NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|237688569|ref|YP_002905187|]
View 

ribosomal protein S15 (chloroplast) [Pinus contorta]

Protein Classification

30S ribosomal protein S15( domain architecture ID 10000021)

30S ribosomal protein S15 binds the central domain of 16S rRNA and is required for the assembly of the ribosomal small subunit.

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-88 1.76e-42

ribosomal protein S15


:

Pssm-ID: 214339  Cd Length: 90  Bit Score: 133.16  E-value: 1.76e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237688569  1 MIKNLSISSSLI--PDKQRGSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRDKLRYDDLIG 78
Cdd:CHL00027  1 MVKNSFISVISQeeKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80

                        90
                ....*....|
gi 237688569 79 QLGIRGLKTR 88
Cdd:CHL00027 81 QLGIRELKTR 90
 
Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-88 1.76e-42

ribosomal protein S15


Pssm-ID: 214339  Cd Length: 90  Bit Score: 133.16  E-value: 1.76e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237688569  1 MIKNLSISSSLI--PDKQRGSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRDKLRYDDLIG 78
Cdd:CHL00027  1 MVKNSFISVISQeeKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80

                        90
                ....*....|
gi 237688569 79 QLGIRGLKTR 88
Cdd:CHL00027 81 QLGIRELKTR 90
RpsO COG0184
Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 18-84 5.23e-19

Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S15P/S13E is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439954  Cd Length: 89  Bit Score: 73.55  E-value: 5.23e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 237688569 18 GSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRDKLRYDDLIGQLGIRG 84
Cdd:COG0184  23 GSPEVQIALLTERINNLTEHLKEHKKDHHSRRGLLKMVGKRRRLLDYLKKKDIERYRALIAKLGLRK 89
Ribosomal_S15 pfam00312
Ribosomal protein S15;
18-83 1.27e-17

Ribosomal protein S15;


Pssm-ID: 459756  Cd Length: 81  Bit Score: 70.15  E-value: 1.27e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 237688569  18 GSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRDKLRYDDLIGQLGIR 83
Cdd:pfam00312 16 GSPEVQIALLTERINNLTEHLKEHKKDKHSRRGLLKLVGKRRRLLKYLKRKDVERYRYLIEKLGLR 81
S15_NS1_EPRS_RNA-bind cd00677
S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, ...
 21-66 1.24e-08

S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.


Pssm-ID: 238361  Cd Length: 46  Bit Score: 46.35  E-value: 1.24e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 237688569 21 ESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLY 66
Cdd:cd00677   1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46
 
Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-88 1.76e-42

ribosomal protein S15


Pssm-ID: 214339  Cd Length: 90  Bit Score: 133.16  E-value: 1.76e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237688569  1 MIKNLSISSSLI--PDKQRGSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRDKLRYDDLIG 78
Cdd:CHL00027  1 MVKNSFISVISQeeKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80

                        90
                ....*....|
gi 237688569 79 QLGIRGLKTR 88
Cdd:CHL00027 81 QLGIRELKTR 90
RpsO COG0184
Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 18-84 5.23e-19

Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S15P/S13E is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439954  Cd Length: 89  Bit Score: 73.55  E-value: 5.23e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 237688569 18 GSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRDKLRYDDLIGQLGIRG 84
Cdd:COG0184  23 GSPEVQIALLTERINNLTEHLKEHKKDHHSRRGLLKMVGKRRRLLDYLKKKDIERYRALIAKLGLRK 89
rpsO PRK05626
30S ribosomal protein S15; Reviewed
 18-84 2.76e-18

30S ribosomal protein S15; Reviewed


Pssm-ID: 180170  Cd Length: 89  Bit Score: 72.07  E-value: 2.76e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 237688569 18 GSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRDKLRYDDLIGQLGIRG 84
Cdd:PRK05626 23 GSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKDVERYRALIERLGLRR 89
Ribosomal_S15 pfam00312
Ribosomal protein S15;
18-83 1.27e-17

Ribosomal protein S15;


Pssm-ID: 459756  Cd Length: 81  Bit Score: 70.15  E-value: 1.27e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 237688569  18 GSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRDKLRYDDLIGQLGIR 83
Cdd:pfam00312 16 GSPEVQIALLTERINNLTEHLKEHKKDKHSRRGLLKLVGKRRRLLKYLKRKDVERYRYLIEKLGLR 81
S15_NS1_EPRS_RNA-bind cd00677
S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, ...
 21-66 1.24e-08

S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.


Pssm-ID: 238361  Cd Length: 46  Bit Score: 46.35  E-value: 1.24e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 237688569 21 ESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLY 66
Cdd:cd00677   1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46
PTZ00119 PTZ00119
40S ribosomal protein S15; Provisional
 18-69 5.95e-05

40S ribosomal protein S15; Provisional


Pssm-ID: 240278  Cd Length: 302  Bit Score: 39.55  E-value: 5.95e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 237688569  18 GSVESQVFYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLYKRD 69
Cdd:PTZ00119 125 GSAPVQIGCLTEKILNLRAHLILRCKDHPKKRTMSILLARRQKLMKYLYKTD 176
rps15p PRK08561
30S ribosomal protein S15P; Reviewed
 25-74 5.73e-03

30S ribosomal protein S15P; Reviewed


Pssm-ID: 236287 [Multi-domain]  Cd Length: 151  Bit Score: 33.68  E-value: 5.73e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 237688569  25 FYLTNRVLILTQHLQLHGRDYSSQRGLWKILSKRKQLLVYlYKR-DKL----RYD 74
Cdd:PRK08561  89 RNLIKKAVNLRKHLEENPKDLHNKRGLQLIESKIRRLVKY-YKRtGVLpadwRYS 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH