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Conserved domains on  [gi|937408794|ref|YP_009166994|]
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ATP synthase F0 subunit 6 (mitochondrion) [Choloepus hoffmanni]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009564)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 3.20e-131

ATP synthase F0 subunit 6; Validated


:

Pssm-ID: 177163  Cd Length: 226  Bit Score: 368.51  E-value: 3.20e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLIVMFPTLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFIG 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  81 STNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937408794 161 TANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 3.20e-131

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 368.51  E-value: 3.20e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLIVMFPTLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFIG 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  81 STNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937408794 161 TANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-225 1.07e-49

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 161.61  E-value: 1.07e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794    6 FASFMIPTMMGLPIVTLIVMFptLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFIGSTNLL 85
Cdd:TIGR01131  10 ITLFSLTLLSLILLLSLLIFL--ISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   86 GLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRLTANIT 165
Cdd:TIGR01131  88 GLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANIS 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  166 AGHLIMHLTGSATLALMSISPTTafITFIILISLTALEFAVALIQAYVFTLLISLYLHDN 225
Cdd:TIGR01131 168 AGHLLLTLLSGLLFSLMSSAIFA--LLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 6.90e-41

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 136.76  E-value: 6.90e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  65 GQTWSLMLISLITFIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVII 144
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937408794 145 ETISLFIQPTALAVRLTANITAGHLIMHLTGSATLALMSISpttAFITFIILISLTALEFAVALIQAYVFTLLISLYL 222
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSV---GLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
59-223 5.04e-36

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 126.07  E-value: 5.04e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   59 IIHSPKGQTWSLMLISLITFIGSTNLLGLL---PYSFTPTTQLSMNLGMAVPLWAGTVIMGLR-HKTKTSLAHFLPQGTP 134
Cdd:pfam00119  48 NIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGIKkHGLGGYFKKLFVPPVP 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  135 TPLIPMLVIIETISLFIQPTALAVRLTANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVF 214
Cdd:pfam00119 128 LPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVF 207


                  ....*....
gi 937408794  215 TLLISLYLH 223
Cdd:pfam00119 208 TMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 63-224 7.27e-25

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 97.07  E-value: 7.27e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  63 PKGQTWSLMLISLITFIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHK-TKTSLAHFLPQGTPtPLIPML 141
Cdd:COG0356   52 KKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLM 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794 142 VIIETISLFIQPTALAVRLTANITAGHLIMHLtgsatLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLY 221
Cdd:COG0356  131 LPIEIISELARPLSLSLRLFGNMFAGHIILLL-----LAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVY 205


                 ...
gi 937408794 222 LHD 224
Cdd:COG0356  206 ISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 3.20e-131

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 368.51  E-value: 3.20e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLIVMFPTLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFIG 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  81 STNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937408794 161 TANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 2.98e-87

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 257.45  E-value: 2.98e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLIVMFPTLLFPSPS-RLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFI 79
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKnRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  80 GSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVR 159
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937408794 160 LTANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDNT 226
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-226 4.24e-82

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 244.11  E-value: 4.24e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLIVMFPTLLFPSPS-RLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFI 79
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTnKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  80 GSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVR 159
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937408794 160 LTANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDNT 226
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-225 2.60e-81

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 242.09  E-value: 2.60e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLIVMFPTLLFPSPS-RLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFI 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTsRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  80 GSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVR 159
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937408794 160 LTANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDN 225
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 4.84e-71

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 216.35  E-value: 4.84e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLIVMFPTLLFPSP-SRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFI 79
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLtNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  80 GSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVR 159
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937408794 160 LTANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDNT 226
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-221 2.81e-50

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 163.03  E-value: 2.81e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLIVMFPTLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFIG 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  81 STNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRL 160
Cdd:MTH00157  81 FNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937408794 161 TANITAGHLIMHLTGSatlALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLY 221
Cdd:MTH00157 161 AANMIAGHLLLTLLGN---TGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLY 218
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-225 1.07e-49

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 161.61  E-value: 1.07e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794    6 FASFMIPTMMGLPIVTLIVMFptLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFIGSTNLL 85
Cdd:TIGR01131  10 ITLFSLTLLSLILLLSLLIFL--ISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   86 GLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRLTANIT 165
Cdd:TIGR01131  88 GLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANIS 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  166 AGHLIMHLTGSATLALMSISPTTafITFIILISLTALEFAVALIQAYVFTLLISLYLHDN 225
Cdd:TIGR01131 168 AGHLLLTLLSGLLFSLMSSAIFA--LLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-225 7.27e-47

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 154.75  E-value: 7.27e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLP--IVTLIVMFPTLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITF 78
Cdd:MTH00035   3 INNSIFGQFSPDTILFIPltLLSSVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  79 IGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAV 158
Cdd:MTH00035  83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937408794 159 RLTANITAGHLIMHLTGSATLALMSiSPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDN 225
Cdd:MTH00035 163 RLAANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 6.90e-41

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 136.76  E-value: 6.90e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  65 GQTWSLMLISLITFIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVII 144
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937408794 145 ETISLFIQPTALAVRLTANITAGHLIMHLTGSATLALMSISpttAFITFIILISLTALEFAVALIQAYVFTLLISLYL 222
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSV---GLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 7.99e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 134.00  E-value: 7.99e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGLPIVTLI---VMFPTLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLIT 77
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSwitLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  78 FIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALA 157
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937408794 158 VRLTANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDNT 226
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 5-224 3.12e-38

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 132.30  E-value: 3.12e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   5 LFASFMIPTMMGLPIVTLIVMFPTL---LFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFIGS 81
Cdd:MTH00173   5 LFSSFDDHNSSFSSLSFLMWLLSLMslfFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLIS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  82 TNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRLT 161
Cdd:MTH00173  85 LNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLL 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937408794 162 ANITAGHLIMHLTGSATLA-LMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHD 224
Cdd:MTH00173 165 ANISAGHIVLTLIGNYLSSsLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_A pfam00119
ATP synthase A chain;
59-223 5.04e-36

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 126.07  E-value: 5.04e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   59 IIHSPKGQTWSLMLISLITFIGSTNLLGLL---PYSFTPTTQLSMNLGMAVPLWAGTVIMGLR-HKTKTSLAHFLPQGTP 134
Cdd:pfam00119  48 NIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYGIKkHGLGGYFKKLFVPPVP 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  135 TPLIPMLVIIETISLFIQPTALAVRLTANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVF 214
Cdd:pfam00119 128 LPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVF 207


                  ....*....
gi 937408794  215 TLLISLYLH 223
Cdd:pfam00119 208 TMLTAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-224 8.54e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 118.22  E-value: 8.54e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   1 MNENLFASFMIPTMMGL---PIVTLIVMFPTLLFPSPSRLITNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLIT 77
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLtnsSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  78 FIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALA 157
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937408794 158 VRLTANITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHD 224
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLAD 227
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 4-226 9.33e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 110.59  E-value: 9.33e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794   4 NLFASFMIPTMMGLPIVTLIVMFPTLLFPSPsrlitNRLISIQQQMTNLILKRMMIIHSPKGQTWSLMLISLITFIGSTN 83
Cdd:MTH00005  14 NSLFNNLSSTAFWAFNFSIILLLSSSFWITP-----NRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMN 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  84 LLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRLTAN 163
Cdd:MTH00005  89 LSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAAN 168

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937408794 164 ITAGHLIMHLTGSATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHDNT 226
Cdd:MTH00005 169 MSAGHIVLSLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDDHP 231
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 19-224 4.68e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 106.24  E-value: 4.68e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  19 IVTLIVMFPTLLFPSpSRLITNRLISIQQQMTNLIlkRMMIIHS--PKGQTWSLMLISLITFIGSTNLLGLLPYSFTPTT 96
Cdd:MTH00175  34 MMVLAVIIFWLLLKG-DKLIPNRWQSIMELIYLNI--RSVVHDNlgKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTA 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  97 QLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPTALAVRLTANITAGHLIMH-LTG 175
Cdd:MTH00175 111 HIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAiLSG 190

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 937408794 176 SATLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYLHD 224
Cdd:MTH00175 191 FAFNMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGD 239
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 63-224 7.27e-25

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 97.07  E-value: 7.27e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  63 PKGQTWSLMLISLITFIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHK-TKTSLAHFLPQGTPtPLIPML 141
Cdd:COG0356   52 KKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLM 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794 142 VIIETISLFIQPTALAVRLTANITAGHLIMHLtgsatLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLY 221
Cdd:COG0356  131 LPIEIISELARPLSLSLRLFGNMFAGHIILLL-----LAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVY 205


                 ...
gi 937408794 222 LHD 224
Cdd:COG0356  206 ISL 208
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 64-224 5.91e-21

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 87.69  E-value: 5.91e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  64 KGQTWSLMLISLITFIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVI 143
Cdd:MTH00174  86 KGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTI 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794 144 IETISLFIQPTALAVRLTANITAGHLIMHLTGSATLALMSISPTT-AFITFIILISLTALEFAVALIQAYVFTLLISLYL 222
Cdd:MTH00174 166 IETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAILIFVTILEMAVAIIQAYVFTLLTIVYL 245


                 ..
gi 937408794 223 HD 224
Cdd:MTH00174 246 RD 247
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 64-224 6.21e-21

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 87.16  E-value: 6.21e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  64 KGQTWSLMLISLITFIGSTNLLGLLP-YSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKtktSLAHFLPQGTPTPlIPMLV 142
Cdd:PRK05815  68 KGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLLL 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794 143 IIETISLFIQPTALAVRLTANITAGHLIMHLTGSatlaLMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYL 222
Cdd:PRK05815 144 PIEIISEFSRPISLSLRLFGNMLAGELILALIAL----LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYI 219


                 ..
gi 937408794 223 HD 224
Cdd:PRK05815 220 SM 221
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-222 5.28e-19

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 84.02  E-value: 5.28e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  72 LISLITFIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLR-HKTKTSLAHfLPQGTPTPLIPMLVIIETISLF 150
Cdd:PRK13419 174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKaHGIKGYLAH-LTGGTHWSLWIIMIPIEFIGLF 252

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794 151 IQPTALAVRLTANITAGHLIMhltgsatLALMSI-----SPTTAF---ITFIILISLtaLEFAVALIQAYVFTLLISLYL 222
Cdd:PRK13419 253 TKPFALTVRLFANMTAGHIVI-------LSLIFIsfilkSYIVAVavsVPFAIFIYL--LELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 71-222 4.64e-11

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 59.61  E-value: 4.64e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  71 MLISLITFigstNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSlaHFLPQGTPTPLIPM-LVIIETISL 149
Cdd:MTH00087  58 TFIVLLLF----CFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTFsMLFVEIVSE 131

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937408794 150 FIQPTALAVRLTANITAGHLIMHLTGSATlalmsispttaFITFIILISLTALEFAVALIQAYVFTLLISLYL 222
Cdd:MTH00087 132 LSRPLALTLRLTVNLMVGHLISSLLNFLG-----------EKYVWLSILAIMMECFVAFIQSYIFSRLIYLYL 193
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 93-222 1.43e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 51.04  E-value: 1.43e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  93 TPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPT-ALAVRLTANITAGH-LI 170
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIVSPMAKTfALTVRLLANMTAGHvII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 937408794 171 MHLTGsatLALMSISPTTAFITFIILISLTALEFAVALIQAYVFTLLISLYL 222
Cdd:PRK13417 297 LALMG---FIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 74-222 4.81e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 37.03  E-value: 4.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937408794  74 SLITFIGSTNLLGLLPYSFTPTTQLSMNLGMAVPLWAGTVIMGLRHKTKTS-LAHFLpqgTPTP-LIPMLVIIEtislFI 151
Cdd:PRK13420  80 TLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGIRAEGLREyLKHYL---SPSPfLLPFHLISE----IT 152

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937408794 152 QPTALAVRLTANItaghliMHLTGSATLALMsispttaFITFIILISLTALEFAVALIQAYVFTLLISLYL 222
Cdd:PRK13420 153 RTLALAVRLFGNI------MSLELAALLVLL-------VAGFLVPVPILMLHIIEALVQAYIFGMLALIYI 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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