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Conserved domains on  [gi|2462547718|ref|XP_054235668|]
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cytochrome b-245 light chain isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrom_B558a super family cl04901
Cytochrome Cytochrome b558 alpha-subunit; Cytochrome b-245 light chain (p22-phox) is one of ...
 2-126 5.24e-83

Cytochrome Cytochrome b558 alpha-subunit; Cytochrome b-245 light chain (p22-phox) is one of the key electron transfer elements of the NADPH oxidase in phagocytes.


The actual alignment was detected with superfamily member pfam05038:

Pssm-ID: 461532  Cd Length: 184  Bit Score: 244.34  E-value: 5.24e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547718   2 GQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRKKGSTMERWGQKHMTAVVKLFG 81
Cdd:pfam05038   1 GQIEWAMWANEQALASGLILLAGGIVGVAGQFKGWEFAAYAIAAGVFICLLEYPRGKRKKGTTMERCGQKYMTAVVKVFG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2462547718  82 PFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGIYLLSQV 126
Cdd:pfam05038  81 PLTRNYYVRAVLHAALAVPGGFLLATVLGTVCLGIASLIYLLAAI 125
 
Name Accession Description Interval E-value
Cytochrom_B558a pfam05038
Cytochrome Cytochrome b558 alpha-subunit; Cytochrome b-245 light chain (p22-phox) is one of ...
 2-126 5.24e-83

Cytochrome Cytochrome b558 alpha-subunit; Cytochrome b-245 light chain (p22-phox) is one of the key electron transfer elements of the NADPH oxidase in phagocytes.


Pssm-ID: 461532  Cd Length: 184  Bit Score: 244.34  E-value: 5.24e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547718   2 GQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRKKGSTMERWGQKHMTAVVKLFG 81
Cdd:pfam05038   1 GQIEWAMWANEQALASGLILLAGGIVGVAGQFKGWEFAAYAIAAGVFICLLEYPRGKRKKGTTMERCGQKYMTAVVKVFG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2462547718  82 PFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGIYLLSQV 126
Cdd:pfam05038  81 PLTRNYYVRAVLHAALAVPGGFLLATVLGTVCLGIASLIYLLAAI 125
 
Name Accession Description Interval E-value
Cytochrom_B558a pfam05038
Cytochrome Cytochrome b558 alpha-subunit; Cytochrome b-245 light chain (p22-phox) is one of ...
 2-126 5.24e-83

Cytochrome Cytochrome b558 alpha-subunit; Cytochrome b-245 light chain (p22-phox) is one of the key electron transfer elements of the NADPH oxidase in phagocytes.


Pssm-ID: 461532  Cd Length: 184  Bit Score: 244.34  E-value: 5.24e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547718   2 GQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRKKGSTMERWGQKHMTAVVKLFG 81
Cdd:pfam05038   1 GQIEWAMWANEQALASGLILLAGGIVGVAGQFKGWEFAAYAIAAGVFICLLEYPRGKRKKGTTMERCGQKYMTAVVKVFG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2462547718  82 PFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGIYLLSQV 126
Cdd:pfam05038  81 PLTRNYYVRAVLHAALAVPGGFLLATVLGTVCLGIASLIYLLAAI 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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