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Conserved domains on  [gi|124378237|ref|YP_001029430|]
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GfV-D2-ORF1 [Ichnoviriform fumiferanae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
primase_Cterm super family cl36938
phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a ...
 557-679 1.62e-04

phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]


The actual alignment was detected with superfamily member TIGR01613:

Pssm-ID: 273716 [Multi-domain]  Cd Length: 304  Bit Score: 44.25  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124378237  557 GKSGKSTLTYLLHAVFGNYYLN---DSIIESLGKSN-----LENKRLFVADGSKKDKTLTGDFIKSIINSDYVTAEDTNC 628
Cdd:TIGR01613  85 GGNGKSTFQNLLSNLLGDYAITavaSLKMNELSEHRfglarLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNK 164

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 124378237  629 NTHSIFPiqAGLIIVSPKHDVLIcdtNDKD--LLNRIVTCPMRSRFVSKKKNG 679
Cdd:TIGR01613 165 DPFEFTP--KFTLVQSTNHLPRI---RGFDggIKRRLRIIPFTKVFPGEKKNK 212
 
Name Accession Description Interval E-value
primase_Cterm TIGR01613
phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a ...
 557-679 1.62e-04

phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273716 [Multi-domain]  Cd Length: 304  Bit Score: 44.25  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124378237  557 GKSGKSTLTYLLHAVFGNYYLN---DSIIESLGKSN-----LENKRLFVADGSKKDKTLTGDFIKSIINSDYVTAEDTNC 628
Cdd:TIGR01613  85 GGNGKSTFQNLLSNLLGDYAITavaSLKMNELSEHRfglarLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNK 164

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 124378237  629 NTHSIFPiqAGLIIVSPKHDVLIcdtNDKD--LLNRIVTCPMRSRFVSKKKNG 679
Cdd:TIGR01613 165 DPFEFTP--KFTLVQSTNHLPRI---RGFDggIKRRLRIIPFTKVFPGEKKNK 212
COG3378 COG3378
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];
491-624 1.91e-04

DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];


Pssm-ID: 442605 [Multi-domain]  Cd Length: 403  Bit Score: 44.55  E-value: 1.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124378237 491 EDLIKRTNGWTYDPDlshKYKKSVQSYFNKLLPKPCEQIWFL-SFIARMLNGKRSQEPCVILTDKrrGKSGKSTLTYLLH 569
Cdd:COG3378   90 EDYLTKVLPVEYDPD---AKCPRWLKFLDEIFPGDKELIDLLqEALGYCLTGRTSEQKFFFLYGP--GGNGKSTFLNLLT 164

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124378237 570 AVFG-NYYLNDSiIESLGKS-----NLENKRLFVADGSKKDKTLTGDFIKSIINSDYVTAE 624
Cdd:COG3378  165 ALLGkDNASSAS-LETLTENrfdlaRLKGKRLNIASELEEGYRLDESLLKALTGGDPITAR 224
 
Name Accession Description Interval E-value
primase_Cterm TIGR01613
phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a ...
 557-679 1.62e-04

phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273716 [Multi-domain]  Cd Length: 304  Bit Score: 44.25  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124378237  557 GKSGKSTLTYLLHAVFGNYYLN---DSIIESLGKSN-----LENKRLFVADGSKKDKTLTGDFIKSIINSDYVTAEDTNC 628
Cdd:TIGR01613  85 GGNGKSTFQNLLSNLLGDYAITavaSLKMNELSEHRfglarLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNK 164

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 124378237  629 NTHSIFPiqAGLIIVSPKHDVLIcdtNDKD--LLNRIVTCPMRSRFVSKKKNG 679
Cdd:TIGR01613 165 DPFEFTP--KFTLVQSTNHLPRI---RGFDggIKRRLRIIPFTKVFPGEKKNK 212
COG3378 COG3378
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];
491-624 1.91e-04

DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];


Pssm-ID: 442605 [Multi-domain]  Cd Length: 403  Bit Score: 44.55  E-value: 1.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124378237 491 EDLIKRTNGWTYDPDlshKYKKSVQSYFNKLLPKPCEQIWFL-SFIARMLNGKRSQEPCVILTDKrrGKSGKSTLTYLLH 569
Cdd:COG3378   90 EDYLTKVLPVEYDPD---AKCPRWLKFLDEIFPGDKELIDLLqEALGYCLTGRTSEQKFFFLYGP--GGNGKSTFLNLLT 164

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124378237 570 AVFG-NYYLNDSiIESLGKS-----NLENKRLFVADGSKKDKTLTGDFIKSIINSDYVTAE 624
Cdd:COG3378  165 ALLGkDNASSAS-LETLTENrfdlaRLKGKRLNIASELEEGYRLDESLLKALTGGDPITAR 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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