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Conserved domains on  [gi|67476737|ref|XP_653922|]
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40S ribosomal protein S15a, putative [Entamoeba histolytica HM-1:IMSS]

Protein Classification

uS8 family ribosomal protein( domain architecture ID 10015251)

uS8 family ribosomal protein is a component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell, such as mammalian 40S ribosomal protein S15a and fungal 40S ribosomal protein S22

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 6.33e-89

40S ribosomal protein S15A; Provisional


:

Pssm-ID: 185487  Cd Length: 130  Bit Score: 253.87  E-value: 6.33e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737    1 MVRVNVLADALKSITNAEKQGKRQVMIRPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLNGRLNKCAVISPRFN 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 67476737   81 VTLSEFDKWEANLLPSRHFGALVLTTSYGILDNTEARAKHTGGRILGFFY 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 6.33e-89

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 253.87  E-value: 6.33e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737    1 MVRVNVLADALKSITNAEKQGKRQVMIRPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLNGRLNKCAVISPRFN 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 67476737   81 VTLSEFDKWEANLLPSRHFGALVLTTSYGILDNTEARAKHTGGRILGFFY 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 5.59e-19

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 76.29  E-value: 5.59e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737     7 LADALKSITNAEKQGKRQVMIrPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLngRLNK-CAVISprfnvTLSE 85
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIK-----GLKR 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 67476737    86 FDK------WEANLLPSRH--FGALVLTTSYGILDNTEARAKHTGGRILGFFY 130
Cdd:pfam00410  75 ISKpglrvyVGKDELPRVLngLGIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 6.33e-89

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 253.87  E-value: 6.33e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737    1 MVRVNVLADALKSITNAEKQGKRQVMIRPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLNGRLNKCAVISPRFN 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 67476737   81 VTLSEFDKWEANLLPSRHFGALVLTTSYGILDNTEARAKHTGGRILGFFY 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-130 1.42e-71

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 209.85  E-value: 1.42e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737    1 MVRVNVLADALKSITNAEKQGKRQVMIRPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLNGRLNKCAVISPRFN 80
Cdd:PLN00146   1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 67476737   81 VTLSEFDKWEANLLPSRHFGALVLTTSYGILDNTEARAKHTGGRILGFFY 130
Cdd:PLN00146  81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
rps8p PRK04034
30S ribosomal protein S8P; Reviewed
 1-130 9.23e-55

30S ribosomal protein S8P; Reviewed


Pssm-ID: 179721  Cd Length: 130  Bit Score: 167.33  E-value: 9.23e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737    1 MVRVNVLADALKSITNAEKQGKRQVMIRPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLNGRLNKCAVISPRFN 80
Cdd:PRK04034   1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRYP 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 67476737   81 VTLSEFDKWEANLLPSRHFGALVLTTSYGILDNTEARAKHTGGRILGFFY 130
Cdd:PRK04034  81 VKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAYVY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 5.59e-19

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 76.29  E-value: 5.59e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737     7 LADALKSITNAEKQGKRQVMIrPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLngRLNK-CAVISprfnvTLSE 85
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIK-----GLKR 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 67476737    86 FDK------WEANLLPSRH--FGALVLTTSYGILDNTEARAKHTGGRILGFFY 130
Cdd:pfam00410  75 ISKpglrvyVGKDELPRVLngLGIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
rpsH PRK00136
30S ribosomal protein S8; Validated
 7-126 1.78e-09

30S ribosomal protein S8; Validated


Pssm-ID: 234658  Cd Length: 130  Bit Score: 51.98  E-value: 1.78e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737    7 LADALKSITNAEKQGKRQVMIrPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNL---NGRlnkcAVIS------- 76
Cdd:PRK00136   6 IADMLTRIRNAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLkygEGE----PVIEgikrvsk 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 67476737   77 ------------PRFnvtlsefdkweANLLpsrhfGALVLTTSYGILDNTEARAKHTGGRIL 126
Cdd:PRK00136  81 pglrvykkkdelPKV-----------LNGL-----GIAIVSTSKGVMTDREARKAGVGGEVL 126
rps8 CHL00042
ribosomal protein S8
 1-126 5.45e-04

ribosomal protein S8


Pssm-ID: 214344  Cd Length: 132  Bit Score: 37.46  E-value: 5.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 67476737    1 MVRvNVLADALKSITNAEKQGKRQVMIrPASKVICEFLNVMMKHQYITDytvVDTHRSGK---IVVNLNGRLNKcavISP 77
Cdd:CHL00042   1 MGN-DTIADMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIEN---VREHRENNkyfLVLTLKYRGNK---KKP 72

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 67476737   78 RFNvTLSEFDKweanllPSRH--------------FGALVLTTSYGILDNTEARAKHTGGRIL 126
Cdd:CHL00042  73 YIT-TLKRISK------PGLRiysnykeiprvlggMGIVILSTSKGIMTDREARLKGIGGEIL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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