|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
223-475 |
1.79e-38 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 143.33 E-value: 1.79e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 223 YNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTR---DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEK 299
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRrrgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 300 KEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAI 379
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 380 KLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELrLA 458
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDyLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LA 250
|
250
....*....|....*..
gi 2462534732 459 LAQVLAVMGQTKEAEKM 475
Cdd:COG2956 251 LADLLERKEGLEAALAL 267
|
|
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
27-101 |
4.88e-37 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 132.27 E-value: 4.88e-37
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534732 27 GGSMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPVTLCYDWQVGSIPLVETIWDMRNLATIFLAVVMA 101
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
207-449 |
1.78e-35 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 134.86 E-value: 1.78e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 207 LFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQH 283
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDylkAGLLDRAEELLEKLLELDPDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 284 NRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLV 363
Cdd:COG2956 110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 364 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQ 443
Cdd:COG2956 190 EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269
|
....*.
gi 2462534732 444 EAAALQ 449
Cdd:COG2956 270 RQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
246-483 |
2.83e-35 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 133.21 E-value: 2.83e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 246 LKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYS 322
Cdd:COG0457 1 LELDPDDAEAYNNLGLAyrrLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 323 SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGEN 402
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 403 SMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSE 482
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
.
gi 2462534732 483 E 483
Cdd:COG0457 241 Y 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
262-515 |
4.58e-34 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 131.00 E-value: 4.58e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 262 LTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIY 341
Cdd:COG2956 20 LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 342 QTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAE 420
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDpDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 421 ILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVsEETGCLECYRLLSAIYSKQ 500
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-ELDPSDDLLLALADLLERK 258
|
250
....*....|....*
gi 2462534732 501 ENHDKALDAIDKALQ 515
Cdd:COG2956 259 EGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
288-546 |
7.49e-34 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 130.23 E-value: 7.49e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 288 FNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGL 367
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 368 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAA 446
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 447 ALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVI-- 524
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLal 251
|
250 260
....*....|....*....|..
gi 2462534732 525 SELFFTKGNQLREQNLLDKAFE 546
Cdd:COG2956 252 ADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
216-448 |
1.77e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 128.20 E-value: 1.77e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 216 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGN 292
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAylrLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 293 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 372
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534732 373 AHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAAL 448
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
359-614 |
2.15e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 129.08 E-value: 2.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 359 GVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEE 437
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDpDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 438 ALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLK 517
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 518 PKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLkE 597
Cdd:COG2956 175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249
|
250
....*....|....*..
gi 2462534732 598 NLAKLDRLEKRLQEVRE 614
Cdd:COG2956 250 ALADLLERKEGLEAALA 266
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
237-461 |
1.04e-32 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 133.58 E-value: 1.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 237 EAIYHYRTALKLYPRHASALNNLGtltrDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPE 316
Cdd:COG3914 69 AAAAALLLLAALLELAALLLQALG----RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 317 FADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLY 396
Cdd:COG3914 145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534732 397 RSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQ 461
Cdd:COG3914 225 RQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPP 289
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
205-611 |
4.02e-30 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 126.35 E-value: 4.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 205 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 281
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAylaLGDFEKAAEYLAKATELDP 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 282 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 361
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 362 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA--HKAEILSpLGALYYNTGRYEEAL 439
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpkNLRAILA-LAGLYLRTGNEEEAV 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 440 QIYQEAAALQPSQRELRLALAQVLAVMGQTKeaekmtnhivseetgclecyrllsaiyskqenhdKALDAIDKALQLKPK 519
Cdd:TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLK----------------------------------KALAILNEAADAAPD 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 520 DPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENL 599
Cdd:TIGR02917 600 SP----EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675
|
410
....*....|..
gi 2462534732 600 AKLDRLEKRLQE 611
Cdd:TIGR02917 676 AQLLLAAKRTES 687
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
215-455 |
1.78e-28 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 120.87 E-value: 1.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 215 LPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHPQHNRALFNLG 291
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAallALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 292 NLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKA 371
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 372 VAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQP 450
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDpDNADAHSNLLFALRQACDWEVYDRFEELLAALAR 245
|
....*
gi 2462534732 451 SQREL 455
Cdd:COG3914 246 GPSEL 250
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
216-617 |
6.69e-28 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 119.42 E-value: 6.69e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 216 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHPQHNRALFNLGN 292
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEgnpDDAIQRFEKVLTIDPKNLRAILALAG 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 293 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 372
Cdd:TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 373 AHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV-AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPS 451
Cdd:TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELkPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 452 QRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLlSAIYSKQENHDKALDAIDKALQLKPKDPKVISELfftk 531
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL---- 776
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 532 GNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHiKGKYVSARAYYERALQLVPDskllkeNLAKLDRLEKRLQE 611
Cdd:TIGR02917 777 AELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL-ELKDPRALEYAERALKLAPN------IPAILDTLGWLLVE 849
|
....*.
gi 2462534732 612 VREKDQ 617
Cdd:TIGR02917 850 KGEADR 855
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
205-414 |
1.23e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 106.74 E-value: 1.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 205 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 281
Cdd:COG2956 62 IRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIyeqEGDWEKAIEVLERLLKLGP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 282 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 361
Cdd:COG2956 142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462534732 362 LVDTGLPEKAVAHYQQAIKLSPSHHVAMvNLGRLYRSLGENSMAEEWYKRALQ 414
Cdd:COG2956 222 YEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
349-588 |
1.42e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 105.86 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 349 PDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGA 427
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 428 LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKAL 507
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 508 DAIDKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQ 587
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
.
gi 2462534732 588 L 588
Cdd:COG0457 245 A 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
205-342 |
1.20e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.16 E-value: 1.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 205 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 281
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAlqaLGRYEEALEDYDKALELDP 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534732 282 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQ 342
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
379-617 |
3.29e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.01 E-value: 3.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 379 IKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQPsqrelrl 457
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDpDDAEALYNLGLAYLRLGRYEEALADYEQALELDP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 458 alaqvlavmgqtkeaekmtnhivseetGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLRE 537
Cdd:COG0457 74 ---------------------------DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA----EALYNLGLALLE 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 538 QNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVREKDQ 617
Cdd:COG0457 123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
364-565 |
1.92e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 101.99 E-value: 1.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 364 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGAL----------YYNTG 433
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaallelaallLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 434 RYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKA 513
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 514 LQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNM 565
Cdd:COG3914 173 LELDPDNAEALNNL----GNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
232-474 |
3.94e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 101.31 E-value: 3.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 232 QGRNKEAIYHYRTALKLYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLK 308
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLAdayAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 309 DSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFL------------------------VD 364
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLasgntaeavktleawlkthpndavLR 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 365 TGLPE---------KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLgENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGR 434
Cdd:TIGR02917 774 TALAElylaqkdydKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLApNIPAILDTLGWLLVEKGE 852
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2462534732 435 YEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 474
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
264-609 |
1.07e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 100.16 E-value: 1.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 264 RDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQT 343
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 344 GIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILS 423
Cdd:TIGR02917 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 424 PL-GALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQEN 502
Cdd:TIGR02917 299 LLaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 503 HDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQnlldKAFESYRVAVQLN--------------------------- 555
Cdd:TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS----EAIADLETAAQLDpelgradlllilsylrsgqfdkalaaa 454
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534732 556 -------PDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRL 609
Cdd:TIGR02917 455 kklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
282-414 |
1.28e-21 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 91.02 E-value: 1.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 282 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 361
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462534732 362 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 414
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
405-591 |
2.05e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 98.53 E-value: 2.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 405 AEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEET 484
Cdd:COG3914 30 AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 485 GCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMN 564
Cdd:COG3914 110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFA----EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN 185
|
170 180
....*....|....*....|....*..
gi 2462534732 565 MGGIQHIKGKYVSARAYYERALQLVPD 591
Cdd:COG3914 186 LGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
219-351 |
1.15e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 88.33 E-value: 1.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 219 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLK 295
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIllqLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534732 296 SQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDS 351
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
301-464 |
1.91e-20 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 90.47 E-value: 1.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 301 EEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIK 380
Cdd:TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 381 LSPSHHVAMV--NLGRLYRSLGENSMAEEWYKRALQV-AHKAEILSPLGALYYNTGRYEEA---LQIYQEAAALQPSQRE 454
Cdd:TIGR02521 128 DPLYPQPARSleNAGLCALKAGDFDKAEKYLTRALQIdPQRPESLLELAELYYLRGQYKDArayLERYQQTYNQTAESLW 207
|
170
....*....|
gi 2462534732 455 LRLALAQVLA 464
Cdd:TIGR02521 208 LGIRIARALG 217
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
250-530 |
1.09e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.13 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 250 PRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGpEFADAYSSLASLLA 329
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAG-EAAAAAAALLLLAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 330 EQERFKEAeeiyqtgikncpdssdlhnnygvfLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGensmaeewy 409
Cdd:COG3914 80 LLELAALL------------------------LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG--------- 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 410 kralqvahkaeilsplgalyyntgRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEC 489
Cdd:COG3914 127 ------------------------RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA 182
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2462534732 490 YRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELFFT 530
Cdd:COG3914 183 LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
265-385 |
2.32e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.86 E-value: 2.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 265 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 344
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2462534732 345 IKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH 385
Cdd:COG4783 99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
208-559 |
1.51e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 90.14 E-value: 1.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 208 FRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGT---LTRDTAEAKMYYQRALQLHPQHN 284
Cdd:TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQyylGKGQLKKALAILNEAADAAPDSP 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 285 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVD 364
Cdd:TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 365 TGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQE 444
Cdd:TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 445 AAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENhDKALDAIDKALQLKPKDPKVI 524
Cdd:TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAIL 840
|
330 340 350
....*....|....*....|....*....|....*
gi 2462534732 525 SelffTKGNQLREQNLLDKAFESYRVAVQLNPDQA 559
Cdd:TIGR02917 841 D----TLGWLLVEKGEADRALPLLRKAVNIAPEAA 871
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
405-614 |
4.97e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 88.13 E-value: 4.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 405 AEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEET 484
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 485 GCLECYRLLsaiysKQENHDKALDAIDKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMN 564
Cdd:COG3914 81 LELAALLLQ-----ALGRYEEALALYRRALALNPDNAEALFNL----GNLLLALGRLEEALAALRRALALNPDFAEAYLN 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462534732 565 MGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 614
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIA 201
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
353-474 |
5.35e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 80.62 E-value: 5.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 353 DLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYN 431
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLK 84
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2462534732 432 TGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 474
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
388-520 |
7.15e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 80.62 E-value: 7.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 388 AMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVM 466
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDpDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2462534732 467 GQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 520
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
451-592 |
4.25e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 78.31 E-value: 4.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 451 SQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFT 530
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP----EARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 531 KGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDS 592
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
490-602 |
1.24e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.58 E-value: 1.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 490 YRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQ 569
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL----AEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462534732 570 HIKGKYVSARAYYERALQLVPDS---KLLKENLAKL 602
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
208-330 |
1.87e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.20 E-value: 1.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 208 FRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHN 284
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAllaAGDTEEAEELLERALALDPDNP 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462534732 285 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYsSLASLLAE 330
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAE 130
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
370-474 |
3.24e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.43 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 370 KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAAL 448
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*.
gi 2462534732 449 QPSQRELRLALAQVLAVMGQTKEAEK 474
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
237-353 |
5.74e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 5.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 237 EAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKY 313
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAylrLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2462534732 314 GPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSD 353
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
336-462 |
7.60e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.27 E-value: 7.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 336 EAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV 415
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462534732 416 AHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQV 462
Cdd:COG4235 81 DPDnPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
416-558 |
1.43e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 73.69 E-value: 1.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 416 AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSA 495
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534732 496 IYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQ 558
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHP----EAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
268-383 |
1.67e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 73.50 E-value: 1.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 268 EAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKN 347
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462534732 348 CPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSP 383
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
212-380 |
2.52e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 75.34 E-value: 2.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 212 VQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNRALF 288
Cdd:COG4785 66 ALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGlayLLLGDYDAALEDFDRALELDPDYAYAYL 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 289 NLGNLLKSQEKKEEAITLLKDSIKYGPEfaDAYSSLASLLAEQE-RFKEAEEiyqtgikncpdssDLHNNYGVFLVDTGL 367
Cdd:COG4785 146 NRGIALYYLGRYELAIADLEKALELDPN--DPERALWLYLAERKlDPEKALA-------------LLLEDWATAYLLQGD 210
|
170
....*....|...
gi 2462534732 368 PEKAVAHYQQAIK 380
Cdd:COG4785 211 TEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
302-416 |
2.81e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 72.73 E-value: 2.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 302 EAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKL 381
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 2462534732 382 SPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA 416
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
425-521 |
3.69e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 72.35 E-value: 3.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 425 LGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHD 504
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
90
....*....|....*..
gi 2462534732 505 KALDAIDKALQLKPKDP 521
Cdd:COG4235 103 EAIAAWQKLLALLPADA 119
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
238-447 |
3.83e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.95 E-value: 3.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 238 AIYHYRTALKLYPRHASALNNLGTLTRDTAEAKMYYQRAL--QLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGP 315
Cdd:COG4785 25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDraLALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 316 EFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRL 395
Cdd:COG4785 105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 396 YRSLGENsmaeewykralqvAHKAEILSPLGALYYNTGRYEEALQIYQEAAA 447
Cdd:COG4785 185 ERKLDPE-------------KALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
205-334 |
6.02e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 78.11 E-value: 6.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 205 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHP 281
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrlEEAIAAYRRALELDP 211
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 282 QHNRALFNLGNLLKSQ------EKKEEAITLLKDSIKYGPEFADAYS---SLASLLAEQERF 334
Cdd:COG3914 212 DNADAHSNLLFALRQAcdwevyDRFEELLAALARGPSELSPFALLYLpddDPAELLALARAW 273
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
205-317 |
6.20e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.15 E-value: 6.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 205 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 281
Cdd:COG4783 24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAllkAGDYDEALALLEKALKLDP 103
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462534732 282 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEF 317
Cdd:COG4783 104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
368-591 |
8.58e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.82 E-value: 8.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 368 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV-------------------------------- 415
Cdd:TIGR02917 38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLgypknqvlpllarayllqgkfqqvldelpgkt 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 416 ----AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYR 491
Cdd:TIGR02917 118 llddEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 492 LLSAIYSKQENHDKALDAIDKALQLKPKDPKViseLFFtKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHI 571
Cdd:TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNIAV---LLA-LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQ 273
|
250 260
....*....|....*....|
gi 2462534732 572 KGKYVSARAYYERALQLVPD 591
Cdd:TIGR02917 274 KKNYEDARETLQDALKSAPE 293
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
265-350 |
1.91e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 69.04 E-value: 1.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 265 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKdSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 344
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 2462534732 345 IKNCPD 350
Cdd:COG3063 86 LELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
484-614 |
2.62e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 2.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 484 TGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWM 563
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462534732 564 NMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 614
Cdd:COG4783 77 NLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
327-419 |
3.56e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 68.27 E-value: 3.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 327 LLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAhYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAE 406
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|...
gi 2462534732 407 EWYKRALQVAHKA 419
Cdd:COG3063 80 AYLERALELDPSA 92
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
231-592 |
3.94e-14 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 75.89 E-value: 3.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 231 DQGRNKEAIYHYRTALKLYPRHASALNNLG-TLTR--DTAEAKMYYQRALQLHPQHnralFNLG---NLLKSQekkeeai 304
Cdd:PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGqAYSQqgDRARAVAQFEKALALDPHS----SNRDkweSLLKVN------- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 305 tllkdsiKYGPEFADAYSSLasllaEQERFKEAEEIYQTGIKNCPDSSdlhnnYGVF-LVDTGLPEK----AVAHYQQAI 379
Cdd:PRK11447 350 -------RYWLLIQQGDAAL-----KANNLAQAERLYQQARQVDNTDS-----YAVLgLGDVAMARKdyaaAERYYQQAL 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 380 KLSPSHHVAMVNLGRLYR------------SLG---ENSMAEewYKRALQVAhkaeILSPLGALYYNTGRYEEALQIYQE 444
Cdd:PRK11447 413 RMDPGNTNAVRGLANLYRqqspekalafiaSLSasqRRSIDD--IERSLQND----RLAQQAEALENQGKWAQAAELQRQ 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 445 AAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEcYRLLSAIYSKQENHDKALDAIDKALQ-------LK 517
Cdd:PRK11447 487 RLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE-QVYAYGLYLSGSDRDRAALAHLNTLPraqwnsnIQ 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 518 PKDPKVISELFFTKGNQLREQ-------NLLDKAFESYRVAVQLnPDQAQAwmnmggiqhiKGKYVSARAYYERALQLVP 590
Cdd:PRK11447 566 ELAQRLQSDQVLETANRLRDSgkeaeaeALLRQQPPSTRIDLTL-ADWAQQ----------RGDYAAARAAYQRVLTREP 634
|
..
gi 2462534732 591 DS 592
Cdd:PRK11447 635 GN 636
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
362-454 |
1.21e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 66.73 E-value: 1.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 362 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEwYKRALQVA-HKAEILSPLGALYYNTGRYEEALQ 440
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDpNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 2462534732 441 IYQEAAALQPSQRE 454
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
265-414 |
1.37e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 68.83 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 265 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 344
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 345 IKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 414
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
231-316 |
3.65e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 65.58 E-value: 3.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 231 DQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMyYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLL 307
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLlleQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 2462534732 308 KDSIKYGPE 316
Cdd:COG3063 83 ERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
496-591 |
4.48e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 65.19 E-value: 4.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 496 IYSKQENHDKALDAIDKALQLKPKDPKVISELfftkGNQLREQNLLDKAfESYRVAVQLNPDQAQAWMNMGGIQHIKGKY 575
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL----GLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDY 75
|
90
....*....|....*.
gi 2462534732 576 VSARAYYERALQLVPD 591
Cdd:COG3063 76 DEALAYLERALELDPS 91
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
216-474 |
2.36e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 70.01 E-value: 2.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 216 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPR-------HASALNNLGtltrDTAEAKMYYQRALQLHPQHNRALF 288
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRvtqsyikRASMNLELG----DPDKAEEDFDKALKLNSEDPDIYY 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 289 NLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLP 368
Cdd:TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 369 EKAVAHYQQAIKLSPSHHVAMVNLGRLyrsLGENSMAEEW---YKRALQVAHKAEILSP--------LGALYYNTGRYEE 437
Cdd:TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPL---INKALALFQWkqdFIEAENLCEKALIIDPecdiavatMAQLLLQQGDVDE 560
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462534732 438 ALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 474
Cdd:TIGR00990 561 ALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
226-450 |
8.53e-12 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 66.47 E-value: 8.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 226 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDTAEakmyYQRALQL----------HPQHNRALFNLG--NL 293
Cdd:COG3071 92 AELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD----WEELLELlpalrkhkalSAEEAQALERRAylGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 294 LKSQEKKEEAITL----LKDSIKYGPEFADAYsslASLLAEQERFKEAEEIYQTGIKNCPDSsDLHNNYGvfLVDTGLPE 369
Cdd:COG3071 168 LRQAARDAEALKAlwkaLPRAERRDPELAAAY---ARALIALGDHDEAERLLREALKRQWDP-RLVRLYG--RLQGGDPA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 370 KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQ 449
Cdd:COG3071 242 KQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALA 321
|
.
gi 2462534732 450 P 450
Cdd:COG3071 322 L 322
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
219-349 |
1.05e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.44 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 219 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQE 298
Cdd:COG5010 23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462534732 299 KKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCP 349
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
323-527 |
1.96e-11 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 65.34 E-value: 1.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 323 SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH-HVAMVNLGRLyrSLGE 401
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 402 NSMaeEWYKRALQVAhkaeilsplgalyyntgryEEALQIYQEAAALQPSQR-ELRLALAQVLAVMG---QT-----KEA 472
Cdd:cd24142 83 EAL--QYYEKGIEIL-------------------EEELQALQAASAEAEEEAeELKRKLSSALCALAeiyMTdlcdePDA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 473 EKMTNHIVSEETGC----LECYRLLSAIYSKQENHDKALDAIDKALQL-KPKDPKVISEL 527
Cdd:cd24142 142 EQRCEELITKALELdptnPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEA 201
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
488-591 |
2.04e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 64.17 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 488 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGG 567
Cdd:COG4785 74 QLYYERGVAYDSLGDYDLAIADFDQALELDPDLA----EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149
|
90 100
....*....|....*....|....
gi 2462534732 568 IQHIKGKYVSARAYYERALQLVPD 591
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPN 173
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
434-590 |
2.65e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.29 E-value: 2.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 434 RYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKA 513
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534732 514 LQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVP 590
Cdd:COG5010 81 LQLDPNNPELYYNL----ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
216-611 |
3.57e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 66.16 E-value: 3.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 216 PHNAKVHYNYANFLKDQGRNKEAIYHYrTALKLYP--RHASALNNLGTLTRDTAEAKMyyQRALQLHPQHNRALFNLGNL 293
Cdd:TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDL-TASCIIDgfRNEQSAQAVERLLKKFAESKA--KEILETKPENLPSVTFVGNY 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 294 LKSQeKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQ---ERFKEAEEIYQTGIkncpDSSDL-------HNNYGVFLV 363
Cdd:TIGR00990 268 LQSF-RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESkadESYEEAARAFEKAL----DLGKLgekeaiaLNLRGTFKC 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 364 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRAL-QVAHKAEILSPLGALYYNTGRYEEALQIY 442
Cdd:TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALkLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 443 QEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPK-DP 521
Cdd:TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKEtKP 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 522 KVIS---------ELFFTKGNQLREQNLLDKAfesyrvaVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQL--VP 590
Cdd:TIGR00990 503 MYMNvlplinkalALFQWKQDFIEAENLCEKA-------LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELarTE 575
|
410 420
....*....|....*....|.
gi 2462534732 591 DSKLLKENLAKLDRLEKRLQE 611
Cdd:TIGR00990 576 GELVQAISYAEATRTQIQVQE 596
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
245-383 |
5.24e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 5.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 245 ALKLYPRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSL 324
Cdd:COG5010 15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462534732 325 ASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSP 383
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
232-560 |
5.75e-11 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 65.87 E-value: 5.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 232 QGRNKEAIYHYRTALKLYPRHASALNNLGTLT---RDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQ--EKKEEAITL 306
Cdd:PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAmarKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQspEKALAFIAS 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 307 LKDSIKygPEFADAYSSL--------ASLLAEQERFKEAEEIYQTGIKNCPDS--------SDLHNN------------- 357
Cdd:PRK11447 444 LSASQR--RSIDDIERSLqndrlaqqAEALENQGKWAQAAELQRQRLALDPGSvwltyrlaQDLRQAgqrsqadalmrrl 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 358 -------------YGVFLVDTGLPEKAVAHYQQ-------------AIKLSPSHHVAMVNlgRLyRSLGENSMAEEWYKR 411
Cdd:PRK11447 522 aqqkpndpeqvyaYGLYLSGSDRDRAALAHLNTlpraqwnsniqelAQRLQSDQVLETAN--RL-RDSGKEAEAEALLRQ 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 412 alQVAhKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYR 491
Cdd:PRK11447 599 --QPP-STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462534732 492 LLSAIYSKQENHDKALDAIDK-ALQLKPKDPKVISELFFTKGNQLREQNLL-DKAFESYR---VAVQLNPDQAQ 560
Cdd:PRK11447 676 RVALAWAALGDTAAAQRTFNRlIPQAKSQPPSMESALVLRDAARFEAQTGQpQQALETYKdamVASGITPTRPQ 749
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
205-281 |
7.53e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.03 E-value: 7.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 205 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIyHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 281
Cdd:COG3063 12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlleLGDYDEALAYLERALELDP 90
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
293-386 |
1.64e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 293 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEiYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 372
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....
gi 2462534732 373 AHYQQAIKLSPSHH 386
Cdd:COG3063 80 AYLERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
394-475 |
1.71e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.97 E-value: 1.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 394 RLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEA 472
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
...
gi 2462534732 473 EKM 475
Cdd:COG5010 142 KAA 144
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
505-611 |
2.48e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.48 E-value: 2.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 505 KALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYER 584
Cdd:COG4235 1 EAIARLRQALAANPNDA----EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER 76
|
90 100
....*....|....*....|....*..
gi 2462534732 585 ALQLVPDSKLLKENLAKLDRLEKRLQE 611
Cdd:COG4235 77 ALALDPDNPEALYLLGLAAFQQGDYAE 103
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
225-591 |
1.39e-09 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 61.15 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 225 YANFLKDQG----RNKE---AIYHYRTALKL------YPRHASALNNLGTLTRDTAEAKmyyqRALQLHPQHNRALFNLG 291
Cdd:TIGR00990 126 YAAKLKEKGnkayRNKDfnkAIKLYSKAIECkpdpvyYSNRAACHNALGDWEKVVEDTT----AALELDPDYSKALNRRA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 292 NLLKSQEKKEEAITLLKDSIKYGpEFADAYSS--LASLLAEQERFKeAEEIYQTGIKNCPDSSDLHNNYGVFLvdtglPE 369
Cdd:TIGR00990 202 NAYDGLGKYADALLDLTASCIID-GFRNEQSAqaVERLLKKFAESK-AKEILETKPENLPSVTFVGNYLQSFR-----PK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 370 KAVAHYQQAIKLSPSHHVAMVNLGRlyRSLgeNSMAEEWYKRALQVahkaeilsplgalyyntgrYEEALQiyqeaaalq 449
Cdd:TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGL--KSP--ESKADESYEEAARA-------------------FEKALD--------- 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 450 psqrelrlalaqvlavMGQTKEAEKmtnhIVSEETGCLECYRllsaiyskqENHDKALDAIDKALQLKPKdpkvISELFF 529
Cdd:TIGR00990 323 ----------------LGKLGEKEA----IALNLRGTFKCLK---------GKHLEALADLSKSIELDPR----VTQSYI 369
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 530 TKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 591
Cdd:TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
216-342 |
1.57e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 58.50 E-value: 1.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 216 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRAL--QLHPQHNRALFNL 290
Cdd:TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFlcqQGKYEQAMQQFEQAIedPLYPQPARSLENA 141
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 291 GNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQ 342
Cdd:TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
405-518 |
1.87e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.89 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 405 AEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEET 484
Cdd:COG5010 40 DELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP 119
|
90 100 110
....*....|....*....|....*....|....
gi 2462534732 485 GCLECYRLLSAIYSKQENHDKALDAIDKALQLKP 518
Cdd:COG5010 120 DNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
535-614 |
4.10e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 4.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 535 LREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 614
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
428-519 |
4.30e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 4.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 428 LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMtNHIVSEETGCLECYRLLSAIYSKQENHDKAL 507
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2462534732 508 DAIDKALQLKPK 519
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
264-352 |
1.12e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.46 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 264 RDTAEAKMYYQRALQLHPQHN---RALFNLGNLLKSQEKKEEAITLLKDSIKYGPE---FADAYSSLASLLAEQERFKEA 337
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKA 86
|
90
....*....|....*
gi 2462534732 338 EEIYQTGIKNCPDSS 352
Cdd:COG1729 87 RATLEELIKKYPDSE 101
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
205-281 |
1.94e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.81 E-value: 1.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 205 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 281
Cdd:COG5010 74 LALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALllsLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
499-605 |
2.73e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.30 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 499 KQENHDKALDAIDKALQLKPKDPKVISELFFtKGNQLREQNLLDKAFESYRVAVQLNPD---QAQAWMNMGGIQHIKGKY 575
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDY 83
|
90 100 110
....*....|....*....|....*....|
gi 2462534732 576 VSARAYYERALQLVPDSKLLKENLAKLDRL 605
Cdd:COG1729 84 DKARATLEELIKKYPDSEAAKEARARLARL 113
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
535-614 |
3.00e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.71 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 535 LREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYyERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 614
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
307-587 |
3.48e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 54.54 E-value: 3.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 307 LKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNcPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPShh 386
Cdd:COG4785 29 LLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPD-- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 387 vamvnlgrlyrslgensMAEEWYKRalqvahkaeilsplGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVM 466
Cdd:COG4785 106 -----------------LAEAYNNR--------------GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 467 GQTKEAEkmtnhivseetgclecyrllsaiyskqenhdkalDAIDKALQLKPKDPKVISELFFTKGnqlreqnlldkafe 546
Cdd:COG4785 155 GRYELAI----------------------------------ADLEKALELDPNDPERALWLYLAER-------------- 186
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2462534732 547 syrvavQLNPDQAQAWMNM--GGIQHIKGKYVSARAYYERALQ 587
Cdd:COG4785 187 ------KLDPEKALALLLEdwATAYLLQGDTEEARELFKLALA 223
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
231-327 |
4.19e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.53 E-value: 4.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 231 DQGRNKEAIYHYRTALKLYPRH---ASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNR---ALFNLGNLLKSQEKKE 301
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAyyaLGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYD 84
|
90 100
....*....|....*....|....*.
gi 2462534732 302 EAITLLKDSIKYGPEFADAYSSLASL 327
Cdd:COG1729 85 KARATLEELIKKYPDSEAAKEARARL 110
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
232-475 |
6.85e-08 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 54.53 E-value: 6.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 232 QGRNKEAIYHYRTALKLYPRHASAlnnlgtltRDTAEAKMYYQ------------RALQLHPQHNRALFNLGNLLKSQEK 299
Cdd:COG3071 63 LGDYERRDEYLAQALELAPEAELA--------VLLTRAELLLDqgqaeqalatleALRAGAPRHPQVLRLLLQAYRQLGD 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 300 KEEAITLLKDSIKYGPEFADAYSSLAsLLAEQERFKEA---EEIYQTGIKNCPDS----SDLHNNYGVFLVDTGLPEKAV 372
Cdd:COG3071 135 WEELLELLPALRKHKALSAEEAQALE-RRAYLGLLRQAardAEALKALWKALPRAerrdPELAAAYARALIALGDHDEAE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 373 AHYQQAIKLSPSHHvamvnLGRLYRSLGENSmAEEWYKRALQVAHK----AEILSPLGALYYNTGRYEEALQIYQEAAAL 448
Cdd:COG3071 214 RLLREALKRQWDPR-----LVRLYGRLQGGD-PAKQLKRAEKWLKKhpndPDLLLALGRLCLRNQLWGKAREYLEAALAL 287
|
250 260
....*....|....*....|....*..
gi 2462534732 449 QPSqRELRLALAQVLAVMGQTKEAEKM 475
Cdd:COG3071 288 RPS-AEAYAELARLLEQLGDPEEAAEH 313
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
500-592 |
7.68e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.38 E-value: 7.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 500 QENHDKALDAIDKALQLKPKDPKVIsELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSAR 579
Cdd:COG4785 49 AAAALAAAALAAERIDRALALPDLA-QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAAL 127
|
90
....*....|...
gi 2462534732 580 AYYERALQLVPDS 592
Cdd:COG4785 128 EDFDRALELDPDY 140
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
433-496 |
8.16e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 49.50 E-value: 8.16e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462534732 433 GRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAI 496
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
543-614 |
8.67e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 8.67e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 543 KAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 614
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE 72
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
268-516 |
2.05e-07 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 53.02 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 268 EAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPE-FADAYSSLASLLAEqerfKEAEEIYQTGIK 346
Cdd:cd24142 18 LALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGG----EEALQYYEKGIE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 347 NCpdssdlhnnygvflvdtglpEKAVAHYQQAIKLSPSHHVAMVN-LGRLYRSLGENSMA------------EEWYKRAL 413
Cdd:cd24142 94 IL--------------------EEELQALQAASAEAEEEAEELKRkLSSALCALAEIYMTdlcdepdaeqrcEELITKAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 414 QVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAAL---------------------QPSqRELRLALAQVLAVMGQTKE 471
Cdd:cd24142 154 ELDPTnPEALQTLASLRISQQRPDEAKEALRRSLELwkdlkeedeeeaeedeaeeedVPS-YEFRISLAKLLIELEMYEE 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2462534732 472 AEKMTNHIVSEETGCLE-------CYRLLS--AIYSKQENHDKALDAIDKALQL 516
Cdd:cd24142 233 ALEVLEQLLDEDDEDVEvwyllgwAYYLLGekEQEEAAELLRDARELLEKALKL 286
|
|
| pgaA |
PRK10049 |
outer membrane protein PgaA; Provisional |
429-540 |
2.18e-07 |
|
outer membrane protein PgaA; Provisional
Pssm-ID: 236644 [Multi-domain] Cd Length: 765 Bit Score: 53.95 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 429 YYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEcYRLLSAIYSKQENHDKALD 508
Cdd:PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137
|
90 100 110
....*....|....*....|....*....|...
gi 2462534732 509 AIDKALQLKPKDPKVISELFFT-KGNQLREQNL 540
Cdd:PRK10049 138 AMTQALPRAPQTQQYPTEYVQAlRNNRLSAPAL 170
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
388-451 |
4.68e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 4.68e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534732 388 AMVNLGRLYRSLGENSMAEEWYKRALQVAHK---------AEILSPLGALYYNTGRYEEALQIYQEAAALQPS 451
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdhpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
431-567 |
6.06e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 49.67 E-value: 6.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 431 NTGRYEEALQIYQEAAALQ--PSQRelrlalAQVLAVMGqtkeaekmtnhivseetgclecyrllsAIYSKQENHDKALD 508
Cdd:PRK02603 47 ADGEYAEALENYEEALKLEedPNDR------SYILYNMG---------------------------IIYASNGEHDKALE 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 509 AIDKALQLKPKDP---KVISELFFTKGNQLREQ-------NLLDKAFESYRVAVQLNPD---QAQAWMNMGG 567
Cdd:PRK02603 94 YYHQALELNPKQPsalNNIAVIYHKRGEKAEEAgdqdeaeALFDKAAEYWKQAIRLAPNnyiEAQNWLKTTG 165
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
328-414 |
6.29e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 6.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 328 LAEQERFKEAEEIYQTGIKNCPDSS---DLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHV---AMVNLGRLYRSLGE 401
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|...
gi 2462534732 402 NSMAEEWYKRALQ 414
Cdd:COG1729 83 YDKARATLEELIK 95
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
265-516 |
6.99e-07 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 51.54 E-value: 6.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 265 DTAEAKMYYQRALQLHP--QHNR---ALFNLG-------NLLKSQEKKEEAITLLKDsIKYGPEFADAYSSLASLLAEQE 332
Cdd:pfam17874 16 DAERALELAEQALALLPedDLLArglATFVLGeaylclgDLDAALQAMREAEALARR-ADSPHVTLWALLQQGEILRAQG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 333 RFKEAEEIYQTGIKNCPDSS--------DLHNNYGVFLVDTGLPEKAVAHYQQAIKL----SPSHHV-AMVNLGRLYRSL 399
Cdd:pfam17874 95 RLHQALETYQQALQLARDHGlqhlplhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqwEPDAAVdAYVLLARIALAQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 400 GENSMAEEWYKRALQVAHK--------AEILSPLGALYYNTGRYEEALQIYQEAAALQPS-----QRELRLaLAQVLAVM 466
Cdd:pfam17874 175 GELEEALTLLRRAELLARQsffhvdwlANAERVRVRLWLARGDLRAAVRWLRAAEPPSDAdnhflERELRN-LARVLLAL 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534732 467 GQTKEAEKMTN--HIVSEETG----CLECYRLLSAIYSKQENHDKALDAIDKALQL 516
Cdd:pfam17874 254 GRFDDALSLLErlQNLAEQLGrvrsLIENLILQALALLALGRPDEALQALLDALSL 309
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
193-309 |
8.97e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 8.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 193 KTVKQNEIWLSREslfrsgvqtlPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG--TLTRDTAEAK 270
Cdd:TIGR02917 754 EAVKTLEAWLKTH----------PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAwlYLELKDPRAL 823
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534732 271 MYYQRALQLHP-----------------QHNRAL-----------------FNLGNLLKSQEKKEEAITLLKD 309
Cdd:TIGR02917 824 EYAERALKLAPnipaildtlgwllvekgEADRALpllrkavniapeaaairYHLALALLATGRKAEARKELDK 896
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
203-350 |
9.17e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.91 E-value: 9.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 203 SRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKL-------YPRHASALNNLGTLTR---DTAEAKMY 272
Cdd:TIGR00990 451 SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketkpmYMNVLPLINKALALFQwkqDFIEAENL 530
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534732 273 YQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSikygPEFADAYSSLASLLAeqerFKEAEEIYQTGIKNCPD 350
Cdd:TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA----AELARTEGELVQAIS----YAEATRTQIQVQEDYPV 600
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
528-616 |
9.69e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.88 E-value: 9.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 528 FFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAK------ 601
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQdylkag 90
|
90
....*....|....*.
gi 2462534732 602 -LDRLEKRLQEVREKD 616
Cdd:COG2956 91 lLDRAEELLEKLLELD 106
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
362-461 |
1.33e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.29 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 362 LVDTGLPEKAVAHYQQAIKLSPSHHV---AMVNLGRLYRSLGENSMAEEWYKRALQvAHKAEILSP-----LGALYYNTG 433
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLK-RYPDSPKAPdallkLGLSYLELG 81
|
90 100
....*....|....*....|....*...
gi 2462534732 434 RYEEALQIYQEAAALQPSQRELRLALAQ 461
Cdd:COG1729 82 DYDKARATLEELIKKYPDSEAAKEARAR 109
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
213-557 |
1.66e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 51.24 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 213 QTLPHNAKVHYNYANFLKDQGRNKEAIyhyrTALKLYPRHASAlnnlgtltRDTAeAKMYYQ--RALQLHPQHNRAL--- 287
Cdd:PRK11447 175 ADYPGNTGLRNTLALLLFSSGRRDEGF----AVLEQMAKSPAG--------RDAA-AQLWYGqiKDMPVSDASVAALqky 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 288 ---FNLGNLL-KSQEKKEEAITLLKDsikygPEFADAYSSLAslLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLV 363
Cdd:PRK11447 242 lqvFSDGDSVaAARSQLAEQQKQLAD-----PAFRARAQGLA--AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 364 DTGLPEKAVAHYQQAIKLSPSHHvamvNLGRlYRSLGENSMaeewYKRALQVAHKAeilspLGAlyyntGRYEEALQIYQ 443
Cdd:PRK11447 315 QQGDRARAVAQFEKALALDPHSS----NRDK-WESLLKVNR----YWLLIQQGDAA-----LKA-----NNLAQAERLYQ 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 444 EAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYsKQENHDKALDAIDkalQLKPKDPKV 523
Cdd:PRK11447 376 QARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALAFIA---SLSASQRRS 451
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2462534732 524 ISEL--------FFTKGNQLREQNLLDKAFESYRVAVQLNPD 557
Cdd:PRK11447 452 IDDIerslqndrLAQQAEALENQGKWAQAAELQRQRLALDPG 493
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
225-448 |
1.72e-06 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 49.54 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 225 YANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL-------TRDTAEAKMYYQRALQLhpQHNRALFNLGNLLKS- 296
Cdd:COG0790 35 AAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMyaegrgvPKDYEKALEWFEKAAEQ--GDAEAQYNLGLMYEEg 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 297 ---QEKKEEAITLLKDSIKYGpeFADAYSSLASLlaeqerfkeaeeiYQTGIKNCPDssdlhnnygvflvdtglPEKAVA 373
Cdd:COG0790 113 lgvPQDYAKALEWYEKAAEQG--DADAQYNLGLL-------------YLNGEGVPKD-----------------PAKAAE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 374 HYQQAIKLSpsHHVAMVNLGRLYRSlGE-----NSMAEEWYKRALQVAHKAEILSpLGALYYN----TGRYEEALQIYQE 444
Cdd:COG0790 161 WYRKAAEQG--DADAQYNLGVLYEN-GRgvpkdPAKALEWYRKAAEQGDADAQYN-LGRLYLNgegvEKDLEKALRWLRK 236
|
....
gi 2462534732 445 AAAL 448
Cdd:COG0790 237 AAEQ 240
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
362-591 |
3.28e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 49.52 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 362 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGEnsmaeewYKRALQVA---HKAEILSPLGALYYNTGRYEEA 438
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD-------WEELLELLpalRKHKALSAEEAQALERRAYLGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 439 L-QIYQEAAALQ-------PSQR---ELRLALAQVLAVMGQTKEAEKMTNHIVSEE--TGCLECYRLLsaiysKQENHDK 505
Cdd:COG3071 168 LrQAARDAEALKalwkalpRAERrdpELAAAYARALIALGDHDEAERLLREALKRQwdPRLVRLYGRL-----QGGDPAK 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 506 ALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDqAQAWMNMGGIQHIKGKYVSARAYYERA 585
Cdd:COG3071 243 QLKRAEKWLKKHPNDP----DLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKA 317
|
....*.
gi 2462534732 586 LQLVPD 591
Cdd:COG3071 318 LALALG 323
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
217-350 |
4.76e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 48.75 E-value: 4.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 217 HNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH--ASALNNLGTLTRDTAEAKMyyQRALQLHPQHNRALFNLGNLL 294
Cdd:COG3071 191 RDPELAAAYARALIALGDHDEAERLLREALKRQWDPrlVRLYGRLQGGDPAKQLKRA--EKWLKKHPNDPDLLLALGRLC 268
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534732 295 KSQEKKEEAITLLKDSIKYGPEfADAYSSLASLLAEQERFKEAEEIYQTGIKNCPD 350
Cdd:COG3071 269 LRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
316-444 |
5.55e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 47.95 E-value: 5.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 316 EFADAYSS---LASLLAEQERFKEAEEIYQTGIK-NCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH--HVAM 389
Cdd:COG4700 84 EFADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAH 163
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2462534732 390 VNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQE 444
Cdd:COG4700 164 LLYARALEALGDLEAAEAELEALARRYSGPEARYRYAKFLARQGRTAEAKELLEE 218
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
251-418 |
7.04e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 48.37 E-value: 7.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 251 RHASALNNLGTLTRDTAEAKMYYQ---RALQLHPqhnRALFNLGNLLKSQEKKEEAITLLKDSIKYG--PEFADAYSSLA 325
Cdd:COG3071 160 ERRAYLGLLRQAARDAEALKALWKalpRAERRDP---ELAAAYARALIALGDHDEAERLLREALKRQwdPRLVRLYGRLQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 326 SLLAEqERFKEAEEIyqtgIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVnLGRLYRSLGENSMA 405
Cdd:COG3071 237 GGDPA-KQLKRAEKW----LKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAE-LARLLEQLGDPEEA 310
|
170
....*....|...
gi 2462534732 406 EEWYKRALQVAHK 418
Cdd:COG3071 311 AEHYRKALALALG 323
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
365-516 |
1.00e-05 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 48.08 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 365 TGLPEKAVAHYQQAIKLSPS--HHVAMV---NLGRLYRSLGENSMAEEWYKRALQVAHKAEI-------LSPLGALYYNT 432
Cdd:pfam17874 14 KGDAERALELAEQALALLPEddLLARGLatfVLGEAYLCLGDLDAALQAMREAEALARRADSphvtlwaLLQQGEILRAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 433 GRYEEALQIYQEAAALQPSQRELRL--------ALAQVLAVMGQTKEAE-----------KMTNHIVseetgcLECYRLL 493
Cdd:pfam17874 94 GRLHQALETYQQALQLARDHGLQHLplhgfllvGLADLLYEWNDLEEAEqhaqqgiqlgrQWEPDAA------VDAYVLL 167
|
170 180
....*....|....*....|...
gi 2462534732 494 SAIYSKQENHDKALDAIDKALQL 516
Cdd:pfam17874 168 ARIALAQGELEEALTLLRRAELL 190
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
334-424 |
1.15e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 46.20 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 334 FKEAEEIYQTGIK---NCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSM------ 404
Cdd:PRK02603 51 YAEALENYEEALKleeDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEeagdqd 130
|
90 100
....*....|....*....|.
gi 2462534732 405 -AEEWYKRALQVAHKAEILSP 424
Cdd:PRK02603 131 eAEALFDKAAEYWKQAIRLAP 151
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
350-416 |
1.16e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.53 E-value: 1.16e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534732 350 DSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLS-----PSHH---VAMVNLGRLYRSLGENSMAEEWYKRALQVA 416
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHPltaTTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
498-601 |
1.57e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.82 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 498 SKQENHD--KALDAIDKALQLKpKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGK- 574
Cdd:PRK02603 44 SAQADGEyaEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEk 122
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2462534732 575 -------------YVSARAYYERALQLVPDSKLLKENLAK 601
Cdd:PRK02603 123 aeeagdqdeaealFDKAAEYWKQAIRLAPNNYIEAQNWLK 162
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
219-282 |
2.64e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.76 E-value: 2.64e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534732 219 AKVHYNYANFLKDQGRNKEAIYHYRTALKLY--------PRHASALNNLGTLTR---DTAEAKMYYQRALQLHPQ 282
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLelgRYEEALELLERALALAEK 77
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
349-604 |
2.81e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 47.39 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 349 PDSSDLHNNYGVFLVDTGLPEKAVAHYQQaiklspshhVAMVNLGRlyrslgeNSMAEEWYKralQVahKAEILSPLG-- 426
Cdd:PRK11447 178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQ---------MAKSPAGR-------DAAAQLWYG---QI--KDMPVSDASva 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 427 ALYYNTGRYEEALQIYQEAAALQPSQREL-------RL-ALAQVLAvmGQTKEAEKMTNHIVSEETGCLECYRLLSAIYS 498
Cdd:PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLadpafraRAqGLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 499 KQENHDKALDAIDKALQLKPKDPKvISE-----------LFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGG 567
Cdd:PRK11447 315 QQGDRARAVAQFEKALALDPHSSN-RDKwesllkvnrywLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGD 393
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462534732 568 IQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDR 604
Cdd:PRK11447 394 VAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
368-475 |
4.53e-05 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 45.96 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 368 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ--VAHKAEILSPLGALYYNTGRYEEALQIYQEA 445
Cdd:PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEqdPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275
|
90 100 110
....*....|....*....|....*....|
gi 2462534732 446 AALQPSQrELRLALAQVLAVMGQTKEAEKM 475
Cdd:PRK11788 276 LEEYPGA-DLLLALAQLLEEQEGPEAAQAL 304
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
226-340 |
5.34e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 45.70 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 226 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHN-RALFNLG---------- 291
Cdd:cd24142 7 AEELLDQGNFELALKFLQRALELEPNNVEALELLGEIlleLGDVEEAREVLLRAIELDPDGGyEKYLYLGqlsggeealq 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 292 ----------NLLKSQEKK-------------------------------------EEAITLLKDSIKYGPEFADAYSSL 324
Cdd:cd24142 87 yyekgieileEELQALQAAsaeaeeeaeelkrklssalcalaeiymtdlcdepdaeQRCEELITKALELDPTNPEALQTL 166
|
170
....*....|....*.
gi 2462534732 325 ASLLAEQERFKEAEEI 340
Cdd:cd24142 167 ASLRISQQRPDEAKEA 182
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
297-385 |
5.62e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 297 QEKKEEAITLLKDSIKYGPE---FADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS---DLHNNYGVFLVDTGLPEK 370
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
|
90
....*....|....*
gi 2462534732 371 AVAHYQQAIKLSPSH 385
Cdd:COG1729 86 ARATLEELIKKYPDS 100
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
419-519 |
7.18e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 7.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 419 AEILSPLGALYYNTGRYEEALQIYQEAAALQpsqrelrlalaqvlavmgqtkEAEKMTNHIvseetGCLECYRLLSAIYS 498
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIA---------------------RRLLGPDHP-----LTATTLLNLGRLYL 56
|
90 100
....*....|....*....|.
gi 2462534732 499 KQENHDKALDAIDKALQLKPK 519
Cdd:pfam13424 57 ELGRYEEALELLERALALAEK 77
|
|
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
265-461 |
8.18e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 45.27 E-value: 8.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 265 DTAEAKMYYQRALQLHPQH---NRALFNLgnllKSQEKK-EEAITLLKDSIKYGPEFADAYSSL-ASLLAEQERfkEAEE 339
Cdd:COG3898 167 DTEAALALAEEALALAPKLpwaQDALLEL----QAAAGDwDGALATLDAALKAGLLDKDVARRRrAVLLTARAR--ELEE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 340 iyqtgikncpdssdlhnnygvflvdtGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENsmaeewyKRALQVAHKA 419
Cdd:COG3898 241 --------------------------GDPDEARELAIEALKLAPDLVPAAVLAARLLIAQGKL-------RKAAKVLEKA 287
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462534732 420 EILSP---LGALYYNTGRYEEALQIYQEA---AALQPSQRELRLALAQ 461
Cdd:COG3898 288 WRAQPhpdLAAAYAELRPGDSALDRLKRAetlAALNPDHPESRLALAE 335
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
216-286 |
9.67e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.90 E-value: 9.67e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534732 216 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH---ASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRA 286
Cdd:COG1729 27 PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSyleLGDYDKARATLEELIKKYPDSEAA 103
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
395-475 |
1.78e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.13 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 395 LYRSlGENSMAEEWYKRALQV----AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQR---ELRLALAQVLAVMG 467
Cdd:COG1729 3 LLKA-GDYDEAIAAFKAFLKRypnsPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELG 81
|
....*...
gi 2462534732 468 QTKEAEKM 475
Cdd:COG1729 82 DYDKARAT 89
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
222-343 |
2.13e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 43.33 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 222 HYNYANFLKDQGRNKEAIYHYRTALK-LYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNR--ALFNLGNLLK 295
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAqalFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALE 171
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462534732 296 SQEKKEEAITLLKDSIKYGPeFADAYSSLASLLAEQERFKEAEEIYQT 343
Cdd:COG4700 172 ALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEE 218
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
390-475 |
3.06e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.95 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 390 VNLGRLYRSLGENSMAEEWYKRALQ--VAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQR--ELRLALAQVLAV 465
Cdd:COG4700 93 VRLADALLELGRYDEAIELYEEALTgiFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKssDAHLLYARALEA 172
|
90
....*....|
gi 2462534732 466 MGQTKEAEKM 475
Cdd:COG4700 173 LGDLEAAEAE 182
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
368-606 |
3.71e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.26 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 368 PEKAVAHYQQAIKLSPS---HHVAmvnLGRLYRSLGEnsmaeewYKRALQVaHKAEILSPlgalyyntgryeealqiyqe 444
Cdd:PRK11788 51 PDKAIDLFIEMLKVDPEtveLHLA---LGNLFRRRGE-------VDRAIRI-HQNLLSRP-------------------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 445 aaALQPSQREL-RLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKD-PK 522
Cdd:PRK11788 100 --DLTREQRLLaLQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSlRV 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 523 VIS----ELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQ----LVPDS-K 593
Cdd:PRK11788 178 EIAhfycEL----AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEqdpeYLSEVlP 253
|
250
....*....|...
gi 2462534732 594 LLKENLAKLDRLE 606
Cdd:PRK11788 254 KLMECYQALGDEA 266
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
500-615 |
4.89e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.62 E-value: 4.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 500 QENHDKALDAIDKALQLKPKDPKVIsELFftkGNQLREQNLLDKAFESYRVAVQLNPDQ-AQAWMNMGgiQHIKGKyvSA 578
Cdd:cd24142 13 QGNFELALKFLQRALELEPNNVEAL-ELL---GEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLG--QLSGGE--EA 84
|
90 100 110
....*....|....*....|....*....|....*..
gi 2462534732 579 RAYYERALQLVpdSKLLKENLAKLDRLEKRLQEVREK 615
Cdd:cd24142 85 LQYYEKGIEIL--EEELQALQAASAEAEEEAEELKRK 119
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
288-352 |
5.69e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 5.69e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534732 288 FNLGNLLKSQEKKEEAITLLKDSIKYG---PEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS 352
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
265-327 |
5.70e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 5.70e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534732 265 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASL 327
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
426-467 |
5.75e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.84 E-value: 5.75e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2462534732 426 GALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMG 467
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
532-573 |
5.92e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.84 E-value: 5.92e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2462534732 532 GNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKG 573
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
253-312 |
6.03e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 6.03e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534732 253 ASALNNLGTLTR---DTAEAKMYYQRALQL--------HPQHNRALFNLGNLLKSQEKKEEAITLLKDSIK 312
Cdd:pfam13424 3 ATALNNLAAVLRrlgRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
559-591 |
8.46e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 8.46e-04
10 20 30
....*....|....*....|....*....|...
gi 2462534732 559 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 591
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
226-260 |
9.98e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 9.98e-04
10 20 30
....*....|....*....|....*....|....*
gi 2462534732 226 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG 260
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLG 35
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
237-408 |
1.03e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 42.21 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 237 EAIYHYRTALkLYPRHASALNNLGTLTRDTAEAKmYYQRALQL----------------HPQHNRALFNLGNLLKSQEKK 300
Cdd:NF040586 544 REVLRRRRRV-LGPDHPRTLLSANNLARDLRELG-RYAEALDLleealeryrevlggpdHPDTLRAAKSLAVALRRAGRL 621
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 301 EEAITLLKDSI-----KYGPEFADAYS---SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLH--------NNYGVFLVD 364
Cdd:NF040586 622 EEALELAEDTYeryrrRFGPDHPDTLAaalSLANDLRALGDADEARELAREVLDRYRRVLGEDhpftlacrNNLAVLLRA 701
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462534732 365 TGLPEKAVAHYQQAI-----KLSPSHH---VAMVNLGRLYRSLGENSMAEEW 408
Cdd:NF040586 702 LGDPEEARELAEAALeglreRLGPDHPytlAAAVNLANDLAALGDLDAALGE 753
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
219-251 |
1.80e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.96 E-value: 1.80e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534732 219 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPR 251
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
301-356 |
2.11e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.79 E-value: 2.11e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534732 301 EEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHN 356
Cdd:pfam14559 5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
285-384 |
2.13e-03 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 38.42 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 285 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEF---ADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS---DLHNNY 358
Cdd:TIGR02795 1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKStyaPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkapDALLKL 80
|
90 100
....*....|....*....|....*.
gi 2462534732 359 GVFLVDTGLPEKAVAHYQQAIKLSPS 384
Cdd:TIGR02795 81 GMSLQELGDKEKAKATLQQVIKRYPG 106
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
559-591 |
3.05e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 3.05e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534732 559 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 591
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
425-462 |
3.39e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 35.86 E-value: 3.39e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2462534732 425 LGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQV 462
Cdd:pfam13428 7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
425-450 |
4.16e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 4.16e-03
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
219-252 |
4.21e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 4.21e-03
10 20 30
....*....|....*....|....*....|....
gi 2462534732 219 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH 252
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
488-520 |
4.43e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.43e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534732 488 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 520
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
496-567 |
4.57e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 38.45 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 496 IYSKQENHDKALDAIDKALQLKPKDPK------VI----SELFFTKGNQLREQNLLDKAFESYRVAVQLNPD---QAQAW 562
Cdd:CHL00033 81 IHTSNGEHTKALEYYFQALERNPFLPQalnnmaVIchyrGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGnyiEAQNW 160
|
....*
gi 2462534732 563 MNMGG 567
Cdd:CHL00033 161 LKITG 165
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
425-451 |
4.89e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.89e-03
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
362-416 |
5.42e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.77 E-value: 5.42e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534732 362 LVDTGLPEKAVAHYQQAIKL---SPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA 416
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
488-520 |
5.49e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 5.49e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534732 488 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 520
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
419-451 |
5.88e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 5.88e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534732 419 AEILSPLGALYYNTGRYEEALQIYQEAAALQPS 451
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
205-255 |
6.41e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.29 E-value: 6.41e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2462534732 205 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASA 255
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
529-592 |
6.93e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.39 E-value: 6.93e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534732 529 FTKGNQLREQNLLDKAFESYRVAVQLN---PDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDS 592
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| Mad3_BUB1_I |
pfam08311 |
Mad3/BUB1 homology region 1; Proteins containing this domain are checkpoint proteins involved ... |
312-345 |
7.19e-03 |
|
Mad3/BUB1 homology region 1; Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Pssm-ID: 462420 Cd Length: 123 Bit Score: 36.74 E-value: 7.19e-03
10 20 30
....*....|....*....|....*....|....
gi 2462534732 312 KYGPEFADAYSSLASLLAEQERFKEAEEIYQTGI 345
Cdd:pfam08311 90 GIGTKLALFYEEWAELLERQGRFKEADEIYQLGI 123
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
291-331 |
7.23e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 34.75 E-value: 7.23e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2462534732 291 GNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQ 331
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
534-614 |
7.84e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.51 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 534 QLREQNLLDKAFESYRVAVQLNPD---QAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQ 610
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
|
....
gi 2462534732 611 EVRE 614
Cdd:COG1729 82 DYDK 85
|
|
| FAT |
pfam02259 |
FAT domain; The FAT domain is named after FRAP, ATM and TRRAP. |
196-385 |
7.95e-03 |
|
FAT domain; The FAT domain is named after FRAP, ATM and TRRAP.
Pssm-ID: 396714 [Multi-domain] Cd Length: 342 Bit Score: 38.87 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 196 KQNEIWLSRESLFR-SGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLgtLTRDTAEAKMYYQ 274
Cdd:pfam02259 161 KSGRFSLAEKALLKlLGEDPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSG--LEVINPTNLEEFT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 275 RALqlhpqhNRALFNLGNLL------KSQEKKEEAITLLKDSIKYGPEFADAYSSLAslLAEQERFKEAEEiyqtgIKNC 348
Cdd:pfam02259 239 ELL------ARCYLLKGKWQaalgqnWAEEKSEEILQAYLLATQFDPSWYKAWHTWA--LFNFEVLRKEEQ-----GKEE 305
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462534732 349 PDSSDLhnnygvflvdTGLPEKAVAHYQQAIKLSPSH 385
Cdd:pfam02259 306 EGPEDL----------SRYVVPAVEGYLRSLSLSSEN 332
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
366-472 |
8.42e-03 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 37.28 E-value: 8.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534732 366 GLPEKAVAHYQQAIklspshhvamvnlgRLYR--SLGENSmAEEW---YKRALQvAHKAEILSPLGALYYNTGRYEEALQ 440
Cdd:smart01043 19 ADPEAALALLEAAL--------------ALYRgpLLADVP-DEDWaeaERERLR-ELRLEALEALAEALLALGRHEEALA 82
|
90 100 110
....*....|....*....|....*....|..
gi 2462534732 441 IYQEAAALQPSQRELRLALAQVLAVMGQTKEA 472
Cdd:smart01043 83 LLERLLALDPLRERLHRLLMRALYRAGRRAEA 114
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
559-591 |
9.51e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.04 E-value: 9.51e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534732 559 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 591
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
393-433 |
9.63e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 34.37 E-value: 9.63e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2462534732 393 GRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTG 433
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDnPEAYYNLGLAYYKLG 42
|
|
| |
