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Conserved domains on  [gi|1133407008|ref|YP_009338013|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Amazona aestiva]

Protein Classification

ND4L family protein( domain architecture ID 10009575)

ND4L family protein

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.93e-42

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177184  Cd Length: 98  Bit Score: 133.43  E-value: 2.93e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00125   1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                         90
                 ....*....|....*...
gi 1133407008 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00125  81 TTRTHGSDHLKNLNLLQC 98
 
Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.93e-42

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 133.43  E-value: 2.93e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00125   1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                         90
                 ....*....|....*...
gi 1133407008 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00125  81 TTRTHGSDHLKNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-98 2.09e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 60.27  E-value: 2.09e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008 11 AFTLSSLGLAFHRaHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVASTRTHGSDNL 90
Cdd:pfam00420  9 LFLIGLYGLLLRR-NLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*...
gi 1133407008 91 QNLNLLQC 98
Cdd:pfam00420 88 DSLNLLKG 95
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-96 5.21e-05

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 38.51  E-value: 5.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFtLSSLGL--AFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAML 78
Cdd:COG0713    1 IPLEHYLILAAI-LFAIGLygVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAII 79

                         90
                 ....*....|....*...
gi 1133407008 79 VASTRTHGSDNLQNLNLL 96
Cdd:COG0713   80 VALYRNRGTIDVDDLNEL 97
 
Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.93e-42

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 133.43  E-value: 2.93e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00125   1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                         90
                 ....*....|....*...
gi 1133407008 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00125  81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-98 6.10e-38

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 122.40  E-value: 6.10e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00067   1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVA 80

                         90
                 ....*....|....*...
gi 1133407008 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00067  81 TTRTHGTDHLKNLNLLQC 98
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.03e-37

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 122.00  E-value: 1.03e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00126   1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                         90
                 ....*....|....*...
gi 1133407008 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00126  81 TARTHGTDRLQNLNLLQC 98
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-98 9.32e-24

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 86.52  E-value: 9.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00107   1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPIILLVFAACEAAVGLALLVM 80

                         90
                 ....*....|....*...
gi 1133407008 81 STRTHGSDNLQNLNLLQC 98
Cdd:MTH00107  81 VSNTYGTDYVQNLNLLQC 98
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 4-96 5.85e-20

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 76.91  E-value: 5.85e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  4 LHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVASTR 83
Cdd:MTH00181   1 MMFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNR 80

                         90
                 ....*....|...
gi 1133407008 84 THGSDNLQNLNLL 96
Cdd:MTH00181  81 THGSDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-97 1.87e-16

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 68.02  E-value: 1.87e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVA 80
Cdd:MTH00043   1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                         90
                 ....*....|....*..
gi 1133407008 81 STRTHGSDNLQNLNLLQ 97
Cdd:MTH00043  81 LSRNHNSDLVASLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-98 2.09e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 60.27  E-value: 2.09e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008 11 AFTLSSLGLAFHRaHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVASTRTHGSDNL 90
Cdd:pfam00420  9 LFLIGLYGLLLRR-NLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*...
gi 1133407008 91 QNLNLLQC 98
Cdd:pfam00420 88 DSLNLLKG 95
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 6-98 1.42e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 50.36  E-value: 1.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  6 LSFYSAFTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVEnqTPSLALTPIFMLAFSACEAGTGLAMLVASTRTH 85
Cdd:MTH00188   7 LVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSY--MEKELYLSLVLLTFAACEASVGLALLVSLIRSH 84

                         90
                 ....*....|...
gi 1133407008 86 GSDNLQNLNLLQC 98
Cdd:MTH00188  85 GSDYVSSLNLIKC 97
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 12-92 1.28e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 42.45  E-value: 1.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALtpIFMLAFSACEAGTGLAMLVASTRTHGSDNLQ 91
Cdd:MTH00162  11 FFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFL--LFFLTFSVCEGALGLSILVSMIRSHGNDYFS 88


                 .
gi 1133407008 92 N 92
Cdd:MTH00162  89 S 89
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 12-97 1.63e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 42.33  E-value: 1.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVASTRTHGSDNLQ 91
Cdd:MTH00180  13 FILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAVK 92


                 ....*.
gi 1133407008 92 NLNLLQ 97
Cdd:MTH00180  93 SLNLLR 98
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 12-98 4.51e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 41.37  E-value: 4.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIAL-STWPVENQTPSLALtpiFMLAFSACEAGTGLAMLVASTRTHGSDNL 90
Cdd:MTH00149  13 FLMGVFALLFQYKHLLSILLSLEALMLSLLVMMfSSSGLISFSSYLFL---IILTFGACEASLGLSLLVSLIRLHGNDYV 89


                 ....*...
gi 1133407008 91 QNLNLLQC 98
Cdd:MTH00149  90 SSLSSLKF 97
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 12-97 1.82e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 39.66  E-value: 1.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVASTRTHGSDNLQ 91
Cdd:MTH00001  13 FLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISLK 92


                 ....*.
gi 1133407008 92 NLNLLQ 97
Cdd:MTH00001  93 SLNSLR 98
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-96 3.08e-05

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 39.00  E-value: 3.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008   1 MPLLHLSFYSA--FTLSSLGLaFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAML 78
Cdd:PRK05715    2 IPLQHYLILAAilFCIGLVGL-LLRRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAIL 80

                          90
                  ....*....|....*...
gi 1133407008  79 VASTRTHGSDNLQNLNLL 96
Cdd:PRK05715   81 LQLYRNRGTIDVDDLNEL 98
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 12-98 3.30e-05

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 38.96  E-value: 3.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008 12 FTLSSLGLAFHRAHFISALLCLESMMLSMYIaLSTWPVENQTPSLALTPIFMLAFSACEAGTGLAMLVASTRTHGSDNLQ 91
Cdd:MTH00013  12 PFISMFNLSLQRKHLLMSLLSLEAMILSLAL-FIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLMTRSYGNDMLK 90


                 ....*..
gi 1133407008 92 NLNLLQC 98
Cdd:MTH00013  91 SLTSNKC 97
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-96 5.21e-05

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 38.51  E-value: 5.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133407008  1 MPLLHLSFYSAFtLSSLGL--AFHRAHFISALLCLESMMLSMYIALSTWPVENQTPSLALTPIFMLAFSACEAGTGLAML 78
Cdd:COG0713    1 IPLEHYLILAAI-LFAIGLygVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAII 79

                         90
                 ....*....|....*...
gi 1133407008 79 VASTRTHGSDNLQNLNLL 96
Cdd:COG0713   80 VALYRNRGTIDVDDLNEL 97
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 59-98 6.63e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 36.86  E-value: 6.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1133407008  59 TPIFMLAFSACEAGTGLAMLVASTRTHGSDNLQNLNLLQC 98
Cdd:MTH00127  393 TLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHT 432
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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