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Conserved domains on  [gi|2462545834|ref|XP_054234756|]
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little elongation complex subunit 2 isoform X4 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
eIF-3_zeta super family cl46347
Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); This family is made up of ...
720-832 1.07e-28

Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); This family is made up of eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta/eIF3 p66/eIF3d). Eukaryotic initiation factor 3 is a multi-subunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. These functions and the complex nature of eIF3 suggest multiple interactions with many components of the translational machinery. The gene coding for the protein has been implicated in cancer in mammals.


The actual alignment was detected with superfamily member pfam10505:

Pssm-ID: 480687  Cd Length: 208  Bit Score: 114.32  E-value: 1.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462545834 720 SEYLAPQEGNFVYK----LFSLQDLLLLVRCSVQRIETRPRSKkrkkirrQFPVYVLPKVEYQACYGVEALTESELCRLW 795
Cdd:pfam10505   1 QEYIAPAEGNVAYKlwslQVGESDLLLLVRSSVDAVRTLPGGK-------LLPVHLLPKLEYQPCYGVEILTKSELCRLW 73
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2462545834 796 TESLLHSNSSFYVGRCSRKSLEVLLKVEIagpTLECL 832
Cdd:pfam10505  74 TELLLRPNTVLYRGRIDAFTSKLLLLEKL---TLESL 107
 
Name Accession Description Interval E-value
NARG2_C pfam10505
NMDA receptor-regulated gene protein 2 C-terminus; The transition of neuronal cells from ...
720-832 1.07e-28

NMDA receptor-regulated gene protein 2 C-terminus; The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, six in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi.


Pssm-ID: 463121  Cd Length: 208  Bit Score: 114.32  E-value: 1.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462545834 720 SEYLAPQEGNFVYK----LFSLQDLLLLVRCSVQRIETRPRSKkrkkirrQFPVYVLPKVEYQACYGVEALTESELCRLW 795
Cdd:pfam10505   1 QEYIAPAEGNVAYKlwslQVGESDLLLLVRSSVDAVRTLPGGK-------LLPVHLLPKLEYQPCYGVEILTKSELCRLW 73
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2462545834 796 TESLLHSNSSFYVGRCSRKSLEVLLKVEIagpTLECL 832
Cdd:pfam10505  74 TELLLRPNTVLYRGRIDAFTSKLLLLEKL---TLESL 107
 
Name Accession Description Interval E-value
NARG2_C pfam10505
NMDA receptor-regulated gene protein 2 C-terminus; The transition of neuronal cells from ...
720-832 1.07e-28

NMDA receptor-regulated gene protein 2 C-terminus; The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, six in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi.


Pssm-ID: 463121  Cd Length: 208  Bit Score: 114.32  E-value: 1.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462545834 720 SEYLAPQEGNFVYK----LFSLQDLLLLVRCSVQRIETRPRSKkrkkirrQFPVYVLPKVEYQACYGVEALTESELCRLW 795
Cdd:pfam10505   1 QEYIAPAEGNVAYKlwslQVGESDLLLLVRSSVDAVRTLPGGK-------LLPVHLLPKLEYQPCYGVEILTKSELCRLW 73
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2462545834 796 TESLLHSNSSFYVGRCSRKSLEVLLKVEIagpTLECL 832
Cdd:pfam10505  74 TELLLRPNTVLYRGRIDAFTSKLLLLEKL---TLESL 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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