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Conserved domains on  [gi|529217319|ref|YP_008379033|]
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cytochrome b (mitochondrion) [Lagothrix lagotricha]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 738.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 738.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-373 8.10e-130

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.59  E-value: 8.10e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTPRKTHPLAKIIN---------NSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIAR 71
Cdd:COG1290    1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  72 DVNYGWMIRYLHANGASMFFICLFLHVGRGLYYGSF-----LsleTWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVI 146
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 147 TNLLSAIPYIGSSLVEWIWGGFSVDKATLTRFFTFH-FILPFIIAALATIHLLFLHDTGSSNPSG----MTSDPDKITFH 221
Cdd:COG1290  158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFH 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 222 PYYTIKDIFGLILLLLCLMNLTLFSPDLltDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSIL 299
Cdd:COG1290  238 PYYTVKDGFGFFVFLGVFALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 529217319 300 ILVAFPTLHLSKQQSMKFRPIAQILFWALVADLITLTWIGGQPVEYpfVTIGQTASVMYFLIIITLIPLSTLIE 373
Cdd:COG1290  316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
9-206 3.06e-97

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 287.73  E-value: 3.06e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   9 PLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  89 MFFICLFLHVGRGLYYGSFLS--LETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 529217319 167 GFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSS 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 6.84e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 260.78  E-value: 6.84e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   18 LIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   98 VGRGLYYGSFLSL--ETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
                         170       180
                  ....*....|....*....|....*....
gi 529217319  176 TRFFTFHFILPFIIAALATIHLLFLHDTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
259-339 3.32e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTL-HLSKQQSMKFRPIAQILFwaLVADLITLtW 337
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF--LFGTVVAL-W 142

                  ..
gi 529217319  338 IG 339
Cdd:TIGR01156 143 LG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 738.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 672.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 655.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 649.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  81 YLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 161 VEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 241 NLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPI 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 321 AQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLKW 379
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
5-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 627.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPL 368
Cdd:MTH00191 322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
12-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 607.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  12 KIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00156   2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  92 ICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVD 171
Cdd:MTH00156  82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 172 KATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTLFSPDLLT 251
Cdd:MTH00156 162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 252 DPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQILFWALVAD 331
Cdd:MTH00156 242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321
                        330       340       350
                 ....*....|....*....|....*....|....
gi 529217319 332 LITLTWIGGQPVEYPFVTIGQTASVMYFLIIITL 365
Cdd:MTH00156 322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
5-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 601.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00145   6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00145  86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00145 166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00145 246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVL 325
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIItLIPLSTLIENKLL 377
Cdd:MTH00145 326 FWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFL-ILPLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
5-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 583.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLL 377
Cdd:MTH00034 325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 564.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTP-RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMI 79
Cdd:MTH00016   1 MFSPmRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  80 RYLHANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSS 159
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 160 LVEWIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCL 239
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 240 MNLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRP 319
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 529217319 320 IAQILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIItLIPLSTLIENKLLK 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
5-378 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 516.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00022 244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLK 378
Cdd:MTH00022 324 FWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
3-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 508.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   3 TPRKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYL 82
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  83 HANGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVE 162
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVR 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 163 WIWGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNL 242
Cdd:MTH00053 164 WVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSII 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 243 TLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQ 322
Cdd:MTH00053 244 VFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSK 323
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 529217319 323 ILFWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIITLIPLSTLIENKLLK 378
Cdd:MTH00053 324 ILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
5-378 7.37e-177

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 496.75  E-value: 7.37e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   5 RKTHPLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQIL 324
Cdd:MTH00224 246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 529217319 325 FWALVADLITLTWIGGQPVEYPFVTIGQTASVMYFLIIItLIPLSTLIENKLLK 378
Cdd:MTH00224 326 FWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFI-ISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
5-374 3.51e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 388.53  E-value: 3.51e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   5 RKTHPLAKIinNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHA 84
Cdd:MTH00033   4 RKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  85 NGASMFFICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWI 164
Cdd:MTH00033  82 NGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWI 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 165 WGGFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:MTH00033 162 WGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGI 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 245 FS--PDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQ 322
Cdd:MTH00033 242 EPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGK 321
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 529217319 323 ILFWALVADLITLTWIGGQPV-EYPFVTIGQTASVMYFLIIITLIPLSTLIEN 374
Cdd:MTH00033 322 FFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-373 8.10e-130

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.59  E-value: 8.10e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   1 MTTPRKTHPLAKIIN---------NSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIAR 71
Cdd:COG1290    1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  72 DVNYGWMIRYLHANGASMFFICLFLHVGRGLYYGSF-----LsleTWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVI 146
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 147 TNLLSAIPYIGSSLVEWIWGGFSVDKATLTRFFTFH-FILPFIIAALATIHLLFLHDTGSSNPSG----MTSDPDKITFH 221
Cdd:COG1290  158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFH 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 222 PYYTIKDIFGLILLLLCLMNLTLFSPDLltDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSIL 299
Cdd:COG1290  238 PYYTVKDGFGFFVFLGVFALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 529217319 300 ILVAFPTLHLSKQQSMKFRPIAQILFWALVADLITLTWIGGQPVEYpfVTIGQTASVMYFLIIITLIPLSTLIE 373
Cdd:COG1290  316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
12-365 1.20e-121

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 355.79  E-value: 1.20e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  12 KIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  92 ICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVD 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 172 KATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGlILLLLCLMNLTLFSPDLLT 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 252 DPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRpiaQILFWALVAD 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLN---KFLVFSFIVV 316
                        330       340       350
                 ....*....|....*....|....*....|....
gi 529217319 332 LITLTWIGGQPVEYPFVTIGQTASVMYFLIIITL 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
CYTB MTH00046
cytochrome b; Validated
12-364 4.61e-98

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 295.35  E-value: 4.61e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  12 KIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFF 91
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  92 ICLFLHVGRGLYYGSFLSLETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVD 171
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 172 KATLTRFFTFHFILPFIIAALATIHLLFLHDTGSSNP-SGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTLFSPDLL 250
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 251 TDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALVLSILILVAFPTLHLSKQQSMkfrpIAQILFWALVA 330
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVS 317
                        330       340       350
                 ....*....|....*....|....*....|....
gi 529217319 331 DLITLTWIGGQPVEYPFVTIGQTASVMYFLIIIT 364
Cdd:MTH00046 318 LFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
9-206 3.06e-97

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 287.73  E-value: 3.06e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   9 PLAKIINNSLIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  89 MFFICLFLHVGRGLYYGSFLS--LETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 529217319 167 GFSVDKATLTRFFTFHFILPFIIAALATIHLLFLHDTGSS 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 6.84e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 260.78  E-value: 6.84e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   18 LIDLPSPSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   98 VGRGLYYGSFLSL--ETWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
                         170       180
                  ....*....|....*....|....*....
gi 529217319  176 TRFFTFHFILPFIIAALATIHLLFLHDTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
207-354 5.39e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.04  E-value: 5.39e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 207 NPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTLFSPDLLTDPDNYTLANPLNTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 529217319 287 KLGGVLALVLSILILVAFPTLHLSKQQSMkFRPIAQILFWALVADLITLTWIGGQPVEYPFVTIGQTA 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-358 2.10e-45

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 151.09  E-value: 2.10e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTLHLSKQQSMKFRPIAQILFWALVADLITLTWI 338
Cdd:pfam00032   2 ANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWL 81
                          90       100
                  ....*....|....*....|
gi 529217319  339 GGQPVEYPFVTIGQTASVMY 358
Cdd:pfam00032  82 GKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
33-208 1.37e-43

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 150.63  E-value: 1.37e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  33 FGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFFICLFLHVGRGLYYGSFLSLE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 112 -TWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVDKATLTRFFTFH-FILPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
                        170
                 ....*....|....*....
gi 529217319 190 AALATIHLLFLHDTGSSNP 208
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
24-209 1.65e-40

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 142.55  E-value: 1.65e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  24 PSNISAWWNFGSLLGICLIIQIATGLFLAMHYTPDTSTAFSSVAHIARDVNYGWMIRYLHANGASMFFICLFLHVGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 104 YGSFLSLE--TWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIWGGFSVDKATLTRFFTF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
                        170       180
                 ....*....|....*....|....*....
gi 529217319 182 H-FILPFIIAALATIHLLFLHDTGSSNPS 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 5.05e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 136.99  E-value: 5.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319   88 SMFFICLFLHVGRGLYYGSFLSLE--TWNVGIILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSSLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  166 GGFSVDKATLTRFFTFHF-ILPFIIAALATIHLLFLHDTGSSNPSGMTSDPDKITFHPYYTIKDIFGLILLLLCLMNLTL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160

                  ....*....
gi 529217319  245 FSPDLLTDP 253
Cdd:pfam13631 161 INPIWLGGP 169
petD CHL00058
cytochrome b6/f complex subunit IV
259-339 2.55e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.47  E-value: 2.55e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTL-HLSKQQSMKFRPIAQILFwaLVADLITLtW 337
Cdd:CHL00058  66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTVF--LIGTAVAL-W 142

                 ..
gi 529217319 338 IG 339
Cdd:CHL00058 143 LG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
259-339 9.53e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 57.11  E-value: 9.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319 259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTL-HLSKQQSMKFRPIAQILFwaLVADLITLtW 337
Cdd:COG5679   67 ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPVATAVF--LFGTLVTL-W 143

                 ..
gi 529217319 338 IG 339
Cdd:COG5679  144 LG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
259-339 3.32e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 529217319  259 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILVAFPTL-HLSKQQSMKFRPIAQILFwaLVADLITLtW 337
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF--LFGTVVAL-W 142

                  ..
gi 529217319  338 IG 339
Cdd:TIGR01156 143 LG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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