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Conserved domains on  [gi|301353330|ref|YP_003795556|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Panonychus citri]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-276 7.32e-30

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 115.31  E-value: 7.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330   1 MFFINMYMYMFMIFISLFYKNFIMMWFFMEMSNMFFFFMLNFLNKF--KENNIIYFIIQEMSSIYLMFFFIFNK------ 72
Cdd:MTH00160   6 SKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLmsSESSLKYFLIQALASIILLFSIILNMlnlmlf 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  73 ----NMFVFIFLLVKLGMFPFHNWILKICKNFSWNISFILLNIQKIIPLMFMYLIFSMNFILIIFFN-MIIFIINLFNCS 147
Cdd:MTH00160  86 nnisSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILsAIIGAIGGLNQT 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330 148 NLKYFFFLNSLMSMSWFMLIILISKMFFFIYMISYLILNFFSFKVLIKKSLINF-------LFNMKYNFLIFFLILNIIS 220
Cdd:MTH00160 166 SLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLnqlfnsnNKSKKIKFLLFLNLLSLGG 245

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 301353330 221 FPPSLMFLYKMKILSFLFLMKLNFFFLMILLLFFIYMYMSFFFFFLSFFMNLKMEK 276
Cdd:MTH00160 246 LPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK 301
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-276 7.32e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 115.31  E-value: 7.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330   1 MFFINMYMYMFMIFISLFYKNFIMMWFFMEMSNMFFFFMLNFLNKF--KENNIIYFIIQEMSSIYLMFFFIFNK------ 72
Cdd:MTH00160   6 SKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLmsSESSLKYFLIQALASIILLFSIILNMlnlmlf 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  73 ----NMFVFIFLLVKLGMFPFHNWILKICKNFSWNISFILLNIQKIIPLMFMYLIFSMNFILIIFFN-MIIFIINLFNCS 147
Cdd:MTH00160  86 nnisSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILsAIIGAIGGLNQT 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330 148 NLKYFFFLNSLMSMSWFMLIILISKMFFFIYMISYLILNFFSFKVLIKKSLINF-------LFNMKYNFLIFFLILNIIS 220
Cdd:MTH00160 166 SLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLnqlfnsnNKSKKIKFLLFLNLLSLGG 245

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 301353330 221 FPPSLMFLYKMKILSFLFLMKLNFFFLMILLLFFIYMYMSFFFFFLSFFMNLKMEK 276
Cdd:MTH00160 246 LPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK 301
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-276 7.32e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 115.31  E-value: 7.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330   1 MFFINMYMYMFMIFISLFYKNFIMMWFFMEMSNMFFFFMLNFLNKF--KENNIIYFIIQEMSSIYLMFFFIFNK------ 72
Cdd:MTH00160   6 SKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLmsSESSLKYFLIQALASIILLFSIILNMlnlmlf 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  73 ----NMFVFIFLLVKLGMFPFHNWILKICKNFSWNISFILLNIQKIIPLMFMYLIFSMNFILIIFFN-MIIFIINLFNCS 147
Cdd:MTH00160  86 nnisSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILsAIIGAIGGLNQT 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330 148 NLKYFFFLNSLMSMSWFMLIILISKMFFFIYMISYLILNFFSFKVLIKKSLINF-------LFNMKYNFLIFFLILNIIS 220
Cdd:MTH00160 166 SLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLnqlfnsnNKSKKIKFLLFLNLLSLGG 245

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 301353330 221 FPPSLMFLYKMKILSFLFLMKLNFFFLMILLLFFIYMYMSFFFFFLSFFMNLKMEK 276
Cdd:MTH00160 246 LPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK 301
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 10-276 2.14e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 62.97  E-value: 2.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  10 MFMIFISLFYKNFIMMWFFMEMSNMFFFFMLNFLNKFKENNIIYFIIQEMSSIYLMFFFIFnknmFVFIFLLVKLGMFPF 89
Cdd:MTH00091   1 LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFGY----FQFLILMMKIGVAPF 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  90 HNWILKICKNFSWNISFILLNIQKIIPLMFMYLIFSMNFILIIFFNMIIFIINLFNCSNLKYFFFLNSLMSMSWFMLIIL 169
Cdd:MTH00091  77 HFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFF 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330 170 ISKMFFFIYMISYLILNFFSFkvlikkslINFLFNMKYNFLIFFLILNIISFPPSLMFLYKMKILSFLFLMKLNFFFLMI 249
Cdd:MTH00091 157 FSFFNVFFLFFYYFLLMLFLI--------PKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLL 228

                        250       260
                 ....*....|....*....|....*..
gi 301353330 250 LLLFFIYMYMSFFFFFLSFFMNLKMEK 276
Cdd:MTH00091 229 FLMFLSVLSLSFWLVNLSTKLFLMLFK 255
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-241 1.09e-09

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 58.36  E-value: 1.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330   1 MFFINMYMYMFMIFI----SLFYKNFIMMWFFMEMSNMFFFFMLNFLNKF--KENNIIYFIIQEMSSIYLMF-------- 66
Cdd:MTH00144   1 MSSPSNLLFLFLMVMgtllSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSseSESVVKYFIIQSLGSSLLIFgslimynl 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  67 FFIFNKNMFVFIFLLVKLGMFPFHNWILKICKNFSWNISFILLNIQKIIPLMFMYLIFSMNFILIIFFNMIIFI-----I 141
Cdd:MTH00144  81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLSalvgsI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330 142 NLFNCSNLKYFFFLNSLMSMSWFMLIILISKMFFFIYMISYLILNFFSFKVLIK------KSLINFLFNMKYNFLIFFLI 215
Cdd:MTH00144 161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSgdsgsmKDLGSLKPSYKTGLSIISLL 240

                        250       260
                 ....*....|....*....|....*.
gi 301353330 216 LNIISFPPSLMFLYKMKILSFLFLMK 241
Cdd:MTH00144 241 LSLGGLPPFLGFCSKLLVLISSMESS 266
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-276 2.62e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 45.05  E-value: 2.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  11 FMIFISLFYKNFIMMWFFMEMSNMFFFFMLNFLNKFKENN--IIYFIIQEMSSIYLMF---------FFIFNKNMFVFIF 79
Cdd:MTH00197   9 GGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEgaMKYFLFQEFGSALLLMggslsfsnlYLSLLSVVLVILG 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  80 LLVKLGMFPFHNWILKICKNFSWNISFILLNIQKIIPLMFMYLIFSMNFILIIFFNMIIFIINL--FNCSNLKYFFFLNS 157
Cdd:MTH00197  89 LLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIggMNQSNIRQLLAYSS 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330 158 LMSMSWFMLIILISKMFFFIYMISYLILNFFSFKVLIKKSLI-------NFLFNMKYNFLIFFLILNIISFPPSLMFLYK 230
Cdd:MTH00197 169 IGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSslnqqysNPESMSSNLVFLGLSFLSLGGLPPLSGFFLK 248

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 301353330 231 MKILSFLFLMKLNFFFLMILLLFFIYMYMSFFFFFLSFFMNLKMEK 276
Cdd:MTH00197 249 WLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMIN 294
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 47-239 3.93e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 38.41  E-value: 3.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330  47 KENNIIYFIIQEMSSIYLMFFFIFNKNMF----------------VFIFLLVKLGMFPFHNWILKICKNFSWNISFILLN 110
Cdd:MTH00200  53 VEATTKYFIIQATASALLLFGGLLNAWTSgqwgisemlgplsetlILLALALKLGLAPGHFWVPDVLQGLSLQTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330 111 IQKIIPLMFMYLIFSMNFILIIFFNMIIFI----INLFNCSNLKYFFFLNSLMSMSWFMLIILISKMFFFIYMISYLILN 186
Cdd:MTH00200 133 WQKLAPFALLIQLAPALNSNILLLLGLLSVlvggWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIIT 212

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353330 187 FFSF-------KVLIKKSLINFLFNMKYNFLIFFLILNIISFPPSLMFLYKMKILSFLFL 239
Cdd:MTH00200 213 LTVFlllnllnSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSK 272
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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