|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-752 |
5.35e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 5.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 56 HNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEaglgRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQ 135
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLE----VSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 136 TSQQKWKEECRRFEHDLEERDNMIQNCNR---EYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQT 212
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 213 SELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFnsEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEF 292
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREEL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 293 KEVESAYEREKHNAQESFAKLNLLE-----KEYFSKNKKLNEDIEEQKKVIID-------------------LSKRLQY- 347
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLErlqenLEGFSEGVKALLKNQSGLSGILGvlselisvdegyeaaieaaLGGRLQAv 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 348 ---NEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDK-PPSFSVVLE-RLRRTL--TD 420
Cdd:TIGR02168 551 vveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfDPKLRKALSyLLGGVLvvDD 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 421 YQNKLEDASNELNSMNDV----------------KEKACNELDSTKQKIDSHTKNIK-------ELQDKLADVNKELSHL 477
Cdd:TIGR02168 631 LDNALELAKKLRPGYRIVtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEeleekiaELEKALAELRKELEEL 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 478 HTKCADREAL---ISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGM 554
Cdd:TIGR02168 711 EEELEQLRKEleeLSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 555 LDKFswSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQEDTftkvaeqikaqescwHRQKKELELQ 634
Cdd:TIGR02168 791 IEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL---------------EEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 635 yselflevqkraqkfQEIAEKNMEKLN-HIEKSHEQLVlensHFKKLLSQTQREQMSLLAACALMAGALYPLYSRSCALS 713
Cdd:TIGR02168 854 ---------------IESLAAEIEELEeLIEELESELE----ALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 2462623292 714 TQRDFLQEQVNTFEL----FKLEIRTLAQALSTVEEKKQEEAK 752
Cdd:TIGR02168 915 RELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAE 957
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-474 |
4.47e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 4.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 62 SYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKw 141
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL- 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 142 KEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQR 221
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 222 EERLRKEFEATTLRVRKLEENIEAeraahleskfnseiiqlrirdLEGALQVEKASQAEAVADLEIIKNEFKEVESAyer 301
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIES---------------------LAAEIEELEELIEELESELEALLNERASLEEA--- 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 302 ekhnaqesfakLNLLEKEYFSKNKKLNEdieeqkkviidLSKRLQYNEKSCSELQEELVMAKKHQAFLvetcENnvkELE 381
Cdd:TIGR02168 889 -----------LALLRSELEELSEELRE-----------LESKRSELRRELEELREKLAQLELRLEGL----EV---RID 939
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 382 SILDSFTVSGQWTSGIHKDKDKPPSFSvvLERLRRTLTDYQNKLEDASN-ELNSMNDVKE----------------KACN 444
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEALENKIEDD--EEEARRRLKRLENKIKELGPvNLAAIEEYEElkerydfltaqkedltEAKE 1017
|
410 420 430
....*....|....*....|....*....|
gi 2462623292 445 ELDSTKQKIDSHTKNikELQDKLADVNKEL 474
Cdd:TIGR02168 1018 TLEEAIEEIDREARE--RFKDTFDQVNENF 1045
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
64-369 |
2.86e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 2.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 64 ESQIAKLRSEVEKgeALR-QSLEYDLAVARKE-AGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKW 141
Cdd:COG1196 199 ERQLEPLERQAEK--AERyRELKEELKELEAElLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 142 KEECRRFEH---DLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFS 218
Cdd:COG1196 277 EELELELEEaqaEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 219 TQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESA 298
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462623292 299 YEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFL 369
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
151-754 |
6.44e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 6.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 151 DLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRK--- 227
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElke 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 228 EFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEgalqvekasqaEAVADLEiiknEFKEVESAYEREKHNAQ 307
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-----------EKVKELK----ELKEKAEEYIKLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 308 ESFAKLNLLEKEYFSKNKKLNEdIEEQKKVIIDLSKRLQYNEKSCSELQEEL-VMAKKHQAFlvETCENNVKELESILDS 386
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEING-IEERIKELEEKEERLEELKKKLKELEKRLeELEERHELY--EEAKAKKEELERLKKR 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 387 FTVsgqwtsgihKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKI--------DSHTK 458
Cdd:PRK03918 381 LTG---------LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgreltEEHRK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 459 NI-KELQDKLADVNKELSHLhtkcADREALISTLKVELQNVLHCWE---KEKAQAAQSESELQKLSQAFHKDAEEKLTFL 534
Cdd:PRK03918 452 ELlEEYTAELKRIEKELKEI----EEKERKLRKELRELEKVLKKESeliKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 535 HTLYQHLVAgcvLIKQPEGMLDKFswselcavlqENVDALIADLNRANEKIRHLEyicKNKSDTMRELQQTQEDTFTKVA 614
Cdd:PRK03918 528 EKLKEKLIK---LKGEIKSLKKEL----------EKLEELKKKLAELEKKLDELE---EELAELLKELEELGFESVEELE 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 615 EQIKAQESCWhrqKKELELQYSELFLEV-QKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQ-----REQ 688
Cdd:PRK03918 592 ERLKELEPFY---NEYLELKDAEKELEReEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyeelrEEY 668
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462623292 689 MSLLAACALMAGALYPLYSRSCALSTQRDFLQEQVNTFELFKLEIRTLAQALSTVEEKKQEEAKMK 754
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
418-1161 |
9.66e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 9.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 418 LTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQN 497
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 498 VLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKltflhtlyqhlvagcvlikqpegmldkfswselcAVLQENVDALIAD 577
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKL----------------------------------EELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 578 LNRANEKIRHLEyickNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELElqyselflEVQKRAQKFQEIAEKNM 657
Cdd:TIGR02168 360 LEELEAELEELE----SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE--------RLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 658 EKLNHIEKSHEQLVLENShfKKLLSQTQREQMSLLAacalmagalyplysrscALSTQRDFLQEQVNTFELFKLEIRTLA 737
Cdd:TIGR02168 428 KKLEEAELKELQAELEEL--EEELEELQEELERLEE-----------------ALEELREELEEAEQALDAAERELAQLQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 738 QALSTVEEKKQEEAKmkkktfkgliriFRKGVIAVLA-ANRLKILGQSCASLFTWMESFK--------EGIGMLVCTGEP 808
Cdd:TIGR02168 489 ARLDSLERLQENLEG------------FSEGVKALLKnQSGLSGILGVLSELISVDEGYEaaieaalgGRLQAVVVENLN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 809 QDKhkfpkhqkeqlrclQALSWLTSSDLLAAiisSMAELQDVIGKADPNSR---ICGHLLIGAAKNSFAKLMDKISLVME 885
Cdd:TIGR02168 557 AAK--------------KAIAFLKQNELGRV---TFLPLDSIKGTEIQGNDreiLKNIEGFLGVAKDLVKFDPKLRKALS 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 886 ciPLHSSRSITyvekDSLVQ--RLAHGLHKVNTLALKYG---------LRGHVPITKSTASLQKQILGFTQRLHAAEVER 954
Cdd:TIGR02168 620 --YLLGGVLVV----DDLDNalELAKKLRPGYRIVTLDGdlvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKI 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 955 RSLRLEVTEFKRSVNEMKKELDKAQ----GLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQEL 1030
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRkeleELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1031 NYRLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVA-- 1108
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSed 853
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462623292 1109 --------NHMRAVENTLHKAmIKSFMDVYQLASTRIMTLEKEMTSHRSHIAALKSELHTA 1161
Cdd:TIGR02168 854 ieslaaeiEELEELIEELESE-LEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
132-363 |
1.02e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 132 KAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRR- 210
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANl 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 211 QTSELEFSTQREE----RLRKEFEATTLRVRK--LEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVAD 284
Cdd:TIGR02168 315 ERQLEELEAQLEEleskLDELAEELAELEEKLeeLKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 285 LEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKK-LNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAK 363
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
134-515 |
1.42e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 134 FQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEK----TLQEQDTAVQNMHKKVEKLETEHMDCSDLLR 209
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 210 RQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAEraahleskfnSEIIQLRIRDLEGALQVEKASQAEAVAdleiik 289
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIA------ 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 290 nefkevesAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEEL-VMAKKHQAF 368
Cdd:TIGR02169 312 --------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELeEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 369 LVETCENNVKelesildsftvsgqwtsgIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDS 448
Cdd:TIGR02169 384 RDELKDYREK------------------LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462623292 449 TKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELqnvlhcwEKEKAQAAQSESE 515
Cdd:TIGR02169 446 KALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL-------AEAEAQARASEER 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-359 |
1.73e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 92 RKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAfqtsqQKWKEECRRFEHDLEERDnmIQNCNREYDLLMK 171
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGELERQLEPLERQAEKAERY-----RELKEELKELEAELLLLK--LRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 172 EKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHL 251
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 252 ESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEiiknEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDI 331
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELA----EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260
....*....|....*....|....*...
gi 2462623292 332 EEQKKVIIDLSKRLQYNEKSCSELQEEL 359
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEAL 430
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
24-364 |
3.50e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 3.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 24 QILKNETELDITDNLRKKLHWAKKEKLEITT---KHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRR 100
Cdd:TIGR04523 298 SDLNNQKEQDWNKELKSELKNQEKKLEEIQNqisQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKK 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 101 AAEERLAEAhriqEKLCAQNSELQAKTNETEKAFQTSQQKWKEecrrFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTL 180
Cdd:TIGR04523 378 ENQSYKQEI----KNLESQINDLESKIQNQEKLNQQKDEQIKK----LQQEKELLEKEIERLKETIIKNNSEIKDLTNQD 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 181 QEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIeaeraahleSKFNSEII 260
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV---------KDLTKKIS 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 261 QLRIRdlEGALQVEKASQAEAVADLE--IIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVI 338
Cdd:TIGR04523 521 SLKEK--IEKLESEKKEKESKISDLEdeLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEK 598
|
330 340
....*....|....*....|....*.
gi 2462623292 339 IDLSKRLQYNEKSCSELQEELVMAKK 364
Cdd:TIGR04523 599 KDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
88-665 |
4.78e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 4.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 88 LAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKE--ECRRFEHDLEERDNMIQNCNRE 165
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEleKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 166 YDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdllRRQTSELEFSTQREERLRKEFEATTLRVRKLEeniea 245
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYIKLSEFYEEYLDELREIE----- 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 246 ERAAHLESKFNSeiIQLRIRDLEgalqvekasqaEAVADLEIIKNEFKEVESAYEREKHNA---QESFAKLNLLEKeyfS 322
Cdd:PRK03918 314 KRLSRLEEEING--IEERIKELE-----------EKEERLEELKKKLKELEKRLEELEERHelyEEAKAKKEELER---L 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 323 KNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLvetcENNVKELESILDSFTVSGQWTSGIHKdKD 402
Cdd:PRK03918 378 KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHR-KE 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 403 KPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKA---------CNELDSTKQKIDSH--------TKNIKELQD 465
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliklkelAEQLKELEEKLKKYnleelekkAEEYEKLKE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 466 KLADVNKELSHLHTKCADREALISTLKvELQNVLHCWEKEKAQAaqsESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGC 545
Cdd:PRK03918 533 KLIKLKGEIKSLKKELEKLEELKKKLA-ELEKKLDELEEELAEL---LKELEELGFESVEELEERLKELEPFYNEYLELK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 546 VLIKQPEGMLDKFswselcAVLQENVDALIADLNRANEKIRHLEyicknksDTMRELQQT-QEDTFTKVAEQIKAQESCW 624
Cdd:PRK03918 609 DAEKELEREEKEL------KKLEEELDKAFEELAETEKRLEELR-------KELEELEKKySEEEYEELREEYLELSREL 675
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 2462623292 625 HRQKKELElQYSELFLEVQKRAQKFQEIAEKNMEKLNHIEK 665
Cdd:PRK03918 676 AGLRAELE-ELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
27-516 |
5.18e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 5.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 27 KNETELDITDNLRKKLHWAKKEKLEITTKHNAELASYESQiaKLRSEVEKGEALRQSLEYdlavARKEAGLGRRAAEERL 106
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK--KKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKK 1458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 107 AEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQ-----KWKEECRRFEHDLEERDNMIQ-NCNREYDLLMK--EKSRLEK 178
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKaeeakKKADEAKKAAEAKKKADEAKKaEEAKKADEAKKaeEAKKADE 1538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 179 TLQEQDTAVQNMHKKVEKL-ETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKL----------------EE 241
Cdd:PTZ00121 1539 AKKAEEKKKADELKKAEELkKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLyeeekkmkaeeakkaeEA 1618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 242 NIEAE--RAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEK- 318
Cdd:PTZ00121 1619 KIKAEelKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEa 1698
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 319 EYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQ-EELVMAKKHQAFLVETCENN-----VKELESILDSFTVSGQ 392
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKkEAEEDKKKAEEAKKDEEEKKkiahlKKEEEKKAEEIRKEKE 1778
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 393 WTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNK 472
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNN 1858
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2462623292 473 ELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESEL 516
Cdd:PTZ00121 1859 ENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-465 |
7.74e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 7.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 160 QNCNREYDLLmKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCS-DLLRRQTSELEFSTQREERLRKEFEATTLRVRK 238
Cdd:TIGR02168 186 ENLDRLEDIL-NELERQLKSLERQAEKAERYKELKAELRELELALLvLRLEELREELEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 239 LEENIEAERAAHLEskfnseiIQLRIRDLEGALQVEKASQAEAVADLEIIK-------NEFKEVESAYEREKHNAQESFA 311
Cdd:TIGR02168 265 LEEKLEELRLEVSE-------LEEEIEELQKELYALANEISRLEQQKQILRerlanleRQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 312 KLNLLEKEYFSKNKK---LNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFT 388
Cdd:TIGR02168 338 ELAELEEKLEELKEElesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462623292 389 VSGQWTSGIHKDKDKPPSFSVV--LERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQD 465
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
88-358 |
9.20e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.20 E-value: 9.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 88 LAVARKEAGLGRRAAEERLaeaHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYD 167
Cdd:pfam17380 275 LHIVQHQKAVSERQQQEKF---EKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 168 LLMKE--KSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQ-TSELEFSTQREERLRK--EFEATTLRVRKLEEN 242
Cdd:pfam17380 352 RIRQEerKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQElEAARKVKILEEERQRKiqQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 243 IEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEA---VADLEIIKNEFKEVESAYEREKHNAQESFA-KLNLLEK 318
Cdd:pfam17380 432 ARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEErKQAMIEE 511
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2462623292 319 EyfSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEE 358
Cdd:pfam17380 512 E--RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
958-1158 |
1.02e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 958 RLE--VTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKL-ITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYRL 1034
Cdd:TIGR02168 190 RLEdiLNELERQLKSLERQAEKAERYKELKAELRELELaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1035 ELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANH--MR 1112
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKleEL 349
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462623292 1113 AVENTLHKAMIKSFMDVYQLASTRIMTLEKEMTSHRSHIAALKSEL 1158
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
29-531 |
1.61e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 29 ETELDITDNLRKKLHWAKKEKLEITTKHN---AELASYESQIAKLRSEVEKGEALRQSLEyDLAVARKEAGLGRRAAEER 105
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINeisSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 106 LAEAHRIQEKLCAQNSELQAKTNETEK---------AFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRL 176
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 177 EKTLQEQdtavQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESK-- 254
Cdd:PRK03918 341 EELKKKL----KELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIge 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 255 FNSEIIQLR--IRDLEGA------------------------LQVEKASQ--AEAVADLEIIKNEFKEVESAYEREKH-- 304
Cdd:PRK03918 417 LKKEIKELKkaIEELKKAkgkcpvcgrelteehrkelleeytAELKRIEKelKEIEEKERKLRKELRELEKVLKKESEli 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 305 ----------NAQESFAKLNL--LEKEY--FSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFL- 369
Cdd:PRK03918 497 klkelaeqlkELEEKLKKYNLeeLEKKAeeYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELl 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 370 ----------VETCENNVKELESILDSFTvsgqwtsgihKDKDKPPSfsvvLERLRRTLTDYQNKLEDASNELNSMNDVK 439
Cdd:PRK03918 577 keleelgfesVEELEERLKELEPFYNEYL----------ELKDAEKE----LEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 440 EKACNELDSTKQKIDShtKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHcwEKEKAQAAQSESELQKL 519
Cdd:PRK03918 643 EELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE--ELEEREKAKKELEKLEK 718
|
570
....*....|..
gi 2462623292 520 SQAFHKDAEEKL 531
Cdd:PRK03918 719 ALERVEELREKV 730
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
20-521 |
2.43e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 20 LDVKQILKNETELditdnlrKKLHWAKKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKE----- 94
Cdd:TIGR04523 114 NDKEQKNKLEVEL-------NKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEklniq 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 95 -----AGLGRRAAEERLAEAHRIQEK---LCAQNSELQAKTNETEKAFQTSQQKWKEEcrrfEHDLEERDNMIQNCNREY 166
Cdd:TIGR04523 187 knidkIKNKLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINEK----TTEISNTQTQLNQLKDEQ 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 167 DLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDC-----SDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEE 241
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnnqkeQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 242 NIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYF 321
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 322 SKNK---KLNEDIEEQKKVIIDL-----SKRLQYN--EKSCSELQEELVMAKKHQAFLVETCENNVKEL---ESILDSFT 388
Cdd:TIGR04523 423 LLEKeieRLKETIIKNNSEIKDLtnqdsVKELIIKnlDNTRESLETQLKVLSRSINKIKQNLEQKQKELkskEKELKKLN 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 389 VSGQWTSGIHKD-KDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKAC---------NELDSTKQKIDSHTK 458
Cdd:TIGR04523 503 EEKKELEEKVKDlTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlekeideknKEIEELKQTQKSLKK 582
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462623292 459 NIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQ 521
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
23-473 |
2.51e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 23 KQILKNETELDITDNLRKKLHWAKK----EKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLG 98
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKadeaKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 99 RRAAEERLAEAHRIQEKLcaQNSELQAKTNETEKAfqtsQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEK 178
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEEL--KKAEEKKKAEEAKKA----EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 179 TLQEQDTAVQnmhkKVEKLETEHMDCSDLLRRQTSElefsTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSE 258
Cdd:PTZ00121 1614 KAEEAKIKAE----ELKKAEEEKKKVEQLKKKEAEE----KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 259 iiqlrirdlegalqvEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQEsfakLNLLEKEYFSKNKKLNEDIEEQKKVI 338
Cdd:PTZ00121 1686 ---------------DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE----LKKAEEENKIKAEEAKKEAEEDKKKA 1746
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 339 IDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELEsildsftvSGQWTSGIHKDKDKPPSFSVVLERLRRTL 418
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED--------EKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2462623292 419 TDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKE 473
Cdd:PTZ00121 1819 LVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKE 1873
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
227-509 |
4.75e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 4.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 227 KEFEATTLRvRKLEENIEAER---AAHLESkFNSEIIQLRIRDLEGALQ--------VEKASQAEAVADLEIIKNEFKEV 295
Cdd:PRK05771 7 KKVLIVTLK-SYKDEVLEALHelgVVHIED-LKEELSNERLRKLRSLLTklsealdkLRSYLPKLNPLREEKKKVSVKSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 296 ESAyerekhnAQESFAKLNLLEKEYFSKNKKLNEdIEEQKKVIIDLSKRLQYNEKSCSELQEELvmAKKH-QAFLVETCE 374
Cdd:PRK05771 85 EEL-------IKDVEEELEKIEKEIKELEEEISE-LENEIKELEQEIERLEPWGNFDLDLSLLL--GFKYvSVFVGTVPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 375 NNVKELESILDSFTVsgqwtSGIHKDKDKPPSFSVVLerlrrtltdyQNKLEDASNELNSmNDVKEKACNELDSTKQKID 454
Cdd:PRK05771 155 DKLEELKLESDVENV-----EYISTDKGYVYVVVVVL----------KELSDEVEEELKK-LGFERLELEEEGTPSELIR 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2462623292 455 SHTKNIKELQDKLADVNKELSHLHTKCADreaLISTLKVELQNvlhcwEKEKAQA 509
Cdd:PRK05771 219 EIKEELEEIEKERESLLEELKELAKKYLE---ELLALYEYLEI-----ELERAEA 265
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
54-286 |
6.63e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 6.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 54 TKHNAELASYESQIAKLRSEVEKGEALRQSLE---YDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNET 130
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEerlEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 131 EKAFQTSQQKWKEECRRFEHDLEERDNmiqncnreydlLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdlLRR 210
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLE-----------ALRAAAELAAQLEELEEAEEALLERLERLEEE-------LEE 425
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462623292 211 QTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQvEKASQAEAVADLE 286
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAE 500
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
59-469 |
6.98e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 6.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 59 ELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHR---IQEKLCAQNSELQAKTNETEKAFQ 135
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddaDAEAVEARREELEDRDEELRDRLE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 136 ---TSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQT 212
Cdd:PRK02224 332 ecrVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 213 SELEFSTQREERLRKEFEATTLRVRKLEENIEaERAAHLESKFNSEIIQlrirDLEGALQVEKASQ-----AEAVADLEI 287
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVE-EAEALLEAGKCPECGQ----PVEGSPHVETIEEdrervEELEAELED 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 288 IKNEFKEVESAYEREKhNAQESFAKLNLLEKeyfsKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEEL-----VMA 362
Cdd:PRK02224 487 LEEEVEEVEERLERAE-DLVEAEDRIERLEE----RREDLEELIAERRETIEEKRERAEELRERAAELEAEAeekreAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 363 KKHQAflVETCENNVKELESILDSFTVSgqwtsgihkdkdkppsfsvvLERLRRtLTDYQNKLEDASNELNSMNDvKEKA 442
Cdd:PRK02224 562 EAEEE--AEEAREEVAELNSKLAELKER--------------------IESLER-IRTLLAAIADAEDEIERLRE-KREA 617
|
410 420
....*....|....*....|....*...
gi 2462623292 443 CNEL-DSTKQKIDSHTKNIKELQDKLAD 469
Cdd:PRK02224 618 LAELnDERRERLAEKRERKRELEAEFDE 645
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
934-1178 |
1.03e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 934 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQG----LQMQLNEFKQSKLITHEKFESACEELNNA 1009
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKelyaLANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1010 LLREEQAQMLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEEN 1089
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1090 IHDAESALRMAAKDKECVANHMRAVENTLHKAMIKsfmDVYQLASTRIMTLEKEMTSHRSHIAALKS------ELHTACL 1163
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELK---ELQAELEELEEELEELQEELERLEEALEElreeleEAEQALD 478
|
250
....*....|....*
gi 2462623292 1164 RENASLQSIGSRDHS 1178
Cdd:TIGR02168 479 AAERELAQLQARLDS 493
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-358 |
1.14e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 149 EHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFSTQREERLRKE 228
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE-------LAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 229 FEATTLRVRKLEENIE-AERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAvADLEIIKNEFKEVESAYEREKhnaq 307
Cdd:COG4942 99 LEAQKEELAELLRALYrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA-EELRADLAELAALRAELEAER---- 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462623292 308 esfAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEE 358
Cdd:COG4942 174 ---AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
66-586 |
2.48e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 66 QIAKLRSEVEKGEALRQSLEyDLAVARKE-AGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQqkwkEE 144
Cdd:COG4913 250 QIELLEPIRELAERYAAARE-RLAELEYLrAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR----EE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 145 CRRFEHDLEERD-NMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMH------------------KKVEKLETEHMDCS 205
Cdd:COG4913 325 LDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGlplpasaeefaalraeaaALLEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 206 DLLRRQTSELEFSTQREERLRKEFEAttLRVRKLeeNIEAeraahleskfnsEIIQLRiRDLEGALQVeKASQAEAVADL 285
Cdd:COG4913 405 EALAEAEAALRDLRRELRELEAEIAS--LERRKS--NIPA------------RLLALR-DALAEALGL-DEAELPFVGEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 286 EIIKNEFKEVESAYEREKHNaqesfAKLNLL-EKEYFSK-------NK--------KLNEDIEEQKKVIID---LSKRLQ 346
Cdd:COG4913 467 IEVRPEEERWRGAIERVLGG-----FALTLLvPPEHYAAalrwvnrLHlrgrlvyeRVRTGLPDPERPRLDpdsLAGKLD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 347 YNEKSCSE-LQEELvmakkHQAFLVETCEnNVKELESILDSFTVSGQ----WTSGIHKDKDKPPSFSVV----------- 410
Cdd:COG4913 542 FKPHPFRAwLEAEL-----GRRFDYVCVD-SPEELRRHPRAITRAGQvkgnGTRHEKDDRRRIRSRYVLgfdnraklaal 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 411 ---LERLRRTLTDYQNKLEDASNELNSMNDVKE--KACNELDSTKQKIDSHTKNIKELQDKLADV---NKELSHLHTKCA 482
Cdd:COG4913 616 eaeLAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAELERLdasSDDLAALEEQLE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 483 DREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKfswse 562
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN----- 770
|
570 580
....*....|....*....|....
gi 2462623292 563 lcavLQENVDALIADLNRANEKIR 586
Cdd:COG4913 771 ----LEERIDALRARLNRAEEELE 790
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
934-1177 |
4.94e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 934 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQmqlnefkqsklithekfesacEELNNALLRE 1013
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE---------------------YELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1014 EQAQMLLNEQAQQLQELNYRLELhssEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDA 1093
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEE---ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1094 ESALRMAAKDKecvANHMRAVENTLHKAmiksfmdvyQLASTRIMTLEKEMTSHRSHIAALKSELHTACLRENASLQSIG 1173
Cdd:COG1196 378 EEELEELAEEL---LEALRAAAELAAQL---------EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
....
gi 2462623292 1174 SRDH 1177
Cdd:COG1196 446 EAAE 449
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
47-688 |
5.27e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 5.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 47 KEKLEITTkhnAELASYESQIAKLRSEVEKGEALRQSLEYDL-AVARKEAGLGRRAAEERLAEAHRIQE--KLCAQNSEL 123
Cdd:TIGR02169 293 KEKIGELE---AEIASLERSIAEKERELEDAEERLAKLEAEIdKLLAEIEELEREIEEERKRRDKLTEEyaELKEELEDL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 124 QAKTNETEKAFQTSQQKWKEECRRfehdleerdnmIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMD 203
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREK-----------LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 204 CSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAeraahLESKFNSeiIQLRIRDLEGALQVEKASQAEAVA 283
Cdd:TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR-----VEKELSK--LQRELAEAEAQARASEERVRGGRA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 284 DLEIIKNEFKEVES------AYEREKHNAQESFA--KLN--LLEKEYFSKnkklnEDIEEQKKVIIDLSKRLQYNEKSCS 353
Cdd:TIGR02169 512 VEEVLKASIQGVHGtvaqlgSVGERYATAIEVAAgnRLNnvVVEDDAVAK-----EAIELLKRRKAGRATFLPLNKMRDE 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 354 ELQEELVMAKKHQAFLVETCE-------------------NNVKELESILDSFTV----------SGQWTSGihkdKDKP 404
Cdd:TIGR02169 587 RRDLSILSEDGVIGFAVDLVEfdpkyepafkyvfgdtlvvEDIEAARRLMGKYRMvtlegelfekSGAMTGG----SRAP 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 405 PSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADR 484
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 485 EALISTLKVELQNVlhcwekeKAQAAQSESELQKLSQAFHKDAEEkltflhtlyqhlvagcvlIKQPEGMLDKFSWSElc 564
Cdd:TIGR02169 743 EEDLSSLEQEIENV-------KSELKELEARIEELEEDLHKLEEA------------------LNDLEARLSHSRIPE-- 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 565 avLQENVDALIADLNRANEKIRHLEYICKNKSdtmRELQQTQEDTFTKVAEQIKAQEscwhrQKKELELQYSELflevQK 644
Cdd:TIGR02169 796 --IQAELSKLEEEVSRIEARLREIEQKLNRLT---LEKEYLEKEIQELQEQRIDLKE-----QIKSIEKEIENL----NG 861
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2462623292 645 RAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQREQ 688
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
70-691 |
7.10e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 7.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 70 LRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFE 149
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 150 HDLEERDNMIQNCNREY-------DLLMKEKSRLEKTLQEqdtAVQNMHKKVEKLETEHMDCSDLLRRQTSelefSTQRE 222
Cdd:pfam15921 342 DKIEELEKQLVLANSELtearterDQFSQESGNLDDQLQK---LLADLHKREKELSLEKEQNKRLWDRDTG----NSITI 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 223 ERLRKEFEATTLRVRKLEENIEAERAahleskfnseiiqlrirDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYERE 302
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLKAMKS-----------------ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEML 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 303 KHNAQESFAKLNLLekeyfsknkklnediEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCEnNVKELES 382
Cdd:pfam15921 478 RKVVEELTAKKMTL---------------ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNEGD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 383 ILDSFTVSGQWTSGIHKDKDKppsfsvVLERLRRTLTDYQNKLEDASNELNSMNDVK---EKACN----ELDSTKQKIDS 455
Cdd:pfam15921 542 HLRNVQTECEALKLQMAEKDK------VIEILRQQIENMTQLVGQHGRTAGAMQVEKaqlEKEINdrrlELQEFKILKDK 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 456 HTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLH 535
Cdd:pfam15921 616 KDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 536 TLYQHLVAGCVLIKQPEGMLDKFSWSELCAV-----LQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQedtf 610
Cdd:pfam15921 696 KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEK---- 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 611 TKVAEQIKAQESCWHRQKKELELqyselfLEVQKRAQKfqeiaeknmEKLNHIEKSHEQLVLENSHFKKLLSQTQREQMS 690
Cdd:pfam15921 772 NKLSQELSTVATEKNKMAGELEV------LRSQERRLK---------EKVANMEVALDKASLQFAECQDIIQRQEQESVR 836
|
.
gi 2462623292 691 L 691
Cdd:pfam15921 837 L 837
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
46-304 |
8.82e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 8.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 46 KKEKLEittkhnAELASYESQIAKLRSEVEKGEALRQsleydlAVARKEAGLGRR-AAEERLAEAHRIQEKLCAQNSELQ 124
Cdd:PRK02224 476 RVEELE------AELEDLEEEVEEVEERLERAEDLVE------AEDRIERLEERReDLEELIAERRETIEEKRERAEELR 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 125 AKTNETEkafqTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKtLQEQDTAVQNMHKKVEKLETEhmdc 204
Cdd:PRK02224 544 ERAAELE----AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREK---- 614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 205 sdllRRQTSELEfsTQREERLRKEFEattlRVRKLEENIEAERAAHLESKfnSEIIQLRIRDLEGALQVEKASQAEAVAD 284
Cdd:PRK02224 615 ----REALAELN--DERRERLAEKRE----RKRELEAEFDEARIEEARED--KERAEEYLEQVEEKLDELREERDDLQAE 682
|
250 260
....*....|....*....|
gi 2462623292 285 LEIIKNEFKEVESAYEREKH 304
Cdd:PRK02224 683 IGAVENELEELEELRERREA 702
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3-364 |
9.98e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 9.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 3 LNTSSNTGDTQRLKIASLDVK-QILKNETELDITDNLRKKLHWAKK-EKLEITTKHNAELASYESQIAKLRSEVEKGEAL 80
Cdd:PTZ00121 1060 AEAKAHVGQDEGLKPSYKDFDfDAKEDNRADEATEEAFGKAEEAKKtETGKAEEARKAEEAKKKAEDARKAEEARKAEDA 1139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 81 RQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKlcAQNSELQAKTNETEKAFQTSQqkwKEECRRFEHDLE-ERDNMI 159
Cdd:PTZ00121 1140 RKAEEARKAEDAKRVEIARKAEDARKAEEARKAED--AKKAEAARKAEEVRKAEELRK---AEDARKAEAARKaEEERKA 1214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 160 QNCNR-EYDLLMKEKSRLEKTLQEQDTAvqnmhKKVEKLETEhmdcSDLLRRQTSELEFSTQREERLRKEFEATTLRVRK 238
Cdd:PTZ00121 1215 EEARKaEDAKKAEAVKKAEEAKKDAEEA-----KKAEEERNN----EEIRKFEEARMAHFARRQAAIKAEEARKADELKK 1285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 239 LEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEK--------ASQAEAVADLEIIKNEFKEVESAYEREKHNAQESF 310
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKkaeeakkkADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2462623292 311 AKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 364
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
36-521 |
1.93e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 36 DNLRKKLHWAKKEKLE----ITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAglgrraaeERLAEAHR 111
Cdd:pfam05483 207 ENARLEMHFKLKEDHEkiqhLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKA--------NQLEEKTK 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 112 IQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSR-----------LEKTL 180
Cdd:pfam05483 279 LQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKakaahsfvvteFEATT 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 181 QEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELE----FSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFN 256
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEemtkFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 257 SEIIQL------RIRDLEGALQVEKASQaeavadlEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEyfskNKKLned 330
Cdd:pfam05483 439 QELIFLlqarekEIHDLEIQLTAIKTSE-------EHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLE----NKEL--- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 331 IEEQKKVIIDLSKRlQYNEKSCSELQEELVmakKHQAFLVETCENNVKELESILDSFTVSGQWTSgIHKDKDKPPSFSVV 410
Cdd:pfam05483 505 TQEASDMTLELKKH-QEDIINCKKQEERML---KQIENLEEKEMNLRDELESVREEFIQKGDEVK-CKLDKSEENARSIE 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 411 LERLRRtltdyqnkledasnelNSMNDVKEKACNELdstKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALIST 490
Cdd:pfam05483 580 YEVLKK----------------EKQMKILENKCNNL---KKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK 640
|
490 500 510
....*....|....*....|....*....|.
gi 2462623292 491 LKVELQNVLHCWEkEKAQAAQSESELQKLSQ 521
Cdd:pfam05483 641 LELELASAKQKFE-EIIDNYQKEIEDKKISE 670
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
58-263 |
2.44e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 58 AELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGR---RAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAF 134
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArriRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 135 QT------------------SQQKWKEECRR---FEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKK 193
Cdd:COG4942 107 AEllralyrlgrqpplalllSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 194 VEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLR 263
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
58-285 |
2.78e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 58 AELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEaglgRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTS 137
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEE----LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 138 QQkwkeECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdLLRRQTSELEF 217
Cdd:COG1196 392 LR----AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE------EAELEEEEEAL 461
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462623292 218 STQREERLRKEfeattlrvRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADL 285
Cdd:COG1196 462 LELLAELLEEA--------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
970-1121 |
3.16e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 970 EMKKELD--KAQGLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYRLELHSSEEADKNQT 1047
Cdd:COG1196 217 ELKEELKelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462623292 1048 LGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKA 1121
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
5-473 |
5.57e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.66 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 5 TSSNTGDTQRLKIASLDVKQILKNETELDITDnLRKKLhwakKEKLEITTKHNAELASYESQIAKLrsevekgealrqsl 84
Cdd:TIGR01612 1291 IISKKHDENISDIREKSLKIIEDFSEESDIND-IKKEL----QKNLLDAQKHNSDINLYLNEIANI-------------- 1351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 85 eYDLavarkeagLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWK-EECR-RFEHDLEERD--NMIQ 160
Cdd:TIGR01612 1352 -YNI--------LKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINlEECKsKIESTLDDKDidECIK 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 161 NCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQ----TSELEFSTQReerLRKEFEATTLRV 236
Cdd:TIGR01612 1423 KIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKkdnaTNDHDFNINE---LKEHIDKSKGCK 1499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 237 RKLEENIEA-ERAAHLESKFNSEIIQLRIRDLEGALqveKASQAEAVADLEIIKNEFKEVESAYEREkhnAQESFAKLNL 315
Cdd:TIGR01612 1500 DEADKNAKAiEKNKELFEQYKKDVTELLNKYSALAI---KNKFAKTKKDSEIIIKEIKDAHKKFILE---AEKSEQKIKE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 316 LEKEYF------SKNKKLNedieeqkKVIIDLSKRLQYNEKSCSELQEelvMAKKHQAFLVETcennvKELESILDSFTV 389
Cdd:TIGR01612 1574 IKKEKFrieddaAKNDKSN-------KAAIDIQLSLENFENKFLKISD---IKKKINDCLKET-----ESIEKKISSFSI 1638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 390 SGQWTSgIHKDKDKPPSFSVVLERLRrtltDYQNKLEDASNELNSMNdvkekacNELDSTKQKIDSHTKN----IKELQD 465
Cdd:TIGR01612 1639 DSQDTE-LKENGDNLNSLQEFLESLK----DQKKNIEDKKKELDELD-------SEIEKIEIDVDQHKKNyeigIIEKIK 1706
|
....*...
gi 2462623292 466 KLADVNKE 473
Cdd:TIGR01612 1707 EIAIANKE 1714
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
404-622 |
6.28e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 404 PPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCAD 483
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 484 REALISTLKVELQNVLhcwekEKAQAAQSESELQ-KLSQAFHKDAEEKLTFLHTLYQHLVAgcvLIKQPEGMLDKFswSE 562
Cdd:COG4942 95 LRAELEAQKEELAELL-----RALYRLGRQPPLAlLLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAEL--AA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 563 LCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQEDTFTKVAEQIKAQES 622
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
138-687 |
9.21e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 9.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 138 QQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETehmdcsdllrrQTSELEF 217
Cdd:TIGR04523 140 IDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL-----------LLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 218 STQREERLRKEFEATTLRVRKLEENIEAEraahlESKFNSeiIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVES 297
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKK-----QQEINE--KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 298 AYEREKHNAQESFAKLNLLEKEYFSK-NKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHqaflVETCENN 376
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE----LTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 377 VKELESILDsftvsgQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDAS-------NELNSMNDVKEKACNELDST 449
Cdd:TIGR04523 358 NSEKQRELE------EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEklnqqkdEQIKKLQQEKELLEKEIERL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 450 KQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAfHKDAEE 529
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE-KKELEE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 530 KLTFLhtlyqhlvagcvlikqpegmldkfswSELCAVLQENVDALIADLNRANEKIRHLE-YICKNKSDTMRELQQTQED 608
Cdd:TIGR04523 511 KVKDL--------------------------TKKISSLKEKIEKLESEKKEKESKISDLEdELNKDDFELKKENLEKEID 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 609 TFTKVAEQIKAQESCW---HRQKKELELQYSELFLEVQKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQ 685
Cdd:TIGR04523 565 EKNKEIEELKQTQKSLkkkQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
..
gi 2462623292 686 RE 687
Cdd:TIGR04523 645 QE 646
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
414-690 |
9.37e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 9.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 414 LRRTLTDYQNKLEDASNELNSMNDVK-------EKACNELDSTKQKIDShTKNIKElqDKLADVNKELSHLHTKCADREA 486
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRrresqsqEDLRNQLQNTVHELEA-AKCLKE--DMLEDSNTQIEQLRKMMLSHEG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 487 LIStlkvELQNVLHCWEKEKAQAAQSESELQKLS-QAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCA 565
Cdd:pfam15921 185 VLQ----EIRSILVDFEEASGKKIYEHDSMSTMHfRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIEL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 566 VLQENVDALIADLNRANEKIRHLeyicKNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKR 645
Cdd:pfam15921 261 LLQQHQDRIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREA 336
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462623292 646 AQKFQEiaeknmeklnHIEKSHEQLVLENSHFKKllSQTQREQMS 690
Cdd:pfam15921 337 KRMYED----------KIEELEKQLVLANSELTE--ARTERDQFS 369
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
931-1097 |
1.42e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 931 KSTASLQKQILGFTQRLhaaeverRSLRLEVTEFKRSVNEMKKE----LDKAQgLQMQLNEfkqskliTHEKFESACEEL 1006
Cdd:PRK11281 80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETREtlstLSLRQ-LESRLAQ-------TLDQLQNAQNDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1007 N--NALL-----REEQAQMLLNEQAQQLQELNYRLELHSSEEADKN---QTLGEAVKSLSEAKMELRRKD-------QSL 1069
Cdd:PRK11281 145 AeyNSQLvslqtQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQALLNAQNDLQRKSlegntqlQDL 224
|
170 180
....*....|....*....|....*...
gi 2462623292 1070 RQLNRHLTQLEQDkrRLEENIHDAESAL 1097
Cdd:PRK11281 225 LQKQRDYLTARIQ--RLEHQLQLLQEAI 250
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
36-502 |
1.44e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 36 DNLRKKLHWAKKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSL-EYDLAVARKEAGLGRRAAEERLAEAHRIQE 114
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELeELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 115 KLCAQNSELQAKTNETEKAFQTSQQKWKEEcRRFEHDLEERDNMIQNCNREYDLLMKEKS-RLEKTLQEQDTAVQNMHKK 193
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 194 VEKLETEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKF-NSEIIQLRIRDLEGALQ 272
Cdd:COG4717 208 LAELEEE-------LEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLgLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 273 VekASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLE--KEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEK 350
Cdd:COG4717 281 L--VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEEllAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 351 SCSELQEELVMAKKHQAFLvetcENNVKELESILDSFTVSGQWtsgihkdkdkppsfsvvlERLRRTLTDYQNKLEDASN 430
Cdd:COG4717 359 LEEELQLEELEQEIAALLA----EAGVEDEEELRAALEQAEEY------------------QELKEELEELEEQLEELLG 416
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462623292 431 ELNSMNDV--KEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHT--KCADREALISTLKVELQNVLHCW 502
Cdd:COG4717 417 ELEELLEAldEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAELLQELEELKAELRELAEEW 492
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
940-1105 |
1.53e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 940 ILGFT--QRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLnefkqsklithekfeSACEELNNALLREEQAQ 1017
Cdd:COG4913 603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1018 MLLNEQAQQLQELnyrlelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESAL 1097
Cdd:COG4913 668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
....*...
gi 2462623292 1098 RMAAKDKE 1105
Cdd:COG4913 737 EAAEDLAR 744
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
934-1090 |
1.66e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 934 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEkfesaceelnnallrE 1013
Cdd:COG1579 34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKE---------------I 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462623292 1014 EQAQMLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMELrrkDQSLRQLNRHLTQLEQDKRRLEENI 1090
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL---DEELAELEAELEELEAEREELAAKI 172
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
929-1102 |
2.56e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 929 ITKSTASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQG-LQMQLNEFKQSKLITHEKFESACEELN 1007
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEeLAELLRALYRLGRQPPLALLLSPEDFL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 1008 ---------NALLREEQAQML-LNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKME----LRRKDQSLRQLN 1073
Cdd:COG4942 133 davrrlqylKYLAPARREQAEeLRADLAELAALRAELEAERAELEALLAELEEERAALEALKAErqklLARLEKELAELA 212
|
170 180
....*....|....*....|....*....
gi 2462623292 1074 RHLTQLEQDKRRLEENIHDAESALRMAAK 1102
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
227-518 |
3.28e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 41.55 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 227 KEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLE------------GALQVEKASQAEAVADLEIIKNEFKE 294
Cdd:pfam05701 70 EELESTKRLIEELKLNLERAQTEEAQAKQDSELAKLRVEEMEqgiadeasvaakAQLEVAKARHAAAVAELKSVKEELES 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 295 VESAY-----ERE--KHNAQESFAKLNLLEKEYFSKNKKLNE-------------DIEEQK--------KVIIDLSKRLQ 346
Cdd:pfam05701 150 LRKEYaslvsERDiaIKRAEEAVSASKEIEKTVEELTIELIAtkeslesahaahlEAEEHRigaalareQDKLNWEKELK 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 347 YNEKSCSELQEELVMAKKHQAFLvETCENNVKELESILDSFTVS--GQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNK 424
Cdd:pfam05701 230 QAEEELQRLNQQLLSAKDLKSKL-ETASALLLDLKAELAAYMESklKEEADGEGNEKKTSTSIQAALASAKKELEEVKAN 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 425 LEDASNELNSMNDV---------KEKAcnELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVEL 495
Cdd:pfam05701 309 IEKAKDEVNCLRVAaaslrseleKEKA--ELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQL 386
|
330 340
....*....|....*....|...
gi 2462623292 496 QNVLHCWEKEKAQAAQSESELQK 518
Cdd:pfam05701 387 QQAAQEAEEAKSLAQAAREELRK 409
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
411-484 |
4.09e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.09e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462623292 411 LERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADR 484
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
67-726 |
4.20e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 67 IAKLRSEVEKGEALRQSLEYDLAvarKEAGLGRRAAEERLAEAHRIQEKlcaqnselQAKTNETEKAFQTSQQKWKEECR 146
Cdd:pfam12128 236 IMKIRPEFTKLQQEFNTLESAEL---RLSHLHFGYKSDETLIASRQEER--------QETSAELNQLLRTLDDQWKEKRD 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 147 RFEHDLEERDNMIQNCNREYDLLMK-----EKSRLEKTLQEQDTA------VQNMHKKVEKLETEHMDCSDLLRRQTSel 215
Cdd:pfam12128 305 ELNGELSAADAAVAKDRSELEALEDqhgafLDADIETAAADQEQLpswqseLENLEERLKALTGKHQDVTAKYNRRRS-- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 216 efstQREERLRKEFEATTLRVRKLEENIEAERAA------HLESKFNSEIIQLRIRDLEGALQVE-KASQAEAVADLEII 288
Cdd:pfam12128 383 ----KIKEQNNRDIAGIKDKLAKIREARDRQLAVaeddlqALESELREQLEAGKLEFNEEEYRLKsRLGELKLRLNQATA 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 289 KNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMA------ 362
Cdd:pfam12128 459 TPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQagtllh 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 363 ---------KKHQAFLVETCENNVKELESILDSFTVSGQWTSG---IHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASN 430
Cdd:pfam12128 539 flrkeapdwEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYgvkLDLKRIDVPEWAASEEELRERLDKAEEALQSARE 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 431 ELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLhcwekeKAQAA 510
Cdd:pfam12128 619 KQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSL------EAQLK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 511 QSESELQKLSQAFHKDAEEKLTFLHTLYQHLV----AGCVLIKQPEGMLDKFSWSELCAVLQENVDAL---------IAD 577
Cdd:pfam12128 693 QLDKKHQAWLEEQKEQKREARTEKQAYWQVVEgaldAQLALLKAAIAARRSGAKAELKALETWYKRDLaslgvdpdvIAK 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 578 LNRANEK-IRHLEYICKNKSDtMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKN 656
Cdd:pfam12128 773 LKREIRTlERKIERIAVRRQE-VLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKAS 851
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 657 MEKLNHIEKSHEQLVLENSHFKKLLSQTQREQMSLLAACALMAGAlyplysrscALSTQRDFLQEQVNTF 726
Cdd:pfam12128 852 EKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLE---------DLKLKRDYLSESVKKY 912
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
206-531 |
4.22e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 206 DLLRRQTSELEfstQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADL 285
Cdd:COG1196 242 EELEAELEELE---AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 286 EIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEyfsknkklnedIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKH 365
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEE-----------LEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 366 QAFLVETCENNVKElesildsftvsgqwtsgihkdkdkppsfsvvLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNE 445
Cdd:COG1196 388 LLEALRAAAELAAQ-------------------------------LEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 446 LDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQnvlhcwekEKAQAAQSESELQKLSQAFHK 525
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA--------EAAARLLLLLEAEADYEGFLE 508
|
....*.
gi 2462623292 526 DAEEKL 531
Cdd:COG1196 509 GVKAAL 514
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
180-364 |
4.38e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 180 LQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAhLESKfnSEI 259
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAE-------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE-IEER--REE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 260 IQLRIRDL------EGALQV--------EKASQAEAV-----ADLEIIkNEFKEVESAYEREKHNAQESFAKLNLLEKEY 320
Cdd:COG3883 88 LGERARALyrsggsVSYLDVllgsesfsDFLDRLSALskiadADADLL-EELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462623292 321 FSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 364
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
173-658 |
4.64e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 4.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 173 KSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENI--------- 243
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLrnqlqntvh 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 244 EAERAAHLESKF----NSEIIQLRIRDL--EGALQ--------VEKASQA-------------------------EAVAD 284
Cdd:pfam15921 153 ELEAAKCLKEDMledsNTQIEQLRKMMLshEGVLQeirsilvdFEEASGKkiyehdsmstmhfrslgsaiskilrELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 285 LEIIKNEFKEVESAYEREKHNAQEsfaKLNLLEKEYFSKNKKLnedIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 364
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSESQN---KIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 365 HQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLErlRRTLTDYQNKLEDASNELNSMNDVKEKACN 444
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA--NSELTEARTERDQFSQESGNLDDQLQKLLA 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 445 ELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADR-------EALISTLKVELQNVLhcwEKEKAQAAQSESELQ 517
Cdd:pfam15921 385 DLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRnmevqrlEALLKAMKSECQGQM---ERQMAAIQGKNESLE 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 518 KLSqAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLdkfswSELCAVLQENVDALIAD-------LNRANEKIRHLEY 590
Cdd:pfam15921 462 KVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTV-----SDLTASLQEKERAIEATnaeitklRSRVDLKLQELQH 535
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462623292 591 IcKNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELEL--QYSELFLEVQ-KRAQKFQEIAEKNME 658
Cdd:pfam15921 536 L-KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgQHGRTAGAMQvEKAQLEKEINDRRLE 605
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
269-522 |
4.78e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 269 GALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYfsknKKLNEDIEEQKKVIIDLSKRLQYN 348
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEY----NELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 349 EKSCSELQEELvmakKHQAFLVETCENNVKELESILDSftvsgqwtsgihkdkdkpPSFSVVLERL--RRTLTDYQNKLe 426
Cdd:COG3883 78 EAEIEERREEL----GERARALYRSGGSVSYLDVLLGS------------------ESFSDFLDRLsaLSKIADADADL- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 427 dasneLNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELshlhtkcADREALISTLKVELQNVLHCWEKEK 506
Cdd:COG3883 135 -----LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ-------AEQEALLAQLSAEEAAAEAQLAELE 202
|
250
....*....|....*.
gi 2462623292 507 AQAAQSESELQKLSQA 522
Cdd:COG3883 203 AELAAAEAAAAAAAAA 218
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
944-1094 |
5.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 944 TQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHE--KFESACEELNNALLREEQAQMLLN 1021
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAElaELPERLEELEERLEELRELEEELE 166
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462623292 1022 EQAQQLQELNYRL-ELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAE 1094
Cdd:COG4717 167 ELEAELAELQEELeELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
59-266 |
6.76e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 59 ELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAglgrRAAEERLAEAHRIQEKLcaqNSELQAKTNETEKafqtsq 138
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARL----EAAKTELEDLEKEIKRL---ELEIEEVEARIKK------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 139 qkwkeecrrfehdLEERDNMIQNcNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFS 218
Cdd:COG1579 78 -------------YEEQLGNVRN-NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEE-------LAELEAELAEL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462623292 219 TQREERLRKEFEATTLRVRKLEENIEAERAAhLESKFNSEIIQL--RIRD 266
Cdd:COG1579 137 EAELEEKKAELDEELAELEAELEELEAEREE-LAAKIPPELLALyeRIRK 185
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
170-344 |
7.40e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 7.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 170 MKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAa 249
Cdd:COG1579 2 MPEDLRALLDLQELDSELDRLEHRLKELPAE-------LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEA- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 250 hLESKFNSEIIQLR-IRDLEgALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQEsfaKLNLLEKEYFSKNKKLN 328
Cdd:COG1579 74 -RIKKYEEQLGNVRnNKEYE-ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEA---ELAELEAELEEKKAELD 148
|
170
....*....|....*.
gi 2462623292 329 EDIEEQKKVIIDLSKR 344
Cdd:COG1579 149 EELAELEAELEELEAE 164
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
164-313 |
8.62e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 8.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 164 REYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSEL-EFSTQRE-ERLRKEFEATTLRVRKLEE 241
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgNVRNNKEyEALQKEIESLKRRISDLED 110
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462623292 242 NIEAeraahleskfnseiIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKL 313
Cdd:COG1579 111 EILE--------------LMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
114-336 |
8.98e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.41 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 114 EKLcaqNSELQAKTNETEKAFQTS-QQKWKEECRRFEHDLEERDNMIQNCNREYD-----------------LLMKEKSR 175
Cdd:PTZ00108 1105 EKL---NAELEKKEKELEKLKNTTpKDMWLEDLDKFEEALEEQEEVEEKEIAKEQrlksktkgkasklrkpkLKKKEKKK 1181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 176 LEKTLQEQDTAVQNMHKK-VEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEaeraahLESK 254
Cdd:PTZ00108 1182 KKSSADKSKKASVVGNSKrVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSS------KSSE 1255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623292 255 FNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQ 334
Cdd:PTZ00108 1256 DNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKK 1335
|
..
gi 2462623292 335 KK 336
Cdd:PTZ00108 1336 KS 1337
|
|
|