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Conserved domains on  [gi|1088477774|ref|YP_009311308|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Barboides gracilis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 559.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 TGEWNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNiNPLLLTLLGIT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTQMT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*...
gi 1088477774 321 QTSLPLSIFTMTTLGLLPMTPAIMALIS 348
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALLT 347
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 559.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 TGEWNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNiNPLLLTLLGIT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTQMT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*...
gi 1088477774 321 QTSLPLSIFTMTTLGLLPMTPAIMALIS 348
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALLT 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-300 1.96e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.05  E-value: 1.96e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   4 YVLTILISslgLGTTLTFASSHWLLAWMGLEINTLAITPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTG 82
Cdd:COG1007   105 YALLLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  83 EWNINDLSNPLASTTFTMALAL------------KIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALII------- 143
Cdd:COG1007   182 SLNLAGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveaf 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 144 QTAQNINPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQL----TLMTLGLYIIMTSTAFLTL 219
Cdd:COG1007   262 PGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 220 KML-----MTTKINVLSTTWSKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYL 294
Cdd:COG1007   342 LLLsrkggEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ....*.
gi 1088477774 295 RLCYAM 300
Cdd:COG1007   422 RVVKAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-338 5.97e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 99.25  E-value: 5.97e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   4 YVLTILISSLGLGttLTFASSHWLLAWMGLEINTLAITPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTG 82
Cdd:TIGR01770 104 FYILLLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  83 EWNINDLSNPLASTTFT------------MALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQ------ 144
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRlflyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 145 -TAQNINPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYI----IMTSTAFLTL 219
Cdd:TIGR01770 262 fGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIfiyaLMSLGAFGVL 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 220 KMLMTTK------INVLSTTWSKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFY 293
Cdd:TIGR01770 342 SLLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1088477774 294 LRLCYAMTLTISPntTNLMTSWRTQMTQTSLPLSIFTMTTLGLLP 338
Cdd:TIGR01770 422 LRVVKVMYFDKPE--RRIPSNPQSKAQSLLLSISALFILFLGLFP 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-280 8.30e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.53  E-value: 8.30e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  23 SSHWLLAWMGLEINTLAITPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNINDLSNPLASTT---- 97
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  98 -------FTMALALKIGLAPMHFWMPEVLQGLDLTTGLIL-STWQKLAPFALI-----IQTAQNINPLLLTLLGITSTLI 164
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 165 GGWGGLNQTQLRKILAYSSIAHMGWMVIII----QYMPQLTLMTLGLYIIMTSTAFL-----TLKMLMTTKINVLSTTWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1088477774 236 KNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIAT 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVL 285
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 559.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 TGEWNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNiNPLLLTLLGIT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTQMT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*...
gi 1088477774 321 QTSLPLSIFTMTTLGLLPMTPAIMALIS 348
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALLT 347
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-347 2.56e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 421.64  E-value: 2.56e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 TGEWNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPLLLTLLGIT 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTQmT 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-N 319

                         330       340
                  ....*....|....*....|....*..
gi 1088477774 321 QTSLPLSIFTMTTLGLLPMTPAIMALI 347
Cdd:MTH00070  320 KTNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-347 5.74e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 372.62  E-value: 5.74e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 TGEWNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPLLLTLLGIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTQMT 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*..
gi 1088477774 321 QTSLpLSIFTMTTLGLLPMTPAIMALI 347
Cdd:MTH00112  321 KNTL-TATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 6.32e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 349.53  E-value: 6.32e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 TGEWNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPLLLTLLGIT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTQMT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*.
gi 1088477774 321 QTSLPLSIFTMTTLGLLPMTPAIMAL 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-347 2.15e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 333.09  E-value: 2.15e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 TGEWNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPLLLTLLGIT 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTqMT 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRT-KS 319

                         330       340
                  ....*....|....*....|....*..
gi 1088477774 321 QTSLPLSIFTMTTLGLLPMTPAIMALI 347
Cdd:MTH00200  320 NSNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-339 6.70e-94

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 283.36  E-value: 6.70e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 TGEWNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPLLLTLLGIT 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTQMT 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|..
gi 1088477774 321 QTSLPL---SIFTMTTLGLLPM 339
Cdd:MTH00041  321 ITVYGVilsILSSISILGLLLI 342
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-344 5.68e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 175.01  E-value: 5.68e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   1 MNPYVLTILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  81 tgewniNDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIiqtAQNINPLLLTLLGIT 160
Cdd:MTH00160   82 ------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPIL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 241 MVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMtLTISPNTTNLMTSWRTQMT 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|....
gi 1088477774 321 QTSLPLSIFtMTTLGLLPMTPAIM 344
Cdd:MTH00160  312 SLILNFLSF-ISLFGLILSSLLFL 334
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-302 2.21e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 157.74  E-value: 2.21e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  13 LGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNIndlsnp 92
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS------ 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  93 laSTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPL-LLTLLGITSTLIGGWGGLN 171
Cdd:MTH00144   87 --MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 172 QTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIImtSTAFLTLKMLMTTKINVLSTTWSKNPILM-VTTALALLS 250
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIV--SSGFLFFSLWSGDSGSMKDLGSLKPSYKTgLSIISLLLS 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1088477774 251 LGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTL 302
Cdd:MTH00144  243 LGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 11-338 6.13e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 148.77  E-value: 6.13e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  11 SSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFAsttnawMTGEWNINDLS 90
Cdd:MTH00011   13 STMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMWSFPSLL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  91 NPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPLLLTLLGITSTLIGGWGGL 170
Cdd:MTH00011   87 KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGM 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 171 NQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPILMVTTALALLS 250
Cdd:MTH00011  167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 251 LGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTlTISPNTTNLMTSWRTQMTQtsLPLSIFT 330
Cdd:MTH00011  247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSAPYEPKTK--ILISMCT 323


                  ....*...
gi 1088477774 331 MtTLGLLP 338
Cdd:MTH00011  324 L-SLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-298 5.04e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.96  E-value: 5.04e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   8 ILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAwmtgewnIN 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  88 DLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPfaLIIQTAQNINPLLLTLLGITSTLIGGW 167
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 168 GGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPILMVTTALA 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1088477774 248 LLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCY 298
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 2.03e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 115.90  E-value: 2.03e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  15 LGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHP-RAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNIN------ 87
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinlvl 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  88 -------DLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPLLltLLGIT 160
Cdd:MTH00196   84 nsgqsfsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILL--IGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 161 STLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMP----QLTLMTLGLYIIMTSTAFLTLKMLMTTK--INVLSTTW 234
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1088477774 235 SKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRL 296
Cdd:MTH00196  242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-300 1.96e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.05  E-value: 1.96e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   4 YVLTILISslgLGTTLTFASSHWLLAWMGLEINTLAITPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTG 82
Cdd:COG1007   105 YALLLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  83 EWNINDLSNPLASTTFTMALAL------------KIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALII------- 143
Cdd:COG1007   182 SLNLAGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveaf 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 144 QTAQNINPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQL----TLMTLGLYIIMTSTAFLTL 219
Cdd:COG1007   262 PGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 220 KML-----MTTKINVLSTTWSKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYL 294
Cdd:COG1007   342 LLLsrkggEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ....*.
gi 1088477774 295 RLCYAM 300
Cdd:COG1007   422 RVVKAM 427
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-296 3.06e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 105.87  E-value: 3.06e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   8 ILISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  87 NDLSNPLASTT----FTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINPLLLTllGITST 162
Cdd:MTH00199  181 QGINSILTGDVgkilITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 163 LIGGWGGLNQTQLRKILAYSSIAHMG---WMVIIIQYMP-QLTLMTLGLYIIMTSTAFLTLKMLMTTK--INVLSTTWSK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 237 NPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRL 296
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-338 5.97e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 99.25  E-value: 5.97e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   4 YVLTILISSLGLGttLTFASSHWLLAWMGLEINTLAITPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTG 82
Cdd:TIGR01770 104 FYILLLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  83 EWNINDLSNPLASTTFT------------MALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQ------ 144
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRlflyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 145 -TAQNINPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYI----IMTSTAFLTL 219
Cdd:TIGR01770 262 fGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIfiyaLMSLGAFGVL 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 220 KMLMTTK------INVLSTTWSKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFY 293
Cdd:TIGR01770 342 SLLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1088477774 294 LRLCYAMTLTISPntTNLMTSWRTQMTQTSLPLSIFTMTTLGLLP 338
Cdd:TIGR01770 422 LRVVKVMYFDKPE--RRIPSNPQSKAQSLLLSISALFILFLGLFP 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-280 8.30e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.53  E-value: 8.30e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  23 SSHWLLAWMGLEINTLAITPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNINDLSNPLASTT---- 97
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  98 -------FTMALALKIGLAPMHFWMPEVLQGLDLTTGLIL-STWQKLAPFALI-----IQTAQNINPLLLTLLGITSTLI 164
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 165 GGWGGLNQTQLRKILAYSSIAHMGWMVIII----QYMPQLTLMTLGLYIIMTSTAFL-----TLKMLMTTKINVLSTTWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1088477774 236 KNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIAT 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVL 285
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-339 2.21e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 91.81  E-value: 2.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   4 YVLtILISSLGLgttLTFASS-HWLLAWMGLEINTLAITPLMAQH-HHPRAVEATTKYFLTQATAAAMILFASTTNAWMT 81
Cdd:PRK05777  106 YLL-VLFALLGM---MVMVSAnDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGAT 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  82 GEWNINDLSNPLASTT------------FTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALII------ 143
Cdd:PRK05777  182 GSLSFAGIAKALADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvva 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 144 -QTAQNINPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYIIM---TSTAFLTL 219
Cdd:PRK05777  262 fGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAylfMTLGAFGV 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 220 KMLM------TTKINVLSTTWSKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFY 293
Cdd:PRK05777  342 ISLLrrkggeAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1088477774 294 LRLCYAMTLtiSPNTTNLMTSWRTQMTQTSLPLSIFTMTTLGLLPM 339
Cdd:PRK05777  422 LRVIKLMYF--DEPPRDAPVNWPLSAGGAVLSVSALLVLVLGIFPQ 465
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-300 1.32e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.35  E-value: 1.32e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  15 LGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNINDLSNPLA 94
Cdd:COG0651   118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLA 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  95 STT----------FTMALALKIGLAPMHFWMPE-----------VLQGLDLTTGL--ILSTWQKLAPFALIIQTAqninp 151
Cdd:COG0651   198 ELDpglllaafalLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG----- 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 152 LLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYII----MTSTAFLT----LKMLM 223
Cdd:COG0651   273 TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAagaiERATG 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1088477774 224 TTKINVLSTTWSKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAM 300
Cdd:COG0651   353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-192 2.11e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.12  E-value: 2.11e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   9 LISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAV---------EATTKYFLTQATAAAMILFASTTNAW 79
Cdd:MTH00198  193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  80 MTGE--------------WNINDLSNPLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILSTWQKLAPFALIiqT 145
Cdd:MTH00198  273 FTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--T 350

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1088477774 146 AQNINPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVI 192
Cdd:MTH00198  351 SLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-300 6.54e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 63.45  E-value: 6.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  44 MAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNINDLS----------------NPLASTTFTMALAL--- 104
Cdd:PRK12667  154 AYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSakirglsfpltgglagNPPLALGVALALALwaf 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 105 --KIGLAPMHFWMPEV-----------LQGLDLTTG---------LILSTWQKLAPFALIIQtaqninpLLLTLLGITST 162
Cdd:PRK12667  234 tiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALS-------PILIILGAVSA 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 163 LIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYI----IMTSTAFLTLKMLM----TTKINVLSTTW 234
Cdd:PRK12667  307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaIAKSLLFLASGVFIhaagTRDIDELAGLG 386

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1088477774 235 SKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAM 300
Cdd:PRK12667  387 RKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-300 7.22e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 62.97  E-value: 7.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  33 LEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNINDLSNPLASTT--------FTMALAL 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENPtvvtafgfVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 105 KIGLAPMHFWMPEVLQGLDLTTGLILS-TWQKLAPFALI----------IQTAQNINPLLLTLlGITSTLIGGWGGLNQT 173
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALIriyftvfggdFRFALGLGWLLAVL-ALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 174 QLRKILAYSSIAHMGWMVIIIQYMPQLTLMTLGLYI----IMTSTAFLTLKMLM----TTKINVLSTTWSKNPILMVTTA 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAGAIEvtygTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1088477774 246 LALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAM 300
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRA 428
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 6.06e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 51.49  E-value: 6.06e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1088477774 291 YFYLRLCYAMTLTISPNTTNLMTSWRTQMTQTSLPLSIFTMTTLGLLPMTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.83e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 55.83  E-value: 1.83e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  50 PRAVEATTKYFLTQATAAAMILF-ASTTNAWMTGEWNINDLSNPLA-STTFTMALAL---------KIGLAPMHFWMPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALItSPSLGLALALvfviagiafKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 119 LQGLDLTTGLILSTWQKLAPFALIIQTAQNINP-------LLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMV 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 192 I------------IIQYMPQLTLMTLGLYIIMTSTAFLTlkmlMTTKINVLSTTWSKNPILMVTTALALLSLGGLPPLTG 259
Cdd:PRK02504  317 IglvagteagyasMVFYLLAYLFMNLGAFACVILFSLRT----GTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                  ....
gi 1088477774 260 FMPK 263
Cdd:PRK02504  393 FFGK 396
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-302 6.41e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 54.23  E-value: 6.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   2 NPYVLTILISSLGLgttltFASSHWLLAWMGLEINTLAiTPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMT 81
Cdd:PRK08668  101 NMFALMSLAGVLGV-----FLANDLLTLYIFWEIMTFS-SFMMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  82 GEWNINDLSNPL---ASTTFTMALAL--------KIGLAPMHFWMPEVLQGLDLTTGLILS-TWQKLAPFALIIQTA--- 146
Cdd:PRK08668  175 GTFDFADISQGLindTSTGFALIVFLfllafgvaKAGIFPLHVWAPDAYSEAPQSFSAVLSgQLSKLGAYGFLLVLYvlp 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 147 -----------QNINPL--LLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLmTLGLYIIMTS 213
Cdd:PRK08668  255 gtklfsefgtyRGVPLFnyILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGF-AGGLFHVFNH 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 214 TAFLTLKMLM---------TTKINVLSTTWSKNPILMVTTALALLSLGGLPPLTGFMPKWLILQELTKQDMPIIATMMAM 284
Cdd:PRK08668  334 ALFKGLFFLIfaaviyrtgTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFF 413

                         330
                  ....*....|....*...
gi 1088477774 285 AALISLYFYLRLCYAMTL 302
Cdd:PRK08668  414 GSIGSFLYVFRPLAGVFL 431
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-343 1.90e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 52.31  E-value: 1.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  51 RAVEATTKYFLTQATAAAMILFASTtnaWM----TGEWNINDLSNPLASTTF-------------TMALALKIGLAPMHF 113
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFS---WLyglsGGEIELQEIVNGLINTQMynspgisialifiTVGIGFKLSLAPFHQ 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 114 WMPEVLQGLDLTTGLILSTWQKLAPFALIIQTAQNINP-------LLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAH 186
Cdd:CHL00049  236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 187 MGWMVIII-------QYMPQLTLMTLglYIIMTSTAF--LTLKMLMTTKINV--LSTTWSKNPILMVTTALALLSLGGLP 255
Cdd:CHL00049  316 IGYVIIGIivgdsndGYASMITYMLF--YIFMNLGTFacIVLFGLRTGTDNIrdYAGLYTKDPFLALSLALCLLSLGGIP 393

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 256 PLTGFMPKWLILQELTKQDMPIIATMMAMAALISLYFYLRLCYAMTLTISPNTTNLMTSWRTQ--MTQTSLPLSI----F 329
Cdd:CHL00049  394 PLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLLMTGRNQEITPYVRNYRRSplRSNNSIELSMivcvI 473

                         330
                  ....*....|....
gi 1088477774 330 TMTTLGLLpMTPAI 343
Cdd:CHL00049  474 ASTIPGIS-MNPII 486
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 8.41e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 50.46  E-value: 8.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  49 HPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEW--NINDLSN-PLASTT-------FTMALALKIGLAPMHFWMPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaPLPLTAqlllflaFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 119 LQ-----GLDLTTGLILstwqKLAPFALI-------IQTAQNINPLLLTLlGITSTLIGGWGGLNQTQLRKILAYSSIAH 186
Cdd:COG1008   236 HVeaptaGSVLLAGVLL----KMGGYGLLrfalplfPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSH 310


                  ....*.
gi 1088477774 187 MGWMVI 192
Cdd:COG1008   311 MGFVLL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 2.17e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 49.17  E-value: 2.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  50 PRAVEATTKYFLTQATAAAMILFASTTNAWMTGE-WNINDLSN-PLASTT-------FTMALALKIGLAPMHFWMPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELLNlPLPFGVqtwlflaFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 120 QGLDLTTGLILSTWQKLAPFALI------IQTAQNINPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVII 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLrfnlplFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311


                  .
gi 1088477774 194 I 194
Cdd:TIGR01972 312 I 312
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-300 3.22e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.55  E-value: 3.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  33 LEINTLAITPLMAQHHH-PRAVEATTKYFLTQATAAAMILFA---------STTNAWMTGEWNIN-DLSNPLASTTFTMA 101
Cdd:PRK08376  150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENpTVVAKIALALFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 102 LALKIGLAPMHFWMPEVLQGL--DLTTGLILSTWQKLAPFALIIQT--AQNINPL----LLTLLGITSTLIGGWGGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 174 QLRKILAYSSIAHMGWMVI-----IIQYMPQL------TLMTLGLY-----IIMTSTAFLTLKMLM----TTKINVLSTT 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMLLglgvgLAALGDPAmasygeIALAGGIYhivnhALYKALLFLTAGAVIyetgTRNLNELGGL 389

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1088477774 234 WSKNPILMVTTALALLSLGGLPPLTGFMPKWLILqELTKQDMPIIATMMAMAALISLYFYLRLCYAM 300
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIY-ESSALFNPILGVIAMIGSVLTLASFVKVFHTA 455
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 17-194 1.55e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.67  E-value: 1.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  17 TTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATA------AAMILFASTTNAWMTGEWNINDLS 90
Cdd:PRK08676  115 ITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELA 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  91 NP----------LASTTFTMALALKIGLAPMHFWMPE-----------VLQGLDLTTGLilstWQKLAPFALIIQT-AQN 148
Cdd:PRK08676  195 AHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGI----YGILRLSALLRQSgAAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1088477774 149 INPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIII 194
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
9-192 2.34e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.85  E-value: 2.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   9 LISSLGLGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWNINd 88
Cdd:PRK06473  112 LLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFD- 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  89 lSNPLASTTFTMA------------LALKIGLAPMHFWMPE-----------VLQG--LDLTT--------GLILSTWQK 135
Cdd:PRK06473  191 -YEPLRSHTLPLStqllllapilvgFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPEAWVY 269

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1088477774 136 LAPFaliiqtaqninpllLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVI 192
Cdd:PRK06473  270 LAPW--------------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-194 1.41e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 43.37  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 100 MALALKIGLAPMHFWMPEV-----LQGLDLTTGLILstwqKLAPFALIIQT-------AQNINPLLLTLlGITSTLIGGW 167
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSwpilplgAQNLAPAVIAM-GIVGIVYGSF 312

                          90       100
                  ....*....|....*....|....*..
gi 1088477774 168 GGLNQTQLRKILAYSSIAHMGWMVIII 194
Cdd:MTH00226  313 ATCRQIDVKRLVAYSSVAHMGLVSITL 339
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 1.47e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.27  E-value: 1.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  50 PRAVEATTKYFL-TQATAAAM---ILFASTTNAWMTGEWNINDL-SNPLASTT-------FTMALALKIGLAPMHFWMPE 117
Cdd:PRK05846  157 KNRIYAATKFFLyTLLGSLLMlvaIIYLVVVYYNATGTFDIADLlNLPLPPGVqywlflaFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 118 VLQ-----GLDLTTGLILstwqKLAPFALI-------IQTAQNINPLLLTLlGITSTLIGGWGGLNQTQLRKILAYSSIA 185
Cdd:PRK05846  237 AHVqaptaGSVLLAGILL----KMGAYGLLrfslplfPDASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSSIS 311


                  ....*....
gi 1088477774 186 HMGWMVIII 194
Cdd:PRK05846  312 HMGFVTLGI 320
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 19-192 1.64e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.38  E-value: 1.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  19 LTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFAS----------TTNAWMTGEW-NIN 87
Cdd:PRK06458  123 LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELL 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  88 DLSNPLASTTFTMALAL-------KIGLAPMHFWMPE-----------VLQGLDLTTGLilstwqklapFALI---IQTA 146
Cdd:PRK06458  203 KHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVAL----------YAVLryyILID 272

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1088477774 147 QNINPL----LLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVI 192
Cdd:PRK06458  273 AAIGSDfpgrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 98-194 3.95e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 41.96  E-value: 3.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  98 FTMALALKIGLAPMHFWMPE-----------VLQGLDLTTG---LILSTWqklapfALIIQTAQNINPLLLTLlGITSTL 163
Cdd:MTH00217  212 FFLSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKLGgygFIRFSW------PLLPEASEYFSPLIQTL-SLLAII 284

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1088477774 164 IGGWGGLNQTQLRKILAYSSIAHMGWMVIII 194
Cdd:MTH00217  285 YGSLTTCRQVDLKRIIAYSSVAHMGLVTLGI 315
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 19-194 4.91e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 4.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  19 LTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGE--WNINDLSNP---- 92
Cdd:PRK12561  102 GVFLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKsypl 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  93 ----LASTTFTMALALKIGLAPMHFWMPE-----------VLQGLDLTTG---LILSTWQKLaPFALIIqtaqnINPLLL 154
Cdd:PRK12561  182 alelLLYAGFLIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgyaLIRFNVQML-PDAHVY-----FAPALA 255

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1088477774 155 TLlGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIII 194
Cdd:PRK12561  256 IL-GVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-194 1.24e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.71  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 111 MHFWMPEVLQGLDLTTGLILSTWQKLAPFALIIQT-----AQNINPLLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIA 185
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323


                  ....*....
gi 1088477774 186 HMGWMVIII 194
Cdd:MTH00032  324 QLGYMVLII 332
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
4-192 2.07e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.70  E-value: 2.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   4 YVLTILISSlglGTTLTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGE 83
Cdd:PRK07363  110 YSLILLING---GIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGS 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  84 WNINDLSNPLASTTFTMALAL----------KIGLAPMHFWMPEVLQGLDLTTGLILS-TWQKLAPFALI-------IQT 145
Cdd:PRK07363  187 TSFDYDAISTQNLSLNTQLILltglllgfgiKIPLVPLHTWLPDAYTEASPAVAILLGgVLAKLGTYGLLrfglqlfPQT 266

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1088477774 146 AQNINPLLLTLlGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVI 192
Cdd:PRK07363  267 WSLVAPGLAII-GTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILV 312
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-194 4.16e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.14  E-value: 4.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  80 MTGEWNINDL-SNPLASTTFTMALAL-------KIGLAPMHFWMPE-----------------VLQGLDLTTglilstwq 134
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaaptpvsaylhaaamVKAGIYLVA-------- 254

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1088477774 135 KLAP-FAliiqTAQNINPLLLTLlGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVIII 194
Cdd:PRK12644  255 RLAPgFA----DVPVWRPTVLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-271 5.27e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 38.39  E-value: 5.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774   6 LTILISSLGLgttlTFASSHWLLAWMGLEINTLAITPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWMTGEWN 85
Cdd:PRK07234  100 LLILHGSVNA----AFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFA 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774  86 INDLSN--PLASTTFTMALALKIGLAPMHFWMPEVLQGLDLTTGLILS-TWQKLAPFALI-IQTAQNINPLLLTLLGITS 161
Cdd:PRK07234  176 FSGLATadPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVrCALDVPGLDLIVRIFGVGT 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088477774 162 TLIGGWGGLNQTQLRKILAYSSIAHMGWMVIIIQYMPQLTLMtlglYIIMTSTAFLTLKMLMTTKINVLSTTWSKNPILM 241
Cdd:PRK07234  256 ALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNFTELISQMLGIGKWI 331

                         250       260       270
                  ....*....|....*....|....*....|
gi 1088477774 242 VTTALALLSLGGLPPLtGFMPKWLILQELT 271
Cdd:PRK07234  332 PLTMASFSIAGFPLLA-GFVSKVLTLKNLL 360
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 152-192 7.11e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.21  E-value: 7.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1088477774 152 LLLTLLGITSTLIGGWGGLNQTQLRKILAYSSIAHMGWMVI 192
Cdd:COG1009   276 TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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