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Conserved domains on  [gi|2462622876|ref|XP_054218067|]
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tetratricopeptide repeat protein 16 isoform X4 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 64-359 8.21e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 8.21e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG2956    84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 224 YRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDG 303
Cdd:COG2956   164 IEALEKALKLDPDCARALLLLAE-------------LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622876 304 AVEDFLKVLDmvtEDQEDMVRQAQRQLLLtyndfavhcyRQGAYQEGVLLLNKALR 359
Cdd:COG2956   231 ALELLRKALE---LDPSDDLLLALADLLE----------RKEGLEAALALLERQLR 273
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 373-659 1.98e-03

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  373 GSSRRQRTTSPRPSGTTPRRPSTTctgPRAGSCCRTflGPARMWPLSC---SSTPSNQRMLKRHELERQKALALQHSWkQ 449
Cdd:PHA03307    98 ASPAREGSPTPPGPSSPDPPPPTP---PPASPPPSP--APDLSEMLRPvgsPGPPPAASPPAAGASPAAVASDAASSR-Q 171

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  450 GEPLIATSEELKATPEIPQVKPGSSEGEAEAPEEEEEKEKEKKGEYRS-------TSATAVTFSDSSLLKTQSSDSGN-- 520
Cdd:PHA03307   172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSpapapgrSAADDAGASSSDSSSSESSGCGWgp 251

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  521 -NREALSHGPRKIKATQGQRQSLSKTEPTQSQRRNSSKTKATIHKR---NSSKTKATQSQRRNSSKtRATQGQGQSSSKT 596
Cdd:PHA03307   252 eNECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSpspSSPGSGPAPSSPRASSS-SSSSRESSSSSTS 330

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622876  597 EATQGQRQSSSEI---EATQGPRQEPSKTKTTRSPRQRPRkvKAARGRSWRPSKVDATQGRSRGLL 659
Cdd:PHA03307   331 SSSESSRGAAVSPgpsPSRSPSPSRPPPPADPSSPRKRPR--PSRAPSSPAASAGRPTRRRARAAV 394
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 64-359 8.21e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 8.21e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG2956    84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 224 YRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDG 303
Cdd:COG2956   164 IEALEKALKLDPDCARALLLLAE-------------LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622876 304 AVEDFLKVLDmvtEDQEDMVRQAQRQLLLtyndfavhcyRQGAYQEGVLLLNKALR 359
Cdd:COG2956   231 ALELLRKALE---LDPSDDLLLALADLLE----------RKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 50-359 3.53e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 66.65  E-value: 3.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  50 PKVTGLTVPL---------KVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRR 120
Cdd:TIGR02917   2 IKITALLCIAlalsacgdqSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 121 AYSLQQDNCKHLERLTFVLYLQGQclfeqcafldalnvFSHAAELQPEKPCFRYRCMACLLALKQHqACLTLITNELKQD 200
Cdd:TIGR02917  82 ALSLGYPKNQVLPLLARAYLLQGK--------------FQQVLDELPGKTLLDDEGAAELLALRGL-AYLGLGQLELAQK 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 201 TTNADVYIFRARLYNFLQKPHL--CYRDLHSA-------LLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHAL 271
Cdd:TIGR02917 147 SYEQALAIDPRSLYAKLGLAQLalAENRFDEAralidevLTADPGNVDALLLK-------------GDLLLSLGNIELAL 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 272 QRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAvedflkvldmvTEDQEDMVRQAQRQLLLTYNDFAVHcYRQGAYQEGV 351
Cdd:TIGR02917 214 AAYRKAIALRPNNIAVLLALATILIEAGEFEEA-----------EKHADALLKKAPNSPLAHYLKALVD-FQKKNYEDAR 281


                  ....*...
gi 2462622876 352 LLLNKALR 359
Cdd:TIGR02917 282 ETLQDALK 289
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 63-144 5.57e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 48.78  E-value: 5.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQ 142
Cdd:cd24142     2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-------GYEKYLY 74


                  ...
gi 2462622876 143 -GQ 144
Cdd:cd24142    75 lGQ 77
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 76-124 2.61e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.01  E-value: 2.61e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2462622876  76 DWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSL 124
Cdd:PLN03088   17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL 65
TPR_11 pfam13414
TPR repeat;
62-108 1.01e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.45  E-value: 1.01e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2462622876  62 REYYSRGQqcleqadWETAVLLFSRALHLDPQLVDFYALRAEAYLQL 108
Cdd:pfam13414   2 DAYYEQGK-------YEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 373-659 1.98e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  373 GSSRRQRTTSPRPSGTTPRRPSTTctgPRAGSCCRTflGPARMWPLSC---SSTPSNQRMLKRHELERQKALALQHSWkQ 449
Cdd:PHA03307    98 ASPAREGSPTPPGPSSPDPPPPTP---PPASPPPSP--APDLSEMLRPvgsPGPPPAASPPAAGASPAAVASDAASSR-Q 171

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  450 GEPLIATSEELKATPEIPQVKPGSSEGEAEAPEEEEEKEKEKKGEYRS-------TSATAVTFSDSSLLKTQSSDSGN-- 520
Cdd:PHA03307   172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSpapapgrSAADDAGASSSDSSSSESSGCGWgp 251

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  521 -NREALSHGPRKIKATQGQRQSLSKTEPTQSQRRNSSKTKATIHKR---NSSKTKATQSQRRNSSKtRATQGQGQSSSKT 596
Cdd:PHA03307   252 eNECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSpspSSPGSGPAPSSPRASSS-SSSSRESSSSSTS 330

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622876  597 EATQGQRQSSSEI---EATQGPRQEPSKTKTTRSPRQRPRkvKAARGRSWRPSKVDATQGRSRGLL 659
Cdd:PHA03307   331 SSSESSRGAAVSPgpsPSRSPSPSRPPPPADPSSPRKRPR--PSRAPSSPAASAGRPTRRRARAAV 394
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 64-359 8.21e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 8.21e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG2956    84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 224 YRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDG 303
Cdd:COG2956   164 IEALEKALKLDPDCARALLLLAE-------------LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622876 304 AVEDFLKVLDmvtEDQEDMVRQAQRQLLLtyndfavhcyRQGAYQEGVLLLNKALR 359
Cdd:COG2956   231 ALELLRKALE---LDPSDDLLLALADLLE----------RKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
64-280 1.16e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 74.27  E-value: 1.16e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEALNNLG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG0457    84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622876 224 YRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIEN 280
Cdd:COG0457   164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
88-364 3.96e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 72.73  E-value: 3.96e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  88 LHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclFEQcafldALNVFSHAAELQP 167
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR--YEE-----ALADYEQALELDP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 168 EkpcfryrcmacllalkqhqacltlitnelkqdttNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKm 247
Cdd:COG0457    74 D----------------------------------DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGL- 118

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 248 vaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDmvTEDQEDMVRQAQ 327
Cdd:COG0457   119 ------------ALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA--AALAALLAAALG 184

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2462622876 328 RQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQE 364
Cdd:COG0457   185 EAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
164-367 6.14e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 6.14e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 164 ELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARML 243
Cdd:COG0457     2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 244 LqkmvaqaqqarqdaG-ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDM 322
Cdd:COG0457    82 L--------------GlALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADAL 147

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2462622876 323 VRQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGL 367
Cdd:COG0457   148 YNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 60-188 8.20e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.37  E-value: 8.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  60 KVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVL 139
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-------PEAR 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2462622876 140 YLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQA 188
Cdd:COG4783    76 LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
197-372 9.02e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.88  E-value: 9.02e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 197 LKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHALQRINR 276
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL-------------GLAYLRLGRYEEALADYEQ 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 277 AIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAVHCYRQGAYQEGVLLLNK 356
Cdd:COG0457    68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------------ALYNLGLALLELGRYDEAIEAYER 135

                         170
                  ....*....|....*.
gi 2462622876 357 ALRDEQQEKGLYINRG 372
Cdd:COG0457   136 ALELDPDDADALYNLG 151
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 62-214 1.26e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 68.10  E-value: 1.26e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  62 REYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDnckHLErltfVLYL 141
Cdd:COG3914    79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD---FAE----AYLN 151

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462622876 142 QGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLY 214
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 50-359 3.53e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 66.65  E-value: 3.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  50 PKVTGLTVPL---------KVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRR 120
Cdd:TIGR02917   2 IKITALLCIAlalsacgdqSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 121 AYSLQQDNCKHLERLTFVLYLQGQclfeqcafldalnvFSHAAELQPEKPCFRYRCMACLLALKQHqACLTLITNELKQD 200
Cdd:TIGR02917  82 ALSLGYPKNQVLPLLARAYLLQGK--------------FQQVLDELPGKTLLDDEGAAELLALRGL-AYLGLGQLELAQK 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 201 TTNADVYIFRARLYNFLQKPHL--CYRDLHSA-------LLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHAL 271
Cdd:TIGR02917 147 SYEQALAIDPRSLYAKLGLAQLalAENRFDEAralidevLTADPGNVDALLLK-------------GDLLLSLGNIELAL 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 272 QRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAvedflkvldmvTEDQEDMVRQAQRQLLLTYNDFAVHcYRQGAYQEGV 351
Cdd:TIGR02917 214 AAYRKAIALRPNNIAVLLALATILIEAGEFEEA-----------EKHADALLKKAPNSPLAHYLKALVD-FQKKNYEDAR 281


                  ....*...
gi 2462622876 352 LLLNKALR 359
Cdd:TIGR02917 282 ETLQDALK 289
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 190-327 8.21e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.02  E-value: 8.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 190 LTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQH 269
Cdd:COG4235     3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL-------------AEALLAAGDTEE 69

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622876 270 ALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQ 327
Cdd:COG4235    70 AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
58-211 9.12e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.54  E-value: 9.12e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTF 137
Cdd:COG4785    70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY-------AY 142

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462622876 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLIT-----NELKQDTTNADVYIFRA 211
Cdd:COG4785   143 AYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEdwataYLLQGDTEEARELFKLA 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
64-233 1.61e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 1.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQG 143
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 144 QclfeqcaFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG0457   159 R-------YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231

                         170
                  ....*....|
gi 2462622876 224 YRDLHSALLL 233
Cdd:COG0457   232 ALRLAALALY 241
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 58-181 2.10e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.78  E-value: 2.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKhlerltf 137
Cdd:COG3914   109 PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------- 181

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2462622876 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLL 181
Cdd:COG3914   182 ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALR 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 64-200 7.81e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.43  E-value: 7.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQG 143
Cdd:COG2956   147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622876 144 QclfeqcaFLDALNVFSHAAELQPEKPCFRYRCMAcLLALKQHQACLTLITNELKQD 200
Cdd:COG2956   227 D-------PEEALELLRKALELDPSDDLLLALADL-LERKEGLEAALALLERQLRRH 275
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 72-167 9.13e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.97  E-value: 9.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqca 151
Cdd:COG5010    65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ------- 137

                          90
                  ....*....|....*.
gi 2462622876 152 FLDALNVFSHAAELQP 167
Cdd:COG5010   138 DDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 63-244 1.45e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 1.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQ 142
Cdd:COG3914    46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 143 GQclfeqcaFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHL 222
Cdd:COG3914   126 GR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                         170       180
                  ....*....|....*....|..
gi 2462622876 223 CYRDLHSALLLNPKHPQARMLL 244
Cdd:COG3914   199 AIAAYRRALELDPDNADAHSNL 220
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 80-213 1.66e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 1.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  80 AVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQGQCLFEQCAFLDALNVF 159
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------ADALLDLAEALLAAGDTEEAEELL 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2462622876 160 SHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARL 213
Cdd:COG4235    75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 64-168 1.74e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 1.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALYLLG 92

                          90       100
                  ....*....|....*....|....*
gi 2462622876 144 QCLFEQCAFLDALNVFSHAAELQPE 168
Cdd:COG4235    93 LAAFQQGDYAEAIAAWQKLLALLPA 117
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 204-364 4.14e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 4.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 204 ADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPL 283
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGE-------------ILLQLGDLDEAIVLLHEALELDPD 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 284 DPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAqrQLLltyndfavhcYRQGAYQEGVLLLNKALRDEQQ 363
Cdd:COG4783    71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLA--RAY----------RALGRPDEAIAALEKALELDPD 138


                  .
gi 2462622876 364 E 364
Cdd:COG4783   139 D 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
264-379 4.82e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.15  E-value: 4.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 264 QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAqrqllLTYndfavhcYR 343
Cdd:COG4785    86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG-----IAL-------YY 153

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2462622876 344 QGAYQEGVLLLNKALRDEQQEKGLYINRGGSSRRQR 379
Cdd:COG4785   154 LGRYELAIADLEKALELDPNDPERALWLYLAERKLD 189
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
72-168 5.31e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.94  E-value: 5.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQnLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqca 151
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD------- 74

                          90
                  ....*....|....*..
gi 2462622876 152 FLDALNVFSHAAELQPE 168
Cdd:COG3063    75 YDEALAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
203-359 1.03e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.38  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 203 NADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdaGI-LAVQGKLQHALQRINRAIENN 281
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNR--------------GLaYLLLGDYDAALEDFDRALELD 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 282 PLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQLLLTYN--------DFAVHCYRQGAYQEGVLL 353
Cdd:COG4785   138 PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEkalallleDWATAYLLQGDTEEAREL 217


                  ....*.
gi 2462622876 354 LNKALR 359
Cdd:COG4785   218 FKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 260-372 1.92e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 260 ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAV 339
Cdd:COG4783    13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE------------ARLNLGL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2462622876 340 HCYRQGAYQEGVLLLNKALRDEQQEKGLYINRG 372
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLA 113
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 138-282 2.31e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 2.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFL 217
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462622876 218 QKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNP 282
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLAR-------------AYRALGRPDEAIAALEKALELDP 137
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 204-361 3.70e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 3.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 204 ADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIENNPL 283
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622876 284 DPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAVHCYRQGAYQEGVLLLNKALRDE 361
Cdd:COG5010    87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------------AYSNLAALLLSLGQDDEAKAALQRALGTS 152
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 141-359 3.85e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.38  E-value: 3.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 141 LQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELkQDTTNADVYIFRARLYNFLQKP 220
Cdd:COG3914     6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLAL-AAGEAAAAAAALLLLAALLELA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 221 HLCYRDLHS----------ALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHALQRINRAIENNPLDPSLFLF 290
Cdd:COG3914    85 ALLLQALGRyeealalyrrALALNPDNAEALFNL-------------GNLLLALGRLEEALAALRRALALNPDFAEAYLN 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462622876 291 RGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqAQRQLlltyndfAVHCYRQGAYQEGVLLLNKALR 359
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDPDNAE-----ALNNL-------GNALQDLGRLEEAIAAYRRALE 208
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 64-143 4.27e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.99  E-value: 4.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQG 143
Cdd:COG3914   149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
78-244 5.04e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.37  E-value: 5.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  78 ETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAyslqqdnckhlerltFVLYLQGQCLFEQCAFLDALN 157
Cdd:COG4785    30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLA---------------QLYYERGVAYDSLGDYDLAIA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 158 VFSHAAELQPEKP-CFRYRCMAcLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPK 236
Cdd:COG4785    95 DFDQALELDPDLAeAYNNRGLA-YLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173


                  ....*...
gi 2462622876 237 HPQARMLL 244
Cdd:COG4785   174 DPERALWL 181
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 63-144 5.57e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 48.78  E-value: 5.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQ 142
Cdd:cd24142     2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-------GYEKYLY 74


                  ...
gi 2462622876 143 -GQ 144
Cdd:cd24142    75 lGQ 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 58-143 7.27e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 7.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTF 137
Cdd:COG2956   175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254


                  ....*.
gi 2462622876 138 VLYLQG 143
Cdd:COG2956   255 LERKEG 260
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 270-368 1.58e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 1.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 270 ALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQllltyndfavhcYRQGAYQE 349
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL------------LAAGDTEE 69

                          90       100
                  ....*....|....*....|
gi 2462622876 350 GVLLLNKALR-DEQQEKGLY 368
Cdd:COG4235    70 AEELLERALAlDPDNPEALY 89
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-311 1.73e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 1.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  42 FQSICDVKPKVTGLTVPLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVdfYALRAEAYLQLC--DFSSAAQNLR 119
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL--YAKLGLAQLALAenRFDEARALID 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 120 RAYSLQQDNCKhlerltfVLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQ 199
Cdd:TIGR02917 184 EVLTADPGNVD-------ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKK 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 200 DTTNADVYIFRArLYNFLQKPHLCYRD-LHSALLLNP-----------------KHPQARMLLQKMVAQAQQARQDAGIL 261
Cdd:TIGR02917 257 APNSPLAHYLKA-LVDFQKKNYEDAREtLQDALKSAPeylpalllagaseyqlgNLEQAYQYLNQILKYAPNSHQARRLL 335

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2462622876 262 AV----QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKV 311
Cdd:TIGR02917 336 ASiqlrLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 139-247 7.81e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 7.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 139 LYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQ 218
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                          90       100
                  ....*....|....*....|....*....
gi 2462622876 219 KPHLCYRDLHSALLLNPKHPQARMLLQKM 247
Cdd:COG4235   100 DYAEAIAAWQKLLALLPADAPARLLEASI 128
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 64-125 1.29e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 1.29e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQ 125
Cdd:COG5010    91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 101-178 2.10e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.16  E-value: 2.10e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622876 101 RAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLtfvlylqGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMA 178
Cdd:cd24142     6 KAEELLDQGNFELALKFLQRALELEPNNVEALELL-------GEILLELGDVEEAREVLLRAIELDPDGGYEKYLYLG 76
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 72-200 2.28e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqca 151
Cdd:COG5010    31 LAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD------- 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2462622876 152 FLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQD 200
Cdd:COG5010   104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 64-370 2.41e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.59  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  64 YYSRGQQCLEQ-ADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRrAYSLQQD-----NCKHLERL-- 135
Cdd:TIGR00990 162 YYSNRAACHNAlGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT-ASCIIDGfrneqSAQAVERLlk 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 136 TFVLYLQGQCLFEQCAFLDAlnVFSHAAELQPEKPCFRYRCMACLLALKQH----QACLTLITNELKQDTTNAD-VYIFR 210
Cdd:TIGR00990 241 KFAESKAKEILETKPENLPS--VTFVGNYLQSFRPKPRPAGLEDSNELDEEtgngQLQLGLKSPESKADESYEEaARAFE 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 211 ARLYNFLQKPHLCYRDLHSALL--LNPKHPQARMLLQKMV----AQAQQARQDAGILAVQGKLQHALQRINRAIENNPLD 284
Cdd:TIGR00990 319 KALDLGKLGEKEAIALNLRGTFkcLKGKHLEALADLSKSIeldpRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 285 PSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTE-------------------DQEDMVRQAQRQLLLT---YNDFAVHCY 342
Cdd:TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDfifshiqlgvtqykegsiaSSMATFRRCKKNFPEApdvYNYYGELLL 478

                         330       340
                  ....*....|....*....|....*...
gi 2462622876 343 RQGAYQEGVLLLNKALRDEQQEKGLYIN 370
Cdd:TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMN 506
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 76-124 2.61e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.01  E-value: 2.61e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2462622876  76 DWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSL 124
Cdd:PLN03088   17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL 65
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 64-128 2.83e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 2.83e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDN 128
Cdd:COG4235    54 LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
213-314 2.85e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.54  E-value: 2.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 213 LYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQrINRAIENNPLDPSLFLFRG 292
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGL-------------LLLEQGRYDEAIA-LEKALKLDPNNAEALLNLA 66

                          90       100
                  ....*....|....*....|..
gi 2462622876 293 TMYRRLQEFDGAVEDFLKVLDM 314
Cdd:COG3063    67 ELLLELGDYDEALAYLERALEL 88
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 260-372 3.07e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.21  E-value: 3.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 260 ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAV 339
Cdd:COG3914    87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------------AYLNLGE 154

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2462622876 340 HCYRQGAYQEGVLLLNKALRDEQQEKGLYINRG 372
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
264-359 3.63e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 264 QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAvEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAVHCYR 343
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAE------------ALLNLAELLLE 71

                          90
                  ....*....|....*.
gi 2462622876 344 QGAYQEGVLLLNKALR 359
Cdd:COG3063    72 LGDYDEALAYLERALE 87
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 58-279 6.98e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 43.05  E-value: 6.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTF 137
Cdd:TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 138 VLYLQG-----QCLFEQCA--FLDALNVFSHAAELQPEKPCFRYrcmacllALKQHQACLTLiTNELKQDTTNADVYIFR 210
Cdd:TIGR00990 442 TQYKEGsiassMATFRRCKknFPEAPDVYNYYGELLLDQNKFDE-------AIEKFDTAIEL-EKETKPMYMNVLPLINK 513

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462622876 211 ARLY-----NFLQKPHLCYRdlhsALLLNPKHPQARMLLQKMvaqaqqarqdagiLAVQGKLQHALQRINRAIE 279
Cdd:TIGR00990 514 ALALfqwkqDFIEAENLCEK----ALIIDPECDIAVATMAQL-------------LLQQGDVDEALKLFERAAE 570
TPR_11 pfam13414
TPR repeat;
62-108 1.01e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.45  E-value: 1.01e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2462622876  62 REYYSRGQqcleqadWETAVLLFSRALHLDPQLVDFYALRAEAYLQL 108
Cdd:pfam13414   2 DAYYEQGK-------YEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 64-128 1.10e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 1.10e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462622876  64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDN 128
Cdd:COG4783    75 RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 373-659 1.98e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  373 GSSRRQRTTSPRPSGTTPRRPSTTctgPRAGSCCRTflGPARMWPLSC---SSTPSNQRMLKRHELERQKALALQHSWkQ 449
Cdd:PHA03307    98 ASPAREGSPTPPGPSSPDPPPPTP---PPASPPPSP--APDLSEMLRPvgsPGPPPAASPPAAGASPAAVASDAASSR-Q 171

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  450 GEPLIATSEELKATPEIPQVKPGSSEGEAEAPEEEEEKEKEKKGEYRS-------TSATAVTFSDSSLLKTQSSDSGN-- 520
Cdd:PHA03307   172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSpapapgrSAADDAGASSSDSSSSESSGCGWgp 251

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876  521 -NREALSHGPRKIKATQGQRQSLSKTEPTQSQRRNSSKTKATIHKR---NSSKTKATQSQRRNSSKtRATQGQGQSSSKT 596
Cdd:PHA03307   252 eNECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSpspSSPGSGPAPSSPRASSS-SSSSRESSSSSTS 330

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622876  597 EATQGQRQSSSEI---EATQGPRQEPSKTKTTRSPRQRPRkvKAARGRSWRPSKVDATQGRSRGLL 659
Cdd:PHA03307   331 SSSESSRGAAVSPgpsPSRSPSPSRPPPPADPSSPRKRPR--PSRAPSSPAASAGRPTRRRARAAV 394
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 178-283 8.57e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 8.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622876 178 ACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqd 257
Cdd:COG5010    62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAA----------- 130

                          90       100
                  ....*....|....*....|....*.
gi 2462622876 258 agILAVQGKLQHALQRINRAIENNPL 283
Cdd:COG5010   131 --LLLSLGQDDEAKAALQRALGTSPL 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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