NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2462510248|ref|XP_054193091|]
View 

ADAMTS-like protein 4 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ADAMTS_spacer1 pfam05986
ADAM-TS Spacer 1; This domain represents the Spacer-1 region from the ADAM-TS and ADAM-TS-like ...
542-655 6.50e-29

ADAM-TS Spacer 1; This domain represents the Spacer-1 region from the ADAM-TS and ADAM-TS-like proteins. ADAM-TS (A Disintegrin and Metalloproteinase with Thrombospondin Motifs) is closely related to the ADAM family (A Disintegrin and Metalloproteinase) and is a subfamily of the metalloprotease family, sharing a high degree of sequence similarity and conserved domain organization among its members. Members of the ADAM-TS family have been implicated in a range of diseases. ADAM-TS-like proteins lack a metalloprotease domain. They resides in the ECM and have regulatory roles. Examples of ADAM-TS-like proteins are papilin and punctin.


:

Pssm-ID: 461796  Cd Length: 115  Bit Score: 111.90  E-value: 6.50e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  542 LVSGNLTdRGGPLGYQKILWIPAGALRLQIAQLRPSSNYLALRGPGGRSIINGNWAVDP-PGSYRAGGTVFRYNRPPREe 620
Cdd:pfam05986    1 TVSGSFT-EGRAKGYVTFVTIPAGATHIHIVNRKPSFTHLAVKNVQGKYILNGKGSISLnPTYPSLLGTVLEYRRSLPA- 78
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2462510248  621 gkGESLSAEGPTTQPVDVYMIFQEE---NPGVFYQYVI 655
Cdd:pfam05986   79 --LEELHAPGPTQEDLEIQVLRQYGkgtNPGITYEYFI 114
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
783-839 8.09e-16

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 72.49  E-value: 8.09e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  783 WEAGEWTSCSRSCGPGTQHRQLQCRQEfgGGGSSVPPERCGHLPRPNITQSCQLRLC 839
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQK--GGGSIVPDSECSAQKKPPETQSCNLKPC 55
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
970-1026 2.74e-13

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 65.17  E-value: 2.74e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  970 WYTGPWGECSSECGSGTQRRDIICVSKLGteFNVTSPSNCSHLPRPPALQPCQGQAC 1026
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQKGG--GSIVPDSECSAQKKPPETQSCNLKPC 55
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
1030-1081 4.87e-11

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 59.00  E-value: 4.87e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2462510248 1030 WFSTPWSPCSRSCQGGTQTREVQCLSTN---QTLSTRCPPQLRPSRKRPCNSQPC 1081
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQKGggsIVPDSECSAQKKPPETQSCNLKPC 55
PLAC pfam08686
PLAC (protease and lacunin) domain; The PLAC (protease and lacunin) domain is a short ...
1089-1118 8.69e-11

PLAC (protease and lacunin) domain; The PLAC (protease and lacunin) domain is a short six-cysteine region that is usually found at the C terminal of proteins. It is found in a range of proteins including PACE4 (paired basic amino acid cleaving enzyme 4) and the extracellular matrix protein lacunin.


:

Pssm-ID: 462560  Cd Length: 31  Bit Score: 57.55  E-value: 8.69e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 2462510248 1089 CKDSSPHCPLVVQARLCVYPYYTATCCRSC 1118
Cdd:pfam08686    1 CKDKFANCSLVVQARLCSHKYYRQFCCRSC 30
ADAMTS_CR_3 super family cl41950
ADAMTS cysteine-rich domain; This cysteine rich domain is found in a variety of ADAMTS and ...
469-540 8.39e-10

ADAMTS cysteine-rich domain; This cysteine rich domain is found in a variety of ADAMTS and ADAMTS-like endopeptidases widely spread in animals. It is a well-conserved cysteine-rich sequence containing 10 cysteine residues. ADAM-TS (A Disintegrin and Metalloproteinase with Thrombospondin Motifs) is closely related to the ADAM family (A Disintegrin and Metalloproteinase, pfam08516) and consists of at least 20 members sharing a high degree of sequence similarity and conserved domain organization. Members of the ADAMTS family have been implicated in a range of diseases.


The actual alignment was detected with superfamily member pfam19236:

Pssm-ID: 437068  Cd Length: 115  Bit Score: 57.41  E-value: 8.39e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462510248  469 QGSQRCELNCRPRGFRFYVRHTEKVQDGTLCQPGAP------DICVAGRCLSPGCDGILGSGRRPDGCGVCGGDDSTC 540
Cdd:pfam19236   38 QGDALCRHMCRAIGESFIMKRGDSFLDGTRCMPSGPredgtlSLCVLGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTC 115
TSP1_ADAMTS super family cl40597
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
842-897 3.50e-09

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


The actual alignment was detected with superfamily member pfam19030:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 53.61  E-value: 3.50e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  842 WEVGsPWSQCSVRCGRGQRSRQVRCVG-NNGDEVSEQECaSGPPQPPSREACDMGPC 897
Cdd:pfam19030    1 WVAG-PWGECSVTCGGGVQTRLVQCVQkGGGSIVPDSEC-SAQKKPPETQSCNLKPC 55
PHA03247 super family cl33720
large tegument protein UL36; Provisional
127-449 8.39e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 8.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  127 ALLPRGQGPRPqtsPETLPLYRTQSRGRGGPLRGPASHLGREETQEIRAARRSRLRDPikpgmfgyGRVPFALPLHRNRR 206
Cdd:PHA03247  2616 PLPPDTHAPDP---PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL--------GRAAQASSPPQRPR 2684
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  207 HPRSPPrsELSLISSRGEEPIPSPTPRAEPFSANGSPQTELPPTELSVHTPSPQAEPLSPETAQTEVAPRTRPAPLRhhp 286
Cdd:PHA03247  2685 RRAARP--TVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR--- 2759
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  287 RAQASGTEPPSPTHSLGEGGFFRASPQPRRPSSQG-------WASPQVAGRRPDPFPSVPRGRGQQGQGPWGTGGTPHGP 359
Cdd:PHA03247  2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslpspWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  360 RLEPDPQHP----GAWL----PLLSNGPHASSLWSLFAP--------SSPIPRCSGESEQLRACSQAPCPPEQPDPRALQ 423
Cdd:PHA03247  2840 PPPPGPPPPslplGGSVapggDVRRRPPSRSPAAKPAAParppvrrlARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
                          330       340
                   ....*....|....*....|....*.
gi 2462510248  424 CAAFNSQEFMGQLYQWEPFTEAPLLP 449
Cdd:PHA03247  2920 QPQPPPPPQPQPPPPPPPRPQPPLAP 2945
TSP1_ADAMTS super family cl40597
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
901-964 9.21e-08

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


The actual alignment was detected with superfamily member pfam19030:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 49.76  E-value: 9.21e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462510248  901 WFHSDWSSkCSAECGTGIQRRSVVCLGSGaalgpGQGEAGagtGQSCPTGSRPPDMRACSLGPC 964
Cdd:pfam19030    1 WVAGPWGE-CSVTCGGGVQTRLVQCVQKG-----GGSIVP---DSECSAQKKPPETQSCNLKPC 55
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
80-110 9.73e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 41.03  E-value: 9.73e-05
                            10        20        30
                    ....*....|....*....|....*....|.
gi 2462510248    80 WGPWVQWASCSQPCGVGVQRRSRTCQLPTVQ 110
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQ 31
TSP1_ADAMTS super family cl40597
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
730-779 3.49e-03

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


The actual alignment was detected with superfamily member pfam19030:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 36.66  E-value: 3.49e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2462510248  730 SACSASCGKGVWRPIFLCISRESGEELDERSCAAGARPPASpEPCHGTPC 779
Cdd:pfam19030    7 GECSVTCGGGVQTRLVQCVQKGGGSIVPDSECSAQKKPPET-QSCNLKPC 55
 
Name Accession Description Interval E-value
ADAMTS_spacer1 pfam05986
ADAM-TS Spacer 1; This domain represents the Spacer-1 region from the ADAM-TS and ADAM-TS-like ...
542-655 6.50e-29

ADAM-TS Spacer 1; This domain represents the Spacer-1 region from the ADAM-TS and ADAM-TS-like proteins. ADAM-TS (A Disintegrin and Metalloproteinase with Thrombospondin Motifs) is closely related to the ADAM family (A Disintegrin and Metalloproteinase) and is a subfamily of the metalloprotease family, sharing a high degree of sequence similarity and conserved domain organization among its members. Members of the ADAM-TS family have been implicated in a range of diseases. ADAM-TS-like proteins lack a metalloprotease domain. They resides in the ECM and have regulatory roles. Examples of ADAM-TS-like proteins are papilin and punctin.


Pssm-ID: 461796  Cd Length: 115  Bit Score: 111.90  E-value: 6.50e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  542 LVSGNLTdRGGPLGYQKILWIPAGALRLQIAQLRPSSNYLALRGPGGRSIINGNWAVDP-PGSYRAGGTVFRYNRPPREe 620
Cdd:pfam05986    1 TVSGSFT-EGRAKGYVTFVTIPAGATHIHIVNRKPSFTHLAVKNVQGKYILNGKGSISLnPTYPSLLGTVLEYRRSLPA- 78
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2462510248  621 gkGESLSAEGPTTQPVDVYMIFQEE---NPGVFYQYVI 655
Cdd:pfam05986   79 --LEELHAPGPTQEDLEIQVLRQYGkgtNPGITYEYFI 114
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
783-839 8.09e-16

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 72.49  E-value: 8.09e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  783 WEAGEWTSCSRSCGPGTQHRQLQCRQEfgGGGSSVPPERCGHLPRPNITQSCQLRLC 839
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQK--GGGSIVPDSECSAQKKPPETQSCNLKPC 55
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
970-1026 2.74e-13

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 65.17  E-value: 2.74e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  970 WYTGPWGECSSECGSGTQRRDIICVSKLGteFNVTSPSNCSHLPRPPALQPCQGQAC 1026
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQKGG--GSIVPDSECSAQKKPPETQSCNLKPC 55
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
1030-1081 4.87e-11

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 59.00  E-value: 4.87e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2462510248 1030 WFSTPWSPCSRSCQGGTQTREVQCLSTN---QTLSTRCPPQLRPSRKRPCNSQPC 1081
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQKGggsIVPDSECSAQKKPPETQSCNLKPC 55
PLAC pfam08686
PLAC (protease and lacunin) domain; The PLAC (protease and lacunin) domain is a short ...
1089-1118 8.69e-11

PLAC (protease and lacunin) domain; The PLAC (protease and lacunin) domain is a short six-cysteine region that is usually found at the C terminal of proteins. It is found in a range of proteins including PACE4 (paired basic amino acid cleaving enzyme 4) and the extracellular matrix protein lacunin.


Pssm-ID: 462560  Cd Length: 31  Bit Score: 57.55  E-value: 8.69e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 2462510248 1089 CKDSSPHCPLVVQARLCVYPYYTATCCRSC 1118
Cdd:pfam08686    1 CKDKFANCSLVVQARLCSHKYYRQFCCRSC 30
ADAMTS_CR_3 pfam19236
ADAMTS cysteine-rich domain; This cysteine rich domain is found in a variety of ADAMTS and ...
469-540 8.39e-10

ADAMTS cysteine-rich domain; This cysteine rich domain is found in a variety of ADAMTS and ADAMTS-like endopeptidases widely spread in animals. It is a well-conserved cysteine-rich sequence containing 10 cysteine residues. ADAM-TS (A Disintegrin and Metalloproteinase with Thrombospondin Motifs) is closely related to the ADAM family (A Disintegrin and Metalloproteinase, pfam08516) and consists of at least 20 members sharing a high degree of sequence similarity and conserved domain organization. Members of the ADAMTS family have been implicated in a range of diseases.


Pssm-ID: 437068  Cd Length: 115  Bit Score: 57.41  E-value: 8.39e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462510248  469 QGSQRCELNCRPRGFRFYVRHTEKVQDGTLCQPGAP------DICVAGRCLSPGCDGILGSGRRPDGCGVCGGDDSTC 540
Cdd:pfam19236   38 QGDALCRHMCRAIGESFIMKRGDSFLDGTRCMPSGPredgtlSLCVLGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTC 115
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
842-897 3.50e-09

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 53.61  E-value: 3.50e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  842 WEVGsPWSQCSVRCGRGQRSRQVRCVG-NNGDEVSEQECaSGPPQPPSREACDMGPC 897
Cdd:pfam19030    1 WVAG-PWGECSVTCGGGVQTRLVQCVQkGGGSIVPDSEC-SAQKKPPETQSCNLKPC 55
PHA03247 PHA03247
large tegument protein UL36; Provisional
127-449 8.39e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 8.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  127 ALLPRGQGPRPqtsPETLPLYRTQSRGRGGPLRGPASHLGREETQEIRAARRSRLRDPikpgmfgyGRVPFALPLHRNRR 206
Cdd:PHA03247  2616 PLPPDTHAPDP---PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL--------GRAAQASSPPQRPR 2684
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  207 HPRSPPrsELSLISSRGEEPIPSPTPRAEPFSANGSPQTELPPTELSVHTPSPQAEPLSPETAQTEVAPRTRPAPLRhhp 286
Cdd:PHA03247  2685 RRAARP--TVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR--- 2759
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  287 RAQASGTEPPSPTHSLGEGGFFRASPQPRRPSSQG-------WASPQVAGRRPDPFPSVPRGRGQQGQGPWGTGGTPHGP 359
Cdd:PHA03247  2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslpspWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  360 RLEPDPQHP----GAWL----PLLSNGPHASSLWSLFAP--------SSPIPRCSGESEQLRACSQAPCPPEQPDPRALQ 423
Cdd:PHA03247  2840 PPPPGPPPPslplGGSVapggDVRRRPPSRSPAAKPAAParppvrrlARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
                          330       340
                   ....*....|....*....|....*.
gi 2462510248  424 CAAFNSQEFMGQLYQWEPFTEAPLLP 449
Cdd:PHA03247  2920 QPQPPPPPQPQPPPPPPPRPQPPLAP 2945
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
901-964 9.21e-08

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 49.76  E-value: 9.21e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462510248  901 WFHSDWSSkCSAECGTGIQRRSVVCLGSGaalgpGQGEAGagtGQSCPTGSRPPDMRACSLGPC 964
Cdd:pfam19030    1 WVAGPWGE-CSVTCGGGVQTRLVQCVQKG-----GGSIVP---DSECSAQKKPPETQSCNLKPC 55
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
1033-1082 4.58e-06

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 44.89  E-value: 4.58e-06
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|.
gi 2462510248  1033 TPWSPCSRSCQGGTQTREVQCLSTNQTLS-TRCPPQLRpsRKRPCNSQPCS 1082
Cdd:smart00209    5 SEWSPCSVTCGGGVQTRTRSCCSPPPQNGgGPCTGEDV--ETRACNEQPCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
842-897 3.50e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 42.19  E-value: 3.50e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462510248   842 WEVGSPWSQCSVRCGRGQRSRQVRCVGNNGDeVSEQECasgPPQPPSREACDMGPC 897
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQ-NGGGPC---TGEDVETRACNEQPC 52
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
80-110 9.73e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 41.03  E-value: 9.73e-05
                            10        20        30
                    ....*....|....*....|....*....|.
gi 2462510248    80 WGPWVQWASCSQPCGVGVQRRSRTCQLPTVQ 110
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQ 31
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
132-349 6.52e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.87  E-value: 6.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  132 GQGPRPQTSPETLPLYRTQSRGRGGPLRGPAShlgreeTQEIRAARRSRLRDPIKPGMFGYGRVPFALPLHRNRRHPRSP 211
Cdd:pfam09770  164 GVAPKKAAAPAPAPQPAAQPASLPAPSRKMMS------LEEVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFP 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  212 PRSElslissrgeepiPSPTPRAEPFSANGSPQTELPPTELSvHTPSPQAEPLSPetaqtevAPRTRPAPLRHHPRAQas 291
Cdd:pfam09770  238 PQIQ------------QQQQPQQQPQQPQQHPGQGHPVTILQ-RPQSPQPDPAQP-------SIQPQAQQFHQQPPPV-- 295
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2462510248  292 gtePPSPTHSLgeggffrasPQPRRPSSQGWASPQVAGRRPDPFPSVPRGRGQQGQGP 349
Cdd:pfam09770  296 ---PVQPTQIL---------QNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGR 341
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
839-886 2.50e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 41.87  E-value: 2.50e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2462510248  839 CGHWEvgsPWSQCSVRCGRGQRSRQ-----VRCVGNNGDEVSEQECasgPPQP 886
Cdd:PTZ00441   240 CGPWD---EWTPCSVTCGKGTHSRSrpilhEGCTTHMVEECEEEEC---PVEP 286
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
730-779 3.49e-03

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 36.66  E-value: 3.49e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2462510248  730 SACSASCGKGVWRPIFLCISRESGEELDERSCAAGARPPASpEPCHGTPC 779
Cdd:pfam19030    7 GECSVTCGGGVQTRLVQCVQKGGGSIVPDSECSAQKKPPET-QSCNLKPC 55
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
783-839 6.99e-03

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 36.03  E-value: 6.99e-03
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248   783 WEAGEWTSCSRSCGPGTQHRQLQCRqefgGGGSSVPPERCGHLPRpnITQSCQLRLC 839
Cdd:smart00209    2 SEWSEWSPCSVTCGGGVQTRTRSCC----SPPPQNGGGPCTGEDV--ETRACNEQPC 52
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
229-420 9.09e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.14  E-value: 9.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  229 SPTPRAEPfsangSPQTELPPTELSVHTPSPQAEPlSPETAQTEVaprtRPAPLRHHPRAQASGTEPPSPTHSLGEGGFF 308
Cdd:NF033839   294 APKPGMQP-----SPQPEKKEVKPEPETPKPEVKP-QLEKPKPEV----KPQPEKPKPEVKPQLETPKPEVKPQPEKPKP 363
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  309 RASPQPRRPSSQGWASPQVAGRRPDPFPSVPRGRGQQgqgpwgtggTPHGPRLEPDPQhPGAWLPLLSNGPHASSLWSLF 388
Cdd:NF033839   364 EVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKP---------QPEKPKPEVKPQ-PEKPKPEVKPQPEKPKPEVKP 433
                          170       180       190
                   ....*....|....*....|....*....|..
gi 2462510248  389 APSSPIPRCSGESEQLRacSQAPCPPEQPDPR 420
Cdd:NF033839   434 QPEKPKPEVKPQPEKPK--PEVKPQPETPKPE 463
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
81-103 9.31e-03

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 35.33  E-value: 9.31e-03
                           10        20
                   ....*....|....*....|...
gi 2462510248   81 GPWVQWASCSQPCGVGVQRRSRT 103
Cdd:pfam19028    4 SEWSEWSECSVTCGGGVQTRTRT 26
 
Name Accession Description Interval E-value
ADAMTS_spacer1 pfam05986
ADAM-TS Spacer 1; This domain represents the Spacer-1 region from the ADAM-TS and ADAM-TS-like ...
542-655 6.50e-29

ADAM-TS Spacer 1; This domain represents the Spacer-1 region from the ADAM-TS and ADAM-TS-like proteins. ADAM-TS (A Disintegrin and Metalloproteinase with Thrombospondin Motifs) is closely related to the ADAM family (A Disintegrin and Metalloproteinase) and is a subfamily of the metalloprotease family, sharing a high degree of sequence similarity and conserved domain organization among its members. Members of the ADAM-TS family have been implicated in a range of diseases. ADAM-TS-like proteins lack a metalloprotease domain. They resides in the ECM and have regulatory roles. Examples of ADAM-TS-like proteins are papilin and punctin.


Pssm-ID: 461796  Cd Length: 115  Bit Score: 111.90  E-value: 6.50e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  542 LVSGNLTdRGGPLGYQKILWIPAGALRLQIAQLRPSSNYLALRGPGGRSIINGNWAVDP-PGSYRAGGTVFRYNRPPREe 620
Cdd:pfam05986    1 TVSGSFT-EGRAKGYVTFVTIPAGATHIHIVNRKPSFTHLAVKNVQGKYILNGKGSISLnPTYPSLLGTVLEYRRSLPA- 78
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2462510248  621 gkGESLSAEGPTTQPVDVYMIFQEE---NPGVFYQYVI 655
Cdd:pfam05986   79 --LEELHAPGPTQEDLEIQVLRQYGkgtNPGITYEYFI 114
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
783-839 8.09e-16

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 72.49  E-value: 8.09e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  783 WEAGEWTSCSRSCGPGTQHRQLQCRQEfgGGGSSVPPERCGHLPRPNITQSCQLRLC 839
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQK--GGGSIVPDSECSAQKKPPETQSCNLKPC 55
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
970-1026 2.74e-13

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 65.17  E-value: 2.74e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  970 WYTGPWGECSSECGSGTQRRDIICVSKLGteFNVTSPSNCSHLPRPPALQPCQGQAC 1026
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQKGG--GSIVPDSECSAQKKPPETQSCNLKPC 55
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
1030-1081 4.87e-11

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 59.00  E-value: 4.87e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2462510248 1030 WFSTPWSPCSRSCQGGTQTREVQCLSTN---QTLSTRCPPQLRPSRKRPCNSQPC 1081
Cdd:pfam19030    1 WVAGPWGECSVTCGGGVQTRLVQCVQKGggsIVPDSECSAQKKPPETQSCNLKPC 55
PLAC pfam08686
PLAC (protease and lacunin) domain; The PLAC (protease and lacunin) domain is a short ...
1089-1118 8.69e-11

PLAC (protease and lacunin) domain; The PLAC (protease and lacunin) domain is a short six-cysteine region that is usually found at the C terminal of proteins. It is found in a range of proteins including PACE4 (paired basic amino acid cleaving enzyme 4) and the extracellular matrix protein lacunin.


Pssm-ID: 462560  Cd Length: 31  Bit Score: 57.55  E-value: 8.69e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 2462510248 1089 CKDSSPHCPLVVQARLCVYPYYTATCCRSC 1118
Cdd:pfam08686    1 CKDKFANCSLVVQARLCSHKYYRQFCCRSC 30
ADAMTS_CR_3 pfam19236
ADAMTS cysteine-rich domain; This cysteine rich domain is found in a variety of ADAMTS and ...
469-540 8.39e-10

ADAMTS cysteine-rich domain; This cysteine rich domain is found in a variety of ADAMTS and ADAMTS-like endopeptidases widely spread in animals. It is a well-conserved cysteine-rich sequence containing 10 cysteine residues. ADAM-TS (A Disintegrin and Metalloproteinase with Thrombospondin Motifs) is closely related to the ADAM family (A Disintegrin and Metalloproteinase, pfam08516) and consists of at least 20 members sharing a high degree of sequence similarity and conserved domain organization. Members of the ADAMTS family have been implicated in a range of diseases.


Pssm-ID: 437068  Cd Length: 115  Bit Score: 57.41  E-value: 8.39e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462510248  469 QGSQRCELNCRPRGFRFYVRHTEKVQDGTLCQPGAP------DICVAGRCLSPGCDGILGSGRRPDGCGVCGGDDSTC 540
Cdd:pfam19236   38 QGDALCRHMCRAIGESFIMKRGDSFLDGTRCMPSGPredgtlSLCVLGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTC 115
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
842-897 3.50e-09

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 53.61  E-value: 3.50e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248  842 WEVGsPWSQCSVRCGRGQRSRQVRCVG-NNGDEVSEQECaSGPPQPPSREACDMGPC 897
Cdd:pfam19030    1 WVAG-PWGECSVTCGGGVQTRLVQCVQkGGGSIVPDSEC-SAQKKPPETQSCNLKPC 55
PHA03247 PHA03247
large tegument protein UL36; Provisional
127-449 8.39e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 8.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  127 ALLPRGQGPRPqtsPETLPLYRTQSRGRGGPLRGPASHLGREETQEIRAARRSRLRDPikpgmfgyGRVPFALPLHRNRR 206
Cdd:PHA03247  2616 PLPPDTHAPDP---PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL--------GRAAQASSPPQRPR 2684
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  207 HPRSPPrsELSLISSRGEEPIPSPTPRAEPFSANGSPQTELPPTELSVHTPSPQAEPLSPETAQTEVAPRTRPAPLRhhp 286
Cdd:PHA03247  2685 RRAARP--TVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR--- 2759
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  287 RAQASGTEPPSPTHSLGEGGFFRASPQPRRPSSQG-------WASPQVAGRRPDPFPSVPRGRGQQGQGPWGTGGTPHGP 359
Cdd:PHA03247  2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslpspWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  360 RLEPDPQHP----GAWL----PLLSNGPHASSLWSLFAP--------SSPIPRCSGESEQLRACSQAPCPPEQPDPRALQ 423
Cdd:PHA03247  2840 PPPPGPPPPslplGGSVapggDVRRRPPSRSPAAKPAAParppvrrlARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
                          330       340
                   ....*....|....*....|....*.
gi 2462510248  424 CAAFNSQEFMGQLYQWEPFTEAPLLP 449
Cdd:PHA03247  2920 QPQPPPPPQPQPPPPPPPRPQPPLAP 2945
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
901-964 9.21e-08

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 49.76  E-value: 9.21e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462510248  901 WFHSDWSSkCSAECGTGIQRRSVVCLGSGaalgpGQGEAGagtGQSCPTGSRPPDMRACSLGPC 964
Cdd:pfam19030    1 WVAGPWGE-CSVTCGGGVQTRLVQCVQKG-----GGSIVP---DSECSAQKKPPETQSCNLKPC 55
PHA03247 PHA03247
large tegument protein UL36; Provisional
69-417 1.33e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 1.33e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248   69 PTEEGQGPEGVWGPWVQWASCSQPCGVGVQRRSRTCQLPTVQLHPSLPLPPRPPRHPEALL---------PRGQGPRPQT 139
Cdd:PHA03247  2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLtsladppppPPTPEPAPHA 2714
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  140 SPETLPLYRTQSRGRGGPLRGPASHLGREETQEIRA----ARRSRLRDPIKPGMFGYGRVPFALPLHRNRRHPRSP-PRS 214
Cdd:PHA03247  2715 LVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATpggpARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASlSES 2794
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  215 ELSLISSRGEEPIPSP-TPRAEPFSANGSPQTELPPTELSVHTPSPQAEPLSPETAQTE--VAPrtrPAPLRHHPRAQAS 291
Cdd:PHA03247  2795 RESLPSPWDPADPPAAvLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsVAP---GGDVRRRPPSRSP 2871
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  292 GTEPPSPTHSLGEGgfFRASPQPRRPSSQGWASPQVAGRRPDPFPSVPRGRGQQGQGPWGTGGTPHGPR----LEPDPQH 367
Cdd:PHA03247  2872 AAKPAAPARPPVRR--LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRpqppLAPTTDP 2949
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 2462510248  368 PGAWLPllSNGPHASSLWSLFAPSSPIPRcsGESEQLRACSQAPCPPEQP 417
Cdd:PHA03247  2950 AGAGEP--SGAVPQPWLGALVPGRVAVPR--FRVPQPAPSREAPASSTPP 2995
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
1033-1082 4.58e-06

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 44.89  E-value: 4.58e-06
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|.
gi 2462510248  1033 TPWSPCSRSCQGGTQTREVQCLSTNQTLS-TRCPPQLRpsRKRPCNSQPCS 1082
Cdd:smart00209    5 SEWSPCSVTCGGGVQTRTRSCCSPPPQNGgGPCTGEDV--ETRACNEQPCP 53
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
208-370 7.36e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 7.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  208 PRSPPRSELSLISSRGEEPIPSPTPRAEPFSANGSPQTELPPTELSVHTPSPQAEPLSPETAQTEVAPRTRPAPLRHHPR 287
Cdd:PRK07764   597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  288 AQASGTEPPSPTHSLGEGGFFRASPQPRRPssQGWASPQVAGRRPDPfPSVPRGRGQQGQGPWGTGGTPHGPRLEPDPQH 367
Cdd:PRK07764   677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPA--ATPPAGQADDPAAQP-PQAAQGASAPSPAADDPVPLPPEPDDPPDPAG 753

                   ...
gi 2462510248  368 PGA 370
Cdd:PRK07764   754 APA 756
PHA03247 PHA03247
large tegument protein UL36; Provisional
257-420 1.31e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 1.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  257 PSPQAEPLSPETAQTEVAPRTRPAPLRHHPRAQASGTEPPSPTHSLGEGGFFRASPQPRRPSSQGWASPqvAGRRPDPFP 336
Cdd:PHA03247  2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP--DTHAPDPPP 2628
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  337 SVPRGRGQQGQGPwGTGGTPHGPRLEPDPQHPGAWLP----LLSNGPHASSlwslfAPSSPIPRCSGES-EQLRACSQAP 411
Cdd:PHA03247  2629 PSPSPAANEPDPH-PPPTVPPPERPRDDPAPGRVSRPrrarRLGRAAQASS-----PPQRPRRRAARPTvGSLTSLADPP 2702

                   ....*....
gi 2462510248  412 CPPEQPDPR 420
Cdd:PHA03247  2703 PPPPTPEPA 2711
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
842-897 3.50e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 42.19  E-value: 3.50e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462510248   842 WEVGSPWSQCSVRCGRGQRSRQVRCVGNNGDeVSEQECasgPPQPPSREACDMGPC 897
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQ-NGGGPC---TGEDVETRACNEQPC 52
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
80-110 9.73e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 41.03  E-value: 9.73e-05
                            10        20        30
                    ....*....|....*....|....*....|.
gi 2462510248    80 WGPWVQWASCSQPCGVGVQRRSRTCQLPTVQ 110
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQ 31
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
1033-1081 1.04e-04

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 41.11  E-value: 1.04e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2462510248 1033 TPWSPCSRSCQGGTQTREVQCLSTNQTLSTRCPPQLrpsRKRPCNSQPC 1081
Cdd:pfam19028    7 SEWSECSVTCGGGVQTRTRTVIVEPQNGGRPCPELL---ERRPCNLPPC 52
dnaA PRK14086
chromosomal replication initiator protein DnaA;
206-420 4.46e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 44.43  E-value: 4.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  206 RHPRSPPRSELSLISSRGEEPIPSPTPRAEPfsangSPQTELPPTELSVHTPSPQAEPLSPETAQTEVAPRTRPAPLRHH 285
Cdd:PRK14086    76 RELGRPIRIAITVDPSAGEPAPPPPHARRTS-----EPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQ 150
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  286 PRAQaSGTEPPSPthslgeggfFRASPQPRR---PSSQGWASPQVAGRRPDPF-PSVPRGRGQQGQgPWGTGGTPhgprl 361
Cdd:PRK14086   151 QRPE-PGAWPRAA---------DDYGWQQQRlgfPPRAPYASPASYAPEQERDrEPYDAGRPEYDQ-RRRDYDHP----- 214
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462510248  362 EPDPQHPGAW---LPLLSNG---PHASSLWSLFAPSSPIPRCSGESEQLRACSQAPCP-PEQPDPR 420
Cdd:PRK14086   215 RPDWDRPRRDrtdRPEPPPGaghVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPgPGEPTAR 280
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
132-349 6.52e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.87  E-value: 6.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  132 GQGPRPQTSPETLPLYRTQSRGRGGPLRGPAShlgreeTQEIRAARRSRLRDPIKPGMFGYGRVPFALPLHRNRRHPRSP 211
Cdd:pfam09770  164 GVAPKKAAAPAPAPQPAAQPASLPAPSRKMMS------LEEVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFP 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  212 PRSElslissrgeepiPSPTPRAEPFSANGSPQTELPPTELSvHTPSPQAEPLSPetaqtevAPRTRPAPLRHHPRAQas 291
Cdd:pfam09770  238 PQIQ------------QQQQPQQQPQQPQQHPGQGHPVTILQ-RPQSPQPDPAQP-------SIQPQAQQFHQQPPPV-- 295
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2462510248  292 gtePPSPTHSLgeggffrasPQPRRPSSQGWASPQVAGRRPDPFPSVPRGRGQQGQGP 349
Cdd:pfam09770  296 ---PVQPTQIL---------QNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGR 341
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
208-420 1.22e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 1.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  208 PRSPPRSELSLISSRGEEPIPSPTPRAEPFSANGSPQTELPPTELSVHTPSPQAEPLSPETAQTEVAPRT------RPAP 281
Cdd:PHA03307   128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTppaaasPRPP 207
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  282 LRHHPRAQASGTEPPSPTHSLGEGGFFRASPQPRRPSSQGWASPQVAGRRPDPFPSVPRGRGQQGQGPWGTG-------- 353
Cdd:PHA03307   208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSsrpgpass 287
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462510248  354 -GTPHGPRLEPDPQHPGAwlPLLSNGPHASSLWSLFAPSS-PIPRCSGESEqlRACSQAPCPPEQPDPR 420
Cdd:PHA03307   288 sSSPRERSPSPSPSSPGS--GPAPSSPRASSSSSSSRESSsSSTSSSSESS--RGAAVSPGPSPSRSPS 352
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
222-336 2.04e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 2.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  222 RGEEPIPSPTPRAEPFSANGSpqTELPPTElsvhTPSPQAEPLSPETAQTEVAPRTRPAPLRHH-PRAQASGTEPPSPTH 300
Cdd:PRK14951   383 RPEAAAPAAAPVAQAAAAPAP--AAAPAAA----ASAPAAPPAAAPPAPVAAPAAAAPAAAPAAaPAAVALAPAPPAQAA 456
                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 2462510248  301 SLGEGGFFRASPQPRRPSSQGWASPQVAGRRPDPFP 336
Cdd:PRK14951   457 PETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PHA03378 PHA03378
EBNA-3B; Provisional
136-373 2.05e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 42.36  E-value: 2.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  136 RPQTSPETLPLYRT--QSRGRGGPLRGPASHLGREETQ----EIRAARRSRLrdPIKPGMFGYGRVPFALPLHRNRRHPR 209
Cdd:PHA03378   575 QPLTSPTTSQLASSapSYAQTPWPVPHPSQTPEPPTTQshipETSAPRQWPM--PLRPIPMRPLRMQPITFNVLVFPTPH 652
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  210 SPPRSELSLISSRGEEPI-----PSPTPRAEPFSANGSPQTELPPTELSVHTPSPQAEP--LSPETAQTEVAPRTRPAPL 282
Cdd:PHA03378   653 QPPQVEITPYKPTWTQIGhipyqPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPgrAQRPAAATGRARPPAAAPG 732
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  283 RHHPRAQASGTEPPsPTHSLGEGGFFRASPQPRRPSSQGWASPQvagrrPDPFPSVPRGRGQQgqgpwgtggtphgPRLE 362
Cdd:PHA03378   733 RARPPAAAPGRARP-PAAAPGRARPPAAAPGRARPPAAAPGAPT-----PQPPPQAPPAPQQR-------------PRGA 793
                          250
                   ....*....|.
gi 2462510248  363 PDPQHPGAWLP 373
Cdd:PHA03378   794 PTPQPPPQAGP 804
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
839-886 2.50e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 41.87  E-value: 2.50e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2462510248  839 CGHWEvgsPWSQCSVRCGRGQRSRQ-----VRCVGNNGDEVSEQECasgPPQP 886
Cdd:PTZ00441   240 CGPWD---EWTPCSVTCGKGTHSRSrpilhEGCTTHMVEECEEEEC---PVEP 286
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
730-779 3.49e-03

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 36.66  E-value: 3.49e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2462510248  730 SACSASCGKGVWRPIFLCISRESGEELDERSCAAGARPPASpEPCHGTPC 779
Cdd:pfam19030    7 GECSVTCGGGVQTRLVQCVQKGGGSIVPDSECSAQKKPPET-QSCNLKPC 55
TSP_1 pfam00090
Thrombospondin type 1 domain;
1033-1081 4.56e-03

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 36.24  E-value: 4.56e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 2462510248 1033 TPWSPCSRSCQGGTQTREVQCLStNQTLSTRCPPQLRpsRKRPCNSQPC 1081
Cdd:pfam00090    4 SPWSPCSVTCGKGIQVRQRTCKS-PFPGGEPCTGDDI--ETQACKMDKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
783-839 6.99e-03

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 36.03  E-value: 6.99e-03
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462510248   783 WEAGEWTSCSRSCGPGTQHRQLQCRqefgGGGSSVPPERCGHLPRpnITQSCQLRLC 839
Cdd:smart00209    2 SEWSEWSPCSVTCGGGVQTRTRSCC----SPPPQNGGGPCTGEDV--ETRACNEQPC 52
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
226-451 7.22e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 7.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  226 PIPSPTPRAEPFSANGSPQTELPPTELSVHTPSPQAEPLSPETAQTEVAPRTRPAP-----LRHHPRAQASGTEPPSPTH 300
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPealaaARQASARGPGGAPAPAPAP 454
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  301 SlgeggffrASPQPR-RPSSQGWASPQVAGRRPDPF--PSVPRGRGQQGQGPW-GTGGTPHGPRLEPDPQHPGAWLPLLS 376
Cdd:PRK12323   455 A--------AAPAAAaRPAAAGPRPVAAAAAAAPARaaPAAAPAPADDDPPPWeELPPEFASPAPAQPDAAPAGWVAESI 526
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462510248  377 NGPHASSLWSLFAPSSPIPrcsgeseqlrACSQAPCPPEQPDPRALQCAAFNSQEFMGQLYQWEPFTEAPLLPLR 451
Cdd:PRK12323   527 PDPATADPDDAFETLAPAP----------AAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLPVR 591
TSP_1 pfam00090
Thrombospondin type 1 domain;
846-869 7.54e-03

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 35.47  E-value: 7.54e-03
                           10        20
                   ....*....|....*....|....
gi 2462510248  846 SPWSQCSVRCGRGQRSRQVRCVGN 869
Cdd:pfam00090    4 SPWSPCSVTCGKGIQVRQRTCKSP 27
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
257-421 8.71e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 8.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  257 PSPQAEPLSPETAQTEVAPRTRPAPLRHHPRAQASGTEPPSPTHSLGEGGFFRASPQPRRPSSQGwaspqvAGRRPDPFP 336
Cdd:PRK07764   597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD------ASDGGDGWP 670
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  337 SVPRGRGQQGQGPWGTGGTPHGPRLEPDPQ-HPGAWlpllsnGPHASSLWSLFAPSSPIPRCSGESEQLRACSQAPCPPE 415
Cdd:PRK07764   671 AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQpAPAPA------ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                   ....*.
gi 2462510248  416 QPDPRA 421
Cdd:PRK07764   745 PDDPPD 750
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
229-420 9.09e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.14  E-value: 9.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  229 SPTPRAEPfsangSPQTELPPTELSVHTPSPQAEPlSPETAQTEVaprtRPAPLRHHPRAQASGTEPPSPTHSLGEGGFF 308
Cdd:NF033839   294 APKPGMQP-----SPQPEKKEVKPEPETPKPEVKP-QLEKPKPEV----KPQPEKPKPEVKPQLETPKPEVKPQPEKPKP 363
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  309 RASPQPRRPSSQGWASPQVAGRRPDPFPSVPRGRGQQgqgpwgtggTPHGPRLEPDPQhPGAWLPLLSNGPHASSLWSLF 388
Cdd:NF033839   364 EVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKP---------QPEKPKPEVKPQ-PEKPKPEVKPQPEKPKPEVKP 433
                          170       180       190
                   ....*....|....*....|....*....|..
gi 2462510248  389 APSSPIPRCSGESEQLRacSQAPCPPEQPDPR 420
Cdd:NF033839   434 QPEKPKPEVKPQPEKPK--PEVKPQPETPKPE 463
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
81-103 9.31e-03

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 35.33  E-value: 9.31e-03
                           10        20
                   ....*....|....*....|...
gi 2462510248   81 GPWVQWASCSQPCGVGVQRRSRT 103
Cdd:pfam19028    4 SEWSEWSECSVTCGGGVQTRTRT 26
TSP_1 pfam00090
Thrombospondin type 1 domain;
81-107 9.56e-03

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 35.47  E-value: 9.56e-03
                           10        20
                   ....*....|....*....|....*..
gi 2462510248   81 GPWVQWASCSQPCGVGVQRRSRTCQLP 107
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQVRQRTCKSP 27
PHA03247 PHA03247
large tegument protein UL36; Provisional
119-425 9.82e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 9.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  119 PRPPRHPEALLPRGQGPRPQtspetlplyrtqsrgrggplrGPAShlgreetqeiraarRSRLRDPIKPGMFGYGRVPFA 198
Cdd:PHA03247  2559 APPAAPDRSVPPPRPAPRPS---------------------EPAV--------------TSRARRPDAPPQSARPRAPVD 2603
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  199 lplhrNRRHPRSPPRSELSLISSRGEEPiPSPTPRAEPFSANGSPQTELPPTELSVHTPSPQAEPLSPETAQTEVAPRTR 278
Cdd:PHA03247  2604 -----DRGDPRGPAPPSPLPPDTHAPDP-PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAS 2677
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  279 PAPLRHHPRA---------QASGTEPPSPTHSLGEGGFFRASPQPRRPSSQGWASPQV-AGRRPDPFPSVPRGRGqqGQG 348
Cdd:PHA03247  2678 SPPQRPRRRAarptvgsltSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALpAAPAPPAVPAGPATPG--GPA 2755
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462510248  349 PWGTGGTPHGPRLEPDPQHPGA----WLPLLSNGPHASSLWSLFAPSSPIPRCSGESEQLRA--CSQAPCPPEQPDPRAL 422
Cdd:PHA03247  2756 RPARPPTTAGPPAPAPPAAPAAgpprRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlpPAASPAGPLPPPTSAQ 2835

                   ...
gi 2462510248  423 QCA 425
Cdd:PHA03247  2836 PTA 2838
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH