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Conserved domains on  [gi|256985306|ref|YP_003162744|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Enoplosus armatus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 1.33e-82

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 241.20  E-value: 1.33e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   1 MTYIMYLFLLGLVLGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306  81 TWGSGPVIMYMAMYVVAVVLVSSFFWGGWFETSWVPVDELEEFSGLRGDMGGVALMYSWGGGMLVISAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 256985306 161 LTRGLSRGTLRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 1.33e-82

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 241.20  E-value: 1.33e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   1 MTYIMYLFLLGLVLGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306  81 TWGSGPVIMYMAMYVVAVVLVSSFFWGGWFETSWVPVDELEEFSGLRGDMGGVALMYSWGGGMLVISAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 256985306 161 LTRGLSRGTLRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
21-147 5.71e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 54.43  E-value: 5.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   21 SNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAAL-AAEPYPETWGSGPVIMYMAMYVVAVV 99
Cdd:pfam00499   5 TSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLA 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 256985306  100 LVsSFFWGGWFETSWVPVDELEEFSglrGDMGGVALMYSWGGGMLVIS 147
Cdd:pfam00499  85 LL-LLVLLSASLTPAAAAAAPDVGN---IEAIGELLFTDYLLPFELAS 128
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 1.33e-82

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 241.20  E-value: 1.33e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   1 MTYIMYLFLLGLVLGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306  81 TWGSGPVIMYMAMYVVAVVLVSSFFWGGWFETSWVPVDELEEFSGLRGDMGGVALMYSWGGGMLVISAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 256985306 161 LTRGLSRGTLRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-173 1.98e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 162.33  E-value: 1.98e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   1 MTYIMYLFLLGLVLGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306  81 TWGSGPVIMYMAMYVVaVVLVSSFFWGGWFETSWVPVDELEEFSGLRGDMGGVALMYSWGGGMLVISAWVLLLTLFVVLE 160
Cdd:MTH00065  81 AWGSWSVLVYVLFYLL-LLIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLE 159

                        170
                 ....*....|...
gi 256985306 161 LTRGLSRGTLRAV 173
Cdd:MTH00065 160 VTRGLSRGSLRAV 172
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 4.04e-37

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 126.02  E-value: 4.04e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   1 MTYIMYLFLLGLVLGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306  81 TWGSGPVIMYMAMYVVAVVLVSSFFWGGW-FETSWVPVDELEEFSGLRGDMGGVALMYSWGGGMLVISAWVLLLTLFVVL 159
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLWgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 256985306 160 ELTRGLSRGTLRAV 173
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-149 4.22e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 100.26  E-value: 4.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   1 MTYIMYLFLLGLVLGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 256985306  81 TWGSGPVIMYMAMY--VVAVVLVSSFFWGGWFE--------TSWVpVDELEEFSGLRGDMGGVALMYSWGGGMLVISAW 149
Cdd:MTH00109  82 TWVSNKVVLGALLLglLMELLLVLYVLKDDEVEvvfnfnglGDWV-IYDTGGSGFFSEDAMGVAALYSYGTWLVVVTGW 159
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-173 4.96e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 99.68  E-value: 4.96e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   1 MTYIMYLFLLGLVLGLAAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306  81 TWGSGPVIMYMAMYVVAVVLVSSFFWGGWFETSWVPVDELEEFSglrgdMGGVALMYSWGGGMLVISAWVLLLTLFVVLE 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLD-----LSGVSDLYSRGFFLLLLGGVVLFLVLFVVLE 155

                        170
                 ....*....|...
gi 256985306 161 LTRGLSRGTLRAV 173
Cdd:MTH00214 156 LVRGLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 24-172 6.88e-17

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 73.40  E-value: 6.88e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306  24 SPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPETWGSGPVIMYMAMYVVaVVLVSS 103
Cdd:MTH00045  22 SPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGEVLVLSLLLSL-WVFISF 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 256985306 104 FFWGGWFETSWvpvdeleEFSGLRGDMGGVALmYSWGGGMLVISAWVLLLTLFVVLELTRGLSRGTLRA 172
Cdd:MTH00045 101 DNFLELSNNNW-------SLVSLSDLVGSSEL-YNSGGLYLLLGGFILLVALVVALVISFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
21-147 5.71e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 54.43  E-value: 5.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   21 SNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAAL-AAEPYPETWGSGPVIMYMAMYVVAVV 99
Cdd:pfam00499   5 TSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLA 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 256985306  100 LVsSFFWGGWFETSWVPVDELEEFSglrGDMGGVALMYSWGGGMLVIS 147
Cdd:pfam00499  85 LL-LLVLLSASLTPAAAAAAPDVGN---IEAIGELLFTDYLLPFELAS 128
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-105 2.02e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 36.79  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256985306   1 MTYIMYLFLLGLVLGLAAVASNPSPYFAALglVVVAGMGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAaePYPE 80
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVL--LLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLS--PNPL 76

                         90       100
                 ....*....|....*....|....*
gi 256985306  81 TWGSGPVIMYMAMYVVAVVLVSSFF 105
Cdd:MTH00152  77 FGSNFKFVFFSLTLFGFLGLFFFFL 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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