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Conserved domains on  [gi|1369120368|ref|YP_009467740|]
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ribosomal protein S15 (chloroplast) [Taeniatherum caput-medusae]

Protein Classification

30S ribosomal protein S15( domain architecture ID 10000021)

30S ribosomal protein S15 binds the central domain of 16S rRNA and is required for the assembly of the ribosomal small subunit.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-89 7.09e-29

ribosomal protein S15


:

Pssm-ID: 214339  Cd Length: 90  Bit Score: 98.88  E-value: 7.09e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369120368  1 MKKKggrKILGFMVKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKK 80
Cdd:CHL00027   1 MVKN---SFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKK 77


                 ....*....
gi 1369120368 81 LIGQLNIRE 89
Cdd:CHL00027  78 LISQLGIRE 86
 
Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-89 7.09e-29

ribosomal protein S15


Pssm-ID: 214339  Cd Length: 90  Bit Score: 98.88  E-value: 7.09e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369120368  1 MKKKggrKILGFMVKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKK 80
Cdd:CHL00027   1 MVKN---SFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKK 77


                 ....*....
gi 1369120368 81 LIGQLNIRE 89
Cdd:CHL00027  78 LISQLGIRE 86
Ribosomal_S15 pfam00312
Ribosomal protein S15;
18-88 2.04e-10

Ribosomal protein S15;


Pssm-ID: 459756  Cd Length: 81  Bit Score: 51.66  E-value: 2.04e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1369120368 18 KEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIR 88
Cdd:pfam00312 11 HPGDTGSPEVQIALLTERINNLTEHLKEHKKDKHSRRGLLKLVGKRRRLLKYLKRKDVERYRYLIEKLGLR 81
Ribosomal_S15p_S13e cd00353
Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and ...
 18-86 2.95e-10

Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.


Pssm-ID: 238213  Cd Length: 80  Bit Score: 51.35  E-value: 2.95e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1369120368 18 KEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLN 86
Cdd:cd00353   12 AEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG 80
RpsO COG0184
Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 17-88 1.82e-08

Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S15P/S13E is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439954  Cd Length: 89  Bit Score: 46.97  E-value: 1.82e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1369120368 17 EKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIR 88
Cdd:COG0184   17 RHEGDTGSPEVQIALLTERINNLTEHLKEHKKDHHSRRGLLKMVGKRRRLLDYLKKKDIERYRALIAKLGLR 88
S15_bact TIGR00952
ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically ...
 18-88 3.94e-07

ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130027 [Multi-domain]  Cd Length: 86  Bit Score: 43.47  E-value: 3.94e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1369120368 18 KEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIR 88
Cdd:TIGR00952 15 HEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIKRLGLR 85
 
Name Accession Description Interval E-value
rps15 CHL00027
ribosomal protein S15
 1-89 7.09e-29

ribosomal protein S15


Pssm-ID: 214339  Cd Length: 90  Bit Score: 98.88  E-value: 7.09e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369120368  1 MKKKggrKILGFMVKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKK 80
Cdd:CHL00027   1 MVKN---SFISVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKK 77


                 ....*....
gi 1369120368 81 LIGQLNIRE 89
Cdd:CHL00027  78 LISQLGIRE 86
rpsO PRK05626
30S ribosomal protein S15; Reviewed
 18-88 1.00e-10

30S ribosomal protein S15; Reviewed


Pssm-ID: 180170  Cd Length: 89  Bit Score: 52.81  E-value: 1.00e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1369120368 18 KEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIR 88
Cdd:PRK05626  18 HEGDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKDVERYRALIERLGLR 88
Ribosomal_S15 pfam00312
Ribosomal protein S15;
18-88 2.04e-10

Ribosomal protein S15;


Pssm-ID: 459756  Cd Length: 81  Bit Score: 51.66  E-value: 2.04e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1369120368 18 KEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIR 88
Cdd:pfam00312 11 HPGDTGSPEVQIALLTERINNLTEHLKEHKKDKHSRRGLLKLVGKRRRLLKYLKRKDVERYRYLIEKLGLR 81
Ribosomal_S15p_S13e cd00353
Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and ...
 18-86 2.95e-10

Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.


Pssm-ID: 238213  Cd Length: 80  Bit Score: 51.35  E-value: 2.95e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1369120368 18 KEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLN 86
Cdd:cd00353   12 AEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG 80
RpsO COG0184
Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 17-88 1.82e-08

Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S15P/S13E is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439954  Cd Length: 89  Bit Score: 46.97  E-value: 1.82e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1369120368 17 EKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIR 88
Cdd:COG0184   17 RHEGDTGSPEVQIALLTERINNLTEHLKEHKKDHHSRRGLLKMVGKRRRLLDYLKKKDIERYRALIAKLGLR 88
S15_bact TIGR00952
ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically ...
 18-88 3.94e-07

ribosomal protein S15, bacterial/organelle; This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130027 [Multi-domain]  Cd Length: 86  Bit Score: 43.47  E-value: 3.94e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1369120368 18 KEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIR 88
Cdd:TIGR00952 15 HEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIKRLGLR 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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