKRIKQKADSLSSLvtrhMDEFKRTQK 960
Cdd:COG1340 47 ELNAQVKELREEA------QELREKRD-----ELNEKVKELKEERDELN--EKLNELREELDELRKE----LAELNKAGG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 961 NLGNWKEEAQQL---LQNGKSGREKSDQLLSRANLAKSRAQEAlsmgnatfyevesilKNLREFDLQVDNRKAEAEEAMK 1037
Cdd:COG1340 110 SIDKLRKEIERLewrQQTEVLSPEEEKELVEKIKELEKELEKA---------------KKALEKNEKLKELRAELKELRK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1038 RLSYISQKVSDASDKTQQAERALGSA--AADAQRAkngagEALEISSEIEqeigslnlEANVTADgalAMEKGLASLKSE 1115
Cdd:COG1340 175 EAEEIHKKIKELAEEAQELHEEMIELykEADELRK-----EADELHKEIV--------EAQEKAD---ELHEEIIELQKE 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462509084 1116 MREVEGELER-KELEFDTNMDAVQMVITE-AQKVDTRAKNAGvtiqdTLnTLDGLLHLMGA 1174
Cdd:COG1340 239 LRELRKELKKlRKKQRALKREKEKEELEEkAEEIFEKLKKGE-----KL-TTEELKLLQKS 293
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
879-1116 |
8.36e-04 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 42.12 E-value: 8.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 879 LVEKLEKTKSLAQQLTREATQAEIEADRsyqhslrlldSVSRLQGvsdqsfqveEAKRIKQKADSLsslvtrhmdefkrt 958
Cdd:COG1842 17 LLDKAEDPEKMLDQAIRDMEEDLVEARQ----------ALAQVIA---------NQKRLERQLEEL-------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 959 QKNLGNWKEEAQQLLQngkSGREKsdqlLSRANLAKSRAQEALSMGNATFYE-----VESILKNLREFDLQVDNRKAEAE 1033
Cdd:COG1842 64 EAEAEKWEEKARLALE---KGRED----LAREALERKAELEAQAEALEAQLAqleeqVEKLKEALRQLESKLEELKAKKD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1034 EAMKRlsyisQKVSDASDKTQQAERALGSAAA-----------DAQRAKNGAGEALEISSEIEQEIGSLNLEANVTADga 1102
Cdd:COG1842 137 TLKAR-----AKAAKAQEKVNEALSGIDSDDAtsalermeekiEEMEARAEAAAELAAGDSLDDELAELEADSEVEDE-- 209
|
250
....*....|....
gi 2462509084 1103 lamekgLASLKSEM 1116
Cdd:COG1842 210 ------LAALKAKM 217
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
879-1091 |
9.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 9.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 879 LVEKLEKTKSLAQ--QLTREATQAEIEADRsyqhsLRLLDSVSRLQgvsdqsFQVEEAKRIKQKADSLSSLVTRHMDEFK 956
Cdd:COG4913 244 LEDAREQIELLEPirELAERYAAARERLAE-----LEYLRAALRLW------FAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 957 RTQKNLGNWKEEA----QQLLQNGksGREKSD--QLLSRANLAKSRAQEALsmgnatfyevESILKNLREFDLQVDNRKA 1030
Cdd:COG4913 313 RLEARLDALREELdeleAQIRGNG--GDRLEQleREIERLERELEERERRR----------ARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462509084 1031 EAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNgagealeissEIEQEIGSL 1091
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR----------ELEAEIASL 431
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
715-1165 |
9.76e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 715 RMQQAEQALQDILRDAQISEGASRSLGL---------QLAKVRSQENSyqsRLDDLKmtveRVRALGSQYQNRVRDTHRL 785
Cdd:TIGR00606 462 ELQQLEGSSDRILELDQELRKAERELSKaeknsltetLKKEVKSLQNE---KADLDR----KLRKLDQEMEQLNHHTTTR 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 786 iTQMqLSLAESEAS----LGNTNIPASDHYVGPNGF---------------KSLAQEATRLAESHVESAS---NMEQLTR 843
Cdd:TIGR00606 535 -TQM-EMLTKDKMDkdeqIRKIKSRHSDELTSLLGYfpnkkqledwlhsksKEINQTRDRLAKLNKELASleqNKNHINN 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 844 ETEDYSKQALSLVRKaLHEGVGSGSGSPDgavVQGLVEKLEKT-KSLA-------------QQLTREATQAEIEADRSYQ 909
Cdd:TIGR00606 613 ELESKEEQLSSYEDK-LFDVCGSQDEESD---LERLKEEIEKSsKQRAmlagatavysqfiTQLTDENQSCCPVCQRVFQ 688
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 910 HSLRLLDSVSRLQGVS----DQSFQVE-EAKRIKQKADSLSSLVTRHMDEFKRTQKNLGNWKEEAQQL---LQNGKSGRE 981
Cdd:TIGR00606 689 TEAELQEFISDLQSKLrlapDKLKSTEsELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVnrdIQRLKNDIE 768
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 982 KSDQLLSRANLAKSRAQEALSmgNATFyeVESILKNLREFDLQVDNRKAEAEEAMKRLSYisQKVSDASDKTQQAERALG 1061
Cdd:TIGR00606 769 EQETLLGTIMPEEESAKVCLT--DVTI--MERFQMELKDVERKIAQQAAKLQGSDLDRTV--QQVNQEKQEKQHELDTVV 842
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1062 SAAADAQRAKNGAGEALEISSEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVI 1141
Cdd:TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ 922
|
490 500
....*....|....*....|....
gi 2462509084 1142 TEAQKVDTRAKNAGVTIQDTLNTL 1165
Cdd:TIGR00606 923 QEKEELISSKETSNKKAQDKVNDI 946
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
682-1127 |
1.06e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 682 QMDQFMQQLQRMEAlISKAQGGDGVVPDTELEGRMQQAEQALQdiLRDAQISEGAsrslglQLAKVRSQENSYQSRLDDL 761
Cdd:TIGR00606 180 SATRYIKALETLRQ-VRQTQGQKVQEHQMELKYLKQYKEKACE--IRDQITSKEA------QLESSREIVKSYENELDPL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 762 KmtvERVRALgsqyQNRVRDTHRLITQMQlSLAESEASLGNTNIPASDHYVGPngFKSLAQEATRLAESHVESASNMEQ- 840
Cdd:TIGR00606 251 K---NRLKEI----EHNLSKIMKLDNEIK-ALKSRKKQMEKDNSELELKMEKV--FQGTDEQLNDLYHNHQRTVREKERe 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 841 ---LTRETEDYSKQALSLVRKALHEGVGSGSGSPDGAVVQglvEKLEKTKSLAQQLtreATQAEIEADRSYQHSLRLLDS 917
Cdd:TIGR00606 321 lvdCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQ---EHIRARDSLIQSL---ATRLELDGFERGPFSERQIKN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 918 VSRLQgvsdQSFQVEEAKRIKQKADSLSS---LVTRHMDEFKRTQKNLGNWKE--------EAQQL------LQNGKSGr 980
Cdd:TIGR00606 395 FHTLV----IERQEDEAKTAAQLCADLQSkerLKQEQADEIRDEKKGLGRTIElkkeilekKQEELkfvikeLQQLEGS- 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 981 ekSDQLLSRAN-LAKSRAQEALSMGNATFYEVESILKNLREFDLQVDNRKAEAEEAMkrlsyiSQKVSDASDKTQQAERA 1059
Cdd:TIGR00606 470 --SDRILELDQeLRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEM------EQLNHHTTTRTQMEMLT 541
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462509084 1060 LGSAAADAQRAKNGAGEALEISS---------EIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGELERKE 1127
Cdd:TIGR00606 542 KDKMDKDEQIRKIKSRHSDELTSllgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKE 618
|
|
| tape_meas_TP901 |
TIGR01760 |
phage tail tape measure protein, TP901 family, core region; This model represents a reasonably ... |
1030-1181 |
1.14e-03 |
|
phage tail tape measure protein, TP901 family, core region; This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273790 [Multi-domain] Cd Length: 350 Bit Score: 42.73 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1030 AEAEEAMKRLsyisQKVSDASDkTQQAERALGSAAADAQRAKNGAGEALEISSEIeqeiGSLNLEAN-------VTADGA 1102
Cdd:TIGR01760 16 IEFEDAMSGV----RAVVDGSR-TKEFEDLSNQARDLGDETPFSAAQIAGAMTAL----ARAGISAKdllgatpTALKLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1103 LAMEKGL---ASLKSEMREVEGeLERKELE---------FDTNMDAVQMVITEAQKVDTRAKNAGVTIQDTLNTLdGLLH 1170
Cdd:TIGR01760 87 AASDLTAeeaASILAKIMNAFG-LTAKDSEkvadvlnytANNSAATTRDMGDALQYAGPVAKSLGVSLEETAAAT-AALA 164
|
170
....*....|.
gi 2462509084 1171 LMGAHGGEAPT 1181
Cdd:TIGR01760 165 SAGIEGEIAGT 175
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
820-1131 |
1.35e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 820 LAQEATRL--AESHVESASNMEQLTRETEDYSKQALSLVRKALHEgvgsgsgspdgAVV---QGLVEKLEktkSLAQQLT 894
Cdd:COG3096 838 LAALRQRRseLERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQ-----------ANLladETLADRLE---ELREELD 903
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 895 rEATQAEIEADRSYQHSLRLLDSVSRLQgvSD-QSF-----QVEEAK----RIKQKADSLSSLVTR--HMdefkrtqknl 962
Cdd:COG3096 904 -AAQEAQAFIQQHGKALAQLEPLVAVLQ--SDpEQFeqlqaDYLQAKeqqrRLKQQIFALSEVVQRrpHF---------- 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 963 gNWKEEAQQLLQNgksgREKSDQL---LSRANLAKSRAQEALSMGNATFYEVESILKNLREfdlQVDNRKAEAEEAMKRL 1039
Cdd:COG3096 971 -SYEDAVGLLGEN----SDLNEKLrarLEQAEEARREAREQLRQAQAQYSQYNQVLASLKS---SRDAKQQTLQELEQEL 1042
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1040 SYISQKVSDASDKTQQAERalgsaaadaqrakngagealeisSEIEQEIGSLNLEANvtadgalAMEKGLASLKSEMREV 1119
Cdd:COG3096 1043 EELGVQADAEAEERARIRR-----------------------DELHEELSQNRSRRS-------QLEKQLTRCEAEMDSL 1092
|
330
....*....|..
gi 2462509084 1120 EGELerKELEFD 1131
Cdd:COG3096 1093 QKRL--RKAERD 1102
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
818-1120 |
1.86e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 818 KSLAQEATRlaesHVESASNMEQLT-RE---TEDYskQA----LSLVRKAL--HEGVGSGSgspdgAVVQGLVEKLEK-- 885
Cdd:COG3096 299 RQLAEEQYR----LVEMARELEELSaREsdlEQDY--QAasdhLNLVQTALrqQEKIERYQ-----EDLEELTERLEEqe 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 886 --TKSLAQQLTR---EATQAEIEADR------SYQhslRLLDSVSRLQGVSDQSFQ-VEEAKRIKQKADslsslvtrhmd 953
Cdd:COG3096 368 evVEEAAEQLAEaeaRLEAAEEEVDSlksqlaDYQ---QALDVQQTRAIQYQQAVQaLEKARALCGLPD----------- 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 954 efkRTQKNLGNWKEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVE---------SILKNLREFDLQ 1024
Cdd:COG3096 434 ---LTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVErsqawqtarELLRRYRSQQAL 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1025 VDnrkaeaeeamkRLSYISQKVSDASDKTQQAERALGSAAADAQRAK---NGAGEALEISSEIEQEIGSLNLEANVTADG 1101
Cdd:COG3096 511 AQ-----------RLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGqqlDAAEELEELLAELEAQLEELEEQAAEAVEQ 579
|
330
....*....|....*....
gi 2462509084 1102 ALAMEKGLASLKSEMREVE 1120
Cdd:COG3096 580 RSELRQQLEQLRARIKELA 598
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1043-1139 |
2.44e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1043 SQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGE 1122
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90
....*....|....*..
gi 2462509084 1123 LERKELEFDTNMDAVQM 1139
Cdd:COG4942 99 LEAQKEELAELLRALYR 115
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
547-572 |
2.68e-03 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 36.95 E-value: 2.68e-03
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
933-1154 |
3.87e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 933 EAKRIKQKADSLSSlvtrHMDEFKRTQKNLGNWKEEAQQLLQNgksgREKSDQLlsRANLAKSRAQEALSMGnATFYEVE 1012
Cdd:COG4913 219 EEPDTFEAADALVE----HFDDLERAHEALEDAREQIELLEPI----RELAERY--AAARERLAELEYLRAA-LRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1013 silknlREFDLqVDNRKAEAEEAMKRLSyisQKVSDASDKTQQAERALgsAAADAQRAKNGaGEALEissEIEQEIGSLN 1092
Cdd:COG4913 288 ------RRLEL-LEAELEELRAELARLE---AELERLEARLDALREEL--DELEAQIRGNG-GDRLE---QLEREIERLE 351
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462509084 1093 LEANVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQKVDTRAKNA 1154
Cdd:COG4913 352 RELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAA 413
|
|
| Tar |
COG0840 |
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms]; |
726-1096 |
4.20e-03 |
|
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
Pssm-ID: 440602 [Multi-domain] Cd Length: 533 Bit Score: 41.16 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 726 ILRDAQISEGASRSLGLQLAKVRSQENSYQSRLDDLKMTVERVRALGSQYQNRVRDTHRLITQMQLSLAESEASLGNTNI 805
Cdd:COG0840 2 LILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 806 PASDHYVGPNGFKSLAQEATRLAESHVESASNMEQLTRETEDYSKQALSLVRKALHEGVGSGSGSPDGAVVQGLVEKLEK 885
Cdd:COG0840 82 LALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 886 TKSLAQQLTREATQAEIEADRSYQHSLRLLDSVSRLQGVSDQSFQVEEAKRIKQKADSLSS------LVTRHMDEFKRTQ 959
Cdd:COG0840 162 ALAALLEAAALALAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEgdltvrIDVDSKDEIGQLA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 960 KNLGNWKEEAQQLLQNGKSG----REKSDQLLSRANLAKSRAQEALSmgnatfyEVESILknlrefdlqvdnrkAEAEEA 1035
Cdd:COG0840 242 DAFNRMIENLRELVGQVRESaeqvASASEELAASAEELAAGAEEQAA-------SLEETA--------------AAMEEL 300
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462509084 1036 MKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEALEISSEIEQEIGSLNLEAN 1096
Cdd:COG0840 301 SATVQEVAENAQQAAELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGESSQ 361
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
91-149 |
4.57e-03 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 36.18 E-value: 4.57e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462509084 91 CDCNG---KSRQCifdrelHRQTGngfRCLnCNDNTDGIHCEKCKNGFYRHRerdRCLPCNC 149
Cdd:pfam00053 1 CDCNPhgsLSDTC------DPETG---QCL-CKPGVTGRHCDRCKPGYYGLP---SDPPQGC 49
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
820-1156 |
4.85e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 820 LAQEATRL--AESHVESASNMEQLTRETEDYSKQALSLVRKALhegvgsgsgsPDGAV--VQGLVEKLEKtksLAQQLTR 895
Cdd:PRK04863 839 LRQLNRRRveLERALADHESQEQQQRSQLEQAKEGLSALNRLL----------PRLNLlaDETLADRVEE---IREQLDE 905
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 896 eATQAEIEADRsYQHSLRLLDS-VSRLQgvSDQS------FQVEEAK----RIKQKADSLSSLVTRhmdefkrtqKNLGN 964
Cdd:PRK04863 906 -AEEAKRFVQQ-HGNALAQLEPiVSVLQ--SDPEqfeqlkQDYQQAQqtqrDAKQQAFALTEVVQR---------RAHFS 972
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 965 WkEEAQQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLR-EFDLQVDNRKaEAEEAMKRLSYis 1043
Cdd:PRK04863 973 Y-EDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKsSYDAKRQMLQ-ELKQELQDLGV-- 1048
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1044 qkvsdasdktqqaeralgsaaadaqRAKNGAGEALEI-SSEIEQeigslNLEANVTADGALamEKGLASLKSEMREVEGE 1122
Cdd:PRK04863 1049 -------------------------PADSGAEERARArRDELHA-----RLSANRSRRNQL--EKQLTFCEAEMDNLTKK 1096
|
330 340 350
....*....|....*....|....*....|....
gi 2462509084 1123 LERKELEFDTNMDAVQMVITEAQKVDTRAKNAGV 1156
Cdd:PRK04863 1097 LRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGV 1130
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1010-1146 |
5.06e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509084 1010 EVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAGEAL---EISSeIEQ 1086
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnkEYEA-LQK 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462509084 1087 EIGSLNLEANVTADGAL-------AMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQK 1146
Cdd:COG1579 97 EIESLKRRISDLEDEILelmerieELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
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| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
91-141 |
5.22e-03 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 36.18 E-value: 5.22e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 2462509084 91 CDCNG---KSRQCifdrelHRQTGngfRCLnCNDNTDGIHCEKCKNGFYRHRER 141
Cdd:cd00055 2 CDCNGhgsLSGQC------DPGTG---QCE-CKPNTTGRRCDRCAPGYYGLPSQ 45
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