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Conserved domains on  [gi|2756268843|ref|XP_066167599|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6490 super family cl45474
Family of unknown function (DUF6490); This family of proteins is functionally uncharacterized. ...
 49-158 9.30e-35

Family of unknown function (DUF6490); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 119 and 168 amino acids in length.


The actual alignment was detected with superfamily member pfam20100:

Pssm-ID: 437932  Cd Length: 127  Bit Score: 118.32  E-value: 9.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2756268843  49 SWLTALGFGFLTFNSGMAIYRSDG-DRGSVAFVLTSYIDLVLLFACLRLFEKAPRDSARREWLKVFVWGLTTLLTVMFSY 127
Cdd:pfam20100  15 TLIAGAGLGLLTLNSGLAIYRARGdDPAAILFVAGSYATLLLLFRCLRAYELAAPGSPARERARRAVWPLTTLLTLAFAW 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2756268843 128 KVAAIMP-PVVAVIVWAMAFATIGGGFYAFFV 158
Cdd:pfam20100  95 KVAAVMPsAAAAAVVWALAVATTAGGFFALFV 126
 
Name Accession Description Interval E-value
DUF6490 pfam20100
Family of unknown function (DUF6490); This family of proteins is functionally uncharacterized. ...
 49-158 9.30e-35

Family of unknown function (DUF6490); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 119 and 168 amino acids in length.


Pssm-ID: 437932  Cd Length: 127  Bit Score: 118.32  E-value: 9.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2756268843  49 SWLTALGFGFLTFNSGMAIYRSDG-DRGSVAFVLTSYIDLVLLFACLRLFEKAPRDSARREWLKVFVWGLTTLLTVMFSY 127
Cdd:pfam20100  15 TLIAGAGLGLLTLNSGLAIYRARGdDPAAILFVAGSYATLLLLFRCLRAYELAAPGSPARERARRAVWPLTTLLTLAFAW 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2756268843 128 KVAAIMP-PVVAVIVWAMAFATIGGGFYAFFV 158
Cdd:pfam20100  95 KVAAVMPsAAAAAVVWALAVATTAGGFFALFV 126
PilO COG3167
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];
125-171 4.43e-03

Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];


Pssm-ID: 442400 [Multi-domain]  Cd Length: 202  Bit Score: 36.08  E-value: 4.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2756268843 125 FSYKVAAIMPPVVAVIVWAMAFATIGGGFYaFFVHQDKAAQLEQANR 171
Cdd:COG3167     8 LDLREIGSWPLPVKILLLLLLVLLVLALGY-FFLISPQLEELEELEA 53
 
Name Accession Description Interval E-value
DUF6490 pfam20100
Family of unknown function (DUF6490); This family of proteins is functionally uncharacterized. ...
 49-158 9.30e-35

Family of unknown function (DUF6490); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 119 and 168 amino acids in length.


Pssm-ID: 437932  Cd Length: 127  Bit Score: 118.32  E-value: 9.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2756268843  49 SWLTALGFGFLTFNSGMAIYRSDG-DRGSVAFVLTSYIDLVLLFACLRLFEKAPRDSARREWLKVFVWGLTTLLTVMFSY 127
Cdd:pfam20100  15 TLIAGAGLGLLTLNSGLAIYRARGdDPAAILFVAGSYATLLLLFRCLRAYELAAPGSPARERARRAVWPLTTLLTLAFAW 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2756268843 128 KVAAIMP-PVVAVIVWAMAFATIGGGFYAFFV 158
Cdd:pfam20100  95 KVAAVMPsAAAAAVVWALAVATTAGGFFALFV 126
PilO COG3167
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];
125-171 4.43e-03

Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];


Pssm-ID: 442400 [Multi-domain]  Cd Length: 202  Bit Score: 36.08  E-value: 4.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2756268843 125 FSYKVAAIMPPVVAVIVWAMAFATIGGGFYaFFVHQDKAAQLEQANR 171
Cdd:COG3167     8 LDLREIGSWPLPVKILLLLLLVLLVLALGY-FFLISPQLEELEELEA 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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