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Conserved domains on  [gi|2462610720|ref|XP_054212469|]
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uncharacterized protein C6orf62 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4566 super family cl20998
Domain of unknown function (DUF4566); This family of proteins is functionally uncharacterized. ...
1-143 1.38e-91

Domain of unknown function (DUF4566); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. This family includes human protein C6orf62.


The actual alignment was detected with superfamily member pfam15130:

Pssm-ID: 405765  Cd Length: 226  Bit Score: 265.60  E-value: 1.38e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462610720   1 MGDPNSRKKQALNRLRAQLRKKKESLADQFDFKMYIAFVFKEKKKKSALFEVSEVIPVMTNNYEENILKGVRDSSYSLES 80
Cdd:pfam15130   1 MGDPHNRKNLAVNRLRNQLRKKRESLADQFDFKMYIVFVFKDKKKSPALFEVSEVIPVMTNNYEDCILKGVQDKAYSLES 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462610720  81 SLELLQKDVVQLHAPRYQSMRRDVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFRPVQ 143
Cdd:pfam15130  81 SQELLEKDVVQLHAPRYHPMRRDIIGCTQDVDFLLWPRNDIEKIVCRLFSRWKGEDMSFRPVQ 143
 
Name Accession Description Interval E-value
DUF4566 pfam15130
Domain of unknown function (DUF4566); This family of proteins is functionally uncharacterized. ...
1-143 1.38e-91

Domain of unknown function (DUF4566); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. This family includes human protein C6orf62.


Pssm-ID: 405765  Cd Length: 226  Bit Score: 265.60  E-value: 1.38e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462610720   1 MGDPNSRKKQALNRLRAQLRKKKESLADQFDFKMYIAFVFKEKKKKSALFEVSEVIPVMTNNYEENILKGVRDSSYSLES 80
Cdd:pfam15130   1 MGDPHNRKNLAVNRLRNQLRKKRESLADQFDFKMYIVFVFKDKKKSPALFEVSEVIPVMTNNYEDCILKGVQDKAYSLES 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462610720  81 SLELLQKDVVQLHAPRYQSMRRDVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFRPVQ 143
Cdd:pfam15130  81 SQELLEKDVVQLHAPRYHPMRRDIIGCTQDVDFLLWPRNDIEKIVCRLFSRWKGEDMSFRPVQ 143
 
Name Accession Description Interval E-value
DUF4566 pfam15130
Domain of unknown function (DUF4566); This family of proteins is functionally uncharacterized. ...
1-143 1.38e-91

Domain of unknown function (DUF4566); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. This family includes human protein C6orf62.


Pssm-ID: 405765  Cd Length: 226  Bit Score: 265.60  E-value: 1.38e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462610720   1 MGDPNSRKKQALNRLRAQLRKKKESLADQFDFKMYIAFVFKEKKKKSALFEVSEVIPVMTNNYEENILKGVRDSSYSLES 80
Cdd:pfam15130   1 MGDPHNRKNLAVNRLRNQLRKKRESLADQFDFKMYIVFVFKDKKKSPALFEVSEVIPVMTNNYEDCILKGVQDKAYSLES 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462610720  81 SLELLQKDVVQLHAPRYQSMRRDVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFRPVQ 143
Cdd:pfam15130  81 SQELLEKDVVQLHAPRYHPMRRDIIGCTQDVDFLLWPRNDIEKIVCRLFSRWKGEDMSFRPVQ 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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