NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2462537347|ref|XP_054230635|]
View 

RCC1 and BTB domain-containing protein 1 isoform X3 [Homo sapiens]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 11474102)

RCC1 (regulator of chromosome condensation) domain-containing protein similar to Arabidopsis UVR8 (UV RESISTANCE LOCUS 8), which plays an important role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway.

Gene Ontology:  GO:0003682|GO:0005085
PubMed:  9510255|18442486

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 13-277 1.69e-68

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 216.77  E-value: 1.69e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  13 LSPQEIASIRKVCVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTE 92
Cdd:COG5184    39 STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYY-HSCALKS 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  93 DGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLliKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPR 172
Cdd:COG5184   116 DGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGL--SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPV 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 173 KVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEG 252
Cdd:COG5184   194 QVGG---LSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDG 268

                         250       260
                  ....*....|....*....|....*
gi 2462537347 253 LLYAWGANTYGQLGTGNKNNLLSPA 277
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRSTPV 293
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 13-277 1.69e-68

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 216.77  E-value: 1.69e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  13 LSPQEIASIRKVCVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTE 92
Cdd:COG5184    39 STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYY-HSCALKS 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  93 DGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLliKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPR 172
Cdd:COG5184   116 DGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGL--SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPV 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 173 KVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEG 252
Cdd:COG5184   194 QVGG---LSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDG 268

                         250       260
                  ....*....|....*....|....*
gi 2462537347 253 LLYAWGANTYGQLGTGNKNNLLSPA 277
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRSTPV 293
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
199-248 1.45e-13

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 64.08  E-value: 1.45e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462537347 199 NGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLAL 248
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 13-277 1.69e-68

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 216.77  E-value: 1.69e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  13 LSPQEIASIRKVCVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTE 92
Cdd:COG5184    39 STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYY-HSCALKS 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  93 DGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLliKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPR 172
Cdd:COG5184   116 DGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGL--SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPV 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 173 KVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEG 252
Cdd:COG5184   194 QVGG---LSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDG 268

                         250       260
                  ....*....|....*....|....*
gi 2462537347 253 LLYAWGANTYGQLGTGNKNNLLSPA 277
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRSTPV 293
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 34-279 6.65e-65

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 207.52  E-value: 6.65e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  34 ALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTEDGVVYAWGHNGYSQLGNGTTN 113
Cdd:COG5184    10 SCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGD-HTCALKADGTVWCWGNNSYGQLGDGTTT 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 114 QGIAPVQVCTnllIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLhiKRVVGIACGQTSS 193
Cdd:COG5184    87 DRTTPVKVPG---LTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGL--SGVVAIAAGGYHT 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 194 MAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVcvNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNL 273
Cdd:COG5184   162 CALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGV--VAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDR 239


                  ....*.
gi 2462537347 274 LSPAHI 279
Cdd:COG5184   240 ATPVQV 245
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 14-276 1.04e-64

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 207.14  E-value: 1.04e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  14 SPQEIASIRKVCVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLeGLCGKKIKSLSYGSGpHVLLSTED 93
Cdd:COG5184    90 TPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQV-DAGLSGVVAIAAGGY-HTCALKSD 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  94 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTnllIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRK 173
Cdd:COG5184   168 GTVWCWGANSYGQLGDGTTTDRPTPVQVGG---LSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQ 244

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 174 VTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEGL 253
Cdd:COG5184   245 VAG---LTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGLSG--VVAVAAGSSHTCALLTDGT 319

                         250       260
                  ....*....|....*....|...
gi 2462537347 254 LYAWGANTYGQLGTGNKNNLLSP 276
Cdd:COG5184   320 VWCWGDNAYGQLGDGTTTDRSTP 342
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 86-280 1.14e-58

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 191.34  E-value: 1.14e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  86 HVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVctnLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGST 165
Cdd:COG5184     9 HSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRV---PGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 166 ANQPTPRKVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVcVNQIVCGYAHT 245
Cdd:COG5184    86 TDRTTPVKVPG---LTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSG-VVAIAAGGYHT 161

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2462537347 246 LALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIM 280
Cdd:COG5184   162 CALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVG 196
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 37-225 1.64e-48

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 165.15  E-value: 1.64e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  37 VTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGkkIKSLSYGSGpHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGI 116
Cdd:COG5184   164 LKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSG--VVAVAAGGD-HSCALKSDGTVWCWGSNSSGQLGDGTTTDRA 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 117 APVQVctnLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNclhIKRVVGIACGQTSSMAV 196
Cdd:COG5184   241 TPVQV---AGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPG---LSGVVAVAAGSSHTCAL 314

                         170       180
                  ....*....|....*....|....*....
gi 2462537347 197 LDNGEVYGWGYNGNGQLGLGNNGNQLTPV 225
Cdd:COG5184   315 LTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 131-277 3.23e-44

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 153.98  E-value: 3.23e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347 131 VEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNclhIKRVVGIACGQTSSMAVLDNGEVYGWGYNGN 210
Cdd:COG5184     1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPG---LSNVVAVAAGGDHTCALKADGTVWCWGNNSY 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462537347 211 GQLGLGNNGNQLTPVRVAALHSvcVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPA 277
Cdd:COG5184    78 GQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPV 142
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
199-248 1.45e-13

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 64.08  E-value: 1.45e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462537347 199 NGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLAL 248
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
146-196 5.86e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 56.76  E-value: 5.86e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462537347 146 DGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHiKRVVGIACGQTSSMAV 196
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSG-NKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
93-143 2.66e-10

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 54.83  E-value: 2.66e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462537347  93 DGVVYAWGHNGYSQLGNGTTNQGIAPVQVcTNLLIKQVVEVACGSHHSMAL 143
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKV-EGLSGNKVVQVACGGDHTVAL 50
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 13-119 1.57e-09

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 58.06  E-value: 1.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462537347  13 LSPQEIASIRKVCVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLcgKKIKSLSYGSGpHVLLSTE 92
Cdd:COG5184   240 ATPVQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGL--SGVVAVAAGSS-HTCALLT 316

                          90       100
                  ....*....|....*....|....*..
gi 2462537347  93 DGVVYAWGHNGYSQLGNGTTNQGIAPV 119
Cdd:COG5184   317 DGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
130-159 2.01e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 49.34  E-value: 2.01e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 2462537347 130 VVEVACGSHHSMALAADGEVFAWGYNNCGQ 159
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
235-264 9.17e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 47.42  E-value: 9.17e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 2462537347 235 VNQIVCGYAHTLALTDEGLLYAWGANTYGQ 264
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
251-285 5.44e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 42.89  E-value: 5.44e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2462537347 251 EGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEKER 285
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGN 35
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
40-89 9.07e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 42.12  E-value: 9.07e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462537347  40 NDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGpHVLL 89
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGD-HTVA 49
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
183-212 1.21e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 41.26  E-value: 1.21e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 2462537347 183 VVGIACGQTSSMAVLDNGEVYGWGYNGNGQ 212
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
76-106 5.43e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 33.94  E-value: 5.43e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2462537347  76 IKSLSYGSGpHVLLSTEDGVVYAWGHNGYSQ 106
Cdd:pfam13540   1 VVSVAAGDN-HTLALTSDGRVYCWGDNSYGQ 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH