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Conserved domains on  [gi|1238821346|ref|YP_009420769|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Conomurex luhuanus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009590)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-162 1.07e-29

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214437  Cd Length: 163  Bit Score: 106.51  E-value: 1.07e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346   1 MSAIMLFSVTVSILLLLPLMAQPLSLGLVIMLMTLMMCCLSALLISSWYGYILFLIYVGGLLVMFAYVAALSPNVLFSGG 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346  81 YPMILFTLM-IPLLFVIFYYYPFIDLNSLSYANLYSSYSNLKTYGTELVSPDMISVLIGLGLILLINLVVVVKICYYQHA 159
Cdd:MTH00152   81 FKFVFFSLTlFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1238821346 160 SLR 162
Cdd:MTH00152  161 SLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-162 1.07e-29

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 106.51  E-value: 1.07e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346   1 MSAIMLFSVTVSILLLLPLMAQPLSLGLVIMLMTLMMCCLSALLISSWYGYILFLIYVGGLLVMFAYVAALSPNVLFSGG 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346  81 YPMILFTLM-IPLLFVIFYYYPFIDLNSLSYANLYSSYSNLKTYGTELVSPDMISVLIGLGLILLINLVVVVKICYYQHA 159
Cdd:MTH00152   81 FKFVFFSLTlFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1238821346 160 SLR 162
Cdd:MTH00152  161 SLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-162 1.07e-29

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 106.51  E-value: 1.07e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346   1 MSAIMLFSVTVSILLLLPLMAQPLSLGLVIMLMTLMMCCLSALLISSWYGYILFLIYVGGLLVMFAYVAALSPNVLFSGG 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346  81 YPMILFTLM-IPLLFVIFYYYPFIDLNSLSYANLYSSYSNLKTYGTELVSPDMISVLIGLGLILLINLVVVVKICYYQHA 159
Cdd:MTH00152   81 FKFVFFSLTlFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1238821346 160 SLR 162
Cdd:MTH00152  161 SLR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-164 1.85e-16

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 71.96  E-value: 1.85e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346   1 MSAIMLFSVTVSILLLLPLMAQPLSLGLVIMLMTLMMCCLSALLISSWYGYILFLIYVGGLLVMFAYVAALSPNVLFSGG 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346  81 YPMILFTLMIPLLFVIFYYYPFIDLNSLSYANLyssysNLKTYGTELVSPDMISVLIGLGLILLINLVVVVKICYYQHAS 160
Cdd:MTH00212   81 KYFKGFGMILISLNLYLLLMTLGSSNFSPMLNL-----KLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKGP 155


                  ....
gi 1238821346 161 LRPF 164
Cdd:MTH00212  156 LRPF 159
ND6 MTH00015
NADH dehydrogenase subunit 6; Validated
 1-165 1.17e-11

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 164590  Cd Length: 155  Bit Score: 59.49  E-value: 1.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346   1 MSAIMLFSVTVSILLLLPLMAQPLSLGLVIMLMTLMMCCLSALLISSWYGYILFLIYVGGLLVMFAYVAALSPNVLFSGG 80
Cdd:MTH00015    1 MSLSFFLILMISLTCSLFLATTPITLGINILMMALLLATTMASALSSWFAFLTFLIYVGGMLVMFAYFLALTPNQQLNLG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346  81 yPMILFTLMIPLLFvifyyypfiDLNSLSYANLYSSYSNLKTYGTELVSPDMISVLIGLGLILLINLVVVVKICYYQHAS 160
Cdd:MTH00015   81 -PMAKYTLITLLTL---------STTLKLTNPPSPSFFSSTQGNTFLYQPENAPLLIFLALILLLTMVIVVKLTRRSSGP 150


                  ....*
gi 1238821346 161 LRPFK 165
Cdd:MTH00015  151 LRPFK 155
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 4-120 3.27e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 50.19  E-value: 3.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238821346   4 IMLFSVTVSILLLLPLMAQPLSLGLVIMLMTLMMCCLSALLISS-WYGYILFLIYVGGLLVMFAYVAALSPNVLFSGGYP 82
Cdd:MTH00166    2 MMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSfWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLK 81

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1238821346  83 MILFTLMIPLLFVIFYYYPFIDLNSLSYANLYSSYSNL 120
Cdd:MTH00166   82 LLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSL 119
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 52-72 4.12e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 35.89  E-value: 4.12e-03
                          10        20
                  ....*....|....*....|.
gi 1238821346  52 ILFLIYVGGLLVMFAYVAALS 72
Cdd:MTH00138   54 VLFLIYLGGMLVVFAYSAALA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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