NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|171260068|ref|YP_001795381|]
View 

NADH dehydrogenase subunit 4 (mitochondrion) [Tetranychus urticae]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-384 3.91e-61

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 203.08  E-value: 3.91e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068   1 MSFMYMFLFSNNMILLFLVMFTYLIFLENFINCMMMFMTMIMMKMILFSVKEKMNNYFFFMKKKIIMLMMIMLLMFFYTK 80
Cdd:MTH00163  28 LFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSM 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  81 KMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFLNENTMLLIFF---------------- 144
Cdd:MTH00163 108 NLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFllnffgslnflwylsm 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 -LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNL-----NLIKKINFFFM-WTLMSIFFLSVSMIFL 217
Cdd:MTH00163 188 iLAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVmsffsKLGLKFNYIWIsISLVGGVIVSLICLRQ 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 218 MDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLILFMII 297
Cdd:MTH00163 268 VDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWW 347

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 298 FFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVLKNMGMSNMNK-FFKINQMKTKNLFLLKE 376
Cdd:MTH00163 348 FLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSgLYSCSSGKVREYLLLFL 427


                 ....*...
gi 171260068 377 HLMLLLFM 384
Cdd:MTH00163 428 HWLPLNLL 435
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-384 3.91e-61

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 203.08  E-value: 3.91e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068   1 MSFMYMFLFSNNMILLFLVMFTYLIFLENFINCMMMFMTMIMMKMILFSVKEKMNNYFFFMKKKIIMLMMIMLLMFFYTK 80
Cdd:MTH00163  28 LFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSM 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  81 KMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFLNENTMLLIFF---------------- 144
Cdd:MTH00163 108 NLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFllnffgslnflwylsm 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 -LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNL-----NLIKKINFFFM-WTLMSIFFLSVSMIFL 217
Cdd:MTH00163 188 iLAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVmsffsKLGLKFNYIWIsISLVGGVIVSLICLRQ 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 218 MDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLILFMII 297
Cdd:MTH00163 268 VDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWW 347

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 298 FFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVLKNMGMSNMNK-FFKINQMKTKNLFLLKE 376
Cdd:MTH00163 348 FLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSgLYSCSSGKVREYLLLFL 427


                 ....*...
gi 171260068 377 HLMLLLFM 384
Cdd:MTH00163 428 HWLPLNLL 435
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 139-280 6.37e-19

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 88.21  E-value: 6.37e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 139 MLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNL-------IKKINFFFMWTLMSIFFLS 211
Cdd:COG1008  211 LFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALplfpeasAYFAPLLAALGVIGIIYGA 290

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 171260068 212 VSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMM 280
Cdd:COG1008  291 LVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDI 359
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 139-317 4.90e-18

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 85.38  E-value: 4.90e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  139 MLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMM--NLNLIKKINFFFMWTLM-----SIFFLS 211
Cdd:TIGR01972 205 LFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLrfNLPLFPDASLYFAPVLAalgviAIIYGA 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  212 VSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNL 291
Cdd:TIGR01972 285 LIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMP 364

                         170       180
                  ....*....|....*....|....*.
gi 171260068  292 ILFMIIFFTLFVNMAMPPFMTFFSEM 317
Cdd:TIGR01972 365 VLAAFFMLFAMASLGLPGTSGFVGEF 390
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 110-327 3.25e-16

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 78.12  E-value: 3.25e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  110 LKASIYIFMFMGMSTFPMLVMFFF--LNENTMLLIF---FLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGG 184
Cdd:pfam00361  50 LFGISLMYNYTGTLSFDELSKALTggLNSSGLLLLFlliLVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGG 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  185 YGMMNLNLIKKI------NFFFMWTLMSIFFLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHA 258
Cdd:pfam00361 130 YGLIRRSLLYLPsspfiqQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHG 209

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  259 ISSSMMFYIIG-VIYEFTFSRMMMINKNFMINNLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYS 327
Cdd:pfam00361 210 LFSAGLFLCAGsVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-384 3.91e-61

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 203.08  E-value: 3.91e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068   1 MSFMYMFLFSNNMILLFLVMFTYLIFLENFINCMMMFMTMIMMKMILFSVKEKMNNYFFFMKKKIIMLMMIMLLMFFYTK 80
Cdd:MTH00163  28 LFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSM 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  81 KMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFLNENTMLLIFF---------------- 144
Cdd:MTH00163 108 NLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFllnffgslnflwylsm 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 -LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNL-----NLIKKINFFFM-WTLMSIFFLSVSMIFL 217
Cdd:MTH00163 188 iLAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVmsffsKLGLKFNYIWIsISLVGGVIVSLICLRQ 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 218 MDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLILFMII 297
Cdd:MTH00163 268 VDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWW 347

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 298 FFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVLKNMGMSNMNK-FFKINQMKTKNLFLLKE 376
Cdd:MTH00163 348 FLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSgLYSCSSGKVREYLLLFL 427


                 ....*...
gi 171260068 377 HLMLLLFM 384
Cdd:MTH00163 428 HWLPLNLL 435
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 3-366 3.27e-33

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 128.10  E-value: 3.27e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068   3 FMYMFLFSNNMILLFLVMFTYLIFLENFINCMMMFM----TMIMMKMILFSVKEKMNNYFFFMKKKIIMLMMIMLLMFFY 78
Cdd:MTH00094   1 LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFdsfvFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  79 TKKMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFF------------FLNENTMLLIFFLG 146
Cdd:MTH00094  81 SSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLknffffslcyfdFFLSWEMFFILSLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 147 FLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYG---MMNLNLIKKINFFFMWTLMSIFFLSVSMIFLMDLKMI 223
Cdd:MTH00094 161 FMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGflrILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 224 FAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLILFMIIFFTLFV 303
Cdd:MTH00094 241 AAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLS 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 171260068 304 NMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVLKNMGMSNMNKFFKINQM 366
Cdd:MTH00094 321 NSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNV 383
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 118-346 6.22e-29

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 116.48  E-value: 6.22e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 118 MFMGMSTfpmLVMFFFLNENTMLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIkkin 197
Cdd:MTH00150 136 SFMLLIS---SLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMV---- 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 198 FFFMWTLMSIFFLSVSM----------IFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYI 267
Cdd:MTH00150 209 FSLSSSSFSIFLISLSLwggvltslicLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCL 288

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 171260068 268 IGVIYEFTFSRMMMINKNFMINNLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNL 346
Cdd:MTH00150 289 ANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSL 367
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 5-346 6.44e-27

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 111.22  E-value: 6.44e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068   5 YMFLFSNNMILLFLVMFTYLIFLENFINCMMMFMTMIMMKMILFSVKEKMNNYFFFMKKKIIMLMMIMLLMFFYTKKMIN 84
Cdd:MTH00205  33 FFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVFKSNKNSKLFTVSVIMLLLILILSFSVDNLLL 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  85 FYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFLNENTMLLIFF-------------------- 144
Cdd:MTH00205 113 FYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFfnfplnfsdfylflywiflm 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYG------MMNLNLIKKINFFFMWTLMSIFFLSVSMIFLM 218
Cdd:MTH00205 193 LAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGliritsMLYKLNSNFSELFFSISLWGGVMTGMICLRQV 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 219 DLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLILFMIIF 298
Cdd:MTH00205 273 DLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWF 352

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 171260068 299 FTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNL 346
Cdd:MTH00205 353 LLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 76-362 8.20e-27

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 110.80  E-value: 8.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  76 FFYTKKMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFL--------------------N 135
Cdd:MTH00206 108 FFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFLqnslgslslyilyfsklttwN 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 136 ENTMLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIKKINFFFMWTLMSIF------F 209
Cdd:MTH00206 188 NNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILglwgsiM 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 210 LSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMIN 289
Cdd:MTH00206 268 TSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMI 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 171260068 290 NLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVLKNMGMSNMNKFFK 362
Cdd:MTH00206 348 LPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLL 420
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 77-366 7.17e-25

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 105.44  E-value: 7.17e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  77 FYTKKMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVM--------------FFFLNENTMLLI 142
Cdd:MTH00044 111 FSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISliaiyssssslsipLSELNWLTSLSS 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 143 F---------FLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIKKINFFFMWTLMSIFF---- 209
Cdd:MTH00044 191 NsssiwwifcILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINLFSLPSANNISFILIVFccwg 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 210 -LSVSMIFL--MDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNF 286
Cdd:MTH00044 271 aLITSIICLrqTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGF 350

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 287 MINNLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVLKNmgmSNMNKFFKINQM 366
Cdd:MTH00044 351 KLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSLLIYQL---TNSGSFPSWISN 427
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 109-334 1.44e-23

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 101.43  E-value: 1.44e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 109 RLKASIYIFMFMGMSTFPMLVMFFFLNENTMLLIFFL-----------------------GFLIKIPIMFFHLWLPKAHV 165
Cdd:MTH00124 142 RLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMlqlthptltnswtnlllwlaclmAFMVKMPLYGLHLWLPKAHV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 166 EANFYDSMILASLLLKLGGYGMMNLNLIkkinFFFMWTLMSIFFLSV--------SMIFL--MDLKMIFAYSSIIHMNGM 235
Cdd:MTH00124 222 EAPIAGSMVLAAILLKLGGYGIIRITLL----LPPLSNTLHYPFLTLalwgalmtSLICLrqTDLKSLIAYSSVSHMGLV 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 236 VMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFminNLILFMIIFFTLFV---NMAMPPFMT 312
Cdd:MTH00124 298 IAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGL---QLLLPLMTTWWLLAnltNMALPPTIN 374

                        250       260
                 ....*....|....*....|..
gi 171260068 313 FFSEMYMYMSLINYSKKMMIIL 334
Cdd:MTH00124 375 LMGELTIMTSLFNWSPTTIILT 396
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 77-333 3.79e-22

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 97.33  E-value: 3.79e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  77 FYTKKMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFLNENT----MLLIFF-------- 144
Cdd:MTH00127 111 FGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTgtlsMLTLQYsqplqlss 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 -----------LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLI------KKINFFFMWTLMSI 207
Cdd:MTH00127 191 wadklwwagclLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMldpltkELSYPFIILALWGI 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 208 FFLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFM 287
Cdd:MTH00127 271 IMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQ 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 171260068 288 INNLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMII 333
Cdd:MTH00127 351 MILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLAL 396
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 8-360 8.81e-22

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 96.35  E-value: 8.81e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068   8 LFSNNMILLFLVMFTYLIFLENFINCMMMFMTMIMMKMILFSVKEKMNNYFFFMKKKIIMLMMIMLLMFFYTKKMINFYI 87
Cdd:MTH00014  38 LLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASFKIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYI 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  88 YFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLV---MFFFLNENTMLLIF-----------------FLGF 147
Cdd:MTH00014 118 FFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMsilLIFYTNNSLSMLMSsmeppsiylmnlwwlitILAF 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 148 LIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIkkinFFFMWTLMSIFFLSVSM----------IFL 217
Cdd:MTH00014 198 MVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRMSSL----FMHINKSLSAPFSSISLvgavitslicIRQ 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 218 MDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLILFMII 297
Cdd:MTH00014 274 PDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWW 353

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 171260068 298 FFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVLKNMGMSNMNKF 360
Cdd:MTH00014 354 FLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSF 416
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 77-349 1.90e-21

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 95.37  E-value: 1.90e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  77 FYTKKMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLV--MFFFLNENTMLLIFF---------- 144
Cdd:MTH00068 110 FSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIalLILQNSLGSLSLILLelmspmqlmt 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 -----------LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLI------KKINFFFMWTLMSI 207
Cdd:MTH00068 190 ytnkiwwlaclLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISILltplskELSYPFIILALWGV 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 208 FFLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFM 287
Cdd:MTH00068 270 LMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQ 349

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 171260068 288 INNLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVL 349
Cdd:MTH00068 350 TILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMF 411
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 139-280 6.37e-19

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 88.21  E-value: 6.37e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 139 MLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNL-------IKKINFFFMWTLMSIFFLS 211
Cdd:COG1008  211 LFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALplfpeasAYFAPLLAALGVIGIIYGA 290

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 171260068 212 VSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMM 280
Cdd:COG1008  291 LVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDI 359
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 82-327 6.61e-19

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 88.19  E-value: 6.61e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  82 MINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFLNENT--------------------MLL 141
Cdd:MTH00217 131 LVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAgttdyqalcclkiekelqyfIFL 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 142 IFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLN--LIKKINFFF-----MWTLMSIFFLSVSM 214
Cdd:MTH00217 211 GFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSwpLLPEASEYFspliqTLSLLAIIYGSLTT 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 215 IFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLILF 294
Cdd:MTH00217 291 CRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFG 370

                        250       260       270
                 ....*....|....*....|....*....|...
gi 171260068 295 MIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYS 327
Cdd:MTH00217 371 ILMLLLVLANASIPLSCNFVGEFLSLLAAFEYS 403
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 139-317 4.90e-18

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 85.38  E-value: 4.90e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  139 MLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMM--NLNLIKKINFFFMWTLM-----SIFFLS 211
Cdd:TIGR01972 205 LFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLrfNLPLFPDASLYFAPVLAalgviAIIYGA 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  212 VSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNL 291
Cdd:TIGR01972 285 LIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMP 364

                         170       180
                  ....*....|....*....|....*.
gi 171260068  292 ILFMIIFFTLFVNMAMPPFMTFFSEM 317
Cdd:TIGR01972 365 VLAAFFMLFAMASLGLPGTSGFVGEF 390
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 85-346 9.49e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 84.59  E-value: 9.49e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  85 FYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFL-------------------NENTMLLIF-- 143
Cdd:MTH00226 156 FYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLynihgttdyltlascshvvSEQTQKWIFlg 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 144 -FLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNL----------NLIKKInffFMWTLMSIFFLSV 212
Cdd:MTH00226 236 iFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLswpilplgaqNLAPAV---IAMGIVGIVYGSF 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 213 SMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLI 292
Cdd:MTH00226 313 ATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPI 392

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 171260068 293 LFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNL 346
Cdd:MTH00226 393 WGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSF 446
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
139-278 1.34e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 83.98  E-value: 1.34e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 139 MLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLikkiNFFF-----------MWTLMSI 207
Cdd:PRK06473 207 LLAPILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGV----GLFPeawvylapwlaTWAVVSV 282

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 171260068 208 FFLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSR 278
Cdd:PRK06473 283 LYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSR 353
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 139-280 1.55e-17

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 84.10  E-value: 1.55e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 139 MLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIKKINFFFMWT-------LMSIFFLS 211
Cdd:PRK05846 213 LFLAFFIAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFApiiitlgVIAIIYGA 292

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 171260068 212 VSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMM 280
Cdd:PRK05846 293 LVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDI 361
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 77-349 3.26e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 82.63  E-value: 3.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  77 FYTKKMINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFLNENT----MLLIFF-------- 144
Cdd:MTH00110 110 FTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQNNLgslnFLLLQLwaqplpns 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 -----------LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLI-----KKINF-FFMWTLMSI 207
Cdd:MTH00110 190 wsnnllwlacmMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITIIlnpltEFMAYpFLMLSLWGM 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 208 FFLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFM 287
Cdd:MTH00110 270 IMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQ 349

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 171260068 288 InnLILFMIIFFTL--FVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNLMVL 349
Cdd:MTH00110 350 T--LLPLMATWWLLasLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNMLITALYSLYML 411
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 85-346 3.87e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 82.80  E-value: 3.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  85 FYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMSTFPMLVMFFFLNENT--------------------MLLIFF 144
Cdd:MTH00204 137 FYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITgttdyqillniklplsiqkwLLVGFF 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLN--LIKKINFFF-----MWTLMSIFFLSVSMIFL 217
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSwpLFPAASEYFaplivMLSVIAVIYGSLTTCRQ 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 218 MDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLILFMII 297
Cdd:MTH00204 297 VDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIM 376

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 171260068 298 FFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLLVSVMFNL 346
Cdd:MTH00204 377 LVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSL 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 110-327 3.25e-16

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 78.12  E-value: 3.25e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  110 LKASIYIFMFMGMSTFPMLVMFFF--LNENTMLLIF---FLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGG 184
Cdd:pfam00361  50 LFGISLMYNYTGTLSFDELSKALTggLNSSGLLLLFlliLVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGG 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  185 YGMMNLNLIKKI------NFFFMWTLMSIFFLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHA 258
Cdd:pfam00361 130 YGLIRRSLLYLPsspfiqQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHG 209

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  259 ISSSMMFYIIG-VIYEFTFSRMMMINKNFMINNLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYS 327
Cdd:pfam00361 210 LFSAGLFLCAGsVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 141-352 4.39e-15

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 76.61  E-value: 4.39e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 141 LIFFLGFLI----KIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGM--MNLNLIKKINFFFMWTLM-----SIFF 209
Cdd:PRK12561 185 LLLYAGFLIafgvKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALirFNVQMLPDAHVYFAPALAilgvvNIIY 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 210 LSVSMIFLMDLKMIFAYSSIIHMnGMVmmLLSNNFFTEKMF---VIMMISHAISSSMMFYIIGVIYEFTfsRMMMINKnf 286
Cdd:PRK12561 265 GALNAFAQDNVKRRLAYSSVSHM-GFV--LLGIAAFTDLGIsgaMLQMISHGLIAAALFFLTGVTYERT--HTLSIPN-- 337

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 171260068 287 mINNLILFMIIFFTLFV-----NMAMPPFMTFFSEMYMYMSLIN---YSKKMMIILIYMLLVSVMFNLMVLKNM 352
Cdd:PRK12561 338 -MGGLAKVMPKTFALFTassmaSLALPGMSGFVSELTVFLGITSsdvYSSTFRTITILLAAVGLILTPIYLLSM 410
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 140-343 1.75e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 68.25  E-value: 1.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 140 LLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMM-------NLNLIKKINFFFMWT-LMSIFFLS 211
Cdd:COG0651  208 FALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILrvltllfGADPALFLGTLLLVLgLLTMLVGA 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 212 VSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNfMINNL 291
Cdd:COG0651  288 LGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGG-LGKRM 366

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 171260068 292 ILFMIIFFTLFVNMA-MPPFMTFFSEMYMYMSLINYSkkMMIILIYMLLVSVM 343
Cdd:COG0651  367 PLTAAAFLIGALALAgLPPLSGFVSKWLLLQAALEAG--AWLLAAVLLLSSLL 417
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
139-271 1.65e-11

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 65.50  E-value: 1.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 139 MLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIKkinFFFMWTL----------MSIF 208
Cdd:PRK07363 207 LLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQL---FPQTWSLvapglaiigtISVI 283

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 171260068 209 FLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVI 271
Cdd:PRK07363 284 YGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIV 346
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 141-280 6.61e-10

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 60.49  E-value: 6.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 141 LIFFLGFLI----KIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGM--MNLNLIKKINFFFMWTLM-----SIFF 209
Cdd:PRK02546 213 LLCYAGLLIaygvKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALlrMNAGMLPDAHAQFAPLLIvlgvvNIIY 292

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 171260068 210 LSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMM 280
Cdd:PRK02546 293 AALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLML 363
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 140-347 3.41e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 58.44  E-value: 3.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 140 LLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMM---------NLNLIKKINFF----FMWTLMS 206
Cdd:PRK12667 226 LALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIrflytifgiSPSLIDFRAALspilIILGAVS 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 207 IFFLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMM-----M 281
Cdd:PRK12667 306 AIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIdelagL 385

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 171260068 282 INKNFMINnlILFMIIFFTLfvnMAMPPFMTFFSEMYMYMSLINYSkkmMIILIYMLLVSVMFNLM 347
Cdd:PRK12667 386 GRKMPIAS--FAFLIGALSL---VGIPPLNGFFSKLLLFNALLESG---FYLPALVLLIASAISLV 443
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 137-342 5.97e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.50  E-value: 5.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 137 NTMLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNL---------IKKINFFFMWT-LMS 206
Cdd:PRK08375 202 VTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfggdfrfALGLGWLLAVLaLLS 281

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 207 IFFLSVSMIFLMDLKMIFAYSSIihmNGMVMMLLSNNFFTEKMF---VIMMISHAISSSMMFYIIGVIYEFTFSRMMMIN 283
Cdd:PRK08375 282 MLVGSLAALGQDDVKRVLAYSTV---SQMGYILLGLALLTPLALaagLLHLLHHALMKGALFLAAGAIEVTYGTRRLSEL 358

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 171260068 284 KNFMINNLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLInySKKMMIILIYMLLVSV 342
Cdd:PRK08375 359 SGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAV--EAGQWLVLAVLLASSL 415
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 141-353 1.44e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.22  E-value: 1.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 141 LIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIKK--------INFFFMWTLMSIFFLSV 212
Cdd:PRK08676 210 LFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRqsgaaeqfSNVLIGLGIFSIAVAAF 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 213 SMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIY-EFTFSRMMMINKNFMINNL 291
Cdd:PRK08676 290 SMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHrQYRSDRFDRIFDVFRLQPV 369

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 171260068 292 ILFMIIFFTLFVnMAMPPFMTFFSEMYMYMSLINYSKKM-MIILIYMLLVSVMFNLMVLKNMG 353
Cdd:PRK08676 370 AAWGVILGSAAI-IGMPPFPLFLSKFFILLQLGGISVWLvLAVLLLLLLAASSFAIFLLKAFT 431
ndhD CHL00011
NADH dehydrogenase subunit 4
 141-273 1.45e-07

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 53.03  E-value: 1.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 141 LIFFLGFLI----KIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGM--MNLNLIKKINFFFMWTLM-----SIFF 209
Cdd:CHL00011 211 ILFYIGFLIayavKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLirINMELLPHAHSIFSPWLVivgaiQIIY 290

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 171260068 210 LSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYE 273
Cdd:CHL00011 291 AASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYD 354
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 137-339 2.44e-06

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 49.15  E-value: 2.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 137 NTMLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIKKINFF----FMWTLMSIFFLSV 212
Cdd:MTH00062 165 LIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSFlgylFLCCLFSVFFLIT 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 213 SMIFLmDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNFMINNLI 292
Cdd:MTH00062 245 ACSEL-DGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLV 323

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 171260068 293 LFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINYSKKMMIILIYMLL 339
Cdd:MTH00062 324 LRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFWCFYLFF 370
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 144-348 2.91e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.16  E-value: 2.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 144 FLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLI--KKINFFFMWTLMSIFFLS---VSMIFLM 218
Cdd:PRK06458 221 LIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILidAAIGSDFPGRLLLIFGLLsvlVAAFFLL 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 219 ---DLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMM-INKNFMINNLILF 294
Cdd:PRK06458 301 rqrDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINvIRGLLKVSPLTGW 380

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 171260068 295 MIIFFTLFVnMAMPPFMTFFSEMYMYMSLIN--YSKKMMIILIYMLLVSVMFNLMV 348
Cdd:PRK06458 381 GLMLGALAI-AGMPPFGVFISEFLILTAGLArgPLLIAILLLLLLTLAFAALVRRV 435
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-277 3.98e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.41  E-value: 3.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 144 FLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLNLIkkinFFFMWTLMSIF------FLSVSMIFL 217
Cdd:PRK07234 191 ALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALD----VPGLDLIVRIFgvgtalLGVLFALLE 266

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 218 MDLKMIFAYSSIIHMNGMVMMLLSNNFFTekmfvimmISHAISSSMMFYIIGVIYEFTFS 277
Cdd:PRK07234 267 KDLKRMLAFSTISQLGFILAAPLVGGLYA--------LAHGLVKSTLFLCAGALPSRNFT 318
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 82-343 1.07e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.34  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068  82 MINFYIYFELISLMIFSLIFFSSFSNQRLKASIYIFMFMGMST---FPMLVMFFFLNENTML--------------LIFF 144
Cdd:PRK08667 133 TFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTvflMLGIIVLFIQTGSFELsplgasagilslvfLLLF 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 145 LGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNLnLIKKINFFFMWTLMSIFFLSVSMIFLM------ 218
Cdd:PRK08667 213 LGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRF-LMDVLSPELWWGVLILLAGSISALLGViyalke 291

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 219 -DLKMIFAYSSI----IHMNGMVMMLLSNNFFTEKMFVIMM-------ISHAISSSMMFYIIGVIYEFTFSRMMMINKNF 286
Cdd:PRK08667 292 hDLKGLLAYSSIenigIILMGIGLYVIFGVYGLDTLALLALggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGL 371

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 171260068 287 MINNLILFMIIFFTLFVNMAMPPFMTFFSEMYMYMSLINySKKMMIILIYMLLVSVM 343
Cdd:PRK08667 372 VKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQ-SFSVADPLIKILLFSVL 427
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 140-324 8.02e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 8.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 140 LLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGGYGMMNL-NLIKKINFFFM----------WTLMSIF 208
Cdd:PRK12662 212 VLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIvYDVFKANFVFTtlpfnnvfmiLAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 209 FLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNNFFTEKMFVIMMISHAISSSMMFYIIGVIyEFTFSRMMMINKNFMI 288
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSI-SYHFGTTKLEDCLNLW 370

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 171260068 289 NNLILFMIIFFTLFVNM-AMPPFMTFFSEMYMYMSLI 324
Cdd:PRK12662 371 KSMPKITLAFVLLSLSLiGMPPTSGFVAKWYILDAFI 407
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 127-348 2.18e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 39.81  E-value: 2.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 127 MLVMFFFLNENTMLLIFFLGFLIKIPIMFFHLWLPKAHVEANFYDSMILASLLLKLGgygMMNLNLIKKINFFFMWTLMS 206
Cdd:MTH00160  77 LNMLNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIILS 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 207 IFFLSVSMIFLMDLKMIFAYSSIIHMNGMVMMLLSNnfftEKMFVIMMISHAISSSMMFYIIGVIYEFTFSRMMMINKNF 286
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMIS----ENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKS 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171260068 287 MINNLILFMIIF--------------------------------------FTLFVNMAMPPFMTFFSEMYMYMSLINYSK 328
Cdd:MTH00160 230 KKIKFLLFLNLLslgglppflgflpkwiiiqllisnnmffllfilimsslITLYFYLRISYSSLMLNYNKNKWNLKKKKN 309

                        250       260
                 ....*....|....*....|
gi 171260068 329 KMMIILIYMLLVSVMFNLMV 348
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILS 329
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH