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Conserved domains on  [gi|226968611|ref|YP_002808561|]
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NADH dehydrogenase subunit 5 (mitochondrion) [Panonychus ulmi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 43-507 5.46e-65

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 220.78  E-value: 5.46e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  43 SNINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFF 122
Cdd:MTH00165  44 SSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYC 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 123 LIFFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNF---------------MEINWLFFFSLMTKSAQYPFMAWL 187
Cdd:MTH00165 124 LVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFGSWnfifyldfmknsfemLLIGLLIMLAAMTKSAQIPFSSWL 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 188 PMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMM 267
Cdd:MTH00165 204 PAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 268 FMILLNMKFLTFFYLCNHAFFKSLMFINMGMKMMKNFSNQ-FNFNMNNLNLDLIYNISFMISCFNLMNIAFFSSFFIKEM 346
Cdd:MTH00165 284 SILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQdIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDL 363

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 347 MVNMMNFNMNNMYMYIFFFMSSFFTMQYALKLILYGYKLNFKIKFYINFFvkkSNFSFLLMNLISLFYMKMMY-NFFLFE 425
Cdd:MTH00165 364 ILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLS---DESKFMLKSMILLLFMSIFGgSMLSWL 440

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 426 IKHSLIIINIYLFMLMMNFYFLNFSNKFISMLMYLNIMIYIKPMYFMKMDILMIEMWMENLTLNFFSKLKSFNFFNINFK 505
Cdd:MTH00165 441 IFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520


                 ..
gi 226968611 506 TL 507
Cdd:MTH00165 521 SF 522
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 43-507 5.46e-65

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 220.78  E-value: 5.46e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  43 SNINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFF 122
Cdd:MTH00165  44 SSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYC 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 123 LIFFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNF---------------MEINWLFFFSLMTKSAQYPFMAWL 187
Cdd:MTH00165 124 LVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFGSWnfifyldfmknsfemLLIGLLIMLAAMTKSAQIPFSSWL 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 188 PMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMM 267
Cdd:MTH00165 204 PAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 268 FMILLNMKFLTFFYLCNHAFFKSLMFINMGMKMMKNFSNQ-FNFNMNNLNLDLIYNISFMISCFNLMNIAFFSSFFIKEM 346
Cdd:MTH00165 284 SILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQdIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDL 363

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 347 MVNMMNFNMNNMYMYIFFFMSSFFTMQYALKLILYGYKLNFKIKFYINFFvkkSNFSFLLMNLISLFYMKMMY-NFFLFE 425
Cdd:MTH00165 364 ILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLS---DESKFMLKSMILLLFMSIFGgSMLSWL 440

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 426 IKHSLIIINIYLFMLMMNFYFLNFSNKFISMLMYLNIMIYIKPMYFMKMDILMIEMWMENLTLNFFSKLKSFNFFNINFK 505
Cdd:MTH00165 441 IFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520


                 ..
gi 226968611 506 TL 507
Cdd:MTH00165 521 SF 522
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 96-293 2.55e-36

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 142.21  E-value: 2.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGD-CMIIISMLNFMLMN--NFMEIN---- 167
Cdd:COG1009  123 AMLGLVLSDNLLLLFVFWELVGLCSYLLIgFWYEKPSARRAARKAFLVTRVGDlGLLLGILLLGAIAGtlNFSELLaaap 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 168 ------------WLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFFFLNFC 234
Cdd:COG1009  203 tilssplltlilLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARlSPLFALSPVWLTVVAIIG 282

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 226968611 235 LMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMF 293
Cdd:COG1009  283 AITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLF 341
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 96-297 1.05e-26

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 113.92  E-value: 1.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611   96 SMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSW-KSAIKTFLNNKFGDCMIIISMlnFMLMNNFMEINW------ 168
Cdd:TIGR01974 126 SMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSAnNAAIKAFVVNRVGDFGLLLGI--FLIFWYFGTLNFqevfal 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  169 --------------LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFFFLNF 233
Cdd:TIGR01974 204 apgaffsaltliclLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARtSPLFELSPTALYLVTII 283

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 226968611  234 CLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:TIGR01974 284 GAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAG 347
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 103-344 4.19e-14

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 72.73  E-value: 4.19e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  103 SMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISM----------------LNFMLMNNFME 165
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGIslmynytgtlsfdelsKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  166 INWLFFF---SLMTKSAQYPFMAWLPMA-MSAPTPISAMVhSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFCL--MSMF 239
Cdd:pfam00361  81 LLLLFLLilvGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSPFIQQILLILaiISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  240 FSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKF---LTFFYLCNHAFFKSLMFI---NMGMKMMKnfSNQFNFNMN 313
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLcagSVIYRRVH--TRNIRDYGG 237

                         250       260       270
                  ....*....|....*....|....*....|.
gi 226968611  314 NLNLDLIYNISFMISCFNLMNIAFFSSFFIK 344
Cdd:pfam00361 238 LAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 43-507 5.46e-65

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 220.78  E-value: 5.46e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  43 SNINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFF 122
Cdd:MTH00165  44 SSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYC 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 123 LIFFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNF---------------MEINWLFFFSLMTKSAQYPFMAWL 187
Cdd:MTH00165 124 LVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFGSWnfifyldfmknsfemLLIGLLIMLAAMTKSAQIPFSSWL 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 188 PMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMM 267
Cdd:MTH00165 204 PAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 268 FMILLNMKFLTFFYLCNHAFFKSLMFINMGMKMMKNFSNQ-FNFNMNNLNLDLIYNISFMISCFNLMNIAFFSSFFIKEM 346
Cdd:MTH00165 284 SILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQdIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDL 363

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 347 MVNMMNFNMNNMYMYIFFFMSSFFTMQYALKLILYGYKLNFKIKFYINFFvkkSNFSFLLMNLISLFYMKMMY-NFFLFE 425
Cdd:MTH00165 364 ILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLS---DESKFMLKSMILLLFMSIFGgSMLSWL 440

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 426 IKHSLIIINIYLFMLMMNFYFLNFSNKFISMLMYLNIMIYIKPMYFMKMDILMIEMWMENLTLNFFSKLKSFNFFNINFK 505
Cdd:MTH00165 441 IFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520


                 ..
gi 226968611 506 TL 507
Cdd:MTH00165 521 SF 522
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 45-517 1.48e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 161.62  E-value: 1.48e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  45 INFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFLI 124
Cdd:MTH00095  37 LSLKFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLV 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 125 FFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNFMEINWLFFFSL--------MTKSAQYPFMAWLPMAMSAPTP 196
Cdd:MTH00095 117 LFYNNWDSNSGAMNTALTNRIGDFFIFLFFSGFIFSSYYFFSFSFFSSSMilmllltsFTKSAQFPFSSWLPKAMSAPTP 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 197 ISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKF 276
Cdd:MTH00095 197 VSSLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSF 276

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 277 LTFFYLCNHAFFKSLMFINMGMKMMKNF-SNQFNFNMNNLNLDLIYNISFMISCFNLMNIAFFSSFFIKEMMVNMMNFNM 355
Cdd:MTH00095 277 VSFIHLLSHALFKSCLFMQVGYLIHSNFgQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNN 356

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 356 NNMYMYIFFFMSSFFTMQYALKLIlYGYKLNFKIKFYINFFVKKSNFSFLLMNLIS----------LFYMKMMYNFFLFE 425
Cdd:MTH00095 357 YMIFFSLMFFFSVFLTFGYSYRLW-KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSvfflwwlnfnLLNLPSLFLYLDFY 435

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 426 IKHSLIIINIYLFMLMMNFYFLNFSNKFisMLMYLNIMIYIKPMYFMKMDILMIEMWMENLTLNFFSKLKSFNFFNINFK 505
Cdd:MTH00095 436 VPLFYLFMIMLFSFFFFKLLFKELKYKF--FVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSFFFFSYMKSFKY 513

                        490
                 ....*....|..
gi 226968611 506 TLLIMMLYIMLI 517
Cdd:MTH00095 514 NSLLILLFLIFL 525
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 43-517 2.20e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 150.76  E-value: 2.20e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  43 SNINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFF 122
Cdd:MTH00151  44 CSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMWLVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFA 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 123 LIFFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFML-----------MNNFMEINWLFFFSLMTKSAQYPFMAWLPMAM 191
Cdd:MTH00151 124 LVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLlghwsilsmwdFKLSGWLGLLLVLAAMTKSAQIPFSSWLPAAM 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 192 SAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFC-LMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMI 270
Cdd:MTH00151 204 AAPTPVSALVHSSTLVTAGVFLLIRFFPFLSSSSGFSSFLLFIsLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSL 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 271 LLNMKFLTFFYLCNHAFFKSLMFINMGMKMMKNFSNQFNFNMNNLNLDL-IYNISFMISCFNLMNIAFFSSFFIKEMMVN 349
Cdd:MTH00151 284 GLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLpLTSGCLNISSLSLCGAPFLSGFYSKDLILE 363

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 350 MMNFNMNNMYMYIFFFMSSFFTMQYALKLILYGYKLNFKIKFYINF--FVKKSNFSFLLMNLISLFYMKMMYNFFL---- 423
Cdd:MTH00151 364 SSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKsdEDFYVSLPMLLLSLGALIGGKLLQSLFEgfse 443

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 424 ---FEIKHSLIIINIYLFMLMMNFYFL---------NFSNKFISMLMYLNIMIYIKPMYFMKMDILMIEMWME------- 484
Cdd:MTH00151 444 effLPSYLKLLIGFVILLGLFLSFGFWdsgfssskmVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDmgwleil 523

                        490       500       510
                 ....*....|....*....|....*....|....*....
gi 226968611 485 ------NLTLNFFSKLKSFNFFNINFKTLLIMMLYIMLI 517
Cdd:MTH00151 524 ggqgvfKANKSFSVLNESWPVKWFNFFIGLILLLVLFLV 562
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 96-293 2.55e-36

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 142.21  E-value: 2.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGD-CMIIISMLNFMLMN--NFMEIN---- 167
Cdd:COG1009  123 AMLGLVLSDNLLLLFVFWELVGLCSYLLIgFWYEKPSARRAARKAFLVTRVGDlGLLLGILLLGAIAGtlNFSELLaaap 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 168 ------------WLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFFFLNFC 234
Cdd:COG1009  203 tilssplltlilLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARlSPLFALSPVWLTVVAIIG 282

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 226968611 235 LMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMF 293
Cdd:COG1009  283 AITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLF 341
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 43-297 4.65e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 132.58  E-value: 4.65e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  43 SNINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFF 122
Cdd:MTH00207  47 SPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKFLSRFISLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFI 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 123 LIFFYNNNDSWKSAIKTFLNNKFGDCMIIISM-----------LNFMLMNNFMEINWLFFFSLMTKSAQYPFMAWLPMAM 191
Cdd:MTH00207 127 LVIYYQNPKSLGAGMITALTNRIGDVMLLLSIgwtlnqghwsiTNMWQTDMNNYIALSIMIAAMTKSAQMPFSSWLPAAM 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 192 SAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMI 270
Cdd:MTH00207 207 AAPTPVSALVHSSTLVTAGVFLLIRfYPFLSSTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASL 286

                        250       260
                 ....*....|....*....|....*..
gi 226968611 271 LLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:MTH00207 287 GLGMPKLALFHLITHALFKALLFVCAG 313
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 43-294 1.72e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 131.23  E-value: 1.72e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  43 SNINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFF 122
Cdd:MTH00211  69 FSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFL 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 123 LI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNFMEINWLFFFSL-------------MTKSAQYPFMAWLP 188
Cdd:MTH00211 149 LIsWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWLLLNLNSWEISQLFILNLdltlfllglllaaMGKSAQFGFHPWLP 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 189 MAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFC-LMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMM 267
Cdd:MTH00211 229 SAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQLILGAVLLLgALTMLFGALCALTQNDIKKIVAFSTTSQLGLMM 308

                        250       260
                 ....*....|....*....|....*..
gi 226968611 268 FMILLNMKFLTFFYLCNHAFFKSLMFI 294
Cdd:MTH00211 309 VTLGLNQPQLAFLHICTHAFFKAMLFM 335
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 44-297 1.20e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 128.22  E-value: 1.20e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  44 NINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFL 123
Cdd:MTH00209  43 SISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 124 IFFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNF------------MEINWLFFFSLMTKSAQYPFMAWLPMAM 191
Cdd:MTH00209 123 VIYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHGNWnifylnfnsnlgSVISVLIVLAAMTKSAQIPFSAWLPAAM 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 192 SAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMI 270
Cdd:MTH00209 203 AAPTPVSALVHSSTLVTAGVYLLIRfFPSLFSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSL 282

                        250       260
                 ....*....|....*....|....*..
gi 226968611 271 LLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:MTH00209 283 GLNQPELAFFHLITHALFKALLFICAG 309
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 96-297 1.05e-26

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 113.92  E-value: 1.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611   96 SMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSW-KSAIKTFLNNKFGDCMIIISMlnFMLMNNFMEINW------ 168
Cdd:TIGR01974 126 SMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSAnNAAIKAFVVNRVGDFGLLLGI--FLIFWYFGTLNFqevfal 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  169 --------------LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFFFLNF 233
Cdd:TIGR01974 204 apgaffsaltliclLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARtSPLFELSPTALYLVTII 283

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 226968611  234 CLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:TIGR01974 284 GAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAG 347
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 96-293 1.60e-26

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 113.33  E-value: 1.60e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWKSA-IKTFLNNKFGD-CMIIISMLNFMLM------------N 161
Cdd:PRK06590 127 SMLMLVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKPSAGAAaMKAFIVNRVGDvGLALGIFLLFAEFgslnydevfaaaP 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 162 NFMEINW--------LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFFFLN 232
Cdd:PRK06590 207 QFFGLGWsaltliclLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARmSPLFELSPEALLFVAI 286

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 226968611 233 FCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMF 293
Cdd:PRK06590 287 VGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLF 347
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 96-297 3.35e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 111.89  E-value: 3.35e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWKSAIKTFLNNKFGD-CMIIISMLNFMLMNNFMEINWLFFFSL 174
Cdd:MTH00063  88 VMGILVLTGDFLSTLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDvCLFLLIGLSCWGGSGSFLCCLFFFLIV 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 175 MTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKM 254
Cdd:MTH00063 168 FTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKI 247

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 226968611 255 IALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:MTH00063 248 VALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVG 290
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 44-293 3.81e-26

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 112.18  E-value: 3.81e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  44 NINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFL 123
Cdd:MTH00004  75 NIPISFKLDQYSLMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIGWEGVGIMSFLL 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 124 I-FFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNFMEINWLFFFSLMT-------------KSAQYPFMAWLPM 189
Cdd:MTH00004 155 IgWWSGRAEANTAALQAIIYNRIGDIGLILSMAWLAMTLNTWEIQQLFSPTQTPtlpllglilaatgKSAQFGLHPWLPA 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 190 AMSAPTPISAMVHSSTLVTAGLYILFRyfnFFFFFFNSFFFLNFCL----MSMFFSSLKAMVEKDIKKMIALSTLSQIGL 265
Cdd:MTH00004 235 AMEGPTPVSALLHSSTMVVAGIFLLIR---THPLLQNNQTALTICLclgaLTTLFAATCALTQNDIKKIIAFSTSSQLGL 311

                        250       260
                 ....*....|....*....|....*...
gi 226968611 266 MMFMILLNMKFLTFFYLCNHAFFKSLMF 293
Cdd:MTH00004 312 MMVTIGLNQPQLAFLHISTHAFFKAMLF 339
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 41-293 1.70e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 110.38  E-value: 1.70e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  41 LYSNINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSS 120
Cdd:MTH00066  70 FNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWEGVGIMS 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 121 FFLIFFYN-NNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNFMEINWLFFFSL-------------MTKSAQYPFMAW 186
Cdd:MTH00066 150 FLLIGWWHaRADANTAALQAVLYNRVGDIGLILSMAWLAMNTNSWELQQIFLLNDnstlpllglilaaAGKSAQFGLHPW 229

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 187 LPMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFlnfCL----MSMFFSSLKAMVEKDIKKMIALSTLSQ 262
Cdd:MTH00066 230 LPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTI---CLclgaLTTLFTAACALTQNDIKKIVAFSTSSQ 306

                        250       260       270
                 ....*....|....*....|....*....|.
gi 226968611 263 IGLMMFMILLNMKFLTFFYLCNHAFFKSLMF 293
Cdd:MTH00066 307 LGLMMVTIGLNQPQLAFFHICTHAFFKAMLF 337
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 95-294 1.76e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 110.31  E-value: 1.76e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  95 MSMIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISMLnFMLMN-NFMEINWLFFF 172
Cdd:MTH00137 130 IAMIILVTANNMFQLFIGWEGVGIMSFLLIgWWYGRADANTAALQAVIYNRVGDIGLILAMA-WMATNlNSWEIQQIFAL 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 173 SL---MT------------KSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRyfnFFFFFFNSFFFLNFCL-- 235
Cdd:MTH00137 209 SKdfdLTlpllglilaatgKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIR---LSPLMENNQTALTTCLcl 285

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 226968611 236 --MSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFI 294
Cdd:MTH00137 286 gaLTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFL 346
PRK12646 PRK12646
DUF4040 family protein;
44-345 7.64e-25

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 108.69  E-value: 7.64e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  44 NINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIM-SMIMLILSMNILVMIFGWELLGLSSFF 122
Cdd:PRK12646  69 DINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLSSRKDNLPRFYFYLTLFMfSMIGIVLSDNTILMYVFWELTSVSSFL 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 123 LI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNN-------------------FMEINWLFFFSLMTKSAQYP 182
Cdd:PRK12646 149 LIsYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGtnniteilgqadhiknhglFIPMIFMFLLGAFTKSAQFP 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 183 FMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFC-LMSMFFSSLKAMVEKDIKKMIALSTLS 261
Cdd:PRK12646 229 FHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTFVgLITMLFGSITALKQWDLKGILAYSTIS 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 262 QIGLMMFMILLN-----------------MKFLTFFYLCNHAFFKSLMFINMGMKMMKNFSNQFNFNMNNLNLDLIYNIS 324
Cdd:PRK12646 309 QLGMIMAMVGIGggyaqhqqdaiasiyvfVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLV 388

                        330       340
                 ....*....|....*....|.
gi 226968611 325 FMISCFNLMNIAFFSSFFIKE 345
Cdd:PRK12646 389 MTIAALSMAGVPFLNGFLSKE 409
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 97-297 8.68e-25

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 108.24  E-value: 8.68e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  97 MIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISML---------------NFMLM 160
Cdd:MTH00020 124 MVVLVTSDNYLQLFIGWEGVGLCSYLLInFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFllwdrfgsldfssvfNMVVS 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 161 NNFMEINW---LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYF-NFFFFFFNSFFFLNFCLM 236
Cdd:MTH00020 204 APSSDITLiclFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSpLFEQAPLALIIVTIVGSL 283

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 226968611 237 SMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:MTH00020 284 TVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAG 344
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 44-297 5.43e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 105.82  E-value: 5.43e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  44 NINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFL 123
Cdd:MTH00208  98 NFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLL 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 124 IFFYNN-NDSWKSAIKTFLNNKFGDCMIIISM--------------LNFMLMNNFMEINWLFFFSL---MTKSAQYPFMA 185
Cdd:MTH00208 178 ISWWTTrNDANSSALQAVIYNRIGDIGIILFLslslinfnswnlneILSLNNSNSFLINILLFGILlaaAGKSAQFGLHP 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 186 WLPMAMSAPTPISAMVHSSTLVTAGLYILFRyfnFFFFFFNSFFFLNFCL----MSMFFSSLKAMVEKDIKKMIALSTLS 261
Cdd:MTH00208 258 WLPAAMEGPTPVSALLHSSTMVVAGVFLLIR---TSPLISNSPWFLSLCLilgsLTALFAASTAISQHDIKKIIAYSTTS 334

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 226968611 262 QIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:MTH00208 335 QLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSG 370
PRK12650 PRK12650
DUF4040 family protein;
96-297 1.18e-23

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 105.12  E-value: 1.18e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLIffynnNDSWKS----AIKTFLNNKFGDCMIIISM-----------LNFMLM 160
Cdd:PRK12650 122 AMLLLVLADDVVVLFVAWELVSLASFFLI-----ARSGSGgeagSIRTLILTFFGGLTLLAAVaiaatqtgttsLSGILH 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 161 NNFME--------INWLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLN 232
Cdd:PRK12650 197 SDVWAekpglttvVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWNWLLI 276

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 226968611 233 FCLM-SMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKF-LT--FFYLCNHAFFKSLMFINMG 297
Cdd:PRK12650 277 IVGMiTALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFaLTaaVVHTLAHALFKSSLFMLIG 345
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
96-297 3.79e-23

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 103.18  E-value: 3.79e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNN---FMEI----- 166
Cdd:PRK07376 134 SMLGLVISPNLVQIYVFWELVGMCSYLLVgFWYDRKGAADAAQKAFVVNRVGDFGLLLGILGLFWATGsfdFDGIadrls 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 167 ---------NW-------LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFF 229
Cdd:PRK07376 214 elvssgavsGWlalllciLVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARmYPVFEQFPAVMTV 293

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226968611 230 FLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:PRK07376 294 IAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSG 361
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 97-294 5.48e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 102.62  E-value: 5.48e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  97 MIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNFMEINWLF----- 170
Cdd:MTH00108 128 MLILVTANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFmlnpn 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 171 --FFSLMT-------KSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNfCL--MSMF 239
Cdd:MTH00108 208 nsNLPLMGlllaatgKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFHPLMENNKTIQTLTL-CLgaITTL 286

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 226968611 240 FSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFI 294
Cdd:MTH00108 287 FTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFM 341
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 97-297 2.43e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 100.80  E-value: 2.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  97 MIMLILSMNILVMIFGWELLGLSSFFLIFFYNNN-DSWKSAIKTFLNNKFGDCMIIISM---------LNFMLMNN---- 162
Cdd:MTH00032 124 MMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTRiQANKAAIKAIVVNRVGDVGVILGMvliyktigsLDFLTFNGgsvg 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 163 --------------------FMEINWLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFF 221
Cdd:MTH00032 204 sgimdrgyygggayesplapFAIIGILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRsFPLFE 283

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 226968611 222 FFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMI-LLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:MTH00032 284 KAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIgIEGSHNVGLFHLVNHAFFKALLFLSAG 360
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 97-297 3.00e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 100.47  E-value: 3.00e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  97 MIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISM---------LNFMLMNNFME- 165
Cdd:MTH00210 124 MIVLVTSDNYVQLFIGWEGVGLCSYLLInFWLTRIKANKAAIKAMLINRVGDIGLVLAMimilkefgtLEFSTISSLLVt 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 166 ---------INWLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFC-L 235
Cdd:MTH00210 204 ninkesltiICLLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLALTIVTILgA 283

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226968611 236 MSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:MTH00210 284 LTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAG 345
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 44-293 1.46e-21

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 98.45  E-value: 1.46e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  44 NINFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFL 123
Cdd:PRK12647  55 GVNLSFLLDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 124 IFFYNNN-DSWKSAIKTFLNNKFGDC-----MIII-------SMLNFMLMNN-------FMEINWLFFFSLMTKSAQYPF 183
Cdd:PRK12647 135 IGFNHEReAARRAALQALLVTGGGGLallagLILLgnvtgtySLSELLASGDvirehplYLAILLLVLGGAFTKSAQFPF 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 184 MAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYF-NFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQ 262
Cdd:PRK12647 215 HFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNpVLGGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSA 294

                        250       260       270
                 ....*....|....*....|....*....|....
gi 226968611 263 IGLMMFMILLNMK--FLTFF-YLCNHAFFKSLMF 293
Cdd:PRK12647 295 LGTLVMLLGLGSElaIKAAVlFLVAHSLYKGALF 328
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 76-293 6.08e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 95.21  E-value: 6.08e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  76 YMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWKSAIKTFLNNKFGDCMIIISM- 154
Cdd:COG0651   99 YMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVg 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 155 --------LNFM-LMNNFMEIN--------WLFFFSLMTKSAQYPFMAWLPMAMS-APTPISAMVhSSTLVTAGLYILFR 216
Cdd:COG0651  179 llygatgtLNMAdLAARLAELDpglllaafALLLVGFGIKAALFPLHFWLPDAYPaAPSPVSALL-SGLLTKVGVYAILR 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 217 YFNFFFFFFNSFFFLNFCL----MSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTF---FYLCNHAFFK 289
Cdd:COG0651  258 VLTLLFGADPALFLGTLLLvlglLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAgalFHLLNHALAK 337


                 ....
gi 226968611 290 SLMF 293
Cdd:COG0651  338 ALLF 341
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 45-298 1.37e-19

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 92.60  E-value: 1.37e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611   45 INFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFLI 124
Cdd:TIGR00940  67 LNFTLYMDGLALLFSLLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSFLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  125 -FFYNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNFMEINW------------LFFFSLM-------TKSAQYPFM 184
Cdd:TIGR00940 147 sYWHHRAHSRYGAQKSLTITVFGGLAMLGGLILLGKITGSFSIDAviasadairnspLFGTAMVlvllgafTKSAQFPFH 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  185 AWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYF-NFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQI 263
Cdd:TIGR00940 227 IWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTpVFAGTEAWFWIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQL 306

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 226968611  264 GLMMFMILLNMKFLTF----------------FYLCNHAFFKSLMFINMGM 298
Cdd:TIGR00940 307 GLIMVLLGLGSPSYHYqgddskiyalaavaavFHLINHATFKGSLFMAAGI 357
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 97-297 1.34e-18

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 89.21  E-value: 1.34e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  97 MIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGDCMII--ISMLNFM--------LMNNFME 165
Cdd:PRK12645 123 MLGVVLSDNLIVLYLFWELTSISSFLLIsYWYEREASRYGAQKSMLITVFGGLSMLggFILLYIMtgsfsireMIANADE 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 166 I--NWLFFFSL-------MTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYF-NFFFFFFNSFFFLNFCL 235
Cdd:PRK12645 203 IqnSPLFIPAMilillgaFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTpIFAGSQVWFWTVTLVGL 282

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226968611 236 MSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTF----------------FYLCNHAFFKSLMFINMG 297
Cdd:PRK12645 283 ITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLHYqgddskiyaaaitaaiFHLINHATFKGSLFMIVG 360
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 96-297 1.40e-18

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 88.49  E-value: 1.40e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWKSAIKTFLNNKFGD-------CMIIISMLNFMLMN----NFM 164
Cdd:PRK06525 125 AMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaaATLFLQTGTFALSAlsglHGS 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 165 EINWLF---FFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFFFF--FNSFFFLNFCLMSMF 239
Cdd:PRK06525 205 LKYLVFlgiLFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIphVIGYVGAVMAIVTLL 284

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 226968611 240 FSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLT------FFYLCNHAFFKSLMFINMG 297
Cdd:PRK06525 285 YGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSRlalegsIAYIFNHAFAKSLFFLVAG 348
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 169-293 1.40e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 79.15  E-value: 1.40e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 169 LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYFN------FFFFFFNSFFFLNFCLMSMFFSS 242
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFtvfggdFRFALGLGWLLAVLALLSMLVGS 286

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 226968611 243 LKAMVEKDIKKMIALSTLSQIGLMMFMI-LLNMKFLT--FFYLCNHAFFKSLMF 293
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLaLLTPLALAagLLHLLHHALMKGALF 340
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 95-297 2.74e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 79.20  E-value: 2.74e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  95 MSMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNN-DSWKSAIKTFLNNKFGDcmiiISMLNFMLM-------NNFMEI 166
Cdd:PRK12644 117 GAMFGLVTSDNLLLLYVFWELTTVLSFLLIGHYAERaASRRAALQALLVTTAGG----LAMLVGIIIlgqaagtYRLSEL 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 167 ---NW----------LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYF-NFFFFFFNSFFFLN 232
Cdd:PRK12644 193 ladPPtgpavsvavvLILVGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLApGFADVPVWRPTVLV 272

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 233 FCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLN-----MKFLTFfyLCNHAFFKSLMFINMG 297
Cdd:PRK12644 273 LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGtrdaaLAGLAM--LLAHALFKAALFLVVG 340
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-297 4.65e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 78.31  E-value: 4.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFlnnkfgdcmIIISMLNFMLMNNFMEINW------ 168
Cdd:PRK12648 119 AMLGIVLSGNLILLVVFWELTSLSSFLLIgYWHHRADARRGARMAL---------TVTGAGGLALLAGVLLLGHivgsyd 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 169 ----------------------LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFF 225
Cdd:PRK12648 190 ldvvlaagdlirahplyppalvLILLGAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARlWPVLAGTEE 269

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 226968611 226 NSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLT---FFYLCNHAFFKSLMFINMG 297
Cdd:PRK12648 270 WFWIVGGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLAAvaaIFHIINHATFKASLFMAAG 344
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 103-344 4.19e-14

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 72.73  E-value: 4.19e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  103 SMNILVMIFGWELLGLSSFFLI-FFYNNNDSWKSAIKTFLNNKFGDCMIIISM----------------LNFMLMNNFME 165
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGIslmynytgtlsfdelsKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  166 INWLFFF---SLMTKSAQYPFMAWLPMA-MSAPTPISAMVhSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFCL--MSMF 239
Cdd:pfam00361  81 LLLLFLLilvGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSPFIQQILLILaiISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  240 FSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKF---LTFFYLCNHAFFKSLMFI---NMGMKMMKnfSNQFNFNMN 313
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLcagSVIYRRVH--TRNIRDYGG 237

                         250       260       270
                  ....*....|....*....|....*....|.
gi 226968611  314 NLNLDLIYNISFMISCFNLMNIAFFSSFFIK 344
Cdd:pfam00361 238 LAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 45-298 6.41e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 74.48  E-value: 6.41e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  45 INFVFLIDFYCLMFMLTVLVVVFNVLNFMNIYMKKNYNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFLI 124
Cdd:PRK12649  72 VEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLI 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 125 FFYNNN-DSWKSAIKTFLNNKFGDCMIIISML----------------NFMLMNN------FMEINWLFFFSLMTKSAQY 181
Cdd:PRK12649 152 GYWRHRpESVYGATKSLLITAGGGLFMFAGFLllhvitgtydiatilqDSELIENikghplFLITLILIFIGAAAKSAQG 231

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 182 PFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSFFFLNFCLMSMFFSSLKAMVEKDIKKMIALSTL 260
Cdd:PRK12649 232 PFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARiHPIFSGTEAWFILVSGTGMITMVLAGFLAFRQTDIKAILAYSTI 311

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 226968611 261 SQIGLMMFMILLNMKF-------LTFFYLCNHAFFKSLMFINMGM 298
Cdd:PRK12649 312 SQLAYLMTMYGYTTYHepglgvaAATFHLLNHATFKACLFLVAGI 356
ndhF CHL00025
NADH dehydrogenase subunit 5
 96-293 8.63e-12

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 67.61  E-value: 8.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMN-ILVMIFgWELLGLSSFFLIFFYNNNDSWKSAI-KTFLNNKFGDCMIIISMLN-------------FMLM 160
Cdd:CHL00025 134 SMLGLVTSSNlIQIYIF-WELVGMCSYLLIGFWFTRPIAANACqKAFVTNRVGDFGLLLGILGfywitgsfefrdlFEIF 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 161 NNFMEIN-----------WLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFR-YFNFFFFFFNSF 228
Cdd:CHL00025 213 NNLIYNNevnllfatlcaFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARlLPLFIVIPYIMN 292

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 226968611 229 FFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMF 293
Cdd:CHL00025 293 LISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLF 357
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
96-297 1.42e-10

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 63.56  E-value: 1.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWK-SAIKTFLNNKFGDCMIIISmlnFMLM-----NNFMEINW- 168
Cdd:PRK08168 112 AVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPFARlAAHKKFIADRLAELLLLAA---AALAylevgSLSLSALWa 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 169 ----------------LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSStLVTAGLYILFRYF-NFFFFFFNSFFFL 231
Cdd:PRK08168 189 hlaaqgaspslqaaalLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLIRFApLLEQAPPARWLLV 267

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 226968611 232 NFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:PRK08168 268 LVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSAS 333
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 96-297 1.26e-09

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 60.67  E-value: 1.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  96 SMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWKSA-IKTFLNNKFGDCMIiisMLNFMLM---------NNFME 165
Cdd:PRK06521 125 SMVLVLLADDAFSFLVAWETMSLSSWFLVIANHREAEIRRAgFLYLLMAHAGALAI---LLAFGLLaresgsydfAAMRA 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 166 IN----W------LFFFSLMTKSAQYPFMAWLPMAM-SAPTPISAMVhSSTLVTAGLYILFRYFNFFFFFFNS---FFFL 231
Cdd:PRK06521 202 AHlspfWaslvflLALFGFGAKAGLVPLHVWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRVVFDLLGAPGWwwgVLVL 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 232 NFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLT--------------FFYLCNHAFFKSLMFINMG 297
Cdd:PRK06521 281 ALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFIAygmpllaalaltaaLYHLLNHALFKSLLFLGAG 360
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 169-297 2.44e-09

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 59.40  E-value: 2.44e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 169 LFFFSLMTKSAQYPFMAWLPMA-MSAPTPISAMVhSSTLVTAGLY----ILFRYFNFFFFFFNSFFFLNFCLMSMFFSSL 243
Cdd:PRK08377 211 LLIFGLAVEAELFPLNAWAPDAyQAAPHPITVMF-SAFVVKAGLYamarILYLMQNANGWSSVLKLVIIMATLTVFFAEL 289

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 226968611 244 KAMVEKDIKKMIALSTLSQIGLMMFMILLNMKF---LTFFYLCNHAFFKSLMFINMG 297
Cdd:PRK08377 290 SALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVG 346
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 169-293 4.09e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 58.81  E-value: 4.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 169 LFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRyfNFFFFFFNSFFFLNFCLMSMFFSSLKAMVE 248
Cdd:PRK07234 189 LIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVR--CALDVPGLDLIVRIFGVGTALLGVLFALLE 266

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 226968611 249 KDIKKMIALSTLSQIGlmmfmILLNMKFLTFFYLCNHAFFKSLMF 293
Cdd:PRK07234 267 KDLKRMLAFSTISQLG-----FILAAPLVGGLYALAHGLVKSTLF 306
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 98-433 5.71e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 58.29  E-value: 5.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  98 IMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWKSAIKTFLNNKFGDCMIIISML--------------NFMLMNNF 163
Cdd:PRK06589 130 VLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAViliytktgnldfvsGGLFSKNQ 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 164 MEINWLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYFNFFF-------FFFNSFFFLNFCLM 236
Cdd:PRK06589 210 SIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFglsylqrIFAEFNWLIFIPIV 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 237 SMFFSSLKAMVEKDIKKMIALSTLSQIGLMM---FMILLNMKFLTFFYLCNHAFFKSLMFINMGMKMMKNFSNQFNFNMN 313
Cdd:PRK06589 290 SIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHG 369

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 314 NLNLDLIYNISFMISCFNLMNIAFFSSFFIKEMMVNMMNFNMNNMYMYIFFFMSSFFTMQYALKLILYGYKLnFKIKFYI 393
Cdd:PRK06589 370 TSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIASSILSALYLLKILSSI-YKPSLSE 448

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 226968611 394 NFFVKKSNFSFLLMNLISLFYMKMMYNFFLFEIKHSLIII 433
Cdd:PRK06589 449 NSFITKSLPYLMQISVITCCCALTLFYFIQILIREFLAYI 488
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 169-298 1.18e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 57.29  E-value: 1.18e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 169 LFFFSLMTKSAQYPFMAWLPMAMS-APTPISAMVhSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFCLM---------SM 238
Cdd:PRK12667 228 LALWAFTIKAAIFPNHFWLPDAHPaAPSPVSAML-SGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSpiliilgavSA 306

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 226968611 239 FFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFL---TFFYLCNHAFFKSLMFINMGM 298
Cdd:PRK12667 307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGlaaALFHIINHAIAKSLLFLASGV 369
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 81-424 1.32e-08

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 56.76  E-value: 1.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  81 YNFYIFFLFTFLFIMSMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWKSAIKTFLNNKFGDCMII--ISMLNFM 158
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLfsIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 159 LMNNFMEINWLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSSTLVTAGLYILFRYfnfffffFNSFFFLNFCLMSM 238
Cdd:MTH00160  82 LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL-------INNNFIIIIIILSA 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 239 FFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLcnhafFKSLMFINMGMKMMKNFSNQFNFNMNNLNLD 318
Cdd:MTH00160 155 IIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFL-----IYSIISLSIILLFNKFNIFFLNQLFNSNNKS 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 319 LIYNISFMISCFNLMNIAFFSSFFIKEMMVNMMNFNMNNMYMYIFFFMSSFFTMQYALKLILYGYKLNFKIKFYINFFVK 398
Cdd:MTH00160 230 KKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKN 309

                        330       340
                 ....*....|....*....|....*.
gi 226968611 399 KSNFSFLLMNLISLFYMKMMYNFFLF 424
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLLFLL 335
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 95-297 1.41e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 57.43  E-value: 1.41e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  95 MSMIMLILSMNILVMIFGWELLGLSSFFLIFF-YNNNDSWKSAIKTFLNNKFGDCMIIISMLNFMLMNNFMEINWL---- 169
Cdd:PRK08667 122 LSMLGVVASANTFSFLFFWEIMALSSFFLVMNdYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLgasa 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 170 ---------FFFSLMTKSAQYPFMAWLPMAMSA-PTPISAMVhSSTLVTAGLYILFRYFNFFFF--FFNSFFFLNFCLMS 237
Cdd:PRK08667 202 gilslvfllLFLGFGIKAGIIPFHKWLPYAHPAsPSNVSALM-SGVMLKVAVYGLVRFLMDVLSpeLWWGVLILLAGSIS 280

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 226968611 238 MFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTF--------------FYLCNHAFFKSLMFINMG 297
Cdd:PRK08667 281 ALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYgldtlallalggalFHSLNHALFKSLLFLTAG 354
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 170-293 3.00e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 53.01  E-value: 3.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 170 FFFSLM---TKSAQYPFMAWLPMAMS-APTPISAMVhSSTLVTAGLYILFRYFNFFFFFFNSFF----FLNFCLMSMFFS 241
Cdd:PRK06458 217 FVFLLIgfgTKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYYILIDAAIGSDFpgrlLLIFGLLSVLVA 295

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 226968611 242 SLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTF---FYLCNHAFFKSLMF 293
Cdd:PRK06458 296 AFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFaalLHMLNHSLTKSAIF 350
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 166-297 7.40e-07

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 51.57  E-value: 7.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 166 INWLFFFSLMTKSAQYPFMAWLPMAMSAPTPISAMVHSStLVTAGLYILFRYFNFFFFFFNSFFFLNFCLMSMFFSSLKA 245
Cdd:PRK08601 206 INLLLILAVMIPAAQWPFQRWLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLIGTGIS 284

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 226968611 246 MVEKDIKKMIALSTLSQIGLMMFMILLNMKFLTFFYLCNHAFFKSLMFINMG 297
Cdd:PRK08601 285 LVQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSG 336
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 95-267 2.07e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 47.00  E-value: 2.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611  95 MSMIMLILSMNILVMIFGWELLGLSSFFLIFFYNNNDSWKSAIKTFLNNKFGDCMIIISML--------NFMLMNNFMEI 166
Cdd:COG1008  122 AGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILalyflagaLTFDIAELAAA 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 167 N----------WLFFFSLMTKSAQYPFMAWLPMA-MSAPTPISaMVHSSTLVTAGLYILFRYFNFFF---FFFNSFFFLN 232
Cdd:COG1008  202 PlpltaqlllfLAFFIAFAVKVPMFPFHTWLPDAhVEAPTAGS-VLLAGVLLKMGGYGLLRFALPLFpeaSAYFAPLLAA 280

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 226968611 233 FCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMM 267
Cdd:COG1008  281 LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 169-297 8.53e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.09  E-value: 8.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 169 LFFFSLMTKSAQYPFMAWLPMAMS-APTPISAMVHSSTLvtAGLYILFR-----YFNFFFFFFNSFFFLNFCLMSMFFSS 242
Cdd:PRK08376 225 LFIAGLAMKSGAVPVHMWLPDAYPaAPSSISAMLLVIKQ--AGLYALARvlfsiYGPAINLATVGWVIIILGCLTMFVGV 302

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 243 LKAMVEKDIKKMIALSTLSQIGLMMFMILLNMKFL---------------TFFYLCNHAFFKSLMFINMG 297
Cdd:PRK08376 303 AMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFLTAG 372
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 161-297 5.01e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.80  E-value: 5.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 161 NNFMEINWLF-FFSLMTKSAQYPFMAWLPMAMS-APTPISAMVHSST------LVTAGLYILFRYFNFFFFFFNSFFFLN 232
Cdd:PRK12662 205 NRAIQIGVLFiMVGLFIKAALFPFHKWLIQAYSeAPSFISVFFSGTStkvmiyLIIRIVYDVFKANFVFTTLPFNNVFMI 284

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226968611 233 FCLMSMFFSSLKAMVEKDIKKMIALSTLSQIGLMMFMILLNMK---FLTFFYLCNHAFFKSLMFINMG 297
Cdd:PRK12662 285 LAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYyglAAAVAYIVNHSIVKSALFMVSG 352
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 177-273 1.87e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.72  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 177 KSAQYPFMAWLPMAM-SAPTPISAmVHSSTLVTAGLYILFRYFNFFFFFFNSFFFLNFC-LMSMFFSSLKAMVEKDIKKM 254
Cdd:PRK12665 222 KAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFPGGGLDTLLMVVaLLTMVVGILGAIAQSDIKRL 300

                         90
                 ....*....|....*....
gi 226968611 255 IALSTLSQIGLMMFMILLN 273
Cdd:PRK12665 301 LSFTLVSHIGYMVFGIALS 319
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 102-294 3.14e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 40.37  E-value: 3.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 102 LSMNILVMIFGWELLGLSSFFLIFFyNNNDSWKSAIKTFLNNKFGDCMI---------------IISMLNFMLMNNFMEI 166
Cdd:PRK08668 116 LANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVLSAIGAYAMlyaifliyaktgtfdFADISQGLINDTSTGF 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226968611 167 NWLFFFSLM----TKSAQYPFMAWLPMAMS-APTPISAMVhSSTLVTAGLYILFRYFNFFFFFFNSF------------- 228
Cdd:PRK08668 195 ALIVFLFLLafgvAKAGIFPLHVWAPDAYSeAPQSFSAVL-SGQLSKLGAYGFLLVLYVLPGTKLFSefgtyrgvplfny 273

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 226968611 229 FFLNFCLMSMFFSSLKAMVEKDIKKMIALSTLSQIG--LMMFMILLNMKFL-TFFYLCNHAFFKSLMFI 294
Cdd:PRK08668 274 ILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGyiLVGLGLGTSLGFAgGLFHVFNHALFKGLFFL 342
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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