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Conserved domains on  [gi|1381394717|ref|YP_009480255|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Serinus canaria]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.85e-167

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 468.53  E-value: 8.85e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1381394717 321 THTLIAILTTMSVILLPISPMILTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.85e-167

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 468.53  E-value: 8.85e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1381394717 321 THTLIAILTTMSVILLPISPMILTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.02e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 3.02e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLS--------HPT 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  94 SSLI---LTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPT------LLTTLAILSAAI 164
Cdd:pfam00361  81 LLLLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 165 GGWMGLNQTQIRKILAFSSISHLGWMTIII----IYNPKLTLLNFYLYTMMTAAVFLTLNS-----MKVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1381394717 236 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 4.67e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.20  E-value: 4.67e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASTLVLF-SSMTNAWhTGQWDITQLS- 90
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  91 ----HPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLSTGLILSTIMKL----PPISLLYMTSPSLNP---T 152
Cdd:COG1007   191 alaaGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 153 LLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTL--LNFYL--YTMMTAAVFLTLNSMK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1381394717 224 VLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 3.90e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 3.90e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  93 TSSLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSL-------NPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 154 LTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLN--FYL--YTMMTAAVFLTLNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1381394717 227 ---LSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.85e-167

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 468.53  E-value: 8.85e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1381394717 321 THTLIAILTTMSVILLPISPMILTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 6.02e-139

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 398.02  E-value: 6.02e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSlNPTLLTTLAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKS 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1381394717 321 THTL-IAILTTMSVILLPISPMILTII 346
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 3.54e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 385.81  E-value: 3.54e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKS 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1381394717 321 THTLIAILTTMSVILLPISPMILTII 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 3.37e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 350.30  E-value: 3.37e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWR-TG 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....*..
gi 1381394717 319 KSTHTLIAILTTMSVILLPISPMILTI 345
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 8.55e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 295.72  E-value: 8.55e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKS 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1381394717 321 THTLIAILTTMSVILLPISPMILTII 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.59e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 248.31  E-value: 3.59e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTGKS 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330
                  ....*....|....*.
gi 1381394717 321 THTLIAILTTMSVILL 336
Cdd:MTH00041  321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.13e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 190.03  E-value: 1.13e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   1 MNPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 tgqwdITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTspsLNPTLLTTLAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 161 SAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTGKS 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|....*
gi 1381394717 321 THTLIaILTTMSVILLPISPMILTI 345
Cdd:MTH00160  312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 1.43e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.82  E-value: 1.43e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   5 AKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  85 DitqlshptSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNP-TLLTTLAILSAA 163
Cdd:MTH00144   85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 164 IGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLnSMKVLKLSTLMTAWTKVPSLNAM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1381394717 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 1.55e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 155.71  E-value: 1.55e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   7 LIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  87 TQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAILSAAIGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 167 WMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTLMTAWTKVPSLNAMLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 247 TLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTGKSthtliA 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSSLKSAPYEPKT-----K 316

                         330
                  ....*....|....
gi 1381394717 327 ILTTMSVILLPISP 340
Cdd:MTH00011  317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 9.21e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 132.10  E-value: 9.21e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   8 IFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  88 qLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLymTSPSLNPTLLTTLAILSAAIGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 168 MGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLKLSTlMTAWTKVPSLNAMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 248 LLSLAG-LPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAYCTTItlppHTTNHMKQWRTGKSTHTLIA 326
Cdd:MTH00197  232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307

                         330
                  ....*....|....*.
gi 1381394717 327 ILTTMSVILLPISPMI 342
Cdd:MTH00197  308 ILLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.02e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 3.02e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLS--------HPT 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  94 SSLI---LTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPT------LLTTLAILSAAI 164
Cdd:pfam00361  81 LLLLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 165 GGWMGLNQTQIRKILAFSSISHLGWMTIII----IYNPKLTLLNFYLYTMMTAAVFLTLNS-----MKVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1381394717 236 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 4.34e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 106.65  E-value: 4.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  13 LLLGTTITISSNHWIMAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASTLVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  79 WHTGQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNptLLTTLA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 159 ILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIII----IYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLK--LSTLMT 232
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1381394717 233 AWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRL 296
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 4.67e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.20  E-value: 4.67e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASTLVLF-SSMTNAWhTGQWDITQLS- 90
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  91 ----HPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLSTGLILSTIMKL----PPISLLYMTSPSLNP---T 152
Cdd:COG1007   191 alaaGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 153 LLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTL--LNFYL--YTMMTAAVFLTLNSMK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1381394717 224 VLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 4.91e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 102.21  E-value: 4.91e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  93 TSS------------LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKL----PPISLLYMTSPSLNPT---L 153
Cdd:PRK05777  193 LADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 154 LTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTL--LNFYL--YTMMTAAVFLTLNSMK-----V 224
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1381394717 225 LKLSTL-MTAWTKvPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRL 296
Cdd:PRK05777  353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 3.90e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 3.90e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  93 TSSLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSL-------NPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 154 LTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLN--FYL--YTMMTAAVFLTLNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1381394717 227 ---LSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 3.37e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.93  E-value: 3.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   8 IFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  87 ----TQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTtlAILSA 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 163 AIGGWMGLNQTQIRKILAFSSISHLGW----MTIIIIYNPKLTLLNFYLYTMMTAAVFLTLNSMKVLK--LSTLMTAWTK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1381394717 237 VPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-279 1.96e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 76.72  E-value: 1.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  13 LLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLSHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  93 TSSL----------ILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIM-KLPPISLLYMTSPSLNP-------TLL 154
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILRVLTLLFGAdpalflgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 155 TTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMtiiiiynpkLTLLNFYLYTMMTAAVFLTLNSM------------ 222
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYI---------LLGLGLGTPLGLAGALFHLLNHAlakallflaaga 346

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1381394717 223 -----KVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAA 279
Cdd:COG0651   347 ieratGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-192 1.05e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.90  E-value: 1.05e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   3 PQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSI---------EAATKYFLTQAAASTLVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  74 SMTNAWHTGQWDI--TQLSHPTSS------------LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPI 139
Cdd:MTH00198  267 CALYFGFTGNEGMlgTILSATLETtnielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1381394717 140 SLLymTSPSLNPTLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:MTH00198  347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 4.62e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.65  E-value: 4.62e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   7 LIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHP-RSIEAATKYFLTQAAASTLVL--FSSM--TNAWHT 81
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  82 GQWDI------TQLSHPTSSLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISL----LYMTSP 147
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381394717 148 SLNP---TLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIII-------YNPKLTLLNFYLY 208
Cdd:CHL00049  274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 3.95e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 67.00  E-value: 3.95e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  50 PRSIEAATKYFLTQAAASTLVLF-SSMTNAWHTGQwdiTQLSHPTSSLI-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 116 PEVLQGSPLSTGLILSTIMKLP----PISLLYMTSPSLNP---TLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                  ....
gi 1381394717 189 WMTI 192
Cdd:PRK02504  314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 1.59e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.10  E-value: 1.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  49 HPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQW--DI-----TQLSHPTSSLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaelaaAPLPLTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 119 LQGSPLSTGLILSTIMK--------------LPPISLLYMTspslnptLLTTLAILSAAIGGWMGLNQTQIRKILAFSSI 184
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYFAP-------LLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308


                  ....*...
gi 1381394717 185 SHLGWMTI 192
Cdd:COG1008   309 SHMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.11e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.26  E-value: 1.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  33 LEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASTLVLFS-----------SMTNAWHTGQWDITQLSHPTSSLiLTS 100
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygtlNMAYLAVKMSENPTVVAKIALAL-FIA 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 101 AIAMKLGLVPFHFWFPEVLQGSP--LSTGLILSTIMKLPPISLLYMT--SPSLNPT----LLTTLAILSAAIGGWMGLNQ 172
Cdd:PRK08376  229 GLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQ 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 173 TQIRKILAFSSISHLGWMTI---IIIYNPKLTLLNFYLYTMMTAAVFLTLNS--MKVL---------------KLSTLMT 232
Cdd:PRK08376  309 KDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNHalYKALlfltagaviyetgtrNLNELGG 388

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1381394717 233 AWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  389 LARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 2.65e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.95  E-value: 2.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  50 PRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQW----DITQLSHPTSS-----LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 121 GSPLSTGLILSTIM-KLPPISLLYMTSPsLNP-------TLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 1381394717 193 II 194
Cdd:TIGR01972 311 GI 312
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-192 3.24e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 55.16  E-value: 3.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  23 SNHWIMAWAGLEINTLAILPLISKSHH-PRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQL-----SHPTSSL 96
Cdd:COG1009   130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  97 ILTSAIAM------KLGLVPFHFWFPEVLQG-SPLSTgLILSTIMKLPPISLLYMTSP--SLNPTLLTTLAILSAA---I 164
Cdd:COG1009   210 LTLILLLLllgafgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIIGAItalF 288

                         170       180
                  ....*....|....*....|....*...
gi 1381394717 165 GGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:COG1009   289 AALIALAQTDIKRVLAYSTVSQLGYMFL 316
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 8.61e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.02  E-value: 8.61e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1381394717 291 FFYLRLAYCTTITLPPHTTNHMKQWRTGKSTHT-LIAILTTMSVILLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 3.67e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 51.68  E-value: 3.67e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  13 LLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAA------STLVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  87 TQL----SHPTSSLILTSAIAM------KLGLVPFHFWFPEVLQGSPLSTGLILS-TIMKLPPISLLYMTS-------PS 148
Cdd:PRK08676  191 TELaahaSLLSPSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1381394717 149 LNPTLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 3.96e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.42  E-value: 3.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFS-SMTNAwHTGQWDITQLSHP--------TSSLILTSAIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGAlaenptvvTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 104 MKLGLVPFHFWFPEVLQG-SPLSTGLILSTIMKLPPISLL----------YMTSPSLNpTLLTTLAILSAAIGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvfggdFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 173 TQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLYT-----------MMTAAVFLTLNSMKVLKLSTLMTawtKVPSLN 241
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLTA 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1381394717 242 AMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFYLRLAY 298
Cdd:PRK08375  370 AAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 5.40e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.97  E-value: 5.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  50 PRSIEAATKYFLTQAAASTLVLFSSMTNAWH----TGQWDITQLSHPTSS--------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 118 VLQGSPLSTGLILSTIM-KLPPISLLYMTSPsLNP-------TLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGW 189
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                  ....*
gi 1381394717 190 MTIII 194
Cdd:PRK05846  316 VTLGI 320
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 5.92e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 51.08  E-value: 5.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   8 IFTISLLLgttiTISSNHWIMAWAGLEINTLAILPLISKSHHPRSIEAATKYFL------TQAAASTLVLFSS----MTN 77
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANaatvMGD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  78 AWHTGQW-DITQLSHPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLSTGLILSTImkLPPISLL-----YM 144
Cdd:PRK06458  192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGV--LLNVALYavlryYI 269

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1381394717 145 -----TSPSLNPTLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:PRK06458  270 lidaaIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 1.63e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.61  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717   2 NPQAKLIFTISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHpRSIEAATKYFLTQAAASTLVLFSSMTNAWHT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  82 GQWDIT-------QLSHPTSSLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILS-------------TIMKLP 137
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygfllVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 138 PISLL-----YMTSPSLNpTLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYNPKLT----LLNFYLY 208
Cdd:PRK08668  255 GTKLFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNH 333

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381394717 209 TMMTAAVFLTLNSM----KVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 275
Cdd:PRK08668  334 ALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 2.01e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.54  E-value: 2.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  96 LILTSAIAmKLGLVPFHFWFPEVLQG-SPLS----------TGLILstIMKLPPIsllYMTSPSLNPTLLTtLAILSAAI 164
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAApTPVSaylhaaamvkAGIYL--VARLAPG---FADVPVWRPTVLV-LGLATMLL 280

                          90       100       110
                  ....*....|....*....|....*....|
gi 1381394717 165 GGWMGLNQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12644  281 GGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 2.08e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 46.23  E-value: 2.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  55 AATKYFLTQAAASTLVLFSSMTNAWHTGQWDI---TQLSH--PTSSLILTSA-----IAMKLGLVPFHFWFPE--VLQGS 122
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlPLSTQLLLLApilvgFGIKIPLVPFHTWLPDahVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1381394717 123 PLSTgLILSTIMKLPPISLL------YMTSPSLNPTLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK06473  238 PVSV-LLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12650 PRK12650
DUF4040 family protein;
98-194 4.39e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.42  E-value: 4.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  98 LTSAIAM--------KLGLVPFHFWFPEVLQG-SPLSTGLILSTIMKlPPISLLYMTSPSL--NPT---LLTTLAILSAA 163
Cdd:PRK12650  206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVK-AGIYLLLRFSPVFhdVAVwnwLLIIVGMITAL 284

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1381394717 164 IGGWMGLNQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12650  285 MGAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 1.26e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  55 AATKYFLTQAAASTLVLFSSMTNAWHTGQ--WDITQLS--HPTSSLILTS------AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyagfliAFGVKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 118 ----VLQGSPLSTG---LILSTIMKLPPISLLYmtSPslnptLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK12561  218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYF--AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290


                  ....
gi 1381394717 191 TIII 194
Cdd:PRK12561  291 LLGI 294
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 1.30e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.40  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLSH--PTSSLILTSAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 111 FHFWFPEVLQGSPLSTGLILSTIM---KLPPISLLYMTSPSLNPtLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281


                  ..
gi 1381394717 188 GW 189
Cdd:PRK07234  282 GF 283
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 81-188 1.58e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.57  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  81 TGQWDITQLSHPTSSLILT-----SAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIM-KLPPISLLYMTSPSLNP--- 151
Cdd:PRK08667  189 TGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMlKVAVYGLVRFLMDVLSPelw 268

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1381394717 152 --TLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK08667  269 wgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-192 1.60e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 43.13  E-value: 1.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  53 IEAATKYFLTQAAASTLVLFSSMTNAWHTGQWD-----ITQLSHPTSSLILTS---AIAMKLGLVPFHFWFPEVLQGSPL 124
Cdd:MTH00204  162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDyqillNIKLPLSIQKWLLVGfflSLAVKIPQIPFHIWLPQAHVEAPV 241

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1381394717 125 STGLILSTI-MKLPPISLLYMTSPSL-------NPtLLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:MTH00204  242 AGSVILAGIlLKLGGYGFLRFSWPLFpaaseyfAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPL 316
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
54-190 1.81e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 43.47  E-value: 1.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  54 EAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLSHPTSSLILTSAIAMKLGLV----------------PFHFWFPE 117
Cdd:PRK07376  173 DAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWLPD 252

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1381394717 118 VLQG-SPLStGLILSTIMKLPPISLLYMTSP--SLNPTLLTTLAI---LSAAIGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376  253 AMEGpTPIS-ALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 1.87e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.28  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  48 HHPRSIEAATKYFLTQAAASTLVLFSSMTNAWHTGQWDITQLSHPTSS---------------LILTSAiAMKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 113 FWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPT-----LLTTLAILSAAIGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                  ....*....
gi 1381394717 188 GWMTIIIIY 196
Cdd:PRK12649  315 AYLMTMYGY 323
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 2.05e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.01  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  92 PTSSLILTSAIAMKLGLVPFhFWFPEVLQGSPLSTGLILSTIMKLPPI-------SLLYMTSPSLNPTLLTTLAILSAAI 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 165 GGWMGLNQTQIRKILAFSSISHLGWMTI-IIIYNPK-LTLLNFYLYTMMT--AAVFLTLNSMKVL----KLSTLMTAWTK 236
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1381394717 237 VPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-268 2.56e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.02  E-value: 2.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 111 FHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSPSLNPTLLTTLAI-----LSAAIGGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVIAYSTCS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 186 HLGWMTIIIIY--NPKLTLLNFYLYTMMTAAVFL---------TLNSMKVLKLSTLMTAwtkVPSLNAMLLLTLLSLAGL 254
Cdd:MTH00032  324 QLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGSFSIMGL 400

                         170
                  ....*....|....
gi 1381394717 255 PPLTGFLPKWLIIQ 268
Cdd:MTH00032  401 PYLTGFYSKDLILE 414
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 3.15e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.60  E-value: 3.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 109 VPFHFWFPEVLQG-SPLSTGLILSTIMKLPpISLLYMTSPSLNPTLL--TTLAILSAA---IGGWMGLNQTQIRKILAFS 182
Cdd:PRK12647  212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 183 SISHLGWMTIIIIYNPKLTLLNFYLY----TMMTAAVFLTLNSMK-------VLKLSTLmtaWTKVPSLNAMLLLTLLSL 251
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSM 367

                         170
                  ....*....|....*
gi 1381394717 252 AGLPPLTGFLPKWLI 266
Cdd:PRK12647  368 AGLPPLFGFLAKELI 382
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 8.31e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 8.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQAAASTLVLFS-----SMTNAWHTGQWDITQLSHPTSSLI------LTSA 101
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMGDMFLIIQDLPTNRAIqigvlfIMVG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 102 IAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPISL------------LYMTSPSLNpTLLTTLAILSAAIGGWMG 169
Cdd:PRK12662  219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSVLA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 170 LNQTQIRKILAFSSISHLGWMTIIIIYNPKLTLLNFYLY----TMMTAAVFLTLNSMK----VLKLSTLMTAWTKVPSLN 241
Cdd:PRK12662  298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKIT 377

                         250       260
                  ....*....|....*....|....*.
gi 1381394717 242 AMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  378 LAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 1.24e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.68  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 101 AIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTI-MKLPPISLLYMTSP-------SLNPTLLtTLAILSAAIGGWMGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|...
gi 1381394717 173 TQIRKILAFSSISHLGWMTIIII 195
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 148-191 7.37e-03

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 38.22  E-value: 7.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1381394717 148 SLNPTLLTTLAILSAA---IGGWMGLNQTQIRKILAFSSISHLGWMT 191
Cdd:PRK06590  275 ELSPEALLFVAIVGAVtalFAAFIGLVQTDIKRVLAYSTMSQLGYMF 321
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 101-194 7.56e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.11  E-value: 7.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 101 AIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTI-MKLPPISLLYMTSPSLN------PTLLTTLAILSAAIGGWMGLNQT 173
Cdd:MTH00217  215 SLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVlLKLGGYGFIRFSWPLLPeaseyfSPLIQTLSLLAIIYGSLTTCRQV 294

                          90       100
                  ....*....|....*....|.
gi 1381394717 174 QIRKILAFSSISHLGWMTIII 194
Cdd:MTH00217  295 DLKRIIAYSSVAHMGLVTLGI 315
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-305 9.11e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 37.75  E-value: 9.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 111 FHFWFPEVLQGSPLSTGLILSTIMKLPPISLLYMTSP--SLNPTLL---TTLAILSAAIGGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALiivTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381394717 186 HLGWMTIII-IYNPKLTLLNFYLYTMMTAAVFLTLNSM--------KVLKLSTLMTAwtkVPSLNAMLLLTLLSLAGLPP 256
Cdd:MTH00020  309 QLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLTYIFFLIGSLSLMGFPY 385

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1381394717 257 LTGFLPKWLIIQELTKQEMIPAATLISLLSLLSLFFY-LRLAYCTTITLP 305
Cdd:MTH00020  386 LTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYsIRLIYLTFLSNT 435
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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