|
Name |
Accession |
Description |
Interval |
E-value |
| CEP209_CC5 |
pfam16574 |
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry ... |
1320-1447 |
1.05e-43 |
|
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry a number of coiled-coil regions, and this is the fifth along the length of the protein. It is thought that the proteins are involved in cilia biosynthesis.
Pssm-ID: 465184 [Multi-domain] Cd Length: 128 Bit Score: 155.62 E-value: 1.05e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1320 TMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEELRLQELKLNRELVKD 1399
Cdd:pfam16574 1 TMIQLQEDKAKLQEELKHAEEERRRAEDRAQELELKLKGLEELISTLKDGKGAQKVTEWHKKMEEIRLQELKLQRELSKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462534476 1400 KEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLER 1447
Cdd:pfam16574 81 KEEIKYLENLIREQERTISSLEEEIVQQTKLHEERQLAWDQREVELER 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1113-1920 |
1.13e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1113 HLRTSLKQMEERNFELETKFAELTKinldaqkvEQMLRDELADSVSKAVSDADRqriLELEKNEMELKVEV------SKL 1186
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKE--------AEEELEELTAELQELEEKLEE---LRLEVSELEEEIEElqkelyALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1187 REISDIaRRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDEKSLIAKlhqhnvSLQLSEATALGKLESITSKLQKMEAYN 1266
Cdd:TIGR02168 295 NEISRL-EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA------ELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1267 LRLEQKLDEKEQALYYARlegrNRAKHLRQTIQSLRRQFsgalplaQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNME 1346
Cdd:TIGR02168 368 EELESRLEELEEQLETLR----SKVAQLELQIASLNNEI-------ERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1347 NKTLEMELKLKGLEELISTLKDTkgAQKVINWHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQ 1426
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERL--EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1427 QNKFHEERQMAWDQREVDLERQLDIF----DRQQNEILNAAQKFEEATGSIPDPSLPLPNQLE---IALRKIKENIRIIL 1499
Cdd:TIGR02168 515 QSGLSGILGVLSELISVDEGYEAAIEaalgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPldsIKGTEIQGNDREIL 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1500 ETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELR--LRLPATAEREKLIAELGRKEMEPKSHHTLKIAhQTIANMQ 1577
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnaLELAKKLRPGYRIVTLDGDLVRPGGVITGGSA-KTNSSIL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1578 ARLNQKEEVLKKYQRLLEKAREEQREIVkkheedlhilhhRLELQADSSLNKFKQTAWDLMKQSPTPVPTNKHFIRLAEM 1657
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALA------------ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1658 EQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEfeniklqlqenHEDEVKKVKAEVEDLKYLLDQSQKESQCLKS 1737
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE-----------AEAEIEELEAQIEQLKEELKALREALDELRA 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1738 ELQAQKEANSRAptttmRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDrhtre 1817
Cdd:TIGR02168 811 ELTLLNEEAANL-----RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN----- 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1818 lktQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQG--K 1895
Cdd:TIGR02168 881 ---ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeaE 957
|
810 820
....*....|....*....|....*
gi 2462534476 1896 PLTDNKQSLIEELQRKVKKLENQLE 1920
Cdd:TIGR02168 958 ALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1493-2379 |
1.57e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1493 ENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPaTAEREKLIAELGRKEMEPKSHHTLKIAHQT 1572
Cdd:TIGR02168 155 EERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLK-SLERQAEKAERYKELKAELRELELALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1573 IANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEdlhilhHRLELQADSSLNKFKQTAWDLMKQsptpvptnkhfi 1652
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEE------LRLEVSELEEEIEELQKELYALAN------------ 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1653 RLAEMEQTVAEQDDSLSSLLVKLKKVS---QDLERQREITELKVKEFENIKLQLQENHE---DEVKKVKAEVEDLKYLLD 1726
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEaqlEELESKLDELAEELAELEEKLEELKEELEsleAELEELEAELEELESRLE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1727 QSQKESQCLKSEL-QAQKEANSraptttMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHL 1805
Cdd:TIGR02168 376 ELEEQLETLRSKVaQLELQIAS------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1806 -NVQQIVDRHTRELKTQVEDLNENLLKLKEAlKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQ 1884
Cdd:TIGR02168 450 eELQEELERLEEALEELREELEEAEQALDAA-ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1885 IK-----------RLTSGLQgKPLTDNKQSLIEElqrkVKKLENQLEGKVE--EVDLKPMKEKNAKEELIRweegkkwqA 1951
Cdd:TIGR02168 529 ISvdegyeaaieaALGGRLQ-AVVVENLNAAKKA----IAFLKQNELGRVTflPLDSIKGTEIQGNDREIL--------K 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1952 KIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADkekltlqrklkttgmTVDQVLGIRalesekELEELKKRNLDLENDI 2031
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVD---------------DLDNALELA------KKLRPGYRIVTLDGDL 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2032 LY----------MRAHQALPRDSVVEDLHLQNRYLQEKLHALEKQFskdtyskpsqnqisgiesDDHCQREQELQKENLK 2101
Cdd:TIGR02168 655 VRpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKAL------------------AELRKELEELEEELEQ 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2102 LSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKEKAEVQRKLGHVRgsGRSGKTIPELEKTIGLMKKVVEKVQRE 2181
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE--ERLEEAEEELAEAEAEIEELEAQIEQL 794
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2182 NEQLKKasgiltsekmanIEQENEKLKAELEKLKAHLgHQLSMHYESKTKGTEKIIAENERLRKELKKETDAAEKLRIAK 2261
Cdd:TIGR02168 795 KEELKA------------LREALDELRAELTLLNEEA-ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2262 NNLEILNEKMTVQLEETGKRLQFAESRGPQLEGADSKSWKSIvvtRMYETKLKELETDIAKKNQSITDLKQ-----LVKE 2336
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSELRRELEELREKLAQLELrleglEVRI 938
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 2462534476 2337 ATEREQKVNKYNEDLEQqikILKHVPEGAETEQGLKRELQVLR 2379
Cdd:TIGR02168 939 DNLQERLSEEYSLTLEE---AEALENKIEDDEEEARRRLKRLE 978
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-787 |
1.16e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 93 KLENELEMAQQSAGGRDTRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKK 172
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 173 NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEK 252
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 253 MTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTD-LLKSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQML 331
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 332 HNLREKLKNA--QLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKntcIIEDLKNELQRNKGASTLSQQthMKI 409
Cdd:TIGR02168 457 ERLEEALEELreELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG---VKALLKNQSGLSGILGVLSEL--ISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 410 QSTLDILKEKTKEAERTAELAEADarEKDKELVEALKRLKDYESGVYGLEDA-----VVEIKNCKNQIKIRDREIEILTK 484
Cdd:TIGR02168 532 DEGYEAAIEAALGGRLQAVVVENL--NAAKKAIAFLKQNELGRVTFLPLDSIkgteiQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 485 EINKLELKISDFL-------DENEALRERVGLEPKTMI---DLTEFRNSKHLKQQQYRAENQILL--KEIESLEEERLDL 552
Cdd:TIGR02168 610 FDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIvtlDGDLVRPGGVITGGSAKTNSSILErrREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 553 KKKIRQMAQERgkrsatSGLTTEDLNLTENISQGDRISERKLDLLSLKNMSEAQSKNEIIAQEFLIKEAECRNADIElEH 632
Cdd:TIGR02168 690 EEKIAELEKAL------AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE-AE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 633 HRSQAEQNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLER 712
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 713 LVNAIESKNAEGIFDASLH---------LKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQ 783
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIeeleelieeLESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
|
....
gi 2462534476 784 SEGS 787
Cdd:TIGR02168 923 KLAQ 926
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
524-1306 |
4.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 4.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 524 KHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERgkRSATSGLTTEDLNLTENISQGDRISERKLDLLslKNMS 603
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEEL--EELTAELQELEEKLEELRLEVSELEEEIEELQ--KELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 604 EAQSKNEIIAQEFLIKEAECRNADIELEHHRSQAEQNEflsRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMK 683
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELE---SKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 684 EILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESknaegifdaslhLKAQVDQLTGRNEELRQELRESRKEAINysQQ 763
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIER------------LEARLERLEDRRERLQQEIEELLKKLEE--AE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 764 LAKANLKIDHLEKETSLLRQSEgsnvvfkgidlpdgiapssasiiNSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKF 843
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEEL-----------------------ERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 844 AVIRHQQSLLYKEYLSEKETWKtesktiKEEKRKLEDQVQQDAIKV-KEYNNLLNALqmdsdemkkiLAENSRKITVLQV 922
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLK------NQSGLSGILGVLSELISVdEGYEAAIEAA----------LGGRLQAVVVENL 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 923 NEKSLIRQYTTLVELER------QLRKENEKQKNELLSMEAEVCEKIGCLQRFKEMAIFKIAaLQKVVDNSVSLSELELA 996
Cdd:TIGR02168 556 NAAKKAIAFLKQNELGRvtflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA-LSYLLGGVLVVDDLDNA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 997 NKQYNELTAKYRDI-----------------LQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQAW 1059
Cdd:TIGR02168 635 LELAKKLRPGYRIVtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1060 EQETKLGNEssmdkakksitnsdivsISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKiN 1139
Cdd:TIGR02168 715 EQLRKELEE-----------------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-E 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1140 LDAQKVEQMLRDELADSVSKAVSdADRQRILELEKNEMELKVEVSKLRE-----ISDIARRQVEILNAQQQSRDK--EVE 1212
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQLKEELK-ALREALDELRAELTLLNEEAANLRErleslERRIAATERRLEDLEEQIEELseDIE 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1213 SLRMQLLDYQAQSDEKSLIAKLHQHNV-SLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQAL--YYARLEGrn 1289
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLNERaSLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaqLELRLEG-- 933
|
810
....*....|....*..
gi 2462534476 1290 rakhLRQTIQSLRRQFS 1306
Cdd:TIGR02168 934 ----LEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1250-1975 |
1.03e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 1.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1250 GKLESITSKLQKMEAYnLRLEQKLDEKEQALYYARLEGRNraKHLRQTIQSLRRQfsgalplaqQEKFSKTMIQLQNDKL 1329
Cdd:TIGR02168 200 RQLKSLERQAEKAERY-KELKAELRELELALLVLRLEELR--EELEELQEELKEA---------EEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1330 KIMQEMKnsqqEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKV--INWHMKIEELRLQELKLNRELVKDKEEIKYLN 1407
Cdd:TIGR02168 268 KLEELRL----EVSELEEEIEELQKELYALANEISRLEQQKQILRErlANLERQLEELEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1408 NIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFD-------RQQNEILNAAQKFEEATGSIPD----- 1475
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAqlelqiaSLNNEIERLEARLERLEDRRERlqqei 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1476 ---PSLPLPNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPAtaerekLIAE 1552
Cdd:TIGR02168 424 eelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS------LERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1553 LGRKEMEPKSHHTLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQRE-IVKKHEEDLhilhhRLELQADSSLNKFK 1631
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQaVVVENLNAA-----KKAIAFLKQNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1632 QTAWDLMKQSPTPVPTNKHFIR---------LAEMEQTVAEQDDSLSSLLVKL--------------------------- 1675
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILkniegflgvAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgyrivtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1676 --------------KKVSQDLERQREITELKvkefENIKLQLQENHE--DEVKKVKAEVEDLKYLLDQSQKESQCLKSEL 1739
Cdd:TIGR02168 653 dlvrpggvitggsaKTNSSILERRREIEELE----EKIEELEEKIAEleKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1740 QAQKEansraptttmrnLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAhlnvqqivdrhtrelK 1819
Cdd:TIGR02168 729 SALRK------------DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA---------------E 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1820 TQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQG-KPLT 1898
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlAAEI 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1899 DNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGKK--------WQAKIEGIRNKLKEKEGEVFTL 1970
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSelrreleeLREKLAQLELRLEGLEVRIDNL 941
|
....*
gi 2462534476 1971 TKQLN 1975
Cdd:TIGR02168 942 QERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-763 |
1.82e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 27 NLLISLSKVEVNELKSEKQEN------VIHLFRITQSLMKMK----AQEVELALEEVEKAGEEQAKFeNQLKTKVMKLEN 96
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELqeelkeAEEELEELTAELQELeeklEELRLEVSELEEEIEELQKEL-YALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 97 ELEMAQQSAggrdtRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQL 176
Cdd:TIGR02168 303 QKQILRERL-----ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 177 CQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEanEKIEVQNQEMRKNLEESVQEMEKMTDE 256
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 257 YNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTDLLKS-----KNEEDDPIMVAVNAKVEEWKLILSSKDDEIIE----Y 327
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSlerlqENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegY 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 328 QQMLHN-LREKLKN----------------AQLDADKSNVMALQ----QGIQERDSQIKMLTEQVEQYTKEMEK------ 380
Cdd:TIGR02168 536 EAAIEAaLGGRLQAvvvenlnaakkaiaflKQNELGRVTFLPLDsikgTEIQGNDREILKNIEGFLGVAKDLVKfdpklr 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 381 --------NTCIIEDLKN--ELQRNKGASTL------------------SQQTHMKIQSTldilKEKTKEAERTAELAEA 432
Cdd:TIGR02168 616 kalsyllgGVLVVDDLDNalELAKKLRPGYRivtldgdlvrpggvitggSAKTNSSILER----RREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 433 DAREKDKELVEALKRLKDYEsgvygledavveiknckNQIKIRDREIEILTKEINKLELKISDFLDENEALRERVGLEPK 512
Cdd:TIGR02168 692 KIAELEKALAELRKELEELE-----------------EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 513 TMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQmaQERGKRSATSGLTTEDLNLTENISQGDRISER 592
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA--LREALDELRAELTLLNEEAANLRERLESLERR 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 593 KLDLLSLKNMSEAQSKN-----EIIAQEFLIKEAECRNADIELEHH----RSQAEQNEFLSRELIEKERDLERSRTVIAK 663
Cdd:TIGR02168 833 IAATERRLEDLEEQIEElsediESLAAEIEELEELIEELESELEALlnerASLEEALALLRSELEELSEELRELESKRSE 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 664 FQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDaslhLKAQVDQLTGRN 743
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR----LENKIKELGPVN 988
|
810 820
....*....|....*....|
gi 2462534476 744 EELRQELRESRKEAINYSQQ 763
Cdd:TIGR02168 989 LAAIEEYEELKERYDFLTAQ 1008
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1671-1964 |
3.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1671 LLVKLKKVSQDLERQREITELKVKEFENIKLQLQEnHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQaqKEANSRAP 1750
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAE-LEAELEELRLELEELELELEEAQAEEYELLAELA--RLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1751 TTTMRN----LVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRhTRELKTQVEDLN 1826
Cdd:COG1196 307 LEERRReleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE-LAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1827 ENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQgkpltdNKQSLIE 1906
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA------ELEEEEE 459
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462534476 1907 ELQRKVKKLENQLEGKVEEV-DLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKE 1964
Cdd:COG1196 460 ALLELLAELLEEAALLEAALaELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1378-1962 |
5.66e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 5.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1378 WHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQN 1457
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1458 EILNAAQKFEEATgsipdpslplpNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELR 1537
Cdd:COG1196 310 RRRELEERLEELE-----------EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1538 LRLpATAEREKLIAELGRKEMEPKSHHTLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEDLHILHH 1617
Cdd:COG1196 379 EEL-EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1618 RLELQADSSLNKFKQTAWDlmkqsptpvptnkhfirlAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFE 1697
Cdd:COG1196 458 EEALLELLAELLEEAALLE------------------AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1698 N-IKLQLQENHEDEVKKVKAEVEDL-----KYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEKQ 1771
Cdd:COG1196 520 RgLAGAVAVLIGVEAAYEAALEAALaaalqNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1772 QKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLN 1851
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1852 DLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLtsglqgkpltdnKQSLIEELQRKVKKLENQLEGKVEEVDLKPM 1931
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEER------------LEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
570 580 590
....*....|....*....|....*....|.
gi 2462534476 1932 KEKNAKEELIRWEEGKKWQAKIEGIRNKLKE 1962
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
114-884 |
6.70e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 6.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 114 RNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQL----ALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQK---Q 186
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAeryqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEeleK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 187 IDSQKETLLSRRGEDSDYRSQLSKKNYELIQylDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQ 266
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 267 TDNVIDQLKKENDHYQLQVQELTDLLKSKNEEDDPIMV---AVNAKVEEWKlilsskdDEIIEYQQMLHNLREKLKNAQL 343
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAeleEVDKEFAETR-------DELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 344 DADKSNVMALQQGIQERD--SQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTK 421
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADlnAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 422 EAERTAELAEADAR---EKDKELVEALKRLKDYESGVYGLEDAVVEIK------------NCKNQIKIRDREIEILTKEI 486
Cdd:TIGR02169 487 KLQRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGTVAQLGSVGeryataievaagNRLNNVVVEDDAVAKEAIEL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 487 NKlELKIS--DFLDENEALRERVGLEPKTM-------IDLTEFrnskhlkQQQYRAENQILLKE---IESLEEERlDLKK 554
Cdd:TIGR02169 567 LK-RRKAGraTFLPLNKMRDERRDLSILSEdgvigfaVDLVEF-------DPKYEPAFKYVFGDtlvVEDIEAAR-RLMG 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 555 KIRqMAQERGKRSATSGLTTedlnltenisqGDRISERKLDLLSLKNMSEAQSKNEIIaQEFLIKEAECRNADIELEHHR 634
Cdd:TIGR02169 638 KYR-MVTLEGELFEKSGAMT-----------GGSRAPRGGILFSRSEPAELQRLRERL-EGLKRELSSLQSELRRIENRL 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 635 SQAEQN-EFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGmkeiLQAIKEMQKDPDVKGGETSLIIPSLERL 713
Cdd:TIGR02169 705 DELSQElSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE----IENVKSELKELEARIEELEEDLHKLEEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 714 VNAIESKNAEgifdaslhlkAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSllrqsegsNVVFKG 793
Cdd:TIGR02169 781 LNDLEARLSH----------SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ--------ELQEQR 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 794 IDLPDGIAPSSASIINSQNEyLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTESKTIKE 873
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGK-KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
810
....*....|.
gi 2462534476 874 EKRKLEDQVQQ 884
Cdd:TIGR02169 922 LKAKLEALEEE 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
162-1012 |
7.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 7.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 162 LRRENKRLKKKNEQlCQDIIDYQKQIDSQKETLL-----SRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQN 236
Cdd:TIGR02168 198 LERQLKSLERQAEK-AERYKELKAELRELELALLvlrleELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 237 QEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELtdllKSKNEEDDPIMVAVNAKVEEWKLI 316
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL----ESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 317 LSSKDDEIIEYQQMLHNLREKLK--NAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQR 394
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEelEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 395 NKGASTlsQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLED----------AVVE 464
Cdd:TIGR02168 433 AELKEL--QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfseGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 465 IKNCKNQIK-IRDREIEILTKEiNKLELKISdfldenEALRERvgLEPKTMIDLTE-FRNSKHLKQQQYRAENQILLKEI 542
Cdd:TIGR02168 511 LLKNQSGLSgILGVLSELISVD-EGYEAAIE------AALGGR--LQAVVVENLNAaKKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 543 EsleeERLDLKKKIRQMAQERGKRSATSGLTTEDLNLT---ENISQGDRISERKLDLLSLKNMSEAQSKN-----EIIAQ 614
Cdd:TIGR02168 582 K----GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalSYLLGGVLVVDDLDNALELAKKLRPGYRIvtldgDLVRP 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 615 EFLI--KEAECRNADIELEhhrsqaeqneflsRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEM 692
Cdd:TIGR02168 658 GGVItgGSAKTNSSILERR-------------REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 693 QKDpdvkggetsliiPSLERLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKID 772
Cdd:TIGR02168 725 SRQ------------ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 773 HLEKETSLLRQsegsnvvfkgidlpdgIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSL 852
Cdd:TIGR02168 793 QLKEELKALRE----------------ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 853 LYKEYLSEKET----------WKTESKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQV 922
Cdd:TIGR02168 857 LAAEIEELEELieeleseleaLLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 923 NEKSLIRQYTTLVELERQLRKENEkqkNELLSMEAEVCEKIGCLQRfkemaifKIAALQKVvdNSVSLSELELANKQYNE 1002
Cdd:TIGR02168 937 RIDNLQERLSEEYSLTLEEAEALE---NKIEDDEEEARRRLKRLEN-------KIKELGPV--NLAAIEEYEELKERYDF 1004
|
890
....*....|
gi 2462534476 1003 LTAKYRDILQ 1012
Cdd:TIGR02168 1005 LTAQKEDLTE 1014
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
601-1402 |
1.54e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 601 NMSEAQSKNEIIAQEFLIKEAECRNADIELEHH-----RSQAEQNEFLSRELIEKERDlERSRTVIAKFQNKLKELVEEN 675
Cdd:PTZ00121 1025 NIEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEgkaeaKAHVGQDEGLKPSYKDFDFD-AKEDNRADEATEEAFGKAEEA 1103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 676 KQLEEGMKEILQAIKE-MQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESR 754
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEaKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARK 1183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 755 KEAINYSQQLAKAN--LKIDHLEKETSLLRQSEgsnvVFKGIDLPDGIAPSSASIINSQNEYlIHLLQELENKEKKLKNL 832
Cdd:PTZ00121 1184 AEEVRKAEELRKAEdaRKAEAARKAEEERKAEE----ARKAEDAKKAEAVKKAEEAKKDAEE-AKKAEEERNNEEIRKFE 1258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 833 EDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTESKTIKEEKRKLED--QVQQDAIKVKEYNNLLNALQMDSDEMKKIL 910
Cdd:PTZ00121 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEakKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 911 AENSRKITVLQVNEKSLIRQYTTLVELER--QLRKENEKQKNELLSMEAEVCEKIGCLQRFKEMAIFKIAALQKVvdnsv 988
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA----- 1413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 989 slselELANKQYNELTAKYRDILQKDnmlvqrtsnlehleceniSLKEQVESINKELEItKEKLHTIEQAWEQETKLGNE 1068
Cdd:PTZ00121 1414 -----AAAKKKADEAKKKAEEKKKAD------------------EAKKKAEEAKKADEA-KKKAEEAKKAEEAKKKAEEA 1469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1069 SSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSlkqmEERNFELETKFAELTKINLDAQKVEQM 1148
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA----EEAKKADEAKKAEEAKKADEAKKAEEK 1545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1149 LRdelADSVSKAVsdadrqrilELEKNEMELKVE-VSKLREISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDE 1227
Cdd:PTZ00121 1546 KK---ADELKKAE---------ELKKAEEKKKAEeAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1228 KSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQFSG 1307
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1308 ALPLAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNM--ENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEEL 1385
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
810
....*....|....*..
gi 2462534476 1386 RLQELKLNRELVKDKEE 1402
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDE 1790
|
|
| DUF1633 |
pfam07794 |
Protein of unknown function (DUF1633); This family contains sequences derived from a group of ... |
1796-1972 |
2.47e-07 |
|
Protein of unknown function (DUF1633); This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana. These sequences are highly similar and the region concerned is about 100 residues long.
Pssm-ID: 116408 [Multi-domain] Cd Length: 698 Bit Score: 56.43 E-value: 2.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1796 SATSQKEAHLNVQQivdrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQ----KKQKAYNKILRek 1871
Cdd:pfam07794 458 RAIREEDPHLGADQ-----DREVRFGAEGIVPGIERLKIELSTSKDLEKGYAEKIGFMEMEFGgleaDKQMARNQIHR-- 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1872 eeIDQENDELKRQIKRLTSGLQG--KPLTDNK-------QSLIEELQRK--VKKLENQLEGKVEEVDLK-PMKEKNAKEE 1939
Cdd:pfam07794 531 --LEEKKDELSKKVLDLTSIAQGakKAVHDAKvelaaayLKLLAGIKDKwvAKKEFTVLEGQAAEVESNlALIDQITKAA 608
|
170 180 190
....*....|....*....|....*....|...
gi 2462534476 1940 LIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTK 1972
Cdd:pfam07794 609 IDLTLEKPRFQAEIDDLEARCKLKEVSDFTLSK 641
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1267-1888 |
5.13e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 5.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1267 LRLEQKLDEKEQALYYARLEG-RNRAKHLRQTIQSLRRQFSGALplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNM 1345
Cdd:COG1196 216 RELKEELKELEAELLLLKLRElEAELEELEAELEELEAELEELE--AELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1346 ENKTLEMELKLKGLEELISTLKDTKGAQKVinwhmKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIV 1425
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEE-----ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1426 QQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATgsipdpslplpNQLEIALRKIKENIRIILETRATC 1505
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL-----------ERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1506 KSLEEKLKEKESALRLAEQNILSRDKVINELRLRLpatAEREKLIAELGRKEMEPKSHHTLKIAHQtiANMQARLNQ-KE 1584
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEA---ALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGvKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1585 EVLKKYQRLLEKAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQTAWDLMKQSPTPVPTnkhFIRLAEMEQTVAEQ 1664
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT---FLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1665 DDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKESQcLKSELQAQKE 1744
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA-GGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1745 ANSRAptttmRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVED 1824
Cdd:COG1196 669 ELLAA-----LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534476 1825 LNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQK-------AYNKILREKEEIDQENDELKRQIKRL 1888
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnllaieEYEELEERYDFLSEQREDLEEARETL 814
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
243-563 |
1.01e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 243 LEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTDLLKSKNEEDDpimvAVNAKVEEWKLILSSKDD 322
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE----KLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 323 EIIEYQQMLHNLREKLknAQLDADKSNVMALQQGIQ--ERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRNKGAST 400
Cdd:TIGR02169 752 EIENVKSELKELEARI--EELEEDLHKLEEALNDLEarLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 401 LSQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDRE-- 478
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEle 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 479 --IEILTKEINKLELKISDFLDENEALRERVGL---EPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEE---RL 550
Cdd:TIGR02169 910 aqIEKKRKRLSELKAKLEALEEELSEIEDPKGEdeeIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVlkrLD 989
|
330
....*....|...
gi 2462534476 551 DLKKKIRQMAQER 563
Cdd:TIGR02169 990 ELKEKRAKLEEER 1002
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1769-2485 |
2.96e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1769 EKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTD 1848
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK 1302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1849 NLNDLNNELQKKQKAyNKILREKEEIDQENDELKRQI---KRLTSGLQGKPLTDNKQSLIEELQRKVKKLENQLEGKVEE 1925
Cdd:PTZ00121 1303 KADEAKKKAEEAKKA-DEAKKKAEEAKKKADAAKKKAeeaKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1926 VDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEKLTLQRKLKTTGMTVDQV 2005
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2006 LGIRALESEKELEELKKRNLDLENDILYMRAHQALPRDSVVEDLHLQNRYLQEKLHALEKQFSKDTYSKPSQNQISGIES 2085
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2086 DDHCQREQELQK-ENLKLSSE--NIELKFQLEQANKDLPRLKNQVRDLKE--------MCEFLKKEKAEVQRKLGHVRGS 2154
Cdd:PTZ00121 1542 AEEKKKADELKKaEELKKAEEkkKAEEAKKAEEDKNMALRKAEEAKKAEEarieevmkLYEEEKKMKAEEAKKAEEAKIK 1621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2155 GRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKAsgiltsEKMANIEQENEKLKAELEKLKAhlgHQLSMHYESKTKGTE 2234
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA------EEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAE 1692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2235 KIIAEN------ERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQfaESRGPQLEGADSKSWKSIVVTRM 2308
Cdd:PTZ00121 1693 ALKKEAeeakkaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE--EAKKDEEEKKKIAHLKKEEEKKA 1770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2309 YETKlKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNeDLEQQIKILKHVPEGAETEQGLKRElqVLRLANHQLDKE 2388
Cdd:PTZ00121 1771 EEIR-KEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN-IIEGGKEGNLVINDSKEMEDSAIKE--VADSKNMQLEEA 1846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2389 KAELIHQIEANKDQSGAESTIPDADQLKEKIKDLETQLKMSDLEKQhLKEEIKKLKKELENFDPSFFEEIEDlKYNYKEE 2468
Cdd:PTZ00121 1847 DAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEK-IDKDDIEREIPNNNMAGKNNDIIDD-KLDKDEY 1924
|
730
....*....|....*...
gi 2462534476 2469 VKKNI-LLEEKVKKLSEQ 2485
Cdd:PTZ00121 1925 IKRDAeETREEIIKISKK 1942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
994-1303 |
3.02e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 994 ELANKQYNELTAKYRDILQKdnmLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQAWEQEtklgnessmdK 1073
Cdd:COG1196 221 ELKELEAELLLLKLRELEAE---LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1074 AKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDEL 1153
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1154 ADSVSKAVS-----DADRQRILELEKNEMELKVEVSKL-REISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDE 1227
Cdd:COG1196 368 LEAEAELAEaeeelEELAEELLEALRAAAELAAQLEELeEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534476 1228 KSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALyyARLEGRNRAKHLRQTIQSLRR 1303
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRG 521
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1811-2441 |
5.02e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 5.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1811 VDRHTRELKTQVEDLNEnllKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTS 1890
Cdd:pfam15921 76 IERVLEEYSHQVKDLQR---RLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1891 GLQG-----KPLTDNKQSLIEELQRKVKKLENQLEG------KVEEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNK 1959
Cdd:pfam15921 153 ELEAakclkEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1960 LKEKEGEVFTLTKQLNTLKD---------LFAKADK-EKLTLQRKLKTTGMTvDQVLGIRALESEKELEELKKRNLDLEN 2029
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSesqnkiellLQQHQDRiEQLISEHEVEITGLT-EKASSARSQANSIQSQLEIIQEQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2030 DILYMRAHQALPR--DSVVEDLHLQNRYLQEKLHALEKQF------------SKDTYSKPSQN---QISGIESDDHcQRE 2092
Cdd:pfam15921 312 NSMYMRQLSDLEStvSQLRSELREAKRMYEDKIEELEKQLvlanselteartERDQFSQESGNlddQLQKLLADLH-KRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2093 QEL---QKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKE-KAEVQRKLGHVRGSGRSGKTIP----EL 2164
Cdd:pfam15921 391 KELsleKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEKVSsltaQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2165 EKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQEN--EKLKAELEKLKAHLGHQLS--MHYESKTKGTEKIIAEN 2240
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERaiEATNAEITKLRSRVDLKLQelQHLKNEGDHLRNVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2241 ERLRKELKKETDAAEKLRIAKNNL------------EILNEKMTVQLEETGKRLQFAESRGPQlegaDSKSWKsivvTRM 2308
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILK----DKKDAK----IRE 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2309 YETKLKELETDIAK-------KNQSITDLKQ----LVKEATEREQKVNKYNEDLEQQIKILKHVPEGAETEQGlKRELQv 2377
Cdd:pfam15921 623 LEARVSDLELEKVKlvnagseRLRAVKDIKQerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN-KLKMQ- 700
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534476 2378 LRLANHQLDKEKAELIHQI----EANKDQSGAESTIP----DADQLKEKIKDLETQLKMSDLEKQHLKEEIK 2441
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEgsdgHAMKVAMGMQKQITakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKN 772
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1315-1920 |
5.05e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1315 EKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGaqkvinwhmKIEELRLQELKLNR 1394
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE---------EIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1395 ELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQmawdqREVDLERQLDIFDRQQNEILNAAQKFEEatgsip 1474
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE-----EYIKLSEFYEEYLDELREIEKRLSRLEE------ 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1475 dpslpLPNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQnILSRDKVINELRLRLpATAEREKLIAELG 1554
Cdd:PRK03918 322 -----EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRL-TGLTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1555 RKEmepKSHHTLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREE----QREIVKKHEEDLhilhhrlelqadsslnkf 1630
Cdd:PRK03918 395 ELE---KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKEL------------------ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1631 kqtawdlmkqsptpvpTNKHFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELK--VKEFENIKLQLQENHE 1708
Cdd:PRK03918 454 ----------------LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKelAEQLKELEEKLKKYNL 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1709 DEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRaptttmrnlVERLKSQLALKEKQQKALSRALLELRAEMTA 1788
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKK---------LAELEKKLDELEEELAELLKELEELGFESVE 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1789 AAEERIISATSQKEAHLNVQQIVDRHTRELK------TQVEDLNENLLKLKEALKTSKNRENSLTDNLND-----LNNEL 1857
Cdd:PRK03918 589 ELEERLKELEPFYNEYLELKDAEKELEREEKelkkleEELDKAFEELAETEKRLEELRKELEELEKKYSEeeyeeLREEY 668
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1858 QKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQG-----KPLTDNKQSL--IEELQRKVKKLENQLE 1920
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEErekakKELEKLEKALerVEELREKVKKYKALLK 738
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1615-1887 |
6.24e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 6.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1615 LHHRLELQADSSLNKFKQTawdlmkQSPTPVPTNKHFIRlAEM--EQTVAEQDDSLSSLLVKLKKVSQDLERQREitelK 1692
Cdd:COG4913 182 LRRRLGIGSEKALRLLHKT------QSFKPIGDLDDFVR-EYMleEPDTFEAADALVEHFDDLERAHEALEDARE----Q 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1693 VKEFEniklQLQENHEdEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAptttmrnLVERLKSQLALKEKQQ 1772
Cdd:COG4913 251 IELLE----PIRELAE-RYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA-------ELARLEAELERLEARL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1773 KALSRALLELRAEMT-------AAAEERIISATSQKEAHLNVQQIVDRHTRELKTQV----EDLNENLLKLKEALKTSKN 1841
Cdd:COG4913 319 DALREELDELEAQIRgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAEAAALLEALEE 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2462534476 1842 RENSLTDNLNDLNNELQKKQKAYNKILREKEE-------IDQENDELKRQIKR 1887
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASlerrksnIPARLLALRDALAE 451
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1585-1894 |
1.10e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1585 EVLKKYQRLLEKAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQTAWDLMKQSptpvptnkhfIRLAEMEQTVAEQ 1664
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELE----------AELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1665 DDSLSSLLVKLKKVSQD---LERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQA 1741
Cdd:COG1196 280 ELELEEAQAEEYELLAElarLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1742 QKEANSRAPTTTmRNLVERLKSQLALKEKQQKALSRALLELRAEmtAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQ 1821
Cdd:COG1196 360 LAEAEEALLEAE-AELAEAEEELEELAEELLEALRAAAELAAQL--EELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534476 1822 VEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQG 1894
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
639-958 |
1.11e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 639 QNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIE 718
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 719 sknaegifdaslHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSegsnvvfkgidlpd 798
Cdd:COG1196 306 ------------RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-------------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 799 giapssasiinsqneyLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKEtwktESKTIKEEKRKL 878
Cdd:COG1196 360 ----------------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE----AEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 879 EDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTTLVELERQLRKENEKQKNELLSMEAE 958
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1848-2433 |
1.15e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1848 DNLNDLNNELQKKQKAYNKILREKEEIDqenDELKRQIKRLTSGLQgkpLTDNKQSLIEELQRKVKKLENQLEgKVEEvd 1927
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIE---ELIKEKEKELEEVLR---EINEISSELPELREELEKLEKEVK-ELEE-- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1928 LKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLfaKADKEKLTLQRKLKTTGMTVDQVLG 2007
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL--KEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2008 IRALESEKELEELKKRNLDLENDilymrahqalprDSVVEDLHLQNRYLQEKLHALEKQFSKDTYSKPSQNQISGIESDD 2087
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEK------------EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2088 HCQREQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKEKAEV---QRKLGHVRGSGRSGKTIPEL 2164
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcGRELTEEHRKELLEEYTAEL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2165 EKTIGLMKKVVEKVQRENEQLKKASGILTSE-KMANIEQENEKLKAELEKLKAHLGHQLsmhyESKTKGTEKIIAENERL 2243
Cdd:PRK03918 462 KRIEKELKEIEEKERKLRKELRELEKVLKKEsELIKLKELAEQLKELEEKLKKYNLEEL----EKKAEEYEKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2244 RKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRGPQLEGADSKSWKSIVVTRMYETKLKELETDIAKK 2323
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2324 NQSITDLKQLVKEATEREQKVNKYNEDLEQQIKILKHVPEGAETEQ------GLKRELQVLRLANHQLDKEKAELIHQIE 2397
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEElreeylELSRELAGLRAELEELEKRREEIKKTLE 697
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 2462534476 2398 ANKDQSGA-----------ESTIPDADQLKEKIKDLETQLKMSDLEK 2433
Cdd:PRK03918 698 KLKEELEErekakkeleklEKALERVEELREKVKKYKALLKERALSK 744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1818-2427 |
1.28e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1818 LKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGlqgkpl 1897
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ------ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1898 tdnkqslIEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELirweegKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTL 1977
Cdd:TIGR02168 304 -------KQILRERLANLERQLEELEAQLEELESKLDELAEEL------AELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1978 KDLFAKADKEKLTLQRKLKTTGMTVDQvlgiralesekeleelkkrnldLENDILYMRAHqalprdsvVEDLHLQNRYLQ 2057
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLELQIAS----------------------LNNEIERLEAR--------LERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2058 EKLHALEKQFSKDtyskpsqnqisgiESDDHCQREQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFL 2137
Cdd:TIGR02168 421 QEIEELLKKLEEA-------------ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2138 KKEKAEVQRKLGHVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQEN-EKLKAELEKLKA 2216
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENlNAAKKAIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2217 HLGHQLSMHYESKTKGTEKIIAENERLRKE------LKKETDAAEKLRIAKNNLeiLNEKMTVQLEETG----KRLQFAE 2286
Cdd:TIGR02168 568 NELGRVTFLPLDSIKGTEIQGNDREILKNIegflgvAKDLVKFDPKLRKALSYL--LGGVLVVDDLDNAlelaKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2287 ----------SRGPQLEGADSKSWKSIVVTRM----YETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLE 2352
Cdd:TIGR02168 646 rivtldgdlvRPGGVITGGSAKTNSSILERRReieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534476 2353 QQIKILKHVPEGAETEQglkrelQVLRLANHQLDKEKAELIHQIEANKDQSGAEStiPDADQLKEKIKDLETQLK 2427
Cdd:TIGR02168 726 RQISALRKDLARLEAEV------EQLEERIAQLSKELTELEAEIEELEERLEEAE--EELAEAEAEIEELEAQIE 792
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
309-879 |
1.68e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 309 KVEEWKLILSSKDDEIIEYQQMLHNLREKLK--NAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIE 386
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEelEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 387 DLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGvygLEDAVVEIK 466
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE---LAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 467 NCKNQIKIRDREIEILTKEINKLELKISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLE 546
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 547 EERLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENIS---QGDRISERKLDLLSLKNMSEAQSKNEIIAQEFLIKEAEC 623
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEadyEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 624 RNADIELEHHRSQAEQNEFLSRELieKERDLERsrtviAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGET 703
Cdd:COG1196 543 ALAAALQNIVVEDDEVAAAAIEYL--KAAKAGR-----ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 704 SLIIPSLerLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQ 783
Cdd:COG1196 616 YVLGDTL--LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 784 SEGSNVVfkgidlpdgiapSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKET 863
Cdd:COG1196 694 ELEEALL------------AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
570
....*....|....*.
gi 2462534476 864 WKTESKTIKEEKRKLE 879
Cdd:COG1196 762 LEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-563 |
2.63e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 21 QEELADNLLISLSKVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFEnQLKTKVMKLENELEM 100
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 101 AQQsaggrDTRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDI 180
Cdd:COG1196 300 LEQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 181 IDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRM 260
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 261 KAIVHQTDNVIDQLKKENDHYQLQVQELTDLL---KSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEyqQMLHNLREK 337
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELaeaAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 338 LKNAQLDADKSNVMALQQGIQERDSQIKMLteqveqytkemekntciIEDLKnelQRNKGASTLSQQTHMKIQSTLDILK 417
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAA-----------------IEYLK---AAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 418 EKTKEAERTAELAEadarekdkELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKISDFL 497
Cdd:COG1196 593 ARGAIGAAVDLVAS--------DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTG 664
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534476 498 DENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQER 563
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1043-1836 |
3.75e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 3.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1043 KELEITKEKLHTIEQAWEQETKLGNESSMDKAKKSITNSDIVSISKKITmlEMKELNERQRAEHCQKMYEHLRTSlkqme 1122
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAE--DARKAEEARKAEDARKAEEARKAE----- 1149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1123 ernfelETKFAELTKINLDAQKVEQMLRDELADSVSKAVSDADRQRILELEKNEMELKVEVSKLREIsdiARRQVEILNA 1202
Cdd:PTZ00121 1150 ------DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEE---ERKAEEARKA 1220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1203 QQQSRDKEVESLrmqllDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYY 1282
Cdd:PTZ00121 1221 EDAKKAEAVKKA-----EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1283 ARLEGRNRAKHLRQTIQSLRRqfsgalplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEEL 1362
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKK--------ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1363 ISTLKDTKGAQKVINWHMKIEELRLQElklnrELVKDKEEIKylnniiseyeRTISSLEEEIVQQNKFHEERQMAWDQRE 1442
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKAD-----EAKKKAEEDK----------KKADELKKAAAAKKKADEAKKKAEEKKK 1432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1443 VDLERQLDIFDRQQNEilnAAQKFEEAtgsipdpslplpnqleialrKIKENIRIILETRATCKSLEEKLKEKESALRLA 1522
Cdd:PTZ00121 1433 ADEAKKKAEEAKKADE---AKKKAEEA--------------------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1523 EQNILSRDKViNELRlrlpaTAEREKLIAELGRKEMEPKSHHTLKIAHQTIANMQARLNQ---KEEVLKKYQRLLEKARE 1599
Cdd:PTZ00121 1490 KKAEEAKKKA-DEAK-----KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkKADELKKAEELKKAEEK 1563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1600 EQREIVKKHEEDLHILHHRLELQADSSlnkfKQTAWDLMKQSPTPVPTNKHFIRLAEMEQTVAEQddslssllvklkkVS 1679
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAE----EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-------------LK 1626
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1680 QDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKEsQCLKSELQAQKEANSRAPTTTMRNLVE 1759
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE-EAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534476 1760 RLKSQLALKEKQQKALSRALLELRAEMTAAAEERiiSATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEAL 1836
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA--EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1404-2217 |
4.54e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 4.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1404 KYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKfeeatgsipdpslplPNQ 1483
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRR---------------ESQ 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1484 LEIALRKIKENIRIILETRATCKslEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAE-------REKLIAELGRK 1556
Cdd:pfam15921 139 SQEDLRNQLQNTVHELEAAKCLK--EDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEasgkkiyEHDSMSTMHFR 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1557 EMEPKSHHTLKIAHQTIANMQARLNQKEEVLK--------KYQRLLEKAREEQREIVKKHEEDLHILHHRLElQADSSLN 1628
Cdd:pfam15921 217 SLGSAISKILRELDTEISYLKGRIFPVEDQLEalksesqnKIELLLQQHQDRIEQLISEHEVEITGLTEKAS-SARSQAN 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1629 KFKQTAWDLMKQSPTpvpTNKHFIR-LAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQE-- 1705
Cdd:pfam15921 296 SIQSQLEIIQEQARN---QNSMYMRqLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQes 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1706 -NHEDEVKKVkaevedlkyLLDQSQKEsqclkSELQAQKEANSRAPTTTMRN--LVERLKSQLALKEKQQKALSRALLEL 1782
Cdd:pfam15921 373 gNLDDQLQKL---------LADLHKRE-----KELSLEKEQNKRLWDRDTGNsiTIDHLRRELDDRNMEVQRLEALLKAM 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1783 RAEMTAAAEERIISATSQKEAHLNVQQivdrhtreLKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQK 1862
Cdd:pfam15921 439 KSECQGQMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1863 AynkilrekeeidqendelkrqikrltsglqgkpltdnkqslIEELQRKVKKLENQLEGKVEEVDlkpmKEKNAKEELir 1942
Cdd:pfam15921 511 A-----------------------------------------IEATNAEITKLRSRVDLKLQELQ----HLKNEGDHL-- 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1943 weegKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADK-------EKLTLQRKLKTTGMTVdQVLGIRALESEK 2015
Cdd:pfam15921 544 ----RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRtagamqvEKAQLEKEINDRRLEL-QEFKILKDKKDA 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2016 ELEELKKRNLDLENDILYMrAHQALPRDSVVEDLHlqnrylQEKLHALEKqfskdtySKPSQNQISGIESDdhcqreQEL 2095
Cdd:pfam15921 619 KIRELEARVSDLELEKVKL-VNAGSERLRAVKDIK------QERDQLLNE-------VKTSRNELNSLSED------YEV 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2096 QKENLKLSSENIE-----LKFQLEQANKDLPRLKNQVRDLKEMCEFLKKEKAEVQRKLGHVRGSgrsgktIPELEKTIGL 2170
Cdd:pfam15921 679 LKRNFRNKSEEMEtttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ------IDALQSKIQF 752
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 2462534476 2171 MKKVVEKVQRENEQLKKASGILtSEKMANIEQENEKLKAELEKLKAH 2217
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKL-SQELSTVATEKNKMAGELEVLRSQ 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-486 |
5.11e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 75 KAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEE 154
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEE------------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 155 AENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEV 234
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 235 QNQEMRKNLEESVQEMEKMTDEynrMKAIVHQtdnvIDQLKKENDHYQLQVQELTDLLKSKNEEddpiMVAVNAKVEEWK 314
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSED---IESLAAE----IEELEELIEELESELEALLNERASLEEA----LALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 315 LILSSKDDEIIEYQQMLHNLREKLKNAQLDadksnvmaLQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQR 394
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELR--------LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 395 NkgastlsqqthmkiqstLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIkncknqiki 474
Cdd:TIGR02168 973 R-----------------LKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI--------- 1026
|
410
....*....|..
gi 2462534476 475 rDREIEILTKEI 486
Cdd:TIGR02168 1027 -DREARERFKDT 1037
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1764-2434 |
7.96e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 7.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1764 QLALKEKQQKALSRALLELRAE----MTAAAEERIISATSQKE------AHLNVQQIVDRHTRELKTQVEDLNENLLKLK 1833
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLrsqlLTLCTPCMPDTYHERKQvlekelKHLREALQQTQQSHAYLTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1834 EALKTSKNRENSLTDNLNDLNN-----ELQKKQKAYNKILREKEEIDQE----NDELKRQIKRLTSGLQGKPLTDNKQSL 1904
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEEtqeriNRARKAAPLAAHIKAVTQIEQQaqriHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1905 IEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLK----------EKEGEVFTLTKQL 1974
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQslckeldilqREQATIDTRTSAF 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1975 NTLKDLFAKADKE-----KLTLQRKLKTTGMTVDQVLGIRALESEKELEELKKRNLDLENDILYMRAHQALPRDSVVEDL 2049
Cdd:TIGR00618 420 RDLQGQLAHAKKQqelqqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLEL 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2050 HLQNRYLQEKLHALEKQFSKDTYSKPSQNQISGIEsDDHCQREQELQKENLKLSSEN---IELKFQLEQANKDLPRLKNQ 2126
Cdd:TIGR00618 500 QEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE-QTYAQLETSEEDVYHQLTSERkqrASLKEQMQEIQQSFSILTQC 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2127 VRDLKEMCEFLKKEKAEVQrklghvrgsgrsgktiPELEKTIGLMKKVVEKVQRENEQLKKASGIL-TSEKMANIEQENE 2205
Cdd:TIGR00618 579 DNRSKEDIPNLQNITVRLQ----------------DLTEKLSEAEDMLACEQHALLRKLQPEQDLQdVRLHLQQCSQELA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2206 KLKAELEKLKAHLGHQLSMHYESKTKGTEKIIAEneRLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGK-RLQF 2284
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVREHALSIRVLPKELLA--SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEyDREF 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2285 AE------SRGPQLEGADSKSWKSI-VVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKI 2357
Cdd:TIGR00618 721 NEienassSLGSDLAAREDALNQSLkELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHL 800
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462534476 2358 LKHVPegAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTI--PDADQLKEKIKDLETQLKMSDLEKQ 2434
Cdd:TIGR00618 801 LKTLE--AEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-679 |
8.46e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 8.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 356 GIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRnkgastLSQQTHMKIQstLDILKEKTKEAERTAELAEADAR 435
Cdd:TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLER------LRREREKAER--YQALLKEKREYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 436 EKDKELVEA-----LKRLKDYESGVYGLEDAVVEIKNCKNQI--KIRD----------REIEILTKEINKLELKISDFLD 498
Cdd:TIGR02169 236 ERQKEAIERqlaslEEELEKLTEEISELEKRLEEIEQLLEELnkKIKDlgeeeqlrvkEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 499 ENEALRERVG----LEPKTMIDLTEFRNskhlKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQE-RGKRSATSGLT 573
Cdd:TIGR02169 316 ELEDAEERLAkleaEIDKLLAEIEELER----EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEfAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 574 TEDLNLTENISQGDRISERKLDLLSLKNMSEAQSKNEIIAQEFLIKEAECRNADIELEhHRSQAEQNEFLSRELIEKERD 653
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE-IKKQEWKLEQLAADLSKYEQE 470
|
330 340
....*....|....*....|....*.
gi 2462534476 654 LERSRTVIAKFQNKLKELVEENKQLE 679
Cdd:TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAEAE 496
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
34-428 |
1.45e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 34 KVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfl 113
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE------------- 1631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 114 RNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKqidsqKET 193
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-----AEE 1706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 194 LLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKievQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQ 273
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK---KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 274 -LKKENDHYQLQVQELTDLLKSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQMlhnLREKLKNAQLDADKSNVMA 352
Cdd:PTZ00121 1784 eLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM---QLEEADAFEKHKFNKNNEN 1860
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534476 353 LQQGIQERDSQIKmlTEQVEQYTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTKEAERTAE 428
Cdd:PTZ00121 1861 GEDGNKEADFNKE--KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETRE 1934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
217-1006 |
1.57e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 217 QYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEynRMKAIVHQtdnvidQLKKEndhyqLQVQELTDLLKSKN 296
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE--REKAERYQ------ALLKE-----KREYEGYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 297 EEDDPImVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKLK--NAQLDADKSNVM-ALQQGIQERDSQIKMLTEQVEQ 373
Cdd:TIGR02169 234 ALERQK-EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEelNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 374 YTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYES 453
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 454 GVYGLEDAVVEIKNCKNQIKIRDREIEI----LTKEINKLELKISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQ 529
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEeladLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 530 QYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLN-LTENISQGDRISERKldLLSLKNMSEAQSK 608
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgVHGTVAQLGSVGERY--ATAIEVAAGNRLN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 609 NEIIAQEFLIKEAecrnadIELEHHRsQAEQNEFLS-RELIEKERDLERSRTviAKFQNKLKELVEENKQLEEGMKEILQ 687
Cdd:TIGR02169 551 NVVVEDDAVAKEA------IELLKRR-KAGRATFLPlNKMRDERRDLSILSE--DGVIGFAVDLVEFDPKYEPAFKYVFG 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 688 ---AIKEMQKDPDVKGG------ETSLIIPSLERLVNAIESKNAEGI----FDASLHLKAQVDQLTGRNEELRQELRESR 754
Cdd:TIGR02169 622 dtlVVEDIEAARRLMGKyrmvtlEGELFEKSGAMTGGSRAPRGGILFsrsePAELQRLRERLEGLKRELSSLQSELRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 755 KEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNvvfkgidlpdgiapssASIINSQNEYLIHLLQELENKEKKLKNLED 834
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL----------------KERLEELEEDLSSLEQEIENVKSELKELEA 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 835 SLEDYNRKFAVIRHQQSLLYKEYLSEKetwkteSKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENS 914
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLSHSR------IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 915 RKITVLQVNEKSLIRQYTTLVELERQLRKENEKQKNELLSMEaevcEKIGCLQRFKEMAIFKIAALQKVVDNSVslSELE 994
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE----SRLGDLKKERDELEAQLRELERKIEELE--AQIE 913
|
810
....*....|..
gi 2462534476 995 LANKQYNELTAK 1006
Cdd:TIGR02169 914 KKRKRLSELKAK 925
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
998-1727 |
1.58e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 998 KQYNELTAKYRDiLQKDNMLVQRTSNLEHLEceniSLKEQVESINKELEITKEKLHTIEQAWEQetkLGNESSMDKAKKS 1077
Cdd:TIGR02168 213 ERYKELKAELRE-LELALLVLRLEELREELE----ELQEELKEAEEELEELTAELQELEEKLEE---LRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1078 ITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELADSV 1157
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1158 SKAV-----SDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQ------SD 1226
Cdd:TIGR02168 365 AELEelesrLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaelEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1227 EKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALyyARLEGRNRAkhLRQTIQSlRRQFS 1306
Cdd:TIGR02168 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ--ENLEGFSEG--VKALLKN-QSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1307 GALPLAQQ-----EKFSKTM------------IQLQNDKLKIMQEMKN-----------SQQEHRNMENKTLEMELKLKG 1358
Cdd:TIGR02168 520 GILGVLSElisvdEGYEAAIeaalggrlqavvVENLNAAKKAIAFLKQnelgrvtflplDSIKGTEIQGNDREILKNIEG 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1359 LEELISTL-KDTKGAQKVIN---WHMKI-------EELRLQELKLNRELVKD------------------------KEEI 1403
Cdd:TIGR02168 600 FLGVAKDLvKFDPKLRKALSyllGGVLVvddldnaLELAKKLRPGYRIVTLDgdlvrpggvitggsaktnssilerRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1404 KYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQ---REVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSLPL 1480
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQlrkELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1481 PNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAER-EKLIAELGRKEME 1559
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERlESLERRIAATERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1560 pkshhtLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQREIVK---KHEEDLHILHHRLElQADSSLNKFKQtawd 1636
Cdd:TIGR02168 840 ------LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNeraSLEEALALLRSELE-ELSEELRELES---- 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1637 lmkqsptpvptnkhfiRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQRE-ITELKVKEFENIkLQLQENHEDEVKKVK 1715
Cdd:TIGR02168 909 ----------------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQErLSEEYSLTLEEA-EALENKIEDDEEEAR 971
|
810
....*....|..
gi 2462534476 1716 AEVEDLKYLLDQ 1727
Cdd:TIGR02168 972 RRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1178-1988 |
1.59e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1178 ELKVEVSKLREISDIARRQVEILNAQQQSRDKEVESL---RMQLLDYQAQSDEKS------LIAKLHQHNVSLQLSEATA 1248
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLrreREKAERYQALLKEKReyegyeLLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1249 LGKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQFSGALplAQQEKFSKTMIQLQNDK 1328
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE--RSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1329 LKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVinwhmKIEELRLQELKLNRELVKDKEEIKYLNN 1408
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-----ELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1409 IISEYERTISSLEEEIVQqnkfheeRQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSLPLpNQLEIAL 1488
Cdd:TIGR02169 400 EINELKRELDRLQEELQR-------LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-SKYEQEL 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1489 RKIKENIRIILETRatcKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAereKLIAELGRKEMEpkshHTLKI 1568
Cdd:TIGR02169 472 YDLKEEYDRVEKEL---SKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH---GTVAQLGSVGER----YATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1569 AHQTIANMQARLNQKEEVLKKYQRLLeKAREEQREI------VKKHEEDLHILHhrlelqadssLNKFKQTAWDLMKQSP 1642
Cdd:TIGR02169 542 EVAAGNRLNNVVVEDDAVAKEAIELL-KRRKAGRATflplnkMRDERRDLSILS----------EDGVIGFAVDLVEFDP 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1643 TPVPTNKHFIRlaemEQTVAEQDDSLSSLLVKLKKVSQD---LERQREITELKVKEFENIKLQLQEnhEDEVKKVKAEVE 1719
Cdd:TIGR02169 611 KYEPAFKYVFG----DTLVVEDIEAARRLMGKYRMVTLEgelFEKSGAMTGGSRAPRGGILFSRSE--PAELQRLRERLE 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1720 DLKYLLDQSQKESQCLKSELQAQKEANSRAP--TTTMRNLVERL-------KSQLALKEKQQKALSRALLELRAEMTAAA 1790
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSDASrkIGEIEKEIEQLeqeeeklKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1791 EERiisATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILRE 1870
Cdd:TIGR02169 765 ARI---EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1871 KEEIDQENDELKRQIkrltsglqgkpltDNKQSLIEELQRKVKKLENQLEgkveevDLKPMKEKNAKEELIRWEEGKKWQ 1950
Cdd:TIGR02169 842 RIDLKEQIKSIEKEI-------------ENLNGKKEELEEELEELEAALR------DLESRLGDLKKERDELEAQLRELE 902
|
810 820 830
....*....|....*....|....*....|....*...
gi 2462534476 1951 AKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEK 1988
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
819-1556 |
2.05e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 819 LQELENKEKKLKNLEDSLEDYNRKFAVIRHQ--QSLLYKEYLSEKET-----WKTESKTIKEEKRKLEDQVQQDAIKVKE 891
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQaeKAERYKELKAELRElelalLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 892 YNNLLNALQMDSDEMKKILAENSRKITVLQvneKSLIRQYTTLVELERQLRKENEKQKNeLLSMEAEVCEKIGCLQRFKE 971
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQ---KELYALANEISRLEQQKQILRERLAN-LERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 972 MAIFKIAALQKVVDnsVSLSELELANKQYNELTAKYRDILQKdnmLVQRTSNLEHLECENISLKEQVESINKELEITKEK 1051
Cdd:TIGR02168 334 ELAEELAELEEKLE--ELKEELESLEAELEELEAELEELESR---LEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1052 LHTIEQAWE--QETKLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQME------- 1122
Cdd:TIGR02168 409 LERLEDRRErlQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAErelaqlq 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1123 ------ERNFELETKFAELTKINLDAQKVEQMLRDELADSVS------KAVSDADRQRILELE-KNEMELKVEVSKLRE- 1188
Cdd:TIGR02168 489 arldslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyeAAIEAALGGRLQAVVvENLNAAKKAIAFLKQn 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1189 ---------ISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSdEKSLIAKLHQHNVSLQLSEATALGK-------- 1251
Cdd:TIGR02168 569 elgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL-RKALSYLLGGVLVVDDLDNALELAKklrpgyri 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1252 -------------------------------LESITSKLQKMEAYNLRLEQKLDEKEQALYyarlEGRNRAKHLRQTIQS 1300
Cdd:TIGR02168 648 vtldgdlvrpggvitggsaktnssilerrreIEELEEKIEELEEKIAELEKALAELRKELE----ELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1301 LRRQFSGALP-----LAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKV 1375
Cdd:TIGR02168 724 LSRQISALRKdlarlEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1376 I--NWHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFD 1453
Cdd:TIGR02168 804 AldELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1454 RQQNEILNAAQKFEEATGSIpdpslplpNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESAL--RLAEQNILSRDK 1531
Cdd:TIGR02168 884 SLEEALALLRSELEELSEEL--------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqeRLSEEYSLTLEE 955
|
810 820
....*....|....*....|....*
gi 2462534476 1532 VINELRLRLPATAEREKLIAELGRK 1556
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENK 980
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1484-1989 |
2.19e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1484 LEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPAT-AEREKLIAELGRKEMEPKS 1562
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELrEELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1563 HHTLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEdlhilhHRLELQADSSLNKFKqtawdlmkqsp 1642
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE------LKEKAEEYIKLSEFY----------- 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1643 tpvptNKHFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITElKVKEFENIKLQLQENHE--DEVKKVKAEVED 1720
Cdd:PRK03918 303 -----EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKK-KLKELEKRLEELEERHElyEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1721 LKYLLDQSQKESqcLKSELQAQKEANsraptTTMRNLVERLKSQLALKEKQQKALSRALLELR-AEMTAAAEERIISATS 1799
Cdd:PRK03918 377 LKKRLTGLTPEK--LEKELEELEKAK-----EEIEEEISKITARIGELKKEIKELKKAIEELKkAKGKCPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1800 QKEahlnvqqIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDN--------LNDLNNELQKKQKAYN-----K 1866
Cdd:PRK03918 450 RKE-------LLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliklkeLAEQLKELEEKLKKYNleeleK 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1867 ILREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKE------------- 1933
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEleerlkelepfyn 602
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534476 1934 -----KNAKEEL-IRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEKL 1989
Cdd:PRK03918 603 eylelKDAEKELeREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL 664
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1709-1918 |
2.23e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1709 DEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNL-VERLKSQLALKEKQQKALSRALLELRAEMT 1787
Cdd:PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLsLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1788 AA--AEERIISATSQkeahlNVQQivdrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTdnlnDLNNELQKKQKAYN 1865
Cdd:PRK11281 153 SLqtQPERAQAALYA-----NSQR-----LQQIRNLLKGGKVGGKALRPSQRVLLQAEQALL----NAQNDLQRKSLEGN 218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534476 1866 KILREKEEidQENDELKRQIKRLTSGLQgkpltdNKQSLI-----EELQRKVKKLENQ 1918
Cdd:PRK11281 219 TQLQDLLQ--KQRDYLTARIQRLEHQLQ------LLQEAInskrlTLSEKTVQEAQSQ 268
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1653-1978 |
2.39e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1653 RLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQENHEDEvKKVKAEVEDLKYLLDQSQKES 1732
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE-EKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1733 QCLKSELQ--AQKEANSRAPTTTMRNLVERLKSQLALKEKQQK-ALSRALLELRAEMTAAAE--ERIISATSQKEAHLN- 1806
Cdd:TIGR02169 754 ENVKSELKelEARIEELEEDLHKLEEALNDLEARLSHSRIPEIqAELSKLEEEVSRIEARLReiEQKLNRLTLEKEYLEk 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1807 -----VQQIVDRHTR--ELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQEND 1879
Cdd:TIGR02169 834 eiqelQEQRIDLKEQikSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1880 ELKRQIKRLTSGLQG-----KPLTDNKQSLIEE---------LQRKVKKLENQLEgKVEEVDLKPMKEknakeelirWEE 1945
Cdd:TIGR02169 914 KKRKRLSELKAKLEAleeelSEIEDPKGEDEEIpeeelsledVQAELQRVEEEIR-ALEPVNMLAIQE---------YEE 983
|
330 340 350
....*....|....*....|....*....|...
gi 2462534476 1946 GKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLK 1978
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1676-1992 |
3.61e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 45.90 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1676 KKVSQDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQS----QKESQCLKSELQAQKEANSRAPT 1751
Cdd:pfam09731 121 KSEQEKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAeisrEKATDSALQKAEALAEKLKEVIN 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1752 TTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVdrhtRELKTQVEDLNENLlk 1831
Cdd:pfam09731 201 LAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQ----QELVSIFPDIIPVL-- 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1832 lKEALKTSKNRENSLTD----NLNDLNNELQKKQKAYNKilREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQsLIEE 1907
Cdd:pfam09731 275 -KEDNLLSNDDLNSLIAhahrEIDQLSKKLAELKKREEK--HIERALEKQKEELDKLAEELSARLEEVRAADEAQ-LRLE 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1908 LQRKV--------KKLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKD 1979
Cdd:pfam09731 351 FEREReeiresyeEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGRLLKLNELLANLKGLEKATS 430
|
330
....*....|...
gi 2462534476 1980 LFAKADKEKLTLQ 1992
Cdd:pfam09731 431 SHSEVEDENRKAQ 443
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1654-2010 |
3.83e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1654 LAEMEQTVAEQD---DSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQK 1730
Cdd:TIGR02169 179 LEEVEENIERLDliiDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1731 ESQCLKSELQAQKEansrapttTMRNLVERLKsqlALKEKQQKALSRALLELRAEMtAAAEERIISATSQKEAHLNVQQI 1810
Cdd:TIGR02169 259 EISELEKRLEEIEQ--------LLEELNKKIK---DLGEEEQLRVKEKIGELEAEI-ASLERSIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1811 VDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIkrlts 1890
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI----- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1891 glqgKPLTDNKQSLIEELQRKVKKLEnQLEGKVEEVDLKPMKEKNAKEELIrwEEGKKWQAKIEGIRNKLKEKEGEVFTL 1970
Cdd:TIGR02169 402 ----NELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKA--LEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2462534476 1971 TKQLNTLKDLFAKADKEkltLQRKLKTTGMTVDQVLGIRA 2010
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRE---LAEAEAQARASEERVRGGRA 511
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
415-1286 |
4.03e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 415 ILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESgvygLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKIS 494
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKL----KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 495 DFLDENEALRERvglepktMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRqmaQERGKRSATSGLTT 574
Cdd:pfam02463 240 DLLQELLRDEQE-------EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEE---EELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 575 EDLNLTENISQGDRISERKLDLLSLKNMSEAQSKNEIIAQEFLIKEAECRNADIELEHHRSQAEQNEFLSRELIEKERDL 654
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 655 ERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDASLHLKA 734
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 735 QVDQLTGRNEELR---QELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNVVFKGIDLPDGIAPSSASIINSQ 811
Cdd:pfam02463 470 SEDLLKETQLVKLqeqLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAV 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 812 NEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTEsktIKEEKRKLEDQVQQDAIKVKE 891
Cdd:pfam02463 550 IVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNL---AQLDKATLEADEDDKRAKVVE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 892 YNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTTLVELERQLRKENEKQKNELLSMEAEVcekigcLQRFKE 971
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI------LRRQLE 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 972 MAIFKIAALQKVVDNSVSLSELELANKQYNELTAKYRDILQKDNmlvqrtsNLEHLECENISLKEQVESINKELEITKEK 1051
Cdd:pfam02463 701 IKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQK-------IDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1052 LHTIEQAWEQETKLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEhcQKMYEHLRTSLKQMEERNFELETK 1131
Cdd:pfam02463 774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQE--EKIKEEELEELALELKEEQKLEKL 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1132 FAELTKINLDAQKVEQMLRDELADSVSKAVSDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSRDKEV 1211
Cdd:pfam02463 852 AEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILL 931
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534476 1212 ESLRMQLLDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLE 1286
Cdd:pfam02463 932 KYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
36-277 |
5.18e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 36 EVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMAQQSAGGR-----DT 110
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLakleaEI 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 111 RFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQ 190
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 191 KETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNV 270
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
....*..
gi 2462534476 271 IDQLKKE 277
Cdd:TIGR02169 492 LAEAEAQ 498
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-770 |
6.09e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 6.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 87 LKTKVMKLENELEMAQQSAGGRDTRFLRNEICQLEKQLEQKDREL----EDMEKELEKEKKVNEQLALRNEEAENENSKL 162
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEItgltEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 163 RRENKRLKKKNEQLCQDIIDYQKQIDSQKETLlsrrgedsdyRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKN 242
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEEL----------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 243 LEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTDLLKSKNEEDDPIMvavnakveewklilsskdd 322
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM------------------- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 323 eiiEYQqmlhnlreklknaqldadksnvMALQQGIQERDSQIKMLTEQVEQyTKEMEKNtcIIEDLknelqrnkgasTLS 402
Cdd:pfam15921 447 ---ERQ----------------------MAAIQGKNESLEKVSSLTAQLES-TKEMLRK--VVEEL-----------TAK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 403 QQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEIL 482
Cdd:pfam15921 488 KMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEIL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 483 TKEI-NKLELKISDFLDENEALRERVGLEPKTmidltefrNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQ 561
Cdd:pfam15921 568 RQQIeNMTQLVGQHGRTAGAMQVEKAQLEKEI--------NDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 562 ERGKRsatsglttedLNLTENISQgdrisERKLDLLSLKNmseaqSKNEI--IAQEFLIKEAECRNADIELEHHRSQaeq 639
Cdd:pfam15921 640 AGSER----------LRAVKDIKQ-----ERDQLLNEVKT-----SRNELnsLSEDYEVLKRNFRNKSEEMETTTNK--- 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 640 nefLSRELIEKERDLERSRTVIakfqnklkelveenKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIES 719
Cdd:pfam15921 697 ---LKMQLKSAQSELEQTRNTL--------------KSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTN 759
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 720 KNAEGIFDASLHLK---------AQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLK 770
Cdd:pfam15921 760 ANKEKHFLKEEKNKlsqelstvaTEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQ 819
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1702-1894 |
6.60e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 6.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1702 QLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRApTTTMRNL---VERLKSQLALKEKQQKALSRA 1778
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL-ARRIRALeqeLAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1779 LLELR---AEMTAAAEER--------IISATSQKEAhLNVQQIVDRHTRELKTQVEDLNEN---LLKLKEALKTSKNREN 1844
Cdd:COG4942 99 LEAQKeelAELLRALYRLgrqpplalLLSPEDFLDA-VRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462534476 1845 SLTDNLNDLNNELQKKQKAYNKIL----REKEEIDQENDELKRQIKRLTSGLQG 1894
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLarleKELAELAAELAELQQEAEELEALIAR 231
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1001-1341 |
1.02e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1001 NELTAKYRDILQKDNMLVQRTSNLEHLECENISLKEQVESINKELEiTKEKLHTIEQAWEQEtklgnessMDKakksitN 1080
Cdd:pfam17380 268 NEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVE-RRRKLEEAEKARQAE--------MDR------Q 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1081 SDIVSISKKITMLEMKELnERQRAEHCQKMYEHLRtslkqMEERNFELEtKFAELTKINLDAQKVEQMLRDELADSVSKA 1160
Cdd:pfam17380 333 AAIYAEQERMAMEREREL-ERIRQEERKRELERIR-----QEEIAMEIS-RMRELERLQMERQQKNERVRQELEAARKVK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1161 VSDADRQRILELEKNEMEL------KVEVSKLREISDIARRQVEILNAQQQSRDKEVESLRMQlldyQAQSDEKSLIAKL 1234
Cdd:pfam17380 406 ILEEERQRKIQQQKVEMEQiraeqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ----EEERKRKKLELEK 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1235 HQHNVSLQLSEATALGKLESITSKLQKMEAYNLR--LEQKLDEKEQALYYArlEGRNRAKHLRQTIQSL--RRQFSGALP 1310
Cdd:pfam17380 482 EKRDRKRAEEQRRKILEKELEERKQAMIEEERKRklLEKEMEERQKAIYEE--ERRREAEEERRKQQEMeeRRRIQEQMR 559
|
330 340 350
....*....|....*....|....*....|.
gi 2462534476 1311 LAQQEKFSKTMIQLQNDKLKIMQEMKNSQQE 1341
Cdd:pfam17380 560 KATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
106-373 |
1.44e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 106 GGRDTRFLRNEICQLEKQLEQKDRELEDMEKELEK-EKKVNEQLALRNE------EAENENSKLRRENKRLKKKNEQLCQ 178
Cdd:TIGR02169 658 GSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSlQSELRRIENRLDElsqelsDASRKIGEIEKEIEQLEQEEEKLKE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 179 DIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTL--TEANEKIEVQNQEMRKnLEESVQEMEKMTDE 256
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSK-LEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 257 YNRMKAIVHQTDNVIDQLKKEndhyqlqVQELTDLLKSKNEEddpimvaVNAKVEEWKLILSSKDDEIIEYQQMLHNLRE 336
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQE-------LQEQRIDLKEQIKS-------IEKEIENLNGKKEELEEELEELEAALRDLES 882
|
250 260 270
....*....|....*....|....*....|....*....
gi 2462534476 337 KLKNAQLDAD--KSNVMALQQGIQERDSQIKMLTEQVEQ 373
Cdd:TIGR02169 883 RLGDLKKERDelEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1757-2486 |
1.54e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1757 LVERLKSQLALKEKQQKALSRaLLELRAEMTAAaeERIISATSQKEAHLNVQQiVDRHTRELKTQVEDLNENLLKLKEAL 1836
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAER-YKELKAELREL--ELALLVLRLEELREELEE-LQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1837 KTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQgkpltdNKQSLIEELQRKVKKLE 1916
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE------ELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1917 NQLEGKVEEVDLKPMKEKNAKEELIRWEEG-KKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKD---------------- 1979
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRlEELEEQLETLRSKVAQLELQIASLNNEIERLEArlerledrrerlqqei 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1980 ---LFAKADKEKLTLQRKLKTTGMTVDQVLG-IRALESEKELEELKKRNLDLENDILYMRAHQALPRDSVVEDLHLQNRY 2055
Cdd:TIGR02168 424 eelLKKLEEAELKELQAELEELEEELEELQEeLERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2056 LQEKLHALEKQFSKDTYSKPSQNQISGIESDDHCQREQELQK--ENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEM 2133
Cdd:TIGR02168 504 FSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGrlQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2134 CEFLKKEKAEVQRKLGHVRGSGRSGKTIPELEKTIGLM---KKVVEKVQRENEQLKK----------------ASGILT- 2193
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggVLVVDDLDNALELAKKlrpgyrivtldgdlvrPGGVITg 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2194 -SEKMANIEQENEKLKAELEKLKAHLGHQLsmhyesktkgtEKIIAENERLRKELKKETDAAEKLRIAKNNLEILNEKMT 2272
Cdd:TIGR02168 664 gSAKTNSSILERRREIEELEEKIEELEEKI-----------AELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2273 VQLEETGKRLQFAESRGPQLEGADSKSWKSIVVTRmyetklkeletdiAKKNQSITDLKQLVKEATEREQKVNKYNEDLE 2352
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELE-------------ERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2353 QQIKILKHVpEGAETEqgLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTipDADQLKEKIKDLETQLkmSDLE 2432
Cdd:TIGR02168 800 ALREALDEL-RAELTL--LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE--DIESLAAEIEELEELI--EELE 872
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 2462534476 2433 KQHLKEEIKKLkkelenfdpSFFEEIEDLKYNYKEEVKKNILLEEKVKKLSEQL 2486
Cdd:TIGR02168 873 SELEALLNERA---------SLEEALALLRSELEELSEELRELESKRSELRREL 917
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1657-1877 |
1.70e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1657 MEQTVAEQDDSLSSLLVKLKKVSQDLER-QREITELKVK-------EFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQS 1728
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEaEAALEEFRQKnglvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1729 QKEsqcLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMtAAAEERIISATSQKEAHLNVQ 1808
Cdd:COG3206 246 RAQ---LGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQI-AALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462534476 1809 QivdrhtRELKTQVEDLNENLLKLKEALKTSKNREnsltDNLNDLNNELQKKQKAYNKILREKEEIDQE 1877
Cdd:COG3206 322 L------EALQAREASLQAQLAQLEARLAELPELE----AELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
130-176 |
1.80e-03 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 43.28 E-value: 1.80e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2462534476 130 ELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQL 176
Cdd:PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
734-1612 |
2.90e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 734 AQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRqsegsnvvfkgidlpdgiapssaSIINSQNE 813
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR-----------------------LEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 814 YLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQsllyKEYLSEKETWKTESKTIKEEKRKLEDQVQQDAIKVKEYN 893
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQL----EELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 894 NLLNALQMDSDEMKKILAEnsrkitvlqvneksLIRQYTTLVELERQLRKENEKQKNELLSMEAEvcekigclqrfkema 973
Cdd:TIGR02168 358 AELEELEAELEELESRLEE--------------LEEQLETLRSKVAQLELQIASLNNEIERLEAR--------------- 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 974 ifkIAALQKVVDNSVSLSELELANKQYNELTAKYRDILQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLH 1053
Cdd:TIGR02168 409 ---LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1054 TIEQAWEQ-ETKLGNESSMDKAKKSITN------------SDIVSISKK------------ITMLEMKELNERQRAEHCQ 1108
Cdd:TIGR02168 486 QLQARLDSlERLQENLEGFSEGVKALLKnqsglsgilgvlSELISVDEGyeaaieaalggrLQAVVVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1109 KMYEHLRTSlkqmeernfeletkFAELTKINLDAQKVEQMLRDELADSVSKAVSDadrqrileLEKNEMELKVEVSKLRE 1188
Cdd:TIGR02168 566 KQNELGRVT--------------FLPLDSIKGTEIQGNDREILKNIEGFLGVAKD--------LVKFDPKLRKALSYLLG 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1189 ISDIARRqveILNAQQQSRDKEVESLRMQLLDYQAQSDekSLIAKLHQHNVSLQLSEATALGKLEsitSKLQKMEAYNLR 1268
Cdd:TIGR02168 624 GVLVVDD---LDNALELAKKLRPGYRIVTLDGDLVRPG--GVITGGSAKTNSSILERRREIEELE---EKIEELEEKIAE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1269 LEQKLDEKEQALYyarlEGRNRAKHLRQTIQSLRRQFSGALplaqqekfsktmIQLQNDKLKIMQEMKNSQQEHRNMENK 1348
Cdd:TIGR02168 696 LEKALAELRKELE----ELEEELEQLRKELEELSRQISALR------------KDLARLEAEVEQLEERIAQLSKELTEL 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1349 TLEMELKLKGLEELISTLKDTKGaqkvinwhmKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQqn 1428
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEA---------EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES-- 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1429 kfHEERQMAWDQREVDLERQLDifdrqqneilNAAQKFEEATGSIpdpslplpNQLEIALRKIKENIRIILETRAtckSL 1508
Cdd:TIGR02168 829 --LERRIAATERRLEDLEEQIE----------ELSEDIESLAAEI--------EELEELIEELESELEALLNERA---SL 885
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1509 EEKLKEKESALRLAEQNILSRDKVINELRlrlpatAEREKLIAELGRKEMEpkshhtLKIAHQTIANMQARLNQK----E 1584
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELR------RELEELREKLAQLELR------LEGLEVRIDNLQERLSEEysltL 953
|
890 900
....*....|....*....|....*...
gi 2462534476 1585 EVLKKYQRLLEKAREEQREIVKKHEEDL 1612
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
35-200 |
3.18e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 35 VEVNELKSEkqenVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLR 114
Cdd:COG2433 363 VDRDEVKAR----VIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER------------LE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 115 NEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAenenSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETL 194
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARSEERREIRKDREI----SRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
....*..
gi 2462534476 195 -LSRRGE 200
Cdd:COG2433 503 kLEHSGE 509
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1477-1926 |
3.31e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1477 SLPLPNQLEIALRKIKEN-----IRIILETRATCKSLEEKlkekesalRLAEQNILSRDKVINELrlrlpataerEKLIA 1551
Cdd:PRK10929 21 TAPDEKQITQELEQAKAAktpaqAEIVEALQSALNWLEER--------KGSLERAKQYQQVIDNF----------PKLSA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1552 ELgRKEMEPKSHHTLKI-AHQTIANmqarLNQkeEVLKKYQRLLEKAREEQreivkkHEEDlhilhhRLELQADsSLNKF 1630
Cdd:PRK10929 83 EL-RQQLNNERDEPRSVpPNMSTDA----LEQ--EILQVSSQLLEKSRQAQ------QEQD------RAREISD-SLSQL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1631 KQTAWDLMKQsptpvptnkhfirLAEMEQTVAEQDDSLSSLlvklkKVSQDLERQREITELKVKEFENIKLQLQENHEDE 1710
Cdd:PRK10929 143 PQQQTEARRQ-------------LNEIERRLQTLGTPNTPL-----AQAQLTALQAESAALKALVDELELAQLSANNRQE 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1711 VKKVKAEVEDLKYllDQSQKESQCLKSEL--QAQKEANSRAPTTTM-----RNLVERLKSQLalkeKQQKALSRALLELR 1783
Cdd:PRK10929 205 LARLRSELAKKRS--QQLDAYLQALRNQLnsQRQREAERALESTELlaeqsGDLPKSIVAQF----KINRELSQALNQQA 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1784 AEMTA-AAEERiiSATSQKeahLNVQQIVDRhTRE--------------LKTQVEDLNE---------NLLKLK-EALKT 1838
Cdd:PRK10929 279 QRMDLiASQQR--QAASQT---LQVRQALNT-LREqsqwlgvsnalgeaLRAQVARLPEmpkpqqldtEMAQLRvQRLRY 352
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1839 SK--NRENSLTDNLNDLNNELQKKQkayNKILrekeeidqeNDELKRQIKRLTSGLQGkpltdnKQSLIEELQrKVKKLE 1916
Cdd:PRK10929 353 EDllNKQPQLRQIRQADGQPLTAEQ---NRIL---------DAQLRTQRELLNSLLSG------GDTLILELT-KLKVAN 413
|
490
....*....|
gi 2462534476 1917 NQLEGKVEEV 1926
Cdd:PRK10929 414 SQLEDALKEV 423
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1659-1927 |
3.71e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1659 QTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKefeniklqLQENHEDEVKKV-KAEVEDLKYLLDQSQKESQCLKS 1737
Cdd:PHA02562 163 SVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIK--------TYNKNIEEQRKKnGENIARKQNKYDELVEEAKTIKA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1738 ELqaqkeansraptttmrnlvERLKSQLALKEKQQKALSRALLELRAEMTAAAEERiisATSQKEAHLN---------VQ 1808
Cdd:PHA02562 235 EI-------------------EELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI---EQFQKVIKMYekggvcptcTQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1809 QIVDrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRL 1888
Cdd:PHA02562 293 QISE--GPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370
|
250 260 270
....*....|....*....|....*....|....*....
gi 2462534476 1889 TSGlqgkplTDNKQSLIEELQRKVKKLENQLEGKVEEVD 1927
Cdd:PHA02562 371 QAE------FVDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1787-1987 |
4.07e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1787 TAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNK 1866
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1867 ILREKEEIDQENDELK-----RQIKRLTSGLQG-KPLTDNKQSLIEELQRKVKKLENQ---LEGKVEEVDLKPMKEKNAK 1937
Cdd:COG3883 91 RARALYRSGGSVSYLDvllgsESFSDFLDRLSAlSKIADADADLLEELKADKAELEAKkaeLEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1938 EELirweegkkwQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKE 1987
Cdd:COG3883 171 AEL---------EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1653-1896 |
4.53e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1653 RLAEMEQTVAEQDDSLSSLLVKLKKVSQDL----ERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQS 1728
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELdalqERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1729 QKESQCLKSELQAQKEANSRApTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIiSATSQKEAHLNVQ 1808
Cdd:COG4913 691 EEQLEELEAELEELEEELDEL-KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF-AAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1809 QIVDRHTRELKTQVEDLNENLLKL-KEALKTSKNRENSLTDNLNDL-----------NNELQKKQKAYNKILREKE---- 1872
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAmRAFNREWPAETADLDADLESLpeylalldrleEDGLPEYEERFKELLNENSiefv 848
|
250 260
....*....|....*....|....*....
gi 2462534476 1873 -----EIDQENDELKRQIKRLTSGLQGKP 1896
Cdd:COG4913 849 adllsKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
153-694 |
4.60e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 153 EEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKI 232
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 233 EVQNQEMRK------NLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTDLLKSKNEeddpimvav 306
Cdd:PRK03918 241 EELEKELESlegskrKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE--------- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 307 nakVEEWKLILSSKDDEIIEYQQMLHNLREKLK--NAQLDADKSNVMALQQGIQERDsQIKMLTEQVEQYTKEMEKNTci 384
Cdd:PRK03918 312 ---IEKRLSRLEEEINGIEERIKELEEKEERLEelKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLT-- 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 385 IEDLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTKEAERT-AELAEADA------REKDKELVEALkrLKDYESGVYG 457
Cdd:PRK03918 386 PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAiEELKKAKGkcpvcgRELTEEHRKEL--LEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 458 LEDAVVEIKNCKNQIKIRDREIEILTKEINKL--ELKISDFLDENEALRERVGLEpKTMIDLTEFRNSKHlKQQQYRAEN 535
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKESELikLKELAEQLKELEEKLKKYNLE-ELEKKAEEYEKLKE-KLIKLKGEI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 536 QILLKEIESLEE---ERLDLKKKIRQMAQERG---KRSATSGLTTEDlNLTENISQGDRISERKLDLL-SLKNMSEAQSK 608
Cdd:PRK03918 542 KSLKKELEKLEElkkKLAELEKKLDELEEELAellKELEELGFESVE-ELEERLKELEPFYNEYLELKdAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 609 NEIIAQEFLIKEAECRNADIELEHHRSQAEQ---------NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLE 679
Cdd:PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEElekkyseeeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
570
....*....|....*
gi 2462534476 680 EGMKEILQAIKEMQK 694
Cdd:PRK03918 701 EELEEREKAKKELEK 715
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-394 |
4.83e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 149 ALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNyeliqylDEIQTLTEA 228
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE-------AELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 229 NEKIEVQNQEMRKNLEESVQEMEKMtDEYNRMKAIVHQTDnvidqlkkendhyQLQVQELTDLLKSKNEEDDPIMVAVNA 308
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRL-GRQPPLALLLSPED-------------FLDAVRRLQYLKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 309 KVEEwkliLSSKDDEIIEYQQMLHNLREKLKNAQLdadksnvmALQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDL 388
Cdd:COG4942 158 DLAE----LAALRAELEAERAELEALLAELEEERA--------ALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
....*.
gi 2462534476 389 KNELQR 394
Cdd:COG4942 226 EALIAR 231
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1033-1600 |
4.93e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1033 SLKEQVE------SINKELEITK--EKLHTIEQAWEQETKLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRA 1104
Cdd:COG1196 204 PLERQAEkaeryrELKEELKELEaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1105 EHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELADsvskavsdaDRQRILELEKNEMELKVEVS 1184
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE---------LEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1185 KLRE-ISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKME 1263
Cdd:COG1196 355 EAEAeLAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1264 AYNLRLEQKLDE-KEqalyyARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEmknsQQEH 1342
Cdd:COG1196 435 EEEEEEEEALEEaAE-----EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA----DYEG 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1343 RNMENKTLEMELKLKGLEELISTL------------------------KDTKGAQKVINWHMKIEELRLQELKLNRElvk 1398
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLigveaayeaaleaalaaalqnivvEDDEVAAAAIEYLKAAKAGRATFLPLDKI--- 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1399 DKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSl 1478
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS- 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1479 plpnqleIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAEREKLIAELGRKEM 1558
Cdd:COG1196 662 -------LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2462534476 1559 EPKSHHTLKIAHQTIANMQARL--NQKEEVLKKYQRLLEKAREE 1600
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELpePPDLEELERELERLEREIEA 778
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1869-2010 |
4.99e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1869 REKEEIDQENDELKRQIKRLtsglqgkpltdnkQSLIEELQRKVKKLENQLEGKVEEVD-----LKPMKeKNAKEELIRW 1943
Cdd:COG2433 399 REKEHEERELTEEEEEIRRL-------------EEQVERLEAEVEELEAELEEKDERIErlereLSEAR-SEERREIRKD 464
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534476 1944 EEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEKLTLQRKL----KTTGMTVDQVLGIRA 2010
Cdd:COG2433 465 REISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGELVPVKVVekftKEAIRRLEEEYGLKE 535
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
153-765 |
5.64e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 153 EEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRgedsdyrsqlskknyeliqylDEIQTLTEAneki 232
Cdd:pfam10174 112 ELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARD---------------------ESIKKLLEM---- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 233 eVQNQEMRKNLEESVQEMEKMTDEYnrmKAIVHQTDNVIDQLKKENDHyqlqvqeLTDLLKSKNEeddpiMVAVNAKVEE 312
Cdd:pfam10174 167 -LQSKGLPKKSGEEDWERTRRIAEA---EMQLGHLEVLLDQKEKENIH-------LREELHRRNQ-----LQPDPAKTKA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 313 WKLILSSKDDEIIEYQQMLHNLREklknaQLDADKSNVMAlqqGIQERDSQIKMLtEQVEQYTKEMEKNtciIEDLKNEL 392
Cdd:pfam10174 231 LQTVIEMKDTKISSLERNIRDLED-----EVQMLKTNGLL---HTEDREEEIKQM-EVYKSHSKFMKNK---IDQLKQEL 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 393 QRnKGASTLSQQTHMKIQST--------LDILKEKTKEAERTAEL--AEADA-----REKDKELVEALKRLKDYESGVYG 457
Cdd:pfam10174 299 SK-KESELLALQTKLETLTNqnsdckqhIEVLKESLTAKEQRAAIlqTEVDAlrlrlEEKESFLNKKTKQLQDLTEEKST 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 458 LEDavvEIKNCKNQIKIRDREIEILTKEINKLELKISDFLDENEALRERVglepktmidltefrnsKHLKQQQYRAENQI 537
Cdd:pfam10174 378 LAG---EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERV----------------KSLQTDSSNTDTAL 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 538 LLKEIESLEEERL--DLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDrISERKLDLLSLKNMSEAQskneiiAQE 615
Cdd:pfam10174 439 TTLEEALSEKERIieRLKEQREREDRERLEELESLKKENKDLKEKVSALQPE-LTEKESSLIDLKEHASSL------ASS 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 616 FLIKEAECRNADIELEHHRS-------------QAEQNEFLSRELIEKERDLE----RSRTVIAKFQNKLKELVEENKQL 678
Cdd:pfam10174 512 GLKKDSKLKSLEIAVEQKKEecsklenqlkkahNAEEAVRTNPEINDRIRLLEqevaRYKEESGKAQAEVERLLGILREV 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 679 EEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDASL--------HLKAQVDQLTGRNEELRQEL 750
Cdd:pfam10174 592 ENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRrednladnSQQLQLEELMGALEKTRQEL 671
|
650
....*....|....*
gi 2462534476 751 RESRKEAINYSQQLA 765
Cdd:pfam10174 672 DATKARLSSTQQSLA 686
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1661-2426 |
6.18e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1661 VAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFEniKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKEsqclksELQ 1740
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE--RLRREREKAERYQALLKEKREYEGYELLKEKE------ALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1741 AQKEAnSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKT 1820
Cdd:TIGR02169 237 RQKEA-IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1821 QVEDLNENLLKLKEALKTSKNRENSLTDNLND-------LNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQ 1893
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkrrdkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1894 G-----KPLTDNKQSLIEELQRKVKKLENqLEGKVEEVDLKPMKEKNAKEELIrwEEGKKWQAKIEGIRNKLKEKEGEVF 1968
Cdd:TIGR02169 396 KlkreiNELKRELDRLQEELQRLSEELAD-LNAAIAGIEAKINELEEEKEDKA--LEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1969 TLTKQLNTLKDLFAKADKEkltLQRKLKTTGMTVDQVLGIRALESEKELEEL--------------------------KK 2022
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRE---LAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgsvgeryataievaagnRL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2023 RNLDLEND------ILYMRAHQA-----LPRDSVvEDLHLQNRYLQEK--------LHALEKQFSKDTYSKpsqNQISGI 2083
Cdd:TIGR02169 550 NNVVVEDDavakeaIELLKRRKAgratfLPLNKM-RDERRDLSILSEDgvigfavdLVEFDPKYEPAFKYV---FGDTLV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2084 ESDDHCQREQELQKENLKLSSENIE---------------LKFQLEQANKdLPRLKNQVRDLKEMCEFLKKEKAEVQRKL 2148
Cdd:TIGR02169 626 VEDIEAARRLMGKYRMVTLEGELFEksgamtggsraprggILFSRSEPAE-LQRLRERLEGLKRELSSLQSELRRIENRL 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2149 GHVRGS-GRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANI-------------EQENEKLKAELEKL 2214
Cdd:TIGR02169 705 DELSQElSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkelearieelEEDLHKLEEALNDL 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2215 KAHLGHQLSMHYESKTKGTEKIIAENER----LRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRGP 2290
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEArlreIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2291 QLEgadskswksivvtrmyeTKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKILKHVPEgaeteqG 2370
Cdd:TIGR02169 865 ELE-----------------EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS------E 921
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534476 2371 LKRELQVLRLANHQLDKEKAELIHQIEAnkdqsgaestIPDADQLKEKIKDLETQL 2426
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEE----------ELSLEDVQAELQRVEEEI 967
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1584-2139 |
6.68e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1584 EEVLKKYQRLLEKAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQTAWDLMK-QSPTPVPTNKHFIRLAEMEQTVA 1662
Cdd:TIGR00618 303 TQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRdAHEVATSIREISCQQHTLTQHIH 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1663 EQDDSLSSLLVKLKKVSQDLERQREitelkvkEFENIKLQLQENHEDEVKKVKAEVE---DLKYLLDQSQKESQCLKSEL 1739
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQR-------EQATIDTRTSAFRDLQGQLAHAKKQqelQQRYAELCAAAITCTAQCEK 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1740 QAQKEANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLN-------VQQIVD 1812
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNpgpltrrMQRGEQ 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1813 RHtRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGL 1892
Cdd:TIGR00618 536 TY-AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQ 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1893 QGKPL----TDNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGKKW---QAKIEGIRNKLKEKEG 1965
Cdd:TIGR00618 615 HALLRklqpEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLasrQLALQKMQSEKEQLTY 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1966 EVFTLTKQLNTLKDL---FAKADKEKLTLQRKLKTTGMTVDQVLGIRALESEKELEELKKRNLDLENDilYMRAHQALPR 2042
Cdd:TIGR00618 695 WKEMLAQCQTLLRELethIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEA--HFNNNEEVTA 772
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2043 D--------SVVEDLHLQNRYLQEKLHALEKQFSKDTYSKPSQNQISGIESDDHCQREQELQKENLKLSSENIELKFQLE 2114
Cdd:TIGR00618 773 AlqtgaelsHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLL 852
|
570 580
....*....|....*....|....*
gi 2462534476 2115 QANKDLPRLKNQVRDLKEMCEFLKK 2139
Cdd:TIGR00618 853 KYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
635-900 |
7.00e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 635 SQAEQNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEilqaikemqkdpdvkggetsliipsLERLV 714
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-------------------------LARRI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 715 NAIESKNAEgifdaslhLKAQVDQLTGRNEELRQELRESRKEainYSQQLAKAnLKIDHLEKETSLLRQSEGSNVVfkgi 794
Cdd:COG4942 72 RALEQELAA--------LEAELAELEKEIAELRAELEAQKEE---LAELLRAL-YRLGRQPPLALLLSPEDFLDAV---- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 795 dlpdgiapSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTESKTIKEE 874
Cdd:COG4942 136 --------RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE 207
|
250 260
....*....|....*....|....*.
gi 2462534476 875 KRKLEDQVQQDAIKVKEYNNLLNALQ 900
Cdd:COG4942 208 LAELAAELAELQQEAEELEALIARLE 233
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1815-2443 |
7.14e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1815 TRELKTQVEDLN------ENLLKLKEALKTSKNRENSLtdNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRL 1888
Cdd:COG1196 195 LGELERQLEPLErqaekaERYRELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1889 TSGLQgkpltdNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWE-EGKKWQAKIEGIRNKLKEKEGEV 1967
Cdd:COG1196 273 RLELE------ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEeELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1968 FTLTKQLNTLKDLFAKADKEKLTLQRKLkttgmtvdqvlgiraLESEKELEELKKRNLDLENDILYMRAHQALPRDSVVE 2047
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAEL---------------AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2048 DLHLQNRYLQEKLHALEKQfskdtyskpsqnQISGIESDDHCQREQELQKENLKLSSENIELKFQLEQANKDLPRLKNQV 2127
Cdd:COG1196 412 LLERLERLEEELEELEEAL------------AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2128 RDLKEMCEFLKKEKAEVQRKLGHVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQENEKL 2207
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2208 KAELEKLKAHLGHQlsmhyesktkgtekiiAENERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQfAES 2287
Cdd:COG1196 560 AAAIEYLKAAKAGR----------------ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG-DTL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2288 RGPQLEGADSKSWKSIVVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKyNEDLEQQIKILKHVPEGAET 2367
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL-EELAERLAEEELELEEALLA 701
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534476 2368 EQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTIPDADQLKEKIKDLETQLKMSDLEKQhlkeeIKKL 2443
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE-----LERL 772
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1735-2500 |
7.20e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1735 LKSELQAQKEANSRAPTTTMRNLVERLKSQLALK-EKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDR 1813
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKlNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1814 HTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQ 1893
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1894 GKPLTDNKQSLIEELQRKVKKLENQLEGKVEEVDLKPM----KEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKEGEVFT 1969
Cdd:pfam02463 360 ELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELelksEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESI 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1970 LTKQ----LNTLKDLFAKADKEKLTLQRKLKTTGMTVDQVLGIRALESEKELEELKKRNLDLENDILYMRAHQALPRDSV 2045
Cdd:pfam02463 440 ELKQgkltEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDG 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2046 VEDLHLQNRYLQEKLH-ALEKQFSKDTYSKPSQNQISGIESDDHCQREQELQKENLKLSSENIELKFQLEQANKDLP--- 2121
Cdd:pfam02463 520 VGGRIISAHGRLGDLGvAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVlei 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2122 ------RLKNQVRDLKEMCEFLKKEKAEVQRKLGHVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSE 2195
Cdd:pfam02463 600 dpilnlAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2196 KMANIEQENEKLKAELEKLKAHLGHQLSMHYESKTKGTEKIIAENERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQL 2275
Cdd:pfam02463 680 ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKK 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2276 EETGKRLQFAESRGPQLEGADSKSWKSIVVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQI 2355
Cdd:pfam02463 760 EEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELA 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 2356 KILKHVPEGAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTipDADQLKEKIKDLETQLKMSDLEKQH 2435
Cdd:pfam02463 840 LELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE--EKEKEEKKELEEESQKLNLLEEKEN 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534476 2436 LKEEIKKLKKELENFDPSFFEEIEDLKYNYKEEVKKNILLEEKVKKLSEQLGVELTSPVA-ASEEF 2500
Cdd:pfam02463 918 EIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLmAIEEF 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1324-1731 |
8.09e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 8.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1324 LQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDtkgaqkvinwhmKIEELRLQELKLNRELVKDKEEI 1403
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE------------RLEELEEDLSSLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1404 KYLNNIISEYERTISSLEEEIvqqnkfheerqmawdqreVDLERQLDifDRQQNEILNAAQKFEEATGSIpdpslplpnq 1483
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEAL------------------NDLEARLS--HSRIPEIQAELSKLEEEVSRI---------- 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1484 leialRKIKENIRIILETRATCK-SLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAERekliaelgrkemepks 1562
Cdd:TIGR02169 811 -----EARLREIEQKLNRLTLEKeYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE---------------- 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1563 hhtlkiahqtIANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEdlhilhhrlelqADSSLNKFKQTAWDLMKQSP 1642
Cdd:TIGR02169 870 ----------LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE------------LEAQIEKKRKRLSELKAKLE 927
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1643 TPVPTNKHFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQEnHEDEVKKVKAEVEDLK 1722
Cdd:TIGR02169 928 ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDE-LKEKRAKLEEERKAIL 1006
|
....*....
gi 2462534476 1723 YLLDQSQKE 1731
Cdd:TIGR02169 1007 ERIEEYEKK 1015
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1813-1964 |
8.24e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 8.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1813 RHTRELKTQVEDLNENLLKLKEALKtskNRENSLtdnlndlnneLQKKQKAYNKILRE-KEEIDQENDELKRQIKRLTSG 1891
Cdd:PRK00409 537 EEAEALLKEAEKLKEELEEKKEKLQ---EEEDKL----------LEEAEKEAQQAIKEaKKEADEIIKELRQLQKGGYAS 603
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534476 1892 LQGKPLTDNKQSLIEELQRKVKKL----ENQLEGKV-EEVDLKPMkekNAKEELIRWEEGKKWQAKIEGIRNKLKEKE 1964
Cdd:PRK00409 604 VKAHELIEARKRLNKANEKKEKKKkkqkEKQEELKVgDEVKYLSL---GQKGEVLSIPDDKEAIVQAGIMKMKVPLSD 678
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
905-1433 |
8.38e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 8.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 905 EMKKILAENSRKITVLQVNEKSLIRQYTTLVELERQLRK------ENEKQKNELLSMEAEVCEKIGCLQRFKEMAIFKIA 978
Cdd:PRK03918 197 EKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeeieELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 979 ALQKVVDNsvsLSELELANKQYNELTAKYRDILQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQA 1058
Cdd:PRK03918 277 ELEEKVKE---LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1059 WEQETKLGNESSMDKAKKsitnSDIVSISKKITMLEMKELNE-----RQRAEHCQKMYEHLRTSLKQMEERNFELETKFA 1133
Cdd:PRK03918 354 LEELEERHELYEEAKAKK----EELERLKKRLTGLTPEKLEKeleelEKAKEEIEEEISKITARIGELKKEIKELKKAIE 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1134 ELTKIN----LDAQKVEQMLRDELADSVSKAVSDAdRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSRDK 1209
Cdd:PRK03918 430 ELKKAKgkcpVCGRELTEEHRKELLEEYTAELKRI-EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1210 EVESLRMQLLDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALyyaRLEGRN 1289
Cdd:PRK03918 509 EEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL---EELGFE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1290 RAKHLRQTIQSLrrqfsgalplaqqEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDT 1369
Cdd:PRK03918 586 SVEELEERLKEL-------------EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462534476 1370 kgaqKVINWHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEE 1433
Cdd:PRK03918 653 ----EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1127-1223 |
9.17e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 9.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1127 ELETKFAELT-KINLDAQKVEQmLRDELAD-SVSKAVSDADRQRIL-----------ELEKNEMELKVEVSKLREISDIA 1193
Cdd:PRK09039 57 RLNSQIAELAdLLSLERQGNQD-LQDSVANlRASLSAAEAERSRLQallaelagagaAAEGRAGELAQELDSEKQVSARA 135
|
90 100 110
....*....|....*....|....*....|
gi 2462534476 1194 RRQVEILNAQqqsrdkeVESLRMQLLDYQA 1223
Cdd:PRK09039 136 LAQVELLNQQ-------IAALRRQLAALEA 158
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1762-1925 |
9.59e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 9.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1762 KSQLALKEKQQKALSRALLELRAEMTAAAEERIiSATSQKEAHLNVQQI---------VDRHTRELKTQVEDLNENLLKL 1832
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-ALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534476 1833 KEalktsknrensLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQGKP---------------- 1896
Cdd:COG4913 688 AA-----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEdlarlelralleerfa 756
|
170 180 190
....*....|....*....|....*....|....*....
gi 2462534476 1897 ----------LTDNKQSLIEELQRKVKKLENQLEGKVEE 1925
Cdd:COG4913 757 aalgdavereLRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| |
