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Conserved domains on  [gi|2462534016|ref|XP_054229021|]
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SWI/SNF complex subunit SMARCC2 isoform X8 [Homo sapiens]

Protein Classification

SWIRM-assoc_2 and SWIRM-assoc_1 domain-containing protein( domain architecture ID 13873234)

protein containing domains SWIRM-assoc_2, RSC8, SWIRM-assoc_3, and SWIRM-assoc_1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SWIRM-assoc_2 pfam16496
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ...
 4-420 0e+00

SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


:

Pssm-ID: 465143  Cd Length: 412  Bit Score: 760.73  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016    4 RKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLD 83
Cdd:pfam16496    1 RKKDGGPNVKFFESPETLAQLESVRQWLGKNYKKYVQADPPTNKSLATLVVQLLQFQEDAFGKNVSKPPLTRLPMKCFLD 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016   84 FKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRH 163
Cdd:pfam16496   81 FKPGGGLCHILATAYKFKSEQGWRRFDFQNPSRMDRNVEMFMNIEKALVQNNCLTRPVIYIRPDVDKKLASKLKDIIKRH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  164 QGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAKWIL 243
Cdd:pfam16496  161 QGTITEDEEDATHIVYPPPPDPEEEEWARPVMKRDKQVLVHWYYFPDSYDTWVPSSDVDLPVDDPPTPEKPWRVHAKWLL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  244 DTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKtltDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPstP 323
Cdd:pfam16496  241 DLDQYNEWMNEEDYEVDENGKKKSHRQRISVE---DEMSSPDPDRKDKKSSPGKKRKRSPSPPPTPVGKKKSGRKGS--P 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  324 YTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNK 403
Cdd:pfam16496  316 ARRKKRRREEEEEEDLTKDMEDPTPVPNIEEVNLPKNVNSKKDSENQPVKGGTMTDLDEQEDDKVESGGKEDEEGGKTSK 395

                          410
                   ....*....|....*..
gi 2462534016  404 GEQTKNPDLHEDNVTEQ 420
Cdd:pfam16496  396 GEGSRLSDEHEDNVTEQ 412
RSC8 super family cl34960
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 379-707 1.44e-80

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


The actual alignment was detected with superfamily member COG5259:

Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 273.30  E-value: 1.44e-80
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  379 DLDEQEDESMETTGkdeDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKT 458
Cdd:COG5259     10 DSGEERNEQSAEIM---DHSKSANEKKTTILRVEAETFLMEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKT 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  459 PEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTP 538
Cdd:COG5259     87 PEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLHDTP 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  539 SGLVPLQPKTP-------QTSASQQM---------LNFPDK-GKEKPTDMQ-----------------NFG----LRTDM 580
Cdd:COG5259    167 RGLSPFLPWGPinqrvlgAKEIEYEThkeenyspsLKSPKKeSQGKVDELKdhsekhpsscsccgnksFNTryhnLRAEK 246

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  581 YT------KKNV-PSKS------KAAASATRE---WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIE 644
Cdd:COG5259    247 YNscsecyDQGRfPSEFtssdfkPVTISLLIRdknWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIE 326

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  645 DPYLEDSEASlGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS----AAAKSALEEFSKMKEEVP 707
Cdd:COG5259    327 DNYLSKGDGK-GDNSKGRLPFDGSENPVLSTISFLAGIVNPRVQSekqrAIIKSGKISHINRESQEH 392
SWIRM-assoc_3 pfam16498
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ...
 683-749 3.66e-34

SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


:

Pssm-ID: 465145 [Multi-domain]  Cd Length: 67  Bit Score: 125.16  E-value: 3.66e-34
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  683 VDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER 749
Cdd:pfam16498    1 VDPRVAAAAAKAAMEEFSKIKEEVPPALVEAHVKNVEEAAKKGGKVDPAFGLEKSGIAGTDPEEPEK 67
SWIRM-assoc_1 pfam16495
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ...
 879-945 2.85e-31

SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


:

Pssm-ID: 465142 [Multi-domain]  Cd Length: 84  Bit Score: 117.62  E-value: 2.85e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  879 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRA 945
Cdd:pfam16495   18 EEREIQRLVALLVETQLKKLELKLKQFEELEKLLERERRQLERQRQQLFLERLAFKKQRLEVAEKLA 84
PTZ00121 super family cl31754
MAEBL; Provisional
 689-946 3.68e-07

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 54.76  E-value: 3.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  689 SAAAKSALEEFSKMKEEVPTA----LVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQA 764
Cdd:PTZ00121  1413 AAAAKKKADEAKKKAEEKKKAdeakKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  765 TDEKKEPKEPREgggaiEEEAKEKTSEApKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQ--EEVLKEVVESEG 842
Cdd:PTZ00121  1493 EEAKKKADEAKK-----AAEAKKKADEA-KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKKA 1566

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  843 ERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEiKLRHFEELETIMDREREALEYQ 922
Cdd:PTZ00121  1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEE 1645

                          250       260
                   ....*....|....*....|....
gi 2462534016  923 RQQLLADRQAFHMEQLKYAEMRAR 946
Cdd:PTZ00121  1646 KKKAEELKKAEEENKIKAAEEAKK 1669
 
Name Accession Description Interval E-value
SWIRM-assoc_2 pfam16496
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ...
 4-420 0e+00

SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465143  Cd Length: 412  Bit Score: 760.73  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016    4 RKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLD 83
Cdd:pfam16496    1 RKKDGGPNVKFFESPETLAQLESVRQWLGKNYKKYVQADPPTNKSLATLVVQLLQFQEDAFGKNVSKPPLTRLPMKCFLD 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016   84 FKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRH 163
Cdd:pfam16496   81 FKPGGGLCHILATAYKFKSEQGWRRFDFQNPSRMDRNVEMFMNIEKALVQNNCLTRPVIYIRPDVDKKLASKLKDIIKRH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  164 QGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAKWIL 243
Cdd:pfam16496  161 QGTITEDEEDATHIVYPPPPDPEEEEWARPVMKRDKQVLVHWYYFPDSYDTWVPSSDVDLPVDDPPTPEKPWRVHAKWLL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  244 DTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKtltDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPstP 323
Cdd:pfam16496  241 DLDQYNEWMNEEDYEVDENGKKKSHRQRISVE---DEMSSPDPDRKDKKSSPGKKRKRSPSPPPTPVGKKKSGRKGS--P 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  324 YTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNK 403
Cdd:pfam16496  316 ARRKKRRREEEEEEDLTKDMEDPTPVPNIEEVNLPKNVNSKKDSENQPVKGGTMTDLDEQEDDKVESGGKEDEEGGKTSK 395

                          410
                   ....*....|....*..
gi 2462534016  404 GEQTKNPDLHEDNVTEQ 420
Cdd:pfam16496  396 GEGSRLSDEHEDNVTEQ 412
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 379-707 1.44e-80

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 273.30  E-value: 1.44e-80
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  379 DLDEQEDESMETTGkdeDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKT 458
Cdd:COG5259     10 DSGEERNEQSAEIM---DHSKSANEKKTTILRVEAETFLMEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKT 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  459 PEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTP 538
Cdd:COG5259     87 PEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLHDTP 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  539 SGLVPLQPKTP-------QTSASQQM---------LNFPDK-GKEKPTDMQ-----------------NFG----LRTDM 580
Cdd:COG5259    167 RGLSPFLPWGPinqrvlgAKEIEYEThkeenyspsLKSPKKeSQGKVDELKdhsekhpsscsccgnksFNTryhnLRAEK 246

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  581 YT------KKNV-PSKS------KAAASATRE---WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIE 644
Cdd:COG5259    247 YNscsecyDQGRfPSEFtssdfkPVTISLLIRdknWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIE 326

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  645 DPYLEDSEASlGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS----AAAKSALEEFSKMKEEVP 707
Cdd:COG5259    327 DNYLSKGDGK-GDNSKGRLPFDGSENPVLSTISFLAGIVNPRVQSekqrAIIKSGKISHINRESQEH 392
SWIRM pfam04433
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid ...
 433-512 7.04e-37

SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA.


Pssm-ID: 461307 [Multi-domain]  Cd Length: 78  Bit Score: 133.07  E-value: 7.04e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  433 FDYNSVHAIERRALPEFFNGKnkSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
Cdd:pfam04433    1 SDPDKLHPIEKRLLPEFFNGK--SKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALKGDVNLISRIHEFLERWGLINF 78
SWIRM-assoc_3 pfam16498
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ...
 683-749 3.66e-34

SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465145 [Multi-domain]  Cd Length: 67  Bit Score: 125.16  E-value: 3.66e-34
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  683 VDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER 749
Cdd:pfam16498    1 VDPRVAAAAAKAAMEEFSKIKEEVPPALVEAHVKNVEEAAKKGGKVDPAFGLEKSGIAGTDPEEPEK 67
SWIRM-assoc_1 pfam16495
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ...
 879-945 2.85e-31

SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465142 [Multi-domain]  Cd Length: 84  Bit Score: 117.62  E-value: 2.85e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  879 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRA 945
Cdd:pfam16495   18 EEREIQRLVALLVETQLKKLELKLKQFEELEKLLERERRQLERQRQQLFLERLAFKKQRLEVAEKLA 84
PTZ00121 PTZ00121
MAEBL; Provisional
 689-946 3.68e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 54.76  E-value: 3.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  689 SAAAKSALEEFSKMKEEVPTA----LVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQA 764
Cdd:PTZ00121  1413 AAAAKKKADEAKKKAEEKKKAdeakKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  765 TDEKKEPKEPREgggaiEEEAKEKTSEApKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQ--EEVLKEVVESEG 842
Cdd:PTZ00121  1493 EEAKKKADEAKK-----AAEAKKKADEA-KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKKA 1566

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  843 ERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEiKLRHFEELETIMDREREALEYQ 922
Cdd:PTZ00121  1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEE 1645

                          250       260
                   ....*....|....*....|....
gi 2462534016  923 RQQLLADRQAFHMEQLKYAEMRAR 946
Cdd:PTZ00121  1646 KKKAEELKKAEEENKIKAAEEAKK 1669
Caldesmon pfam02029
Caldesmon;
716-946 9.74e-07

Caldesmon;


Pssm-ID: 460421 [Multi-domain]  Cd Length: 495  Bit Score: 52.56  E-value: 9.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  716 RKVEEAAKVTGKADPAFGLESSGIAgttsDEPERIEESGNDEARVEGQATDEKKEPKEpREGGGAIEEEAKEKTSEAPKK 795
Cdd:pfam02029   77 KRLQEALERQKEFDPTIADEKESVA----ERKENNEEEENSSWEKEEKRDSRLGRYKE-EETEIREKEYQENKWSTEVRQ 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  796 DEEKG-KEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKH 874
Cdd:pfam02029  152 AEEEGeEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLS 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  875 LAAVEERKIKSLVallvETQMKKLEIKLRH---------------------FEELETIMDREREALEYQRQQllaDRQAF 933
Cdd:pfam02029  232 QSQEREEEAEVFL----EAEQKLEELRRRRqekeseefeklrqkqqeaeleLEELKKKREERRKLLEEEEQR---RKQEE 304

                          250
                   ....*....|...
gi 2462534016  934 HMEQLKYAEMRAR 946
Cdd:pfam02029  305 AERKLREEEEKRR 317
CHROMO smart00298
Chromatin organization modifier domain;
187-222 5.11e-05

Chromatin organization modifier domain;


Pssm-ID: 214605 [Multi-domain]  Cd Length: 55  Bit Score: 41.82  E-value: 5.11e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 2462534016   187 EEEWVRPVMKR-----DKQVLLHWGYYPDSYDTWIPASEIE 222
Cdd:smart00298    1 EYEVEKILDHRwkkkgELEYLVKWKGYSYSEDTWEPEENLL 41
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 695-851 5.47e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 44.22  E-value: 5.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  695 ALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGK--------ADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATD 766
Cdd:TIGR00927  626 ALGDLSKGDVAEAEHTGERTGEEGERPTEAEGEngeesggeAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAD 705

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  767 EKKEPKEPR---EGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKEseksdGDPIVDPEKEKEPKEGQEEVLKEVVESEGE 843
Cdd:TIGR00927  706 HKGETEAEEvehEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE-----GKHEVETEGDRKETEHEGETEAEGKEDEDE 780


                   ....*...
gi 2462534016  844 RKTKVERD 851
Cdd:TIGR00927  781 GEIQAGED 788
 
Name Accession Description Interval E-value
SWIRM-assoc_2 pfam16496
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ...
 4-420 0e+00

SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465143  Cd Length: 412  Bit Score: 760.73  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016    4 RKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLD 83
Cdd:pfam16496    1 RKKDGGPNVKFFESPETLAQLESVRQWLGKNYKKYVQADPPTNKSLATLVVQLLQFQEDAFGKNVSKPPLTRLPMKCFLD 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016   84 FKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRH 163
Cdd:pfam16496   81 FKPGGGLCHILATAYKFKSEQGWRRFDFQNPSRMDRNVEMFMNIEKALVQNNCLTRPVIYIRPDVDKKLASKLKDIIKRH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  164 QGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAKWIL 243
Cdd:pfam16496  161 QGTITEDEEDATHIVYPPPPDPEEEEWARPVMKRDKQVLVHWYYFPDSYDTWVPSSDVDLPVDDPPTPEKPWRVHAKWLL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  244 DTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKtltDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPstP 323
Cdd:pfam16496  241 DLDQYNEWMNEEDYEVDENGKKKSHRQRISVE---DEMSSPDPDRKDKKSSPGKKRKRSPSPPPTPVGKKKSGRKGS--P 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  324 YTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNK 403
Cdd:pfam16496  316 ARRKKRRREEEEEEDLTKDMEDPTPVPNIEEVNLPKNVNSKKDSENQPVKGGTMTDLDEQEDDKVESGGKEDEEGGKTSK 395

                          410
                   ....*....|....*..
gi 2462534016  404 GEQTKNPDLHEDNVTEQ 420
Cdd:pfam16496  396 GEGSRLSDEHEDNVTEQ 412
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 379-707 1.44e-80

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 273.30  E-value: 1.44e-80
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  379 DLDEQEDESMETTGkdeDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKT 458
Cdd:COG5259     10 DSGEERNEQSAEIM---DHSKSANEKKTTILRVEAETFLMEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKT 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  459 PEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTP 538
Cdd:COG5259     87 PEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLHDTP 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  539 SGLVPLQPKTP-------QTSASQQM---------LNFPDK-GKEKPTDMQ-----------------NFG----LRTDM 580
Cdd:COG5259    167 RGLSPFLPWGPinqrvlgAKEIEYEThkeenyspsLKSPKKeSQGKVDELKdhsekhpsscsccgnksFNTryhnLRAEK 246

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  581 YT------KKNV-PSKS------KAAASATRE---WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIE 644
Cdd:COG5259    247 YNscsecyDQGRfPSEFtssdfkPVTISLLIRdknWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIE 326

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  645 DPYLEDSEASlGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS----AAAKSALEEFSKMKEEVP 707
Cdd:COG5259    327 DNYLSKGDGK-GDNSKGRLPFDGSENPVLSTISFLAGIVNPRVQSekqrAIIKSGKISHINRESQEH 392
SWIRM pfam04433
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid ...
 433-512 7.04e-37

SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA.


Pssm-ID: 461307 [Multi-domain]  Cd Length: 78  Bit Score: 133.07  E-value: 7.04e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  433 FDYNSVHAIERRALPEFFNGKnkSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
Cdd:pfam04433    1 SDPDKLHPIEKRLLPEFFNGK--SKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALKGDVNLISRIHEFLERWGLINF 78
SWIRM-assoc_3 pfam16498
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ...
 683-749 3.66e-34

SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465145 [Multi-domain]  Cd Length: 67  Bit Score: 125.16  E-value: 3.66e-34
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  683 VDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER 749
Cdd:pfam16498    1 VDPRVAAAAAKAAMEEFSKIKEEVPPALVEAHVKNVEEAAKKGGKVDPAFGLEKSGIAGTDPEEPEK 67
SWIRM-assoc_1 pfam16495
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ...
 879-945 2.85e-31

SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465142 [Multi-domain]  Cd Length: 84  Bit Score: 117.62  E-value: 2.85e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534016  879 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRA 945
Cdd:pfam16495   18 EEREIQRLVALLVETQLKKLELKLKQFEELEKLLERERRQLERQRQQLFLERLAFKKQRLEVAEKLA 84
PTZ00121 PTZ00121
MAEBL; Provisional
 689-946 3.68e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 54.76  E-value: 3.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  689 SAAAKSALEEFSKMKEEVPTA----LVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQA 764
Cdd:PTZ00121  1413 AAAAKKKADEAKKKAEEKKKAdeakKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  765 TDEKKEPKEPREgggaiEEEAKEKTSEApKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQ--EEVLKEVVESEG 842
Cdd:PTZ00121  1493 EEAKKKADEAKK-----AAEAKKKADEA-KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKKA 1566

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  843 ERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEiKLRHFEELETIMDREREALEYQ 922
Cdd:PTZ00121  1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEE 1645

                          250       260
                   ....*....|....*....|....
gi 2462534016  923 RQQLLADRQAFHMEQLKYAEMRAR 946
Cdd:PTZ00121  1646 KKKAEELKKAEEENKIKAAEEAKK 1669
Caldesmon pfam02029
Caldesmon;
716-946 9.74e-07

Caldesmon;


Pssm-ID: 460421 [Multi-domain]  Cd Length: 495  Bit Score: 52.56  E-value: 9.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  716 RKVEEAAKVTGKADPAFGLESSGIAgttsDEPERIEESGNDEARVEGQATDEKKEPKEpREGGGAIEEEAKEKTSEAPKK 795
Cdd:pfam02029   77 KRLQEALERQKEFDPTIADEKESVA----ERKENNEEEENSSWEKEEKRDSRLGRYKE-EETEIREKEYQENKWSTEVRQ 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  796 DEEKG-KEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKH 874
Cdd:pfam02029  152 AEEEGeEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLS 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  875 LAAVEERKIKSLVallvETQMKKLEIKLRH---------------------FEELETIMDREREALEYQRQQllaDRQAF 933
Cdd:pfam02029  232 QSQEREEEAEVFL----EAEQKLEELRRRRqekeseefeklrqkqqeaeleLEELKKKREERRKLLEEEEQR---RKQEE 304

                          250
                   ....*....|...
gi 2462534016  934 HMEQLKYAEMRAR 946
Cdd:pfam02029  305 AERKLREEEEKRR 317
PTZ00121 PTZ00121
MAEBL; Provisional
 687-946 4.13e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.83  E-value: 4.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  687 VASAAAKSALEEFSKMKEEVPTALveahvRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEEsgndeARVEGQATD 766
Cdd:PTZ00121  1557 LKKAEEKKKAEEAKKAEEDKNMAL-----RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE-----AKIKAEELK 1626

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  767 EKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEvvesEGERKT 846
Cdd:PTZ00121  1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK----EAEEAK 1702

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  847 KVERdigegnlstAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQL 926
Cdd:PTZ00121  1703 KAEE---------LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773

                          250       260
                   ....*....|....*....|
gi 2462534016  927 LADRQAFHMEQLKYAEMRAR 946
Cdd:PTZ00121  1774 RKEKEAVIEEELDEEDEKRR 1793
CHROMO smart00298
Chromatin organization modifier domain;
187-222 5.11e-05

Chromatin organization modifier domain;


Pssm-ID: 214605 [Multi-domain]  Cd Length: 55  Bit Score: 41.82  E-value: 5.11e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 2462534016   187 EEEWVRPVMKR-----DKQVLLHWGYYPDSYDTWIPASEIE 222
Cdd:smart00298    1 EYEVEKILDHRwkkkgELEYLVKWKGYSYSEDTWEPEENLL 41
PTZ00121 PTZ00121
MAEBL; Provisional
 697-849 2.10e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 2.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  697 EEFSKMKEEVPTAlveAHVRKVEEAAKVTGKADPAFGLESSGIAGT---TSDEPERIEESGN-DEARV--EGQATDE-KK 769
Cdd:PTZ00121  1233 EEAKKDAEEAKKA---EEERNNEEIRKFEEARMAHFARRQAAIKAEearKADELKKAEEKKKaDEAKKaeEKKKADEaKK 1309

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  770 EPKEPREGGGAIE--EEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLK---EVVESEGER 844
Cdd:PTZ00121  1310 KAEEAKKADEAKKkaEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKkkaDAAKKKAEE 1389


                   ....*
gi 2462534016  845 KTKVE 849
Cdd:PTZ00121  1390 KKKAD 1394
PTZ00121 PTZ00121
MAEBL; Provisional
 693-852 2.47e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 2.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  693 KSALEEFSKMKEEVPTALVEAHVRKVEEAAKV---TGKADPAFGLESSgiAGTTSDEPERIEESGNDEARVEGQATDEKK 769
Cdd:PTZ00121  1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAeedKKKAEEAKKAEED--EKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  770 EPKEPREGggaiEEEAKEKTSEAPKKDEEKGKEGDS----EKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGE-R 844
Cdd:PTZ00121  1717 KAEELKKA----EEENKIKAEEAKKEAEEDKKKAEEakkdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEkR 1792


                   ....*...
gi 2462534016  845 KTKVERDI 852
Cdd:PTZ00121  1793 RMEVDKKI 1800
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 695-851 5.47e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 44.22  E-value: 5.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  695 ALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGK--------ADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATD 766
Cdd:TIGR00927  626 ALGDLSKGDVAEAEHTGERTGEEGERPTEAEGEngeesggeAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAD 705

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  767 EKKEPKEPR---EGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKEseksdGDPIVDPEKEKEPKEGQEEVLKEVVESEGE 843
Cdd:TIGR00927  706 HKGETEAEEvehEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE-----GKHEVETEGDRKETEHEGETEAEGKEDEDE 780


                   ....*...
gi 2462534016  844 RKTKVERD 851
Cdd:TIGR00927  781 GEIQAGED 788
PTZ00121 PTZ00121
MAEBL; Provisional
 690-942 7.71e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 7.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  690 AAAKSALEEFSKMKEEVPTAlvEAHVRKVEEAAKvtgKADPAfglessgiaGTTSDEPERIEESGNDEARvegQATDEKK 769
Cdd:PTZ00121  1298 AEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKK---KADAA---------KKKAEEAKKAAEAAKAEAE---AAADEAE 1360

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  770 EPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESE--KSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTK 847
Cdd:PTZ00121  1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEedKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA 1440

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  848 VERDIGEgnlstaAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQ--Q 925
Cdd:PTZ00121  1441 EEAKKAD------EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKadE 1514

                          250
                   ....*....|....*..
gi 2462534016  926 LLADRQAFHMEQLKYAE 942
Cdd:PTZ00121  1515 AKKAEEAKKADEAKKAE 1531
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 614-641 8.43e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 38.25  E-value: 8.43e-04
                           10        20
                   ....*....|....*....|....*...
gi 2462534016  614 MYKDDWNKVSEHVGSRTQDECILHFLRL 641
Cdd:pfam00249   18 KLGNRWKKIAKLLPGRTDNQCKNRWQNY 45
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 670-849 9.99e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.04  E-value: 9.99e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  670 NPVMSTVAFLASVV------DPRVASAAAKSALEEFSKMKEEVPTALVEAhvrKVEEAAKVTGKADPafGLESSGIAGTT 743
Cdd:PRK13108   257 NSFTSTFVFIGAVVyiilapKGREAPGALRGSEYVVDEALEREPAELAAA---AVASAASAVGPVGP--GEPNQPDDVAE 331

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  744 SDEPERIEESGNDEARVEGQ----------ATDEKKEPKEPREGGGAIEEEAkektSEAPKKDEEKGKEGDSE---KESE 810
Cdd:PRK13108   332 AVKAEVAEVTDEVAAESVVQvadrdgestpAVEETSEADIEREQPGDLAGQA----PAAHQVDAEAASAAPEEpaaLASE 407

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 2462534016  811 KSDGDPIVDPEKEkEPKEGQEEVLKEVVESEGERKTKVE 849
Cdd:PRK13108   408 AHDETEPEVPEKA-APIPDPAKPDELAVAGPGDDPAEPD 445
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 713-931 1.47e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.68  E-value: 1.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  713 AHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKE---PREGGGAIEEEAKEKT 789
Cdd:TIGR00927  622 AKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEgeiPAERKGEQEGEGEIEA 701

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  790 SEAPKKDEEKGKEGDSEKESEkSDGDpivDPEKEKEPKEGQEEVLKEV---VESEGERKTKVERDIGEGNLSTAAAAALA 866
Cdd:TIGR00927  702 KEADHKGETEAEEVEHEGETE-AEGT---EDEGEIETGEEGEEVEDEGegeAEGKHEVETEGDRKETEHEGETEAEGKED 777

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534016  867 AAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQ 931
Cdd:TIGR00927  778 EDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQ 842
PHA03169 PHA03169
hypothetical protein; Provisional
 737-855 8.37e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.95  E-value: 8.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534016  737 SGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREG-GGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGD 815
Cdd:PHA03169   102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPShPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPP 181

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2462534016  816 PIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEG 855
Cdd:PHA03169   182 TSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQ 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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