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Conserved domains on  [gi|682124504|ref|YP_009056816|]
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DUF5417 domain-containing protein [Escherichia phage vB_EcoM_PhAPEC2]

Protein Classification

DUF5417 domain-containing protein( domain architecture ID 13879857)

DUF5417 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5417 pfam17438
Family of unknown function (DUF5417); This is a family of unknown function found in ...
 1-79 9.59e-40

Family of unknown function (DUF5417); This is a family of unknown function found in Proteobacteria.


:

Pssm-ID: 465425  Cd Length: 91  Bit Score: 126.11  E-value: 9.59e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 682124504   1 MRLQRQSIK-DSEVRGKWYFNVVGKDAELLEQAEEALREM-----------GWNEECDGCPLYEDGESAGFWIHHSDVES 68
Cdd:pfam17438  1 MKLQRESIKlGSEYRGKWYFCIEGKNPEELEAAEEILRAMetgfslggeqvTWNDYCDGCPCYEDGFGSGFWIDISDVEA 80

                         90
                 ....*....|.
gi 682124504  69 FKADWKVVKKN 79
Cdd:pfam17438 81 FKAAWKIAKAK 91
 
Name Accession Description Interval E-value
DUF5417 pfam17438
Family of unknown function (DUF5417); This is a family of unknown function found in ...
 1-79 9.59e-40

Family of unknown function (DUF5417); This is a family of unknown function found in Proteobacteria.


Pssm-ID: 465425  Cd Length: 91  Bit Score: 126.11  E-value: 9.59e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 682124504   1 MRLQRQSIK-DSEVRGKWYFNVVGKDAELLEQAEEALREM-----------GWNEECDGCPLYEDGESAGFWIHHSDVES 68
Cdd:pfam17438  1 MKLQRESIKlGSEYRGKWYFCIEGKNPEELEAAEEILRAMetgfslggeqvTWNDYCDGCPCYEDGFGSGFWIDISDVEA 80

                         90
                 ....*....|.
gi 682124504  69 FKADWKVVKKN 79
Cdd:pfam17438 81 FKAAWKIAKAK 91
 
Name Accession Description Interval E-value
DUF5417 pfam17438
Family of unknown function (DUF5417); This is a family of unknown function found in ...
 1-79 9.59e-40

Family of unknown function (DUF5417); This is a family of unknown function found in Proteobacteria.


Pssm-ID: 465425  Cd Length: 91  Bit Score: 126.11  E-value: 9.59e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 682124504   1 MRLQRQSIK-DSEVRGKWYFNVVGKDAELLEQAEEALREM-----------GWNEECDGCPLYEDGESAGFWIHHSDVES 68
Cdd:pfam17438  1 MKLQRESIKlGSEYRGKWYFCIEGKNPEELEAAEEILRAMetgfslggeqvTWNDYCDGCPCYEDGFGSGFWIDISDVEA 80

                         90
                 ....*....|.
gi 682124504  69 FKADWKVVKKN 79
Cdd:pfam17438 81 FKAAWKIAKAK 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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