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Conserved domains on  [gi|1215847113|ref|YP_009401366|]
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30S ribosomal protein S15 (chloroplast) [Dendrobium crepidatum]

Protein Classification

30S ribosomal protein S15( domain architecture ID 10000021)

30S ribosomal protein S15 binds the central domain of 16S rRNA and is required for the assembly of the ribosomal small subunit.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-90 1.06e-49

ribosomal protein S15


:

Pssm-ID: 214339  Cd Length: 90  Bit Score: 151.65  E-value: 1.06e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215847113  1 MVKNSFISVITQEEKEENSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLMD 80
Cdd:CHL00027   1 MVKNSFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80

                         90
                 ....*....|
gi 1215847113 81 QLDIREPKTR 90
Cdd:CHL00027  81 QLGIRELKTR 90
 
Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-90 1.06e-49

ribosomal protein S15


Pssm-ID: 214339  Cd Length: 90  Bit Score: 151.65  E-value: 1.06e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215847113  1 MVKNSFISVITQEEKEENSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLMD 80
Cdd:CHL00027   1 MVKNSFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80

                         90
                 ....*....|
gi 1215847113 81 QLDIREPKTR 90
Cdd:CHL00027  81 QLGIRELKTR 90
Ribosomal_S15 pfam00312
Ribosomal protein S15;
15-85 6.63e-21

Ribosomal protein S15;


Pssm-ID: 459756  Cd Length: 81  Bit Score: 78.24  E-value: 6.63e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1215847113 15 KEENSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLMDQLDIR 85
Cdd:pfam00312 11 HPGDTGSPEVQIALLTERINNLTEHLKEHKKDKHSRRGLLKLVGKRRRLLKYLKRKDVERYRYLIEKLGLR 81
RpsO COG0184
Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 10-85 7.31e-20

Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S15P/S13E is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439954  Cd Length: 89  Bit Score: 75.86  E-value: 7.31e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215847113 10 ITQEEKEE----------NSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLM 79
Cdd:COG0184    3 LTKEEKEEiikeygrhegDTGSPEVQIALLTERINNLTEHLKEHKKDHHSRRGLLKMVGKRRRLLDYLKKKDIERYRALI 82


                 ....*.
gi 1215847113 80 DQLDIR 85
Cdd:COG0184   83 AKLGLR 88
S15_bact TIGR00952
ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically ...
 15-85 1.47e-14

ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130027 [Multi-domain]  Cd Length: 86  Bit Score: 62.34  E-value: 1.47e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1215847113 15 KEENSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLMDQLDIR 85
Cdd:TIGR00952 15 HEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIKRLGLR 85
S15_NS1_EPRS_RNA-bind cd00677
S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, ...
 23-67 9.71e-10

S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.


Pssm-ID: 238361  Cd Length: 46  Bit Score: 49.04  E-value: 9.71e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1215847113 23 EFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYL 67
Cdd:cd00677    1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYL 45
 
Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-90 1.06e-49

ribosomal protein S15


Pssm-ID: 214339  Cd Length: 90  Bit Score: 151.65  E-value: 1.06e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215847113  1 MVKNSFISVITQEEKEENSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLMD 80
Cdd:CHL00027   1 MVKNSFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLIS 80

                         90
                 ....*....|
gi 1215847113 81 QLDIREPKTR 90
Cdd:CHL00027  81 QLGIRELKTR 90
Ribosomal_S15 pfam00312
Ribosomal protein S15;
15-85 6.63e-21

Ribosomal protein S15;


Pssm-ID: 459756  Cd Length: 81  Bit Score: 78.24  E-value: 6.63e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1215847113 15 KEENSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLMDQLDIR 85
Cdd:pfam00312 11 HPGDTGSPEVQIALLTERINNLTEHLKEHKKDKHSRRGLLKLVGKRRRLLKYLKRKDVERYRYLIEKLGLR 81
RpsO COG0184
Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 10-85 7.31e-20

Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S15P/S13E is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439954  Cd Length: 89  Bit Score: 75.86  E-value: 7.31e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215847113 10 ITQEEKEE----------NSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLM 79
Cdd:COG0184    3 LTKEEKEEiikeygrhegDTGSPEVQIALLTERINNLTEHLKEHKKDHHSRRGLLKMVGKRRRLLDYLKKKDIERYRALI 82


                 ....*.
gi 1215847113 80 DQLDIR 85
Cdd:COG0184   83 AKLGLR 88
rpsO PRK05626
30S ribosomal protein S15; Reviewed
 10-85 1.24e-19

30S ribosomal protein S15; Reviewed


Pssm-ID: 180170  Cd Length: 89  Bit Score: 75.54  E-value: 1.24e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215847113 10 ITQEEKEE----------NSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLM 79
Cdd:PRK05626   3 LTKEKKAEiikeygrhegDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKDVERYRALI 82


                 ....*.
gi 1215847113 80 DQLDIR 85
Cdd:PRK05626  83 ERLGLR 88
S15_bact TIGR00952
ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically ...
 15-85 1.47e-14

ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130027 [Multi-domain]  Cd Length: 86  Bit Score: 62.34  E-value: 1.47e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1215847113 15 KEENSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLMDQLDIR 85
Cdd:TIGR00952 15 HEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIKRLGLR 85
S15_NS1_EPRS_RNA-bind cd00677
S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, ...
 23-67 9.71e-10

S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.


Pssm-ID: 238361  Cd Length: 46  Bit Score: 49.04  E-value: 9.71e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1215847113 23 EFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYL 67
Cdd:cd00677    1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYL 45
PTZ00119 PTZ00119
40S ribosomal protein S15; Provisional
 18-85 5.31e-04

40S ribosomal protein S15; Provisional


Pssm-ID: 240278  Cd Length: 302  Bit Score: 36.85  E-value: 5.31e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215847113  18 NSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQRGLRRILGKRQRLLTYLSKKKKVRYQKLMDQLDIR 85
Cdd:PTZ00119  123 DTGSAPVQIGCLTEKILNLRAHLILRCKDHPKKRTMSILLARRQKLMKYLYKTDFELYKHTCNLLKIK 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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