|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 738.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00100 1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00100 81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 672.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00119 2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00119 82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 655.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00131 1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00131 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-379 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 649.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00074 2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00074 82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
5-368 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 627.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00191 2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00191 82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPL 368
Cdd:MTH00191 322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
12-365 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 607.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 12 KIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00156 2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 92 ICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVD 171
Cdd:MTH00156 82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 172 KATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTLFSPDLLT 251
Cdd:MTH00156 162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 252 DPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQILFWALVAD 331
Cdd:MTH00156 242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321
|
330 340 350
....*....|....*....|....*....|....
gi 529217319 332 LITLTWIGGQPVEYPFVTIGQTASVMYFLIIITL 365
Cdd:MTH00156 322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
5-377 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 601.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00145 6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00145 86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00145 166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00145 246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVL 325
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIItLIPLSTLIENKLL 377
Cdd:MTH00145 326 FWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFL-ILPLVQKLWDNIL 377
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
5-377 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 583.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00034 5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00034 85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLL 377
Cdd:MTH00034 325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-378 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 564.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 1 MTTP-RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMI 79
Cdd:MTH00016 1 MFSPmRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 80 RYLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSS 159
Cdd:MTH00016 81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 160 LVEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCL 239
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 240 MNLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRP 319
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 320 IAQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIItLIPLSTLIENKLLK 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INPLLMKLWDKLLK 378
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
5-378 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 516.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00022 4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00022 84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00022 244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLK 378
Cdd:MTH00022 324 FWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
3-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 508.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 3 TPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYL 82
Cdd:MTH00053 4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 83 HANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVE 162
Cdd:MTH00053 84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 163 WIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNL 242
Cdd:MTH00053 164 WVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSII 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 243 TLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQ 322
Cdd:MTH00053 244 VFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSK 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 529217319 323 ILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLK 378
Cdd:MTH00053 324 ILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
5-378 |
7.37e-177 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 496.75 E-value: 7.37e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00224 6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00224 86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00224 246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIItLIPLSTLIENKLLK 378
Cdd:MTH00224 326 FWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFI-ISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
5-374 |
3.51e-134 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 388.53 E-value: 3.51e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 5 RKTHPLAKIinNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00033 4 RKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00033 82 NGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00033 162 WGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FS--PDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQ 322
Cdd:MTH00033 242 EPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGK 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 529217319 323 ILFWALVADLITLTWIGGQPV-EYPFVTIGQTASVMYFLIIITLIPLSTLIEN 374
Cdd:MTH00033 322 FFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-373 |
8.10e-130 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 377.59 E-value: 8.10e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 1 MTTPRKTHPLAKIIN---------NSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIAR 71
Cdd:COG1290 1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 72 DVNYGWMIRYLHANGASMFFICLFLHVGRGLYYGSF-----LsleTWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVI 146
Cdd:COG1290 81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 147 TNLLSAIPYIGSSLVEWIWGGFSVDKATLTRFFTFH-FILPFIIAALATIHLLFLHDTGSSNPSG----MTSDPDKITFH 221
Cdd:COG1290 158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFH 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 222 PYYTIKDIFGLILLLLCLMNLTLFSPDLltDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSIL 299
Cdd:COG1290 238 PYYTVKDGFGFFVFLGVFALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 529217319 300 ILVAFPTLHLSKQQSMKFRPIAQILFWALVADLITLTWIGGQPVEYpfVTIGQTASVMYFLIIITLIPLSTLIE 373
Cdd:COG1290 316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
12-365 |
1.20e-121 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 355.79 E-value: 1.20e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 12 KIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 92 ICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVD 171
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 172 KATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGlILLLLCLMNLTLFSPDLLT 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 252 DPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRpiaQILFWALVAD 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLN---KFLVFSFIVV 316
|
330 340 350
....*....|....*....|....*....|....
gi 529217319 332 LITLTWIGGQPVEYPFVTIGQTASVMYFLIIITL 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
12-364 |
4.61e-98 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 295.35 E-value: 4.61e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 12 KIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00046 3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 92 ICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVD 171
Cdd:MTH00046 83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 172 KATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNP-SGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTLFSPDLL 250
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 251 TDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALVLSILILVAFPTLHLSKQQSMkfrpIAQILFWALVA 330
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVS 317
|
330 340 350
....*....|....*....|....*....|....
gi 529217319 331 DLITLTWIGGQPVEYPFVTIGQTASVMYFLIIIT 364
Cdd:MTH00046 318 LFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-206 |
3.06e-97 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 287.73 E-value: 3.06e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 9 PLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 89 MFFICLFLHVGRGLYYGSFLS--LETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 529217319 167 GFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSS 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-204 |
6.84e-87 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 260.78 E-value: 6.84e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 18 LIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFFICLFLH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 98 VGRGLYYGSFLSL--ETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVDKATL 175
Cdd:pfam00033 81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 529217319 176 TRFFTFHFILPFIIAALATIHLLFLHDTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
207-354 |
5.39e-49 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 162.04 E-value: 5.39e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 207 NPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 529217319 287 KLGGVLALVLSILILVAFPTLHLSKQQSMkFRPIAQILFWALVADLITLTWIGGQPVEYPFVTIGQTA 354
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
259-358 |
2.10e-45 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 151.09 E-value: 2.10e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQILFWALVADLITLTWI 338
Cdd:pfam00032 2 ANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWL 81
|
90 100
....*....|....*....|
gi 529217319 339 GGQPVEYPFVTIGQTASVMY 358
Cdd:pfam00032 82 GKQPPTGPYTLLGQIATVYY 101
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
33-208 |
1.37e-43 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 150.63 E-value: 1.37e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 33 FGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFFICLFLHVGRGLYYGSFLSLE- 111
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 112 -TWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVDKATLTRFFTFH-FILPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170
....*....|....*....
gi 529217319 190 AALATIHLLFLHDTGSSNP 208
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
24-209 |
1.65e-40 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 142.55 E-value: 1.65e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 24 PSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFFICLFLHVGRGLY 103
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 104 YGSFLSLE--TWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVDKATLTRFFTF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170 180
....*....|....*....|....*....
gi 529217319 182 H-FILPFIIAALATIHLLFLHDTGSSNPS 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
88-253 |
5.05e-39 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 136.99 E-value: 5.05e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 88 SMFFICLFLHVGRGLYYGSFLSLE--TWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIW 165
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 166 GGFSVDKATLTRFFTFHF-ILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 529217319 245 FSPDLLTDP 253
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
259-339 |
2.55e-10 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 58.47 E-value: 2.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTL-HLSKQQSMKFRPIAQILFwaLVADLITLtW 337
Cdd:CHL00058 66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTVF--LIGTAVAL-W 142
|
..
gi 529217319 338 IG 339
Cdd:CHL00058 143 LG 144
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
259-339 |
9.53e-10 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 57.11 E-value: 9.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTL-HLSKQQSMKFRPIAQILFwaLVADLITLtW 337
Cdd:COG5679 67 ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPVATAVF--LFGTLVTL-W 143
|
..
gi 529217319 338 IG 339
Cdd:COG5679 144 LG 145
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
259-339 |
3.32e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 55.19 E-value: 3.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTL-HLSKQQSMKFRPIAQILFwaLVADLITLtW 337
Cdd:TIGR01156 66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF--LFGTVVAL-W 142
|
..
gi 529217319 338 IG 339
Cdd:TIGR01156 143 LG 144
|
|
|