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Conserved domains on  [gi|2462577501|ref|XP_054200051|]
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thrombospondin type-1 domain-containing protein 7B isoform X2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 3-61 2.55e-14

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


:

Pssm-ID: 465948  Cd Length: 52  Bit Score: 68.07  E-value: 2.55e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2462577501    3 CVLSEWTEWSSCSQSCsnknSDGKQTRSRTILALAGEGGKPCPPsqaLQEHRLCNDHSC 61
Cdd:pfam19028    1 CVVSEWSEWSECSVTC----GGGVQTRTRTVIVEPQNGGRPCPE---LLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 649-702 1.60e-13

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


:

Pssm-ID: 465948  Cd Length: 52  Bit Score: 65.76  E-value: 1.60e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2462577501  649 CQLSGWTAWTECSQTCGhGGRMSRTRFIIMPTQGEGRPCPtELTQEKTCPVTPC 702
Cdd:pfam19028    1 CVVSEWSEWSECSVTCG-GGVQTRTRTVIVEPQNGGRPCP-ELLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 772-831 6.11e-10

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


:

Pssm-ID: 465948  Cd Length: 52  Bit Score: 55.75  E-value: 6.11e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462577501  772 CHLTEWSEWSTCELTCidgrsfeTVGRQSRSRTFIIQSFENQDSCPQQvLETRPCTGGKC 831
Cdd:pfam19028    1 CVVSEWSEWSECSVTC-------GGGVQTRTRTVIVEPQNGGRPCPEL-LERRPCNLPPC 52
TSP1_spondin super family cl46269
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 139-190 1.34e-09

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


The actual alignment was detected with superfamily member pfam19028:

Pssm-ID: 480609  Cd Length: 52  Bit Score: 54.59  E-value: 1.34e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2462577501  139 CIVTAFSEWTPCPRMCQAGnatvKQSRYRIIIQEAANGGQECPDTLyEEREC 190
Cdd:pfam19028    1 CVVSEWSEWSECSVTCGGG----VQTRTRTVIVEPQNGGRPCPELL-ERRPC 47
TSP1_ADAMTS super family cl40597
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 66-134 3.46e-07

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


The actual alignment was detected with superfamily member pfam19030:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 3.46e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462577501   66 WETSPWGPCSedtlvtalnatigwngeATCGVGIQTRRVFCVKSHVGQVMT-KRCPDSTRPETVRPCFLP 134
Cdd:pfam19030    1 WVAGPWGECS-----------------VTCGGGVQTRLVQCVQKGGGSIVPdSECSAQKKPPETQSCNLK 53
TSP1_ADAMTS super family cl40597
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 463-523 4.22e-07

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


The actual alignment was detected with superfamily member pfam19030:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 4.22e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462577501  463 WVVEHWSSCkinnelrSLRCGGGTQSRKIRCVNTADGEggAVDSNLCNQDEIPPETQSCSL 523
Cdd:pfam19030    1 WVAGPWGEC-------SVTCGGGVQTRLVQCVQKGGGS--IVPDSECSAQKKPPETQSCNL 52
TSP1_spondin super family cl46269
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 529-575 2.45e-06

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


The actual alignment was detected with superfamily member pfam19028:

Pssm-ID: 480609  Cd Length: 52  Bit Score: 45.35  E-value: 2.45e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2462577501  529 CVMSEWGLWSKCPQSCDPhTMQRRTRHLLRPSLNS-RTCAEDSQVQPC 575
Cdd:pfam19028    1 CVVSEWSEWSECSVTCGG-GVQTRTRTVIVEPQNGgRPCPELLERRPC 47
 
Name Accession Description Interval E-value
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 3-61 2.55e-14

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 68.07  E-value: 2.55e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2462577501    3 CVLSEWTEWSSCSQSCsnknSDGKQTRSRTILALAGEGGKPCPPsqaLQEHRLCNDHSC 61
Cdd:pfam19028    1 CVVSEWSEWSECSVTC----GGGVQTRTRTVIVEPQNGGRPCPE---LLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 649-702 1.60e-13

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 65.76  E-value: 1.60e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2462577501  649 CQLSGWTAWTECSQTCGhGGRMSRTRFIIMPTQGEGRPCPtELTQEKTCPVTPC 702
Cdd:pfam19028    1 CVVSEWSEWSECSVTCG-GGVQTRTRTVIVEPQNGGRPCP-ELLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 772-831 6.11e-10

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 55.75  E-value: 6.11e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462577501  772 CHLTEWSEWSTCELTCidgrsfeTVGRQSRSRTFIIQSFENQDSCPQQvLETRPCTGGKC 831
Cdd:pfam19028    1 CVVSEWSEWSECSVTC-------GGGVQTRTRTVIVEPQNGGRPCPEL-LERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 139-190 1.34e-09

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 54.59  E-value: 1.34e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2462577501  139 CIVTAFSEWTPCPRMCQAGnatvKQSRYRIIIQEAANGGQECPDTLyEEREC 190
Cdd:pfam19028    1 CVVSEWSEWSECSVTCGGG----VQTRTRTVIVEPQNGGRPCPELL-ERRPC 47
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 66-134 3.46e-07

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 3.46e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462577501   66 WETSPWGPCSedtlvtalnatigwngeATCGVGIQTRRVFCVKSHVGQVMT-KRCPDSTRPETVRPCFLP 134
Cdd:pfam19030    1 WVAGPWGECS-----------------VTCGGGVQTRLVQCVQKGGGSIVPdSECSAQKKPPETQSCNLK 53
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 463-523 4.22e-07

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 4.22e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462577501  463 WVVEHWSSCkinnelrSLRCGGGTQSRKIRCVNTADGEggAVDSNLCNQDEIPPETQSCSL 523
Cdd:pfam19030    1 WVAGPWGEC-------SVTCGGGVQTRLVQCVQKGGGS--IVPDSECSAQKKPPETQSCNL 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 529-575 2.45e-06

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 45.35  E-value: 2.45e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2462577501  529 CVMSEWGLWSKCPQSCDPhTMQRRTRHLLRPSLNS-RTCAEDSQVQPC 575
Cdd:pfam19028    1 CVVSEWSEWSECSVTCGG-GVQTRTRTVIVEPQNGgRPCPELLERRPC 47
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 652-702 2.74e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 42.57  E-value: 2.74e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 2462577501   652 SGWTAWTECSQTCGhGGRMSRTRFIIMPT-QGEGRPCPTELTQEKTCPVTPC 702
Cdd:smart00209    2 SEWSEWSPCSVTCG-GGVQTRTRSCCSPPpQNGGGPCTGEDVETRACNEQPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 603-701 4.77e-05

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 47.27  E-value: 4.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462577501  603 GQGVR---TRLLS-CVCSDGKP---VSMDQCEQHNLEKPQRMSIPCLVECVVNCQLsgWTAWTECSQTCGHGGRmSRTRf 675
Cdd:PTZ00441   187 GQGINhqfNRLLAgCRPREGKCkfySDADWEEAKNLIKPFIAKVCTEVERTASCGP--WDEWTPCSVTCGKGTH-SRSR- 262

                           90       100
                   ....*....|....*....|....*....
gi 2462577501  676 iimPTQGEGrpCPTELT---QEKTCPVTP 701
Cdd:PTZ00441   263 ---PILHEG--CTTHMVeecEEEECPVEP 286
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 6-61 8.41e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 41.03  E-value: 8.41e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462577501     6 SEWTEWSSCSQSCSNknsdGKQTRSRT-ILALAGEGGKPCPPSQalQEHRLCNDHSC 61
Cdd:smart00209    2 SEWSEWSPCSVTCGG----GVQTRTRScCSPPPQNGGGPCTGED--VETRACNEQPC 52
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 775-831 3.80e-03

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 36.41  E-value: 3.80e-03
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 2462577501   775 TEWSEWSTCELTCidgrsfeTVGRQSRSRTFI-IQSFENQDSCPQQVLETRPCTGGKC 831
Cdd:smart00209    2 SEWSEWSPCSVTC-------GGGVQTRTRSCCsPPPQNGGGPCTGEDVETRACNEQPC 52
 
Name Accession Description Interval E-value
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 3-61 2.55e-14

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 68.07  E-value: 2.55e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2462577501    3 CVLSEWTEWSSCSQSCsnknSDGKQTRSRTILALAGEGGKPCPPsqaLQEHRLCNDHSC 61
Cdd:pfam19028    1 CVVSEWSEWSECSVTC----GGGVQTRTRTVIVEPQNGGRPCPE---LLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 649-702 1.60e-13

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 65.76  E-value: 1.60e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2462577501  649 CQLSGWTAWTECSQTCGhGGRMSRTRFIIMPTQGEGRPCPtELTQEKTCPVTPC 702
Cdd:pfam19028    1 CVVSEWSEWSECSVTCG-GGVQTRTRTVIVEPQNGGRPCP-ELLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 772-831 6.11e-10

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 55.75  E-value: 6.11e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462577501  772 CHLTEWSEWSTCELTCidgrsfeTVGRQSRSRTFIIQSFENQDSCPQQvLETRPCTGGKC 831
Cdd:pfam19028    1 CVVSEWSEWSECSVTC-------GGGVQTRTRTVIVEPQNGGRPCPEL-LERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 139-190 1.34e-09

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 54.59  E-value: 1.34e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2462577501  139 CIVTAFSEWTPCPRMCQAGnatvKQSRYRIIIQEAANGGQECPDTLyEEREC 190
Cdd:pfam19028    1 CVVSEWSEWSECSVTCGGG----VQTRTRTVIVEPQNGGRPCPELL-ERRPC 47
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 66-134 3.46e-07

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 3.46e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462577501   66 WETSPWGPCSedtlvtalnatigwngeATCGVGIQTRRVFCVKSHVGQVMT-KRCPDSTRPETVRPCFLP 134
Cdd:pfam19030    1 WVAGPWGECS-----------------VTCGGGVQTRLVQCVQKGGGSIVPdSECSAQKKPPETQSCNLK 53
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 463-523 4.22e-07

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 4.22e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462577501  463 WVVEHWSSCkinnelrSLRCGGGTQSRKIRCVNTADGEggAVDSNLCNQDEIPPETQSCSL 523
Cdd:pfam19030    1 WVAGPWGEC-------SVTCGGGVQTRLVQCVQKGGGS--IVPDSECSAQKKPPETQSCNL 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 529-575 2.45e-06

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 45.35  E-value: 2.45e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2462577501  529 CVMSEWGLWSKCPQSCDPhTMQRRTRHLLRPSLNS-RTCAEDSQVQPC 575
Cdd:pfam19028    1 CVVSEWSEWSECSVTCGG-GVQTRTRTVIVEPQNGgRPCPELLERRPC 47
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 652-702 2.74e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 42.57  E-value: 2.74e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 2462577501   652 SGWTAWTECSQTCGhGGRMSRTRFIIMPT-QGEGRPCPTELTQEKTCPVTPC 702
Cdd:smart00209    2 SEWSEWSPCSVTCG-GGVQTRTRSCCSPPpQNGGGPCTGEDVETRACNEQPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 603-701 4.77e-05

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 47.27  E-value: 4.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462577501  603 GQGVR---TRLLS-CVCSDGKP---VSMDQCEQHNLEKPQRMSIPCLVECVVNCQLsgWTAWTECSQTCGHGGRmSRTRf 675
Cdd:PTZ00441   187 GQGINhqfNRLLAgCRPREGKCkfySDADWEEAKNLIKPFIAKVCTEVERTASCGP--WDEWTPCSVTCGKGTH-SRSR- 262

                           90       100
                   ....*....|....*....|....*....
gi 2462577501  676 iimPTQGEGrpCPTELT---QEKTCPVTP 701
Cdd:PTZ00441   263 ---PILHEG--CTTHMVeecEEEECPVEP 286
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 6-61 8.41e-05

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 41.03  E-value: 8.41e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462577501     6 SEWTEWSSCSQSCSNknsdGKQTRSRT-ILALAGEGGKPCPPSQalQEHRLCNDHSC 61
Cdd:smart00209    2 SEWSEWSPCSVTCGG----GVQTRTRScCSPPPQNGGGPCTGED--VETRACNEQPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
652-702 1.81e-04

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 40.09  E-value: 1.81e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2462577501  652 SGWTAWTECSQTCGHGGRMsRTRFIIMPTQGeGRPCPTELTQEKTCPVTPC 702
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQV-RQRTCKSPFPG-GEPCTGDDIETQACKMDKC 49
TSP_1 pfam00090
Thrombospondin type 1 domain;
6-61 1.55e-03

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 37.40  E-value: 1.55e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462577501    6 SEWTEWSSCSQSCSNknsdGKQTRSRTILALAgEGGKPCPPSQalQEHRLCNDHSC 61
Cdd:pfam00090    1 SPWSPWSPCSVTCGK----GIQVRQRTCKSPF-PGGEPCTGDD--IETQACKMDKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 775-831 3.80e-03

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 36.41  E-value: 3.80e-03
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 2462577501   775 TEWSEWSTCELTCidgrsfeTVGRQSRSRTFI-IQSFENQDSCPQQVLETRPCTGGKC 831
Cdd:smart00209    2 SEWSEWSPCSVTC-------GGGVQTRTRSCCsPPPQNGGGPCTGEDVETRACNEQPC 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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